Carg17851-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17851-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Tubulin beta chain
Location	Cucurbita_argyrosperma_scaffold_070 : 530017 .. 530921 (+)
Sequence length	772

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGTCTACCGCCGGAACCGACCCCATTTTGTTCTCTTTCGCCGGAGCTTGCTCGGTAAGTTTCAATTTCTCAGATCTGATTGCTGCATTTGATTCCTTCCGTGTTCTAGATTTGGAAAACTAAGAGTGATCTGGTATTGTCTTATTCTCACATAGAAATGTCATGAATCTGTAATTTGATCGGGTTTCTTTCGAACTCTATGGAATATTCTGGCACCGAAATTTGATGAATCTGTGATTTGTGCTGGGTGATTTGGTTGAAGTTCACTGCATTGTGTGGAATTTCACTTCCTTGTTTGGAATGCTTCCGATCCAATGTCTACGATGATATTGAAATGTATGCATTCGATGCAGAGGATTTTGAGTTTCGATGTCTTATTGATCTCATTTTGCTGATCTTCTATTCTGTGTTCTTTGATTTTGGTGCCAATCGAATTATGTGTTTAACTTCAGAGTGTTCTTGTGGACAGTAAGAAGATGAGGGAGATTCTCCACGTTCAAGGAGGTCAGTGTGGTAACCAGATCGGATCCAAGTTTTGGGAAGTGTTGTGTGATGAACATGGCATAGATCCTACTGGCCGATACACTGGAACCTCCGATTTGCAGCTTGAACGTGTAAATGTGTATTACAATGAGGCTTCTTGTGGGCGTTATGTCCCTCGTGCTGTGCTCATGGATCTGGAGCCTGGTACCATGGACAGTGTGAGGACAGGTCCTTATGGACAAATCTTCAGGCCGGACAATTTCGTTTTTGGGCAATCTGGGGCTGGTAATAACTGGGCCAAGGGGCATTACACAGAAGGAGCAGAACTCATTGATGCTGTGCTCGACGTCGTGAGAAAGGAAGCCGAGAATTGTGATTGCCTTCAAGGTATAAATCTATGTCTCAGATCATCTTGTGCTTGA

mRNA sequence

CCGTCTACCGCCGGAACCGACCCCATTTTGTTCTCTTTCGCCGGAGCTTGCTCGGTAAGTTTCAATTTCTCAGATCTGATTGCTGCATTTGATTCCTTCCGTGTTCTAGATTTGGAAAACTAAGAGTGATCTGGTATTGTCTTATTCTCACATAGAAATGTCATGAATCTGTAATTTGATCGGGTTTCTTTCGAACTCTATGGAATATTCTGGCACCGAAATTTGATGAATCTGTGATTTGTGCTGGGTGATTTGGTTGAAGTTCACTGCATTGTGTGGAATTTCACTTCCTTGTTTGGAATGCTTCCGATCCAATGTCTACGATGATATTGAAATTAAGAAGATGAGGGAGATTCTCCACGTTCAAGGAGGTCAGTGTGGTAACCAGATCGGATCCAAGTTTTGGGAAGTGTTGTGTGATGAACATGGCATAGATCCTACTGGCCGATACACTGGAACCTCCGATTTGCAGCTTGAACGTGTAAATGTGTATTACAATGAGGCTTCTTGTGGGCGTTATGTCCCTCGTGCTGTGCTCATGGATCTGGAGCCTGGTACCATGGACAGTGTGAGGACAGGTCCTTATGGACAAATCTTCAGGCCGGACAATTTCGTTTTTGGGCAATCTGGGGCTGGTAATAACTGGGCCAAGGGGCATTACACAGAAGGAGCAGAACTCATTGATGCTGTGCTCGACGTCGTGAGAAAGGAAGCCGAGAATTGTGATTGCCTTCAAGGTATAAATCTATGTCTCAGATCATCTTGTGCTTGA

Coding sequence (CDS)

ATGAGGGAGATTCTCCACGTTCAAGGAGGTCAGTGTGGTAACCAGATCGGATCCAAGTTTTGGGAAGTGTTGTGTGATGAACATGGCATAGATCCTACTGGCCGATACACTGGAACCTCCGATTTGCAGCTTGAACGTGTAAATGTGTATTACAATGAGGCTTCTTGTGGGCGTTATGTCCCTCGTGCTGTGCTCATGGATCTGGAGCCTGGTACCATGGACAGTGTGAGGACAGGTCCTTATGGACAAATCTTCAGGCCGGACAATTTCGTTTTTGGGCAATCTGGGGCTGGTAATAACTGGGCCAAGGGGCATTACACAGAAGGAGCAGAACTCATTGATGCTGTGCTCGACGTCGTGAGAAAGGAAGCCGAGAATTGTGATTGCCTTCAAGGTATAAATCTATGTCTCAGATCATCTTGTGCTTGA

Protein sequence

MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGINLCLRSSCA

Homology

[Close]

BLAST of Carg17851-RA vs. NCBI nr
Match: XP_004139067.1 (PREDICTED: tubulin beta-6 chain [Cucumis sativus] >KGN66563.1 hypothetical protein Csa_1G629200 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 8.6e-76
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. NCBI nr
Match: XP_008450322.1 (PREDICTED: tubulin beta-6 chain [Cucumis melo])

HSP 1 Score: 292.4 bits (747), Expect = 8.6e-76
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. NCBI nr
Match: XP_022153267.1 (tubulin beta-6 chain-like [Momordica charantia])

HSP 1 Score: 292.4 bits (747), Expect = 8.6e-76
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. NCBI nr
Match: XP_022961097.1 (tubulin beta-6 chain [Cucurbita moschata] >XP_022961098.1 tubulin beta-6 chain [Cucurbita moschata] >XP_022988111.1 tubulin beta-6 chain [Cucurbita maxima] >XP_022988112.1 tubulin beta-6 chain [Cucurbita maxima] >XP_023516484.1 tubulin beta-6 chain [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.4 bits (747), Expect = 8.6e-76
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. NCBI nr
Match: XP_022925330.1 (tubulin beta-6 chain-like [Cucurbita moschata] >XP_022925337.1 tubulin beta-6 chain-like [Cucurbita moschata])

HSP 1 Score: 291.2 bits (744), Expect = 1.9e-75
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. TAIR10
Match: AT5G12250.1 (beta-6 tubulin)

HSP 1 Score: 286.6 bits (732), Expect = 8.5e-78
Identity = 128/136 (94.12%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY G SDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. TAIR10
Match: AT5G62690.1 (tubulin beta chain 2)

HSP 1 Score: 276.6 bits (706), Expect = 8.8e-75
Identity = 122/136 (89.71%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGIDPTGRYTG SDLQLER+NVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDS+R+GPYGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. TAIR10
Match: AT5G62700.1 (tubulin beta chain 3)

HSP 1 Score: 276.6 bits (706), Expect = 8.8e-75
Identity = 122/136 (89.71%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGIDPTGRYTG SDLQLER+NVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDS+R+GPYGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. TAIR10
Match: AT1G75780.1 (tubulin beta-1 chain)

HSP 1 Score: 275.4 bits (703), Expect = 2.0e-74
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTS-DLQLERVNVYYNEASCGRY 60
           MREILHVQGGQCGNQIGSKFWEV+CDEHG+DPTGRY G S DLQLER+NVYYNEAS GRY
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60

Query: 61  VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
           VPRAVLMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV
Sbjct: 61  VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120

Query: 121 VRKEAENCDCLQGINLC 137
           VRKEAENCDCLQG  +C
Sbjct: 121 VRKEAENCDCLQGFQVC 137

[Close]

BLAST of Carg17851-RA vs. TAIR10
Match: AT5G23860.1 (tubulin beta 8)

HSP 1 Score: 273.5 bits (698), Expect = 7.5e-74
Identity = 122/136 (89.71%), Postives = 130/136 (95.59%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGID TGRY G +DLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVR+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. Swiss-Prot
Match: sp|Q9ZPN9|TBB2_ELEIN (Tubulin beta-2 chain OS=Eleusine indica OX=29674 GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-76
Identity = 128/136 (94.12%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. Swiss-Prot
Match: sp|Q9ZRB1|TBB2_WHEAT (Tubulin beta-2 chain OS=Triticum aestivum OX=4565 GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-76
Identity = 128/136 (94.12%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. Swiss-Prot
Match: sp|P93176|TBB_HORVU (Tubulin beta chain OS=Hordeum vulgare OX=4513 GN=TUBB PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-76
Identity = 128/136 (94.12%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. Swiss-Prot
Match: sp|P29514|TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 1.5e-76
Identity = 128/136 (94.12%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY G SDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. Swiss-Prot
Match: sp|Q43594|TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 286.2 bits (731), Expect = 2.0e-76
Identity = 128/136 (94.12%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY GTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. TrEMBL
Match: tr|A0A1S3BNZ0|A0A1S3BNZ0_CUCME (Tubulin beta chain OS=Cucumis melo OX=3656 GN=LOC103491964 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.7e-76
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. TrEMBL
Match: tr|A0A0A0LXT7|A0A0A0LXT7_CUCSA (Tubulin beta chain OS=Cucumis sativus OX=3659 GN=Csa_1G629200 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.7e-76
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. TrEMBL
Match: tr|A7KQH4|A7KQH4_EUCGR (Tubulin beta chain OS=Eucalyptus grandis OX=71139 GN=TUB5 PE=2 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.8e-75
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQIC 136

[Close]

BLAST of Carg17851-RA vs. TrEMBL
Match: tr|A0A1U8AVA7|A0A1U8AVA7_NELNU (Tubulin beta chain OS=Nelumbo nucifera OX=4432 GN=LOC104607854 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 8.2e-75
Identity = 130/136 (95.59%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]

BLAST of Carg17851-RA vs. TrEMBL
Match: tr|A0A1J3FZX9|A0A1J3FZX9_NOCCA (Tubulin beta chain OS=Noccaea caerulescens OX=107243 GN=GA_TR15910_c7_g1_i1_g.50286 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 8.2e-75
Identity = 129/136 (94.85%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRYTG SDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

The following BLAST results are available for this feature:

BLAST of Carg17851-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139067.1	8.6e-76	97.79	PREDICTED: tubulin beta-6 chain [Cucumis sativus] >KGN66563.1 hypothetical prote...	[more]
XP_008450322.1	8.6e-76	97.79	PREDICTED: tubulin beta-6 chain [Cucumis melo]	[more]
XP_022153267.1	8.6e-76	97.79	tubulin beta-6 chain-like [Momordica charantia]	[more]
XP_022961097.1	8.6e-76	97.79	tubulin beta-6 chain [Cucurbita moschata] >XP_022961098.1 tubulin beta-6 chain [...	[more]
XP_022925330.1	1.9e-75	97.06	tubulin beta-6 chain-like [Cucurbita moschata] >XP_022925337.1 tubulin beta-6 ch...	[more]

BLAST of Carg17851-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12250.1	8.5e-78	94.12	beta-6 tubulin	[more]
AT5G62690.1	8.8e-75	89.71	tubulin beta chain 2	[more]
AT5G62700.1	8.8e-75	89.71	tubulin beta chain 3	[more]
AT1G75780.1	2.0e-74	91.24	tubulin beta-1 chain	[more]
AT5G23860.1	7.5e-74	89.71	tubulin beta 8	[more]

BLAST of Carg17851-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZPN9\|TBB2_ELEIN	1.2e-76	94.12	Tubulin beta-2 chain OS=Eleusine indica OX=29674 GN=TUBB2 PE=2 SV=1	[more]
sp\|Q9ZRB1\|TBB2_WHEAT	1.2e-76	94.12	Tubulin beta-2 chain OS=Triticum aestivum OX=4565 GN=TUBB2 PE=2 SV=1	[more]
sp\|P93176\|TBB_HORVU	1.2e-76	94.12	Tubulin beta chain OS=Hordeum vulgare OX=4513 GN=TUBB PE=2 SV=1	[more]
sp\|P29514\|TBB6_ARATH	1.5e-76	94.12	Tubulin beta-6 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB6 PE=2 SV=1	[more]
sp\|Q43594\|TBB1_ORYSJ	2.0e-76	94.12	Tubulin beta-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB1 PE=2 SV=2	[more]

BLAST of Carg17851-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BNZ0\|A0A1S3BNZ0_CUCME	5.7e-76	97.79	Tubulin beta chain OS=Cucumis melo OX=3656 GN=LOC103491964 PE=3 SV=1	[more]
tr\|A0A0A0LXT7\|A0A0A0LXT7_CUCSA	5.7e-76	97.79	Tubulin beta chain OS=Cucumis sativus OX=3659 GN=Csa_1G629200 PE=3 SV=1	[more]
tr\|A7KQH4\|A7KQH4_EUCGR	2.8e-75	96.32	Tubulin beta chain OS=Eucalyptus grandis OX=71139 GN=TUB5 PE=2 SV=1	[more]
tr\|A0A1U8AVA7\|A0A1U8AVA7_NELNU	8.2e-75	95.59	Tubulin beta chain OS=Nelumbo nucifera OX=4432 GN=LOC104607854 PE=3 SV=1	[more]
tr\|A0A1J3FZX9\|A0A1J3FZX9_NOCCA	8.2e-75	94.85	Tubulin beta chain OS=Noccaea caerulescens OX=107243 GN=GA_TR15910_c7_g1_i1_g.50...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003924	GTPase activity
GO:0005200	structural constituent of cytoskeleton
GO:0005525	GTP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005874	microtubule

Vocabulary: **INTERPRO**
Term	Definition
IPR013838	Beta-tubulin_BS
IPR003008	Tubulin_FtsZ_GTPase
IPR036525	Tubulin/FtsZ_GTPase_sf
IPR000217	Tubulin
IPR002453	Beta_tubulin

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005874	microtubule
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005200	structural constituent of cytoskeleton

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg17851	Carg17851	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17851-RA.exon.1	Carg17851-RA.exon.1	exon
Carg17851-RA.exon.2	Carg17851-RA.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17851-RA.five_prime_UTR.1	Carg17851-RA.five_prime_UTR.1	five_prime_UTR
Carg17851-RA.five_prime_UTR.2	Carg17851-RA.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17851-RA.CDS.1	Carg17851-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg17851-RA	Carg17851-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002453	Beta tubulin	PRINTS	PR01163	BETATUBULIN	coord: 88..99 score: 94.76 coord: 41..58 score: 75.84 coord: 108..126 score: 84.57
IPR000217	Tubulin	PRINTS	PR01161	TUBULIN	coord: 93..104 score: 76.26 coord: 51..70 score: 66.6 coord: 10..30 score: 71.89 coord: 106..130 score: 68.98
IPR000217	Tubulin	PANTHER	PTHR11588	TUBULIN	coord: 1..137
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	GENE3D	G3DSA:3.40.50.1440		coord: 1..140 e-value: 3.5E-65 score: 222.1
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	SUPERFAMILY	SSF52490	Tubulin nucleotide-binding domain-like	coord: 1..137
IPR003008	Tubulin/FtsZ, GTPase domain	PFAM	PF00091	Tubulin	coord: 3..136 e-value: 4.9E-38 score: 131.2
None	No IPR available	PANTHER	PTHR11588:SF106	TUBULIN BETA-6 CHAIN	coord: 1..137
IPR013838	Beta tubulin, autoregulation binding site	PROSITE	PS00228	TUBULIN_B_AUTOREG	coord: 1..4