Cp4.1LG17g10960 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g10960
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Amaranthin-like lectin
Location	Cp4.1LG17 : 8257216 .. 8258363 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACGGAAAGAGGTAAGAATGACGCAACTTCCCAAATTTGGAGTACTAAAGTCAAAGTGCAACGACAACTACTTGCGCTATATCAATCAACTTGGTTCCCGGATACGTTCCTTTCTACATTATTCAGGTCGGGAGATTCTTAGTCCATTCACAAAGTTCGAGTTCGAGCAAGCTAAATCAGACCCATCTTTATTCCATATAAAATGTTGTTACAACAATAAGTACTGGGTTAGTTGGGCTTGTGACCATGGTTTTATTATAGCCGAGCGGAGCTGAGGACAAAGAGGAAGATAGATCCAAATGGACATGCACGTTATTTCGTCCCGTTTATGATAGTAGTTAGCAATCCTATCGATTTCAACATGTCATCTTGGTCTCAACGTGGTGTTGTGGAGGGCTGGTTCTCATTTTAGAGATTGCTTACGTGCACACTTGTCAACTCCTGATAGACACCTTTGTGATCTCAGTGTAGTTATCGATTGGGAATCAATGTGGTTATTACCAAAGTTCATTGTTTTTGAATCGGAAAATGGTTTTTATCTCTCGGGTCGTAGACGTCATAACCTTCCATATTTACCGTTTTTATCCCAAAGTCTTGAAGATCCTAGCATTATGATGGAGACTATCAGCAACGTAGTGTTTTATCTTCCCGGAGCAAAAATCTATAACGAAGTTGTTATCGTGTTAGCAACTAGAGAAGCTAAAAACAATTTCAACGTACCCAATACTGTACGTATCACTTTCTGATATATAGATAATAGAACCCGTTCATGAGCTTCTTCAATCTCAACCAAATTGGATGTCAAGACTAGAATTAAGTCGGGAGTTCCCCTCGTTAGTGATGGAAGGAAGTTCGATATATCGTCAGCTAAATTTGATGGAGAATACAAATGGGGAGAAATTATAACAGTTTCAAAGCCAAAAGAGGTAATATACGAGACAATTATACCACCAAACAGCGCTAGTGTCATTACCTTAATAGTAACTAAGGGATCATATGAGATTCCATTCTCGTACAAACAAGCCGACGTCCTCATAGGTGGGAAAGAAGTTGAATATCATTTAGAGGATGGTATTTACCGTGGCACCAACTTCTACGACCTTAAATATGATGTTAGGACTACAAACATTTGTGGAGGTCCGAACGAA

mRNA sequence

CACGGAAAGAGGTAAGAATGACGCAACTTCCCAAATTTGGAGTACTAAAGTCAAAGTGCAACGACAACTACTTGCGCTATATCAATCAACTTGGTTCCCGGATACGTTCCTTTCTACATTATTCAGCTTCTTCAATCTCAACCAAATTGGATGTCAAGACTAGAATTAAGTCGGGAGTTCCCCTCGTTAGTGATGGAAGGAAGTTCGATATATCGTCAGCTAAATTTGATGGAGAATACAAATGGGGAGAAATTATAACAGTTTCAAAGCCAAAAGAGGTAATATACGAGACAATTATACCACCAAACAGCGCTAGTGTCATTACCTTAATAGTAACTAAGGGATCATATGAGATTCCATTCTCGTACAAACAAGCCGACGTCCTCATAGGTGGGAAAGAAGTTGAATATCATTTAGAGGATGGTATTTACCGTGGCACCAACTTCTACGACCTTAAATATGATGTTAGGACTACAAACATTTGTGGAGGTCCGAACGAA

Coding sequence (CDS)

ATGACGCAACTTCCCAAATTTGGAGTACTAAAGTCAAAGTGCAACGACAACTACTTGCGCTATATCAATCAACTTGGTTCCCGGATACGTTCCTTTCTACATTATTCAGCTTCTTCAATCTCAACCAAATTGGATGTCAAGACTAGAATTAAGTCGGGAGTTCCCCTCGTTAGTGATGGAAGGAAGTTCGATATATCGTCAGCTAAATTTGATGGAGAATACAAATGGGGAGAAATTATAACAGTTTCAAAGCCAAAAGAGGTAATATACGAGACAATTATACCACCAAACAGCGCTAGTGTCATTACCTTAATAGTAACTAAGGGATCATATGAGATTCCATTCTCGTACAAACAAGCCGACGTCCTCATAGGTGGGAAAGAAGTTGAATATCATTTAGAGGATGGTATTTACCGTGGCACCAACTTCTACGACCTTAAATATGATGTTAGGACTACAAACATTTGTGGAGGTCCGAACGAA

Protein sequence

MTQLPKFGVLKSKCNDNYLRYINQLGSRIRSFLHYSASSISTKLDVKTRIKSGVPLVSDGRKFDISSAKFDGEYKWGEIITVSKPKEVIYETIIPPNSASVITLIVTKGSYEIPFSYKQADVLIGGKEVEYHLEDGIYRGTNFYDLKYDVRTTNICGGPNE

Homology

[Close]

BLAST of Cp4.1LG17g10960 vs. TrEMBL
Match: A0A0A0K956_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G080920 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.5e-23
Identity = 62/122 (50.82%), Postives = 84/122 (68.85%), Query Frame = 1


Query: 38  SSISTKL-DVKTRIKSGVPLVSDGRKFDISSAKFDGEYKWGEIITVSKPKE-VIYETIIP 97
           SSIS KL +VKTRIKSGVPL+ DG     ++ KF GEYKWGE  + S+    + +E  +P
Sbjct: 360 SSISKKLVEVKTRIKSGVPLILDGNAIS-TTCKFFGEYKWGETTSKSENTNGITHELTVP 419

Query: 98  PNSASVITLIVTKGSYEIPFSYKQADVLIGG--KEVEYHLEDGIYRGTNFYDLKYDVRTT 156
             S+ + TL  TKGS +IPFSYKQ+D+L+ G   +VE+ L+DG+Y GTN+Y+  YDV+  
Sbjct: 420 AMSSIIGTLYATKGSCDIPFSYKQSDILLAGNNNQVEFSLDDGVYHGTNYYNFHYDVKIV 479

[Close]

BLAST of Cp4.1LG17g10960 vs. TrEMBL
Match: F6HZZ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06110 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.1e-19
Identity = 48/113 (42.48%), Postives = 75/113 (66.37%), Query Frame = 1


Query: 39  SISTKLDVKTRIKSGVPLVSDGRKFDISSAKFDGEYKWGEIITVSKPKEVIYETIIPPNS 98
           S+S KL VK  ++SGVP ++DG K +ISS +F G Y+WGE  +V+   E +Y   +P  +
Sbjct: 351 SVSLKLGVKMTMESGVPFIADG-KLEISS-EFSGTYEWGETESVTTAMETVYNVTVPAMT 410

Query: 99  ASVITLIVTKGSYEIPFSYKQADVLIGGKEVEYHLEDGIYRGTNFYDLKYDVR 152
              +++I T+GS ++PFSY Q D L  GK V Y+++DG+Y G N +++KY  +
Sbjct: 411 KVTVSMIATQGSCDVPFSYTQHDTLTDGKNVVYNMDDGVYVGVNCFNVKYHTK 461

[Close]

BLAST of Cp4.1LG17g10960 vs. TrEMBL
Match: D7U3H5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06000 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 47/113 (41.59%), Postives = 74/113 (65.49%), Query Frame = 1


Query: 39  SISTKLDVKTRIKSGVPLVSDGRKFDISSAKFDGEYKWGEIITVSKPKEVIYETIIPPNS 98
           S+S KL VK  ++SGVP ++DG K +ISS +F G Y+WG   +V+   E +Y   +P  +
Sbjct: 351 SVSLKLGVKITMESGVPFIADG-KLEISS-EFSGTYEWGGTESVTTAMETLYNVTVPAMT 410

Query: 99  ASVITLIVTKGSYEIPFSYKQADVLIGGKEVEYHLEDGIYRGTNFYDLKYDVR 152
              +++I T+GS ++PFSY Q D L  GK V Y+++DG+Y G N +++KY  +
Sbjct: 411 RVTVSMIATQGSCDVPFSYSQRDTLTDGKNVIYNMDDGVYNGVNCFNVKYQTK 461

[Close]

BLAST of Cp4.1LG17g10960 vs. TrEMBL
Match: F6HZZ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06090 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.3e-18
Identity = 48/117 (41.03%), Postives = 77/117 (65.81%), Query Frame = 1


Query: 39  SISTKLDVKTRIKSGVPLVSDGRKFDISSAKFDGEYKWGEIITVSKPKEVIYETIIPPNS 98
           S+S KL VK  ++SGVP +++G K +ISS +F G Y+WGE  +V+   E +Y   +P  +
Sbjct: 351 SVSLKLGVKITMESGVPFIANG-KLEISS-EFSGAYEWGETESVTTAMETMYNVTVPAMT 410

Query: 99  ASVITLIVTKGSYEIPFSYKQADVLIGGKEVEYHLEDGIYRGTNFYDLKYDVRTTNI 156
              +++I TKGS ++PFSY Q D L  GK V  +++DG+Y G N +++KY+ +  N+
Sbjct: 411 RVTVSMIGTKGSCDVPFSYTQRDTLTDGKIVVDNMDDGVYVGVNCFNVKYETKEENL 465

[Close]

BLAST of Cp4.1LG17g10960 vs. TrEMBL
Match: A0A0D9XU75_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.3e-18
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 1


Query: 38  SSISTKLDVKTRIKSGVPLVSDGRKFDISSAKFDGEYKWGEIITVSKPKEVIYETIIPPN 97
           S++S KL  +  I +G+P++  G      + +F+GEYKWG  +     + V YE  IPP 
Sbjct: 361 STVSWKLTAEASISAGIPMI--GEASVTVTNEFNGEYKWGSTLEKIIKQNVQYEATIPPK 420

Query: 98  SASVITLIVTKGSYEIPFSYKQADVLIGGKEVEYHLEDGIYRGTNFYDLKYD 150
           +   ++LI T+GS ++PFSYKQ DVL  G+ V Y + DG+Y G N YD KY+
Sbjct: 421 TRVTVSLIATQGSCDVPFSYKQEDVLYDGRTVTYTMNDGLYTGVNCYDFKYE 470

[Close]

BLAST of Cp4.1LG17g10960 vs. NCBI nr
Match: gi|449454680|ref|XP_004145082.1| (PREDICTED: uncharacterized protein LOC101206536 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 6.4e-23
Identity = 62/122 (50.82%), Postives = 84/122 (68.85%), Query Frame = 1


Query: 38  SSISTKL-DVKTRIKSGVPLVSDGRKFDISSAKFDGEYKWGEIITVSKPKE-VIYETIIP 97
           SSIS KL +VKTRIKSGVPL+ DG     ++ KF GEYKWGE  + S+    + +E  +P
Sbjct: 360 SSISKKLVEVKTRIKSGVPLILDGNAIS-TTCKFFGEYKWGETTSKSENTNGITHELTVP 419

Query: 98  PNSASVITLIVTKGSYEIPFSYKQADVLIGG--KEVEYHLEDGIYRGTNFYDLKYDVRTT 156
             S+ + TL  TKGS +IPFSYKQ+D+L+ G   +VE+ L+DG+Y GTN+Y+  YDV+  
Sbjct: 420 AMSSIIGTLYATKGSCDIPFSYKQSDILLAGNNNQVEFSLDDGVYHGTNYYNFHYDVKIV 479

[Close]

BLAST of Cp4.1LG17g10960 vs. NCBI nr
Match: gi|659120444|ref|XP_008460197.1| (PREDICTED: uncharacterized protein LOC103499082 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-22
Identity = 61/123 (49.59%), Postives = 84/123 (68.29%), Query Frame = 1


Query: 38  SSISTK-LDVKTRIKSGVPLVSDGRKFDISSAKFDGEYKWGEIITVSK-PKEVIYETIIP 97
           S ISTK ++VKT IKS VPL+ DG+ F  +S  F GEYKWGE I+ S+    + +E  +P
Sbjct: 306 SIISTKQVEVKTVIKSEVPLIVDGKIFSTASDYF-GEYKWGETISESENTNGITHEATVP 365

Query: 98  PNSASVITLIVTKGSYEIPFSYKQADVLIGGKE---VEYHLEDGIYRGTNFYDLKYDVRT 156
           P S  + TL  TKGS++IPFSYKQ+D+L  G     VE+ L+DG+Y GTN+Y+ +YD++ 
Sbjct: 366 PMSNIIGTLYATKGSFDIPFSYKQSDILFAGNNNNPVEFSLDDGVYHGTNYYNFQYDIKI 425

[Close]

BLAST of Cp4.1LG17g10960 vs. NCBI nr
Match: gi|225465427|ref|XP_002264911.1| (PREDICTED: uncharacterized protein LOC100263724 [Vitis vinifera])

HSP 1 Score: 102.4 bits (254), Expect = 7.3e-19
Identity = 48/113 (42.48%), Postives = 75/113 (66.37%), Query Frame = 1


Query: 39  SISTKLDVKTRIKSGVPLVSDGRKFDISSAKFDGEYKWGEIITVSKPKEVIYETIIPPNS 98
           S+S KL VK  ++SGVP ++DG K +ISS +F G Y+WGE  +V+   E +Y   +P  +
Sbjct: 351 SVSLKLGVKMTMESGVPFIADG-KLEISS-EFSGTYEWGETESVTTAMETVYNVTVPAMT 410

Query: 99  ASVITLIVTKGSYEIPFSYKQADVLIGGKEVEYHLEDGIYRGTNFYDLKYDVR 152
              +++I T+GS ++PFSY Q D L  GK V Y+++DG+Y G N +++KY  +
Sbjct: 411 KVTVSMIATQGSCDVPFSYTQHDTLTDGKNVVYNMDDGVYVGVNCFNVKYHTK 461

[Close]

BLAST of Cp4.1LG17g10960 vs. NCBI nr
Match: gi|225465417|ref|XP_002264098.1| (PREDICTED: uncharacterized protein LOC100256767 [Vitis vinifera])

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 47/113 (41.59%), Postives = 74/113 (65.49%), Query Frame = 1


Query: 39  SISTKLDVKTRIKSGVPLVSDGRKFDISSAKFDGEYKWGEIITVSKPKEVIYETIIPPNS 98
           S+S KL VK  ++SGVP ++DG K +ISS +F G Y+WG   +V+   E +Y   +P  +
Sbjct: 351 SVSLKLGVKITMESGVPFIADG-KLEISS-EFSGTYEWGGTESVTTAMETLYNVTVPAMT 410

Query: 99  ASVITLIVTKGSYEIPFSYKQADVLIGGKEVEYHLEDGIYRGTNFYDLKYDVR 152
              +++I T+GS ++PFSY Q D L  GK V Y+++DG+Y G N +++KY  +
Sbjct: 411 RVTVSMIATQGSCDVPFSYSQRDTLTDGKNVIYNMDDGVYNGVNCFNVKYQTK 461

[Close]

BLAST of Cp4.1LG17g10960 vs. NCBI nr
Match: gi|645281008|ref|XP_008245436.1| (PREDICTED: uncharacterized protein LOC103343557 [Prunus mume])

HSP 1 Score: 99.4 bits (246), Expect = 6.2e-18
Identity = 46/112 (41.07%), Postives = 74/112 (66.07%), Query Frame = 1


Query: 38  SSISTKLDVKTRIKSGVPLVSDGRKFDISSAKFDGEYKWGEIITVSKPKEVIYETIIPPN 97
           SS+S KL + T++++GVPL++ G + +IS+ +F  E++WGE  T     E +Y  ++PP 
Sbjct: 355 SSVSMKLGLSTKVQTGVPLIAKG-EIEIST-EFATEFQWGETNTSESEVETVYRVVVPPM 414

Query: 98  SASVITLIVTKGSYEIPFSYKQADVLIGGKEVEYHLEDGIYRGTNFYDLKYD 150
           S   ++L+ T+GS ++PFSY Q D LI G  V   ++DG+Y G N Y+ KY+
Sbjct: 415 SMVKVSLMATRGSCDVPFSYTQRDTLINGTTVTQTMDDGVYTGVNSYNFKYE 464

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g10960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g10960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K956_CUCSA	4.5e-23	50.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G080920 PE=4 SV=1	[more]
F6HZZ7_VITVI	5.1e-19	42.48	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06110 PE=4 SV=...	[more]
D7U3H5_VITVI	1.1e-18	41.59	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06000 PE=4 SV=...	[more]
F6HZZ6_VITVI	4.3e-18	41.03	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06090 PE=4 SV=...	[more]
A0A0D9XU75_9ORYZ	4.3e-18	41.96	Uncharacterized protein OS=Leersia perrieri PE=4 SV=1	[more]

BLAST of Cp4.1LG17g10960 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g10960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454680\|ref\|XP_004145082.1\|	6.4e-23	50.82	PREDICTED: uncharacterized protein LOC101206536 [Cucumis sativus]	[more]
gi\|659120444\|ref\|XP_008460197.1\|	1.9e-22	49.59	PREDICTED: uncharacterized protein LOC103499082 [Cucumis melo]	[more]
gi\|225465427\|ref\|XP_002264911.1\|	7.3e-19	42.48	PREDICTED: uncharacterized protein LOC100263724 [Vitis vinifera]	[more]
gi\|225465417\|ref\|XP_002264098.1\|	1.6e-18	41.59	PREDICTED: uncharacterized protein LOC100256767 [Vitis vinifera]	[more]
gi\|645281008\|ref\|XP_008245436.1\|	6.2e-18	41.07	PREDICTED: uncharacterized protein LOC103343557 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023307	Aerolysin-like toxin, beta complex domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009405	pathogenesis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g10960.1	Cp4.1LG17g10960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023307	Aerolysin-like toxin, beta complex domain	GENE3D	G3DSA:2.170.15.10		coord: 43..153 score: 2.0
None	No IPR available	GENE3D	G3DSA:2.80.10.50		coord: 3..42 score: 7.
None	No IPR available	PANTHER	PTHR39244	FAMILY NOT NAMED	coord: 38..156 score: 8.5
None	No IPR available	PANTHER	PTHR39244:SF1	SUBFAMILY NOT NAMED	coord: 38..156 score: 8.5
None	No IPR available	unknown	SSF56973	Aerolisin/ETX pore-forming domain	coord: 39..151 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG17g10960	Cucsa.348520	Cucumber (Gy14) v1	cgycpeB0912
Cp4.1LG17g10960	CmaCh08G001960	Cucurbita maxima (Rimu)	cmacpeB914
Cp4.1LG17g10960	CmoCh17G005840	Cucurbita moschata (Rifu)	cmocpeB356
Cp4.1LG17g10960	CmoCh08G001990	Cucurbita moschata (Rifu)	cmocpeB851
Cp4.1LG17g10960	Cla007009	Watermelon (97103) v1	cpewmB344
Cp4.1LG17g10960	Csa6G080920	Cucumber (Chinese Long) v2	cpecuB327
Cp4.1LG17g10960	MELO3C022451	Melon (DHL92) v3.5.1	cpemeB288
Cp4.1LG17g10960	ClCG06G000900	Watermelon (Charleston Gray)	cpewcgB302
Cp4.1LG17g10960	CSPI06G06370	Wild cucumber (PI 183967)	cpecpiB328
Cp4.1LG17g10960	Lsi09G018510	Bottle gourd (USVL1VR-Ls)	cpelsiB253
Cp4.1LG17g10960	MELO3C022450.2	Melon (DHL92) v3.6.1	cpemedB336
Cp4.1LG17g10960	CsaV3_6G006750	Cucumber (Chinese Long) v3	cpecucB0408
Cp4.1LG17g10960	Bhi12G002220	Wax gourd	cpewgoB0380
Cp4.1LG17g10960	CsGy6G006390	Cucumber (Gy14) v2	cgybcpeB788

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG17g10960	Cucurbita pepo (Zucchini)	cpecpeB175
Cp4.1LG17g10960	Cucumber (Gy14) v1	cgycpeB0959
Cp4.1LG17g10960	Cucurbita maxima (Rimu)	cmacpeB394
Cp4.1LG17g10960	Silver-seed gourd	carcpeB0125