Cp4.1LG18g01210 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g01210
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Late embryogenesis abundant hydroxyproline-rich glycoprotein
Location	Cp4.1LG18 : 2832904 .. 2833698 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACCGCGTCCATCCCGCCGAATCCCCCCGCCCGAGCACCTCCTCCGCCGTATCTGACTCCAAGCCTCCATCTCCCTCCGCCGACAAGCCTACTCCGGCTCCCGGCACCTACGTCATCCAACTCCCCAAAGACCAGATATACCGCGTTCCGCCGCCCGAAAATGCTCACCGCTTCGAGCTCTACACTCGCCGAAAGAACCGCCGCAGCCGCTGCTGTTTCTGCCTCTGTTGGCTACTCGGTATTCTTGCTGTCCTAATCGTTCTTCTAGGCATTGCCGTCGCGATTTTTTACTTAGTCGTTCGCCCTAAATCGCCTAATTACTCGATCGACGCCATTGCGATTAGAGGACTTAACTCCACCGCTTCATCCTCATCCGCGATCTCTCCAGTTTTCGATGTGGCCGTTCGAGCAGATAATCCAAACAAGAAAATCGGAATCTATTACCAGACAGATAGTTCAGTTCAAATCTATTTCTCCGATGAGAAGCTTTCCGATGGCGTTTTGCCTGCTTTCTTCCAACCAGCGAACAACGTCACTGTATTCCAATCATCCGTGAGAGGCTCCGGCGTTAATCTATCCAAACAAGCAAGCAAAGCGCTAATCGATTCGCAGAAACGGCGTGCGGTGCCGTTCAAGGTGGAGATTCGAGCGCCGATTAAACTGAAAATAGGATCGGTGAAGACTTGGAAGATCAGAGTAAAGGTAACCTGCGATGTGACGGTGAATCAGTTGGCGGCGGCGGCGAAGATCGTTTCAAAGAATTGCGATTACAATGTGAAGCTCTGGTAG

mRNA sequence

ATGGCCGACCGCGTCCATCCCGCCGAATCCCCCCGCCCGAGCACCTCCTCCGCCGTATCTGACTCCAAGCCTCCATCTCCCTCCGCCGACAAGCCTACTCCGGCTCCCGGCACCTACGTCATCCAACTCCCCAAAGACCAGATATACCGCGTTCCGCCGCCCGAAAATGCTCACCGCTTCGAGCTCTACACTCGCCGAAAGAACCGCCGCAGCCGCTGCTGTTTCTGCCTCTGTTGGCTACTCGGTATTCTTGCTGTCCTAATCGTTCTTCTAGGCATTGCCGTCGCGATTTTTTACTTAGTCGTTCGCCCTAAATCGCCTAATTACTCGATCGACGCCATTGCGATTAGAGGACTTAACTCCACCGCTTCATCCTCATCCGCGATCTCTCCAGTTTTCGATGTGGCCGTTCGAGCAGATAATCCAAACAAGAAAATCGGAATCTATTACCAGACAGATAGTTCAGTTCAAATCTATTTCTCCGATGAGAAGCTTTCCGATGGCGTTTTGCCTGCTTTCTTCCAACCAGCGAACAACGTCACTGTATTCCAATCATCCGTGAGAGGCTCCGGCGTTAATCTATCCAAACAAGCAAGCAAAGCGCTAATCGATTCGCAGAAACGGCGTGCGGTGCCGTTCAAGGTGGAGATTCGAGCGCCGATTAAACTGAAAATAGGATCGGTGAAGACTTGGAAGATCAGAGTAAAGGTAACCTGCGATGTGACGGTGAATCAGTTGGCGGCGGCGGCGAAGATCGTTTCAAAGAATTGCGATTACAATGTGAAGCTCTGGTAG

Coding sequence (CDS)

ATGGCCGACCGCGTCCATCCCGCCGAATCCCCCCGCCCGAGCACCTCCTCCGCCGTATCTGACTCCAAGCCTCCATCTCCCTCCGCCGACAAGCCTACTCCGGCTCCCGGCACCTACGTCATCCAACTCCCCAAAGACCAGATATACCGCGTTCCGCCGCCCGAAAATGCTCACCGCTTCGAGCTCTACACTCGCCGAAAGAACCGCCGCAGCCGCTGCTGTTTCTGCCTCTGTTGGCTACTCGGTATTCTTGCTGTCCTAATCGTTCTTCTAGGCATTGCCGTCGCGATTTTTTACTTAGTCGTTCGCCCTAAATCGCCTAATTACTCGATCGACGCCATTGCGATTAGAGGACTTAACTCCACCGCTTCATCCTCATCCGCGATCTCTCCAGTTTTCGATGTGGCCGTTCGAGCAGATAATCCAAACAAGAAAATCGGAATCTATTACCAGACAGATAGTTCAGTTCAAATCTATTTCTCCGATGAGAAGCTTTCCGATGGCGTTTTGCCTGCTTTCTTCCAACCAGCGAACAACGTCACTGTATTCCAATCATCCGTGAGAGGCTCCGGCGTTAATCTATCCAAACAAGCAAGCAAAGCGCTAATCGATTCGCAGAAACGGCGTGCGGTGCCGTTCAAGGTGGAGATTCGAGCGCCGATTAAACTGAAAATAGGATCGGTGAAGACTTGGAAGATCAGAGTAAAGGTAACCTGCGATGTGACGGTGAATCAGTTGGCGGCGGCGGCGAAGATCGTTTCAAAGAATTGCGATTACAATGTGAAGCTCTGGTAG

Protein sequence

MADRVHPAESPRPSTSSAVSDSKPPSPSADKPTPAPGTYVIQLPKDQIYRVPPPENAHRFELYTRRKNRRSRCCFCLCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYSIDAIAIRGLNSTASSSSAISPVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLSDGVLPAFFQPANNVTVFQSSVRGSGVNLSKQASKALIDSQKRRAVPFKVEIRAPIKLKIGSVKTWKIRVKVTCDVTVNQLAAAAKIVSKNCDYNVKLW

Homology

[Close]

BLAST of Cp4.1LG18g01210 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-12
Identity = 56/217 (25.81%), Postives = 102/217 (47.00%), Query Frame = 1


Query: 51  VPPPENAHRFELYTRRKNRRSRCCFCLCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYS 110
           VPPP        Y RR + R   C  L   + ++  LIV+LG+A  IF+L+VRP++  + 
Sbjct: 16  VPPPAPKG----YYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFH 75

Query: 111 IDAIAIRGLNSTASSSSAISPVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLSDGVL 170
           +   ++   + T S  + +     + V   NPNK+IG+YY        Y+  ++ S   L
Sbjct: 76  VTDASLTRFDHT-SPDNILRYNLALTVPVRNPNKRIGLYYDR-IEAHAYYEGKRFSTITL 135

Query: 171 PAFFQPANNVTVFQSSVRGSGVNLSKQASKALIDSQKRRAV-PFKVEIRAPIKLKIGSVK 230
             F+Q   N TV   + +G  + +        +++++   V   +++ R  ++ K+G +K
Sbjct: 136 TPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVRFKLGDLK 195

Query: 231 TWKIRVKVTCD------VTVNQLAAAAKIVSKNCDYN 261
             +I+ KV CD       T N     + +    CD++
Sbjct: 196 FRRIKPKVDCDDLRLPLSTSNGTTTTSTVFPIKCDFD 226

[Close]

BLAST of Cp4.1LG18g01210 vs. Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08
Identity = 47/175 (26.86%), Postives = 84/175 (48.00%), Query Frame = 1


Query: 73  CCFC--LCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYSIDAIAIRGLNSTASSSSAIS 132
           CC C  L  +  IL  + VLLGIA  I +L+ RP +  + +    +       +++   +
Sbjct: 39  CCGCCILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYN 98

Query: 133 PVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLS-DGVLPAFFQPANNVTVFQSSVRG 192
              +  +R  NPN++IG+YY  +  V+ Y+ D++      +  F+Q   N TV  + + G
Sbjct: 99  LDLNFTIR--NPNRRIGVYYD-EIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVG 158

Query: 193 SG-VNLSKQASKALIDSQKRRAVPFKVEIRAPIKLKIGSVKTWKIRVKVTCDVTV 244
              V L     K L +    +      ++R  I+ K G +K+W+ + K+ CD+ V
Sbjct: 159 QQLVLLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKV 210

[Close]

BLAST of Cp4.1LG18g01210 vs. TrEMBL
Match: A0A0A0LX01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G601000 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 4.1e-90
Identity = 184/266 (69.17%), Postives = 221/266 (83.08%), Query Frame = 1


Query: 1   MADRVHP-AESPRPSTSSAVSDSKPPSPSADKPTPAPGTYVIQLPKDQIYRVPPPENAHR 60
           MADRVHP A+SPRPSTSS +SD+  PS      +P PGTYVIQLPKDQIYR+PPPENAHR
Sbjct: 1   MADRVHPTADSPRPSTSSTLSDTTKPS------SPPPGTYVIQLPKDQIYRLPPPENAHR 60

Query: 61  FELYTRRKNRR-SRCCFCLCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYSIDAIAIRG 120
           F+LYTR+ +RR +RC  CL  LL ILA+LI+LLGI +A+FY VVRPKSPNYSIDAI+I G
Sbjct: 61  FKLYTRQSHRRRNRCRSCLFCLLAILAILIILLGITLAVFYFVVRPKSPNYSIDAISISG 120

Query: 121 LNSTASSSSAISPVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLSDGVLPAFFQPAN 180
           LN+   +SSAISPVF+++VRADNPNKKIGIYY T SSV+IY S+EKLS+GVLP FFQP+ 
Sbjct: 121 LNNL--TSSAISPVFNLSVRADNPNKKIGIYYLTGSSVRIYSSNEKLSEGVLPDFFQPSK 180

Query: 181 NVTVFQSSVRGSGVNLSKQASKALIDSQKRRAVPFKVEIRAPIKLKIGSVKTWKIRVKVT 240
           NV+V ++ VRG+GVNLS  A   +I+  K+RAV  KVEI  PIK+KIGSVK+WKI+VKV 
Sbjct: 181 NVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAVLLKVEIGVPIKVKIGSVKSWKIKVKVN 240

Query: 241 CDVTVNQLAAAAKIVSKNCDYNVKLW 265
           CDVTV++L AAAKIV KNCDY+VK+W
Sbjct: 241 CDVTVDELTAAAKIVKKNCDYSVKIW 258

[Close]

BLAST of Cp4.1LG18g01210 vs. TrEMBL
Match: A0A0S3RK74_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G055600 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 3.0e-85
Identity = 166/274 (60.58%), Postives = 207/274 (75.55%), Query Frame = 1


Query: 1   MADRVHPAESP---------RPSTSSAVSDSKPPSPSADKPTPAPGTYVIQLPKDQIYRV 60
           MADRVHP +SP          P  SS V  +  P PS +KP P+PGTYVI++PKDQ+YRV
Sbjct: 1   MADRVHPRDSPPLSAESQSASPQDSSVVPQALRPPPS-EKPVPSPGTYVIKIPKDQVYRV 60

Query: 61  PPPENAHRFELYTRRKNRRSRCCFCLCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYSI 120
           PP ENA R++ YT RK+RRSRCC C CWL+GIL++LIVLLGIA  IFYLV RPK+P Y+I
Sbjct: 61  PPAENARRYDQYTHRKHRRSRCCSCCCWLIGILSILIVLLGIAAGIFYLVFRPKAPKYTI 120

Query: 121 DAIAIRGLNSTASSSS-AISPVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLSDGVL 180
           + IAIRG+N T+ SS  AISP F+V V+ADNPN KIGIYY  DSS +++++D +L +G L
Sbjct: 121 EDIAIRGINVTSPSSDVAISPEFNVTVKADNPNDKIGIYYLKDSSAEVFYNDARLCNGAL 180

Query: 181 PAFFQPANNVTVFQSSVRGSGVNLSKQASKALIDSQKRRAVPFKVEIRAPIKLKIGSVKT 240
           PAF QP+NNVTVF   ++G+G+ L  +  K+L++SQ +R VP  V IRAP+K+K+GSVKT
Sbjct: 181 PAFHQPSNNVTVFGMVLKGNGIELRSEDRKSLVESQTKRKVPLTVRIRAPVKIKVGSVKT 240

Query: 241 WKIRVKVTCDVTVNQLAAAAKIVSKNCDYNVKLW 265
           WKI VK+ CDVTVN L A AKIVSK CDY V LW
Sbjct: 241 WKITVKLDCDVTVNDLTAQAKIVSKRCDYEVDLW 273

[Close]

BLAST of Cp4.1LG18g01210 vs. TrEMBL
Match: A0A0L9UVC0_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g041700 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 3.0e-85
Identity = 166/274 (60.58%), Postives = 207/274 (75.55%), Query Frame = 1


Query: 1   MADRVHPAESP---------RPSTSSAVSDSKPPSPSADKPTPAPGTYVIQLPKDQIYRV 60
           MADRVHP +SP          P  SS V  +  P PS +KP P+PGTYVI++PKDQ+YRV
Sbjct: 1   MADRVHPRDSPPLSAESQSASPQDSSVVPQALRPPPS-EKPVPSPGTYVIKIPKDQVYRV 60

Query: 61  PPPENAHRFELYTRRKNRRSRCCFCLCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYSI 120
           PP ENA R++ YT RK+RRSRCC C CWL+GIL++LIVLLGIA  IFYLV RPK+P Y+I
Sbjct: 61  PPAENARRYDQYTHRKHRRSRCCSCCCWLIGILSILIVLLGIAAGIFYLVFRPKAPKYTI 120

Query: 121 DAIAIRGLNSTASSSS-AISPVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLSDGVL 180
           + IAIRG+N T+ SS  AISP F+V V+ADNPN KIGIYY  DSS +++++D +L +G L
Sbjct: 121 EDIAIRGINVTSPSSDVAISPEFNVTVKADNPNDKIGIYYLKDSSAEVFYNDARLCNGAL 180

Query: 181 PAFFQPANNVTVFQSSVRGSGVNLSKQASKALIDSQKRRAVPFKVEIRAPIKLKIGSVKT 240
           PAF QP+NNVTVF   ++G+G+ L  +  K+L++SQ +R VP  V IRAP+K+K+GSVKT
Sbjct: 181 PAFHQPSNNVTVFGMVLKGNGIELRSEDRKSLVESQTKRKVPLTVRIRAPVKIKVGSVKT 240

Query: 241 WKIRVKVTCDVTVNQLAAAAKIVSKNCDYNVKLW 265
           WKI VK+ CDVTVN L A AKIVSK CDY V LW
Sbjct: 241 WKITVKLDCDVTVNDLTAQAKIVSKRCDYEVDLW 273

[Close]

BLAST of Cp4.1LG18g01210 vs. TrEMBL
Match: I1JIQ7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G274400 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 4.4e-84
Identity = 161/273 (58.97%), Postives = 210/273 (76.92%), Query Frame = 1


Query: 1   MADRVHPAESPRPSTSS---AVSDS----KPP-SPSADKPTPAPGTYVIQLPKDQIYRVP 60
           MADRVHP+ SP  S  S   +  DS    KPP  PS++KP P PGTYVI++PKDQ+YRVP
Sbjct: 1   MADRVHPSHSPSVSADSQPASPQDSSVVPKPPLPPSSEKPVPPPGTYVIKIPKDQVYRVP 60

Query: 61  PPENAHRFELYTRRKNRRSRCCFCLCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYSID 120
           PPENA R++ YTRRK+RRSRCC C CWL+GIL +L+V L IA  + YLV RP+ P YSI+
Sbjct: 61  PPENARRYDQYTRRKHRRSRCCCCFCWLIGILFILVVFLAIAAGVLYLVFRPEEPKYSIE 120

Query: 121 AIAIRGLNSTA-SSSSAISPVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLSDGVLP 180
            IA+RG+N T+ SS++A+SPVF+V V+ADNPN KIGI Y  DSS ++++ D +L +G LP
Sbjct: 121 NIAVRGINLTSPSSTAAMSPVFNVTVKADNPNDKIGIRYLKDSSAEVFYKDARLCNGALP 180

Query: 181 AFFQPANNVTVFQSSVRGSGVNLSKQASKALIDSQKRRAVPFKVEIRAPIKLKIGSVKTW 240
           AF+QP+NNVTVF +++RG G+ L  +  +AL+++Q +R VP  V IRAP+K+K+GSVKTW
Sbjct: 181 AFYQPSNNVTVFGTALRGDGIELRSEVRRALLEAQTKRRVPLTVRIRAPVKIKVGSVKTW 240

Query: 241 KIRVKVTCDVTVNQLAAAAKIVSKNCDYNVKLW 265
           KI VKV C +TVN+L A AKIVSK C+Y+V LW
Sbjct: 241 KITVKVNCHMTVNELTARAKIVSKRCNYDVDLW 273

[Close]

BLAST of Cp4.1LG18g01210 vs. TrEMBL
Match: I1M7A6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G041700 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 9.7e-84
Identity = 161/273 (58.97%), Postives = 208/273 (76.19%), Query Frame = 1


Query: 1   MADRVHPAESPRPSTSS---AVSDS----KPPSP-SADKPTPAPGTYVIQLPKDQIYRVP 60
           MADRVHP+ SP  S  S   +  DS    KPPSP S +KP P PGTYVI++PKDQ+YRVP
Sbjct: 1   MADRVHPSHSPSVSADSQPPSPQDSSVVPKPPSPPSPEKPVPPPGTYVIKIPKDQVYRVP 60

Query: 61  PPENAHRFELYTRRKNRRSRCCFCLCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYSID 120
           PPENA R++ Y RRK+RRSRCC C CWL+GIL +L+VLL IA  + YLV RP++P YSI+
Sbjct: 61  PPENARRYDQYARRKHRRSRCCCCFCWLIGILFILVVLLAIAAGVLYLVFRPEAPKYSIE 120

Query: 121 AIAIRGLNSTASSS-SAISPVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLSDGVLP 180
            I +RG+N T+ SS +AISP F+V V+ADNPN KIGI Y  DSS ++++ D +L +G LP
Sbjct: 121 NITVRGINLTSPSSVAAISPEFNVTVKADNPNDKIGIRYLKDSSAEVFYKDARLCNGALP 180

Query: 181 AFFQPANNVTVFQSSVRGSGVNLSKQASKALIDSQKRRAVPFKVEIRAPIKLKIGSVKTW 240
           AF+QP+NNVTVF +++RG G+ L  +  +AL+++Q +R VP  V IRAP+K+K+GS++TW
Sbjct: 181 AFYQPSNNVTVFGTALRGDGIELRSEDRRALLEAQTKRRVPLTVRIRAPVKIKVGSIRTW 240

Query: 241 KIRVKVTCDVTVNQLAAAAKIVSKNCDYNVKLW 265
           KI VKV CDVTVN+L A AKIVSK C Y+V LW
Sbjct: 241 KITVKVNCDVTVNELTAQAKIVSKRCSYDVDLW 273

[Close]

BLAST of Cp4.1LG18g01210 vs. TAIR10
Match: AT2G27080.1 (AT2G27080.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 252.3 bits (643), Expect = 3.3e-67
Identity = 130/264 (49.24%), Postives = 185/264 (70.08%), Query Frame = 1


Query: 1   MADRVHPAESPRPSTSSAVSDSKPPSPSADKPTPAPGTYVIQLPKDQIYRVPPPENAHRF 60
           MA+RV+PA+SP  S   + + S    P   KP P P TYVIQ+PKDQIYR+PPPENAHRF
Sbjct: 1   MAERVYPADSPPQSGQFSGNFSSGEFPK--KPAPPPSTYVIQVPKDQIYRIPPPENAHRF 60

Query: 61  ELYTRRKNRRSRCCFCLCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYSIDAIAIRGLN 120
           E  +R+K  RS C  C C  L  + +LIVL GI+ A+ YL+ RP++P YSI+  ++ G+N
Sbjct: 61  EQLSRKKTNRSNCRCCFCSFLAAVFILIVLAGISFAVLYLIYRPEAPKYSIEGFSVSGIN 120

Query: 121 STASSSSAISPVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLSDGVLPAFFQPANNV 180
              +S+S ISP F+V VR+ N N KIG+YY+ +SSV +Y++D  +S+GV+P F+QPA NV
Sbjct: 121 --LNSTSPISPSFNVTVRSRNGNGKIGVYYEKESSVDVYYNDVDISNGVMPVFYQPAKNV 180

Query: 181 TVFQSSVRGSGVNLSKQASKALIDSQKRRAVPFKVEIRAPIKLKIGSVKTWKIRVKVTCD 240
           TV +  + GS + L+    K + +   ++ VPFK++I+AP+K+K GSVKTW + V V CD
Sbjct: 181 TVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVPFKLKIKAPVKIKFGSVKTWTMIVNVDCD 240

Query: 241 VTVNQLAAAAKIVSKNCDYNVKLW 265
           VTV++L A ++IVS+ C ++V LW
Sbjct: 241 VTVDKLTAPSRIVSRKCSHDVDLW 260

[Close]

BLAST of Cp4.1LG18g01210 vs. TAIR10
Match: AT5G21130.1 (AT5G21130.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 210.3 bits (534), Expect = 1.4e-54
Identity = 111/259 (42.86%), Postives = 161/259 (62.16%), Query Frame = 1


Query: 5   VHPAESPRPSTSSAVSDSKPPSPSADKPTPAPGTYVIQLPKDQIYRVPPPENAHRFELYT 64
           VH  + P   T+ + S          +  P PGTYVI+LPKDQIYRVPPPENAHR+E  +
Sbjct: 24  VHRIKHPSLDTNDSSSSRYSVDSQKSRIGPPPGTYVIKLPKDQIYRVPPPENAHRYEYLS 83

Query: 65  RRKNRRSRCCFCLCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYSIDAIAIRGLNSTAS 124
           RRK  +S C  CLC+ L  L ++IVL  IA   FYLV +P  P +S+  +++ G+N T  
Sbjct: 84  RRKTNKSCCRRCLCYSLSALLIIIVLAAIAFGFFYLVYQPHKPQFSVSGVSVTGINLT-- 143

Query: 125 SSSAISPVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLSDGVLPAFFQPANNVTVFQ 184
           SSS  SPV  + +R+ N   K+G+ Y+  +   ++F+  KL +G   AF QPA NVTV  
Sbjct: 144 SSSPFSPVIRIKLRSQNVKGKLGLIYEKGNEADVFFNGTKLGNGEFTAFKQPAGNVTVIV 203

Query: 185 SSVRGSGVNLSKQASKALIDSQKRRAVPFKVEIRAPIKLKIGSVKTWKIRVKVTCDVTVN 244
           + ++GS V L   + K L +SQK+  VPF + I+AP+K K+GSV TW + + V C +TV+
Sbjct: 204 TVLKGSSVKLKSSSRKELTESQKKGKVPFGLRIKAPVKFKVGSVTTWTMTITVDCKITVD 263

Query: 245 QLAAAAKIVSKNCDYNVKL 264
           +L A+A + ++NC+  + L
Sbjct: 264 KLTASATVKTENCETGLSL 280

[Close]

BLAST of Cp4.1LG18g01210 vs. TAIR10
Match: AT5G36970.1 (AT5G36970.1 NDR1/HIN1-like 25)

HSP 1 Score: 125.2 bits (313), Expect = 6.1e-29
Identity = 68/200 (34.00%), Postives = 112/200 (56.00%), Query Frame = 1


Query: 66  RKNRRSRCCFCLCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYSIDAIAIRGLNSTASS 125
           +K  RS  C C+C+ L +L +LIV++G  V I YLV RPK P+Y+ID + +         
Sbjct: 51  KKGSRSCWCRCVCYTLLVLFLLIVIVGAIVGILYLVFRPKFPDYNIDRLQLTRFQLNQDL 110

Query: 126 SSAISPVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLSDGVLPAFFQPANNVTVFQS 185
           S  +S  F+V + A NPN+KIGIYY+  S + + +   ++S+G LP F+Q   N T+   
Sbjct: 111 S--LSTAFNVTITAKNPNEKIGIYYEDGSKISVLYMQTRISNGSLPKFYQGHENTTIILV 170

Query: 186 SVRGSGVNLSKQASKALIDSQKRRAVPFKVEIRAPIKLKIGSVKTWKIRVKVTCDVTVNQ 245
            + G   N +   +      +   ++P ++ +  P+++K+G +K  K+R  V C V+V+ 
Sbjct: 171 EMTGFTQNATSLMTTLQEQQRLTGSIPLRIRVTQPVRIKLGKLKLMKVRFLVRCGVSVDS 230

Query: 246 LAA--AAKIVSKNCDYNVKL 264
           LAA    ++ S NC Y  +L
Sbjct: 231 LAANSVIRVRSSNCKYRFRL 248

[Close]

BLAST of Cp4.1LG18g01210 vs. TAIR10
Match: AT1G65690.1 (AT1G65690.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 124.8 bits (312), Expect = 8.0e-29
Identity = 77/262 (29.39%), Postives = 133/262 (50.76%), Query Frame = 1


Query: 4   RVHPAESPRPSTSSAVSDSKPPSPSADKPTPAPGTYVIQLPKDQIYRVPPPENAHRFELY 63
           +++P + P  +T+   +   P   S  +        + Q P+  +   PP          
Sbjct: 6   KIYPVQDPEAATARPTAPLVPRGSSRSEHGDPSKVPLNQRPQRFVPLAPP---------- 65

Query: 64  TRRKNRRSRCCFCLCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYSIDAIAIRGLNSTA 123
              K RRS CC C C+    L +L+V +G ++ I YLV +PK P+YSID + +       
Sbjct: 66  ---KKRRSCCCRCFCYTFCFLLLLVVAVGASIGILYLVFKPKLPDYSIDRLQLTRF--AL 125

Query: 124 SSSSAISPVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLSDGVLPAFFQPANNVTVF 183
           +  S+++  F+V + A NPN+KIGIYY+  S + +++ + +LS+G LP F+Q   N TV 
Sbjct: 126 NQDSSLTTAFNVTITAKNPNEKIGIYYEDGSKITVWYMEHQLSNGSLPKFYQGHENTTVI 185

Query: 184 QSSVRGSGVNLSKQASKALIDSQKRRAVPFKVEIRAPIKLKIGSVKTWKIRVKVTCDVTV 243
              + G   N S   +      Q+   +P ++ +  P+++K G +K +++R  V C V V
Sbjct: 186 YVEMTGQTQNASGLRTTLEEQQQRTGNIPLRIRVNQPVRVKFGKLKLFEVRFLVRCGVFV 245

Query: 244 NQLAA--AAKIVSKNCDYNVKL 264
           + LA     KI S +C + ++L
Sbjct: 246 DSLATNNVIKIQSSSCKFRLRL 252

[Close]

BLAST of Cp4.1LG18g01210 vs. TAIR10
Match: AT1G54540.1 (AT1G54540.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 118.2 bits (295), Expect = 7.5e-27
Identity = 74/233 (31.76%), Postives = 121/233 (51.93%), Query Frame = 1


Query: 33  TPAPGTYVIQLPKDQIYRVPPPENAHRFELYTRRKNRRSRCCFCLCWLLGILAVLIVLLG 92
           TPAPG  V+ LP  +   +PPP    +          R+ CC   CW+L +L + ++ L 
Sbjct: 22  TPAPGKTVL-LPVQR--PIPPPVIPSK---------NRNMCCKIFCWVLSLLVIALIALA 81

Query: 93  IAVAIFYLVVRPKSPNYSIDAIAIRGLNSTASSSSAISPVFDVAVRADNPNKKIGIYYQT 152
           IAVA+ Y V  PK P+Y ++++ +  L      S  +S  F V + A NPN+KIGIYY+ 
Sbjct: 82  IAVAVVYFVFHPKLPSYEVNSLRVTNLGINLDLS--LSAEFKVEITARNPNEKIGIYYEK 141

Query: 153 DSSVQIYFSDEKLSDGVLPAFFQPANNVTVFQSSVRGSGVNLSKQASKALIDSQKRRAVP 212
              + +++   KL +G +P F+Q   NVT    ++ G           AL   Q+   VP
Sbjct: 142 GGHIGVWYDKTKLCEGPIPRFYQGHRNVTKLNVALTGR-AQYGNTVLAALQQQQQTGRVP 201

Query: 213 FKVEIRAPIKLKIGSVKTWKIRVKVTCDVTVNQLAA--AAKIVSKNCDYNVKL 264
             +++ AP+ +K+G++K  KIR+  +C + V+ L+      I + +C +  KL
Sbjct: 202 LDLKVNAPVAIKLGNLKMKKIRILGSCKLVVDSLSTNNNINIKASDCSFKAKL 239

[Close]

BLAST of Cp4.1LG18g01210 vs. NCBI nr
Match: gi|659100419|ref|XP_008451090.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 345.1 bits (884), Expect = 1.1e-91
Identity = 186/267 (69.66%), Postives = 220/267 (82.40%), Query Frame = 1


Query: 1   MADRVHPA-ESPRPSTSSAVSDSKPPSPSADKPTPAPGTYVIQLPKDQIYRVPPPENAHR 60
           MADRVHP  +SPRPSTSS +SD+  P      P+P PGTYVIQLPKDQIYRVPPPENAHR
Sbjct: 1   MADRVHPTVDSPRPSTSSTLSDTTKP------PSPPPGTYVIQLPKDQIYRVPPPENAHR 60

Query: 61  FELYTRR-KNRRSRCCFCLCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYSIDAIAIRG 120
           F+LYTR+ + RR+ C  CL  LL IL +LI+LLGI VA+FYLVVRPKSPNYSIDAI++ G
Sbjct: 61  FQLYTRQNRRRRNPCRSCLFCLLAILILLIILLGITVAVFYLVVRPKSPNYSIDAISVSG 120

Query: 121 LNS-TASSSSAISPVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLSDGVLPAFFQPA 180
           LN  T+SSSSAISP+F++ VRADNPNKKIGIYY T SSV+IYFS+EKLS+GVLP FFQPA
Sbjct: 121 LNLLTSSSSSAISPLFNLTVRADNPNKKIGIYYLTGSSVRIYFSNEKLSEGVLPDFFQPA 180

Query: 181 NNVTVFQSSVRGSGVNLSKQASKALIDSQKRRAVPFKVEIRAPIKLKIGSVKTWKIRVKV 240
            NV+V +S VRG+GVNLS  A   LI+S K+R V  KVEI  PIK+K+G+VK+WK+RVKV
Sbjct: 181 KNVSVLRSVVRGTGVNLSSGAKNGLIESVKQRVVVLKVEIGVPIKVKVGAVKSWKMRVKV 240

Query: 241 TCDVTVNQLAAAAKIVSKNCDYNVKLW 265
            CDVTV++L  AAKIV KNCDY+VK+W
Sbjct: 241 NCDVTVDELTTAAKIVKKNCDYSVKIW 261

[Close]

BLAST of Cp4.1LG18g01210 vs. NCBI nr
Match: gi|449452811|ref|XP_004144152.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 339.3 bits (869), Expect = 5.8e-90
Identity = 184/266 (69.17%), Postives = 221/266 (83.08%), Query Frame = 1


Query: 1   MADRVHP-AESPRPSTSSAVSDSKPPSPSADKPTPAPGTYVIQLPKDQIYRVPPPENAHR 60
           MADRVHP A+SPRPSTSS +SD+  PS      +P PGTYVIQLPKDQIYR+PPPENAHR
Sbjct: 1   MADRVHPTADSPRPSTSSTLSDTTKPS------SPPPGTYVIQLPKDQIYRLPPPENAHR 60

Query: 61  FELYTRRKNRR-SRCCFCLCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYSIDAIAIRG 120
           F+LYTR+ +RR +RC  CL  LL ILA+LI+LLGI +A+FY VVRPKSPNYSIDAI+I G
Sbjct: 61  FKLYTRQSHRRRNRCRSCLFCLLAILAILIILLGITLAVFYFVVRPKSPNYSIDAISISG 120

Query: 121 LNSTASSSSAISPVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLSDGVLPAFFQPAN 180
           LN+   +SSAISPVF+++VRADNPNKKIGIYY T SSV+IY S+EKLS+GVLP FFQP+ 
Sbjct: 121 LNNL--TSSAISPVFNLSVRADNPNKKIGIYYLTGSSVRIYSSNEKLSEGVLPDFFQPSK 180

Query: 181 NVTVFQSSVRGSGVNLSKQASKALIDSQKRRAVPFKVEIRAPIKLKIGSVKTWKIRVKVT 240
           NV+V ++ VRG+GVNLS  A   +I+  K+RAV  KVEI  PIK+KIGSVK+WKI+VKV 
Sbjct: 181 NVSVLRAVVRGAGVNLSSGAKNEIIEWVKQRAVLLKVEIGVPIKVKIGSVKSWKIKVKVN 240

Query: 241 CDVTVNQLAAAAKIVSKNCDYNVKLW 265
           CDVTV++L AAAKIV KNCDY+VK+W
Sbjct: 241 CDVTVDELTAAAKIVKKNCDYSVKIW 258

[Close]

BLAST of Cp4.1LG18g01210 vs. NCBI nr
Match: gi|920703488|gb|KOM46713.1| (hypothetical protein LR48_Vigan07g041700 [Vigna angularis])

HSP 1 Score: 323.2 bits (827), Expect = 4.3e-85
Identity = 166/274 (60.58%), Postives = 207/274 (75.55%), Query Frame = 1


Query: 1   MADRVHPAESP---------RPSTSSAVSDSKPPSPSADKPTPAPGTYVIQLPKDQIYRV 60
           MADRVHP +SP          P  SS V  +  P PS +KP P+PGTYVI++PKDQ+YRV
Sbjct: 1   MADRVHPRDSPPLSAESQSASPQDSSVVPQALRPPPS-EKPVPSPGTYVIKIPKDQVYRV 60

Query: 61  PPPENAHRFELYTRRKNRRSRCCFCLCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYSI 120
           PP ENA R++ YT RK+RRSRCC C CWL+GIL++LIVLLGIA  IFYLV RPK+P Y+I
Sbjct: 61  PPAENARRYDQYTHRKHRRSRCCSCCCWLIGILSILIVLLGIAAGIFYLVFRPKAPKYTI 120

Query: 121 DAIAIRGLNSTASSSS-AISPVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLSDGVL 180
           + IAIRG+N T+ SS  AISP F+V V+ADNPN KIGIYY  DSS +++++D +L +G L
Sbjct: 121 EDIAIRGINVTSPSSDVAISPEFNVTVKADNPNDKIGIYYLKDSSAEVFYNDARLCNGAL 180

Query: 181 PAFFQPANNVTVFQSSVRGSGVNLSKQASKALIDSQKRRAVPFKVEIRAPIKLKIGSVKT 240
           PAF QP+NNVTVF   ++G+G+ L  +  K+L++SQ +R VP  V IRAP+K+K+GSVKT
Sbjct: 181 PAFHQPSNNVTVFGMVLKGNGIELRSEDRKSLVESQTKRKVPLTVRIRAPVKIKVGSVKT 240

Query: 241 WKIRVKVTCDVTVNQLAAAAKIVSKNCDYNVKLW 265
           WKI VK+ CDVTVN L A AKIVSK CDY V LW
Sbjct: 241 WKITVKLDCDVTVNDLTAQAKIVSKRCDYEVDLW 273

[Close]

BLAST of Cp4.1LG18g01210 vs. NCBI nr
Match: gi|356501342|ref|XP_003519484.1| (PREDICTED: protein YLS9 [Glycine max])

HSP 1 Score: 319.3 bits (817), Expect = 6.3e-84
Identity = 161/273 (58.97%), Postives = 210/273 (76.92%), Query Frame = 1


Query: 1   MADRVHPAESPRPSTSS---AVSDS----KPP-SPSADKPTPAPGTYVIQLPKDQIYRVP 60
           MADRVHP+ SP  S  S   +  DS    KPP  PS++KP P PGTYVI++PKDQ+YRVP
Sbjct: 1   MADRVHPSHSPSVSADSQPASPQDSSVVPKPPLPPSSEKPVPPPGTYVIKIPKDQVYRVP 60

Query: 61  PPENAHRFELYTRRKNRRSRCCFCLCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYSID 120
           PPENA R++ YTRRK+RRSRCC C CWL+GIL +L+V L IA  + YLV RP+ P YSI+
Sbjct: 61  PPENARRYDQYTRRKHRRSRCCCCFCWLIGILFILVVFLAIAAGVLYLVFRPEEPKYSIE 120

Query: 121 AIAIRGLNSTA-SSSSAISPVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLSDGVLP 180
            IA+RG+N T+ SS++A+SPVF+V V+ADNPN KIGI Y  DSS ++++ D +L +G LP
Sbjct: 121 NIAVRGINLTSPSSTAAMSPVFNVTVKADNPNDKIGIRYLKDSSAEVFYKDARLCNGALP 180

Query: 181 AFFQPANNVTVFQSSVRGSGVNLSKQASKALIDSQKRRAVPFKVEIRAPIKLKIGSVKTW 240
           AF+QP+NNVTVF +++RG G+ L  +  +AL+++Q +R VP  V IRAP+K+K+GSVKTW
Sbjct: 181 AFYQPSNNVTVFGTALRGDGIELRSEVRRALLEAQTKRRVPLTVRIRAPVKIKVGSVKTW 240

Query: 241 KIRVKVTCDVTVNQLAAAAKIVSKNCDYNVKLW 265
           KI VKV C +TVN+L A AKIVSK C+Y+V LW
Sbjct: 241 KITVKVNCHMTVNELTARAKIVSKRCNYDVDLW 273

[Close]

BLAST of Cp4.1LG18g01210 vs. NCBI nr
Match: gi|950987645|ref|XP_014503816.1| (PREDICTED: protein YLS9-like [Vigna radiata var. radiata])

HSP 1 Score: 318.9 bits (816), Expect = 8.2e-84
Identity = 163/274 (59.49%), Postives = 205/274 (74.82%), Query Frame = 1


Query: 1   MADRVHPAESP---------RPSTSSAVSDSKPPSPSADKPTPAPGTYVIQLPKDQIYRV 60
           MADRVHP +SP          P  SS V  +  P PS +KP P PGTYVI++PKDQ+YRV
Sbjct: 1   MADRVHPRDSPPISAESQSASPQDSSVVPQALRPPPS-EKPVPPPGTYVIKIPKDQVYRV 60

Query: 61  PPPENAHRFELYTRRKNRRSRCCFCLCWLLGILAVLIVLLGIAVAIFYLVVRPKSPNYSI 120
           PP ENA R++ YT RK+RRSRCC C CWL+GIL +LIVLLGIA  IFYLV RP++P Y+I
Sbjct: 61  PPAENARRYDQYTHRKHRRSRCCCCCCWLIGILFILIVLLGIAAGIFYLVFRPEAPKYTI 120

Query: 121 DAIAIRGLNSTASSSSA-ISPVFDVAVRADNPNKKIGIYYQTDSSVQIYFSDEKLSDGVL 180
           + IA+RG+N T+ SS   ISP F+V V+ADNPN KIGIYY  DSS +++++D +L +G +
Sbjct: 121 EDIAVRGINVTSPSSDVTISPEFNVTVKADNPNDKIGIYYLKDSSAEVFYNDARLCNGAI 180

Query: 181 PAFFQPANNVTVFQSSVRGSGVNLSKQASKALIDSQKRRAVPFKVEIRAPIKLKIGSVKT 240
           PAF QP+NNVTVF   ++G+G+ L  +  K+L++SQ +R VP  V IRAP+K+K+GSVKT
Sbjct: 181 PAFHQPSNNVTVFGMVLKGNGIELRSEDRKSLVESQTKRKVPLTVRIRAPVKIKVGSVKT 240

Query: 241 WKIRVKVTCDVTVNQLAAAAKIVSKNCDYNVKLW 265
           WKI VKV CDVTVN+L A AKIVSK CDY V LW
Sbjct: 241 WKITVKVDCDVTVNELTAQAKIVSKRCDYKVDLW 273

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g01210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLS9_ARATH	2.9e-12	25.81	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]
NHL3_ARATH	1.1e-08	26.86	NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1	[more]

BLAST of Cp4.1LG18g01210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX01_CUCSA	4.1e-90	69.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G601000 PE=4 SV=1	[more]
A0A0S3RK74_PHAAN	3.0e-85	60.58	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G055600 PE=...	[more]
A0A0L9UVC0_PHAAN	3.0e-85	60.58	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g041700 PE=4 SV=1	[more]
I1JIQ7_SOYBN	4.4e-84	58.97	Uncharacterized protein OS=Glycine max GN=GLYMA_02G274400 PE=4 SV=1	[more]
I1M7A6_SOYBN	9.7e-84	58.97	Uncharacterized protein OS=Glycine max GN=GLYMA_14G041700 PE=4 SV=1	[more]

BLAST of Cp4.1LG18g01210 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27080.1	3.3e-67	49.24	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G21130.1	1.4e-54	42.86	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G36970.1	6.1e-29	34.00	NDR1/HIN1-like 25	[more]
AT1G65690.1	8.0e-29	29.39	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G54540.1	7.5e-27	31.76	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of Cp4.1LG18g01210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659100419\|ref\|XP_008451090.1\|	1.1e-91	69.66	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|449452811\|ref\|XP_004144152.1\|	5.8e-90	69.17	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|920703488\|gb\|KOM46713.1\|	4.3e-85	60.58	hypothetical protein LR48_Vigan07g041700 [Vigna angularis]	[more]
gi\|356501342\|ref\|XP_003519484.1\|	6.3e-84	58.97	PREDICTED: protein YLS9 [Glycine max]	[more]
gi\|950987645\|ref\|XP_014503816.1\|	8.2e-84	59.49	PREDICTED: protein YLS9-like [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g01210.1	Cp4.1LG18g01210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 137..239 score: 6.3
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 14..264 score: 7.9E
None	No IPR available	PANTHER	PTHR31852:SF0	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 14..264 score: 7.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG18g01210	Cucsa.142720	Cucumber (Gy14) v1	cgycpeB0382
Cp4.1LG18g01210	CmaCh10G009770	Cucurbita maxima (Rimu)	cmacpeB080
Cp4.1LG18g01210	CmaCh11G008120	Cucurbita maxima (Rimu)	cmacpeB126
Cp4.1LG18g01210	CmoCh11G008150	Cucurbita moschata (Rifu)	cmocpeB104
Cp4.1LG18g01210	CmoCh10G010290	Cucurbita moschata (Rifu)	cmocpeB055
Cp4.1LG18g01210	Cla011071	Watermelon (97103) v1	cpewmB355
Cp4.1LG18g01210	Csa1G601000	Cucumber (Chinese Long) v2	cpecuB349
Cp4.1LG18g01210	MELO3C015630	Melon (DHL92) v3.5.1	cpemeB329
Cp4.1LG18g01210	ClCG03G014140	Watermelon (Charleston Gray)	cpewcgB327
Cp4.1LG18g01210	CSPI01G29680	Wild cucumber (PI 183967)	cpecpiB350
Cp4.1LG18g01210	Lsi06G004390	Bottle gourd (USVL1VR-Ls)	cpelsiB299
Cp4.1LG18g01210	MELO3C015630.2	Melon (DHL92) v3.6.1	cpemedB387
Cp4.1LG18g01210	CsaV3_1G042120	Cucumber (Chinese Long) v3	cpecucB0428
Cp4.1LG18g01210	Bhi02G001408	Wax gourd	cpewgoB0460
Cp4.1LG18g01210	CsGy1G028990	Cucumber (Gy14) v2	cgybcpeB039
Cp4.1LG18g01210	Carg16979	Silver-seed gourd	carcpeB0655
Cp4.1LG18g01210	Carg02772	Silver-seed gourd	carcpeB1276
Cp4.1LG18g01210	Carg18010	Silver-seed gourd	carcpeB0247

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG18g01210	Cp4.1LG16g09310	Cucurbita pepo (Zucchini)	cpecpeB287
Cp4.1LG18g01210	Cp4.1LG04g11720	Cucurbita pepo (Zucchini)	cpecpeB363

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG18g01210	Silver-seed gourd	carcpeB0735
Cp4.1LG18g01210	Cucurbita pepo (Zucchini)	cpecpeB369
Cp4.1LG18g01210	Cucurbita maxima (Rimu)	cmacpeB567
Cp4.1LG18g01210	Cucurbita maxima (Rimu)	cmacpeB632