Lsi09G018510 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G018510
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionHfr-2-like protein
Locationchr09 : 27329331 .. 27329861 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGCCTTTGGTTTCGAGGAGTATTTATAATGTTGATTATCGAGTATCGGATGCACGAATTTACGACGAGAAAGTTATGATGATGGCAACTCAAAAGGCCACTAATAGAACCACACAAAATGAGACATTGACTTCGAAGTTTACTTGCACAGAGACTAAAACAAGTGTTTTGGAATCTTCTACTACCTGGAAAGTGGGTGCACAAACAGCTCTTAAAGCTAGTTTTCCTTTTATTGCTGATGGAAAAGTAACAATCTCAGGAGTGTTTTCAAGAACATATAAATGGGGAGAAATTTGCACATCTACCAAAACATTGGAAACTGTACAAGTTGTCACTGTGCCGCCAATGTCATTGGTGGAGGTTAGCTTGCTGTCTACACAAGGTTATTGTGACGTTCCCTTCTCTTATACTCAACGTGATGTCCTTTTAAGTGGTAAACAAGTTTTCCATGAATTTGATGATGGCGTTTACATTGGCAGCAACTGCTACAACTTTAAGTACGAGTCTAAAGAAACTCGACTTTGA

mRNA sequence

ATGGAAGAGCCTTTGGTTTCGAGGAGTATTTATAATGTTGATTATCGAGTATCGGATGCACGAATTTACGACGAGAAAGTTATGATGATGGCAACTCAAAAGGCCACTAATAGAACCACACAAAATGAGACATTGACTTCGAAGTTTACTTGCACAGAGACTAAAACAAGTGTTTTGGAATCTTCTACTACCTGGAAAGTGGGTGCACAAACAGCTCTTAAAGCTAGTTTTCCTTTTATTGCTGATGGAAAAGTAACAATCTCAGGAGTGTTTTCAAGAACATATAAATGGGGAGAAATTTGCACATCTACCAAAACATTGGAAACTGTACAAGTTGTCACTGTGCCGCCAATGTCATTGGTGGAGGTTAGCTTGCTGTCTACACAAGGTTATTGTGACGTTCCCTTCTCTTATACTCAACGTGATGTCCTTTTAAGTGGTAAACAAGTTTTCCATGAATTTGATGATGGCGTTTACATTGGCAGCAACTGCTACAACTTTAAGTACGAGTCTAAAGAAACTCGACTTTGA

Coding sequence (CDS)

ATGGAAGAGCCTTTGGTTTCGAGGAGTATTTATAATGTTGATTATCGAGTATCGGATGCACGAATTTACGACGAGAAAGTTATGATGATGGCAACTCAAAAGGCCACTAATAGAACCACACAAAATGAGACATTGACTTCGAAGTTTACTTGCACAGAGACTAAAACAAGTGTTTTGGAATCTTCTACTACCTGGAAAGTGGGTGCACAAACAGCTCTTAAAGCTAGTTTTCCTTTTATTGCTGATGGAAAAGTAACAATCTCAGGAGTGTTTTCAAGAACATATAAATGGGGAGAAATTTGCACATCTACCAAAACATTGGAAACTGTACAAGTTGTCACTGTGCCGCCAATGTCATTGGTGGAGGTTAGCTTGCTGTCTACACAAGGTTATTGTGACGTTCCCTTCTCTTATACTCAACGTGATGTCCTTTTAAGTGGTAAACAAGTTTTCCATGAATTTGATGATGGCGTTTACATTGGCAGCAACTGCTACAACTTTAAGTACGAGTCTAAAGAAACTCGACTTTGA

Protein sequence

MEEPLVSRSIYNVDYRVSDARIYDEKVMMMATQKATNRTTQNETLTSKFTCTETKTSVLESSTTWKVGAQTALKASFPFIADGKVTISGVFSRTYKWGEICTSTKTLETVQVVTVPPMSLVEVSLLSTQGYCDVPFSYTQRDVLLSGKQVFHEFDDGVYIGSNCYNFKYESKETRL
Homology
[Close]
BLAST of Lsi09G018510 vs. TrEMBL
Match: F6HZZ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06110 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.4e-40
Identity = 87/174 (50.00%), Postives = 121/174 (69.54%), Query Frame = 1 

Query: 3   EPLVSRSIYNVDYRVSDARIYDEKVMMMATQKATNRTTQNETLTSKFTCTETKTSVLESS 62
           E ++SR+IYNV++R+ DAR YD++V++M T +A N T +  T   K + TETK+   + S
Sbjct: 292 ELVLSRNIYNVNFRLMDARTYDQRVIVMTTGEAINMTQELHTQQVKLSYTETKSRTWKGS 351

Query: 63  TTWKVGAQTALKASFPFIADGKVTISGVFSRTYKWGEICTSTKTLETVQVVTVPPMSLVE 122
            + K+G +  +++  PFIADGK+ IS  FS TY+WGE  + T  +ETV  VTVP M+ V 
Sbjct: 352 VSLKLGVKMTMESGVPFIADGKLEISSEFSGTYEWGETESVTTAMETVYNVTVPAMTKVT 411

Query: 123 VSLLSTQGYCDVPFSYTQRDVLLSGKQVFHEFDDGVYIGSNCYNFKYESKETRL 177
           VS+++TQG CDVPFSYTQ D L  GK V +  DDGVY+G NC+N KY +KE +L
Sbjct: 412 VSMIATQGSCDVPFSYTQHDTLTDGKNVVYNMDDGVYVGVNCFNVKYHTKEEKL 465

[Close]
BLAST of Lsi09G018510 vs. TrEMBL
Match: F6HZZ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06090 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.7e-40
Identity = 88/174 (50.57%), Postives = 121/174 (69.54%), Query Frame = 1 

Query: 3   EPLVSRSIYNVDYRVSDARIYDEKVMMMATQKATNRTTQNETLTSKFTCTETKTSVLESS 62
           E ++SR+IYNV++R+ DARIYD+ V++M T +A NRT +  T   K + TETK+S  + S
Sbjct: 292 ELVLSRNIYNVNFRLMDARIYDQSVIVMTTAEAINRTHEPHTQQVKLSYTETKSSTWKGS 351

Query: 63  TTWKVGAQTALKASFPFIADGKVTISGVFSRTYKWGEICTSTKTLETVQVVTVPPMSLVE 122
            + K+G +  +++  PFIA+GK+ IS  FS  Y+WGE  + T  +ET+  VTVP M+ V 
Sbjct: 352 VSLKLGVKITMESGVPFIANGKLEISSEFSGAYEWGETESVTTAMETMYNVTVPAMTRVT 411

Query: 123 VSLLSTQGYCDVPFSYTQRDVLLSGKQVFHEFDDGVYIGSNCYNFKYESKETRL 177
           VS++ T+G CDVPFSYTQRD L  GK V    DDGVY+G NC+N KYE+KE  L
Sbjct: 412 VSMIGTKGSCDVPFSYTQRDTLTDGKIVVDNMDDGVYVGVNCFNVKYETKEENL 465

[Close]
BLAST of Lsi09G018510 vs. TrEMBL
Match: D7U3H5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06000 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.8e-39
Identity = 86/174 (49.43%), Postives = 122/174 (70.11%), Query Frame = 1 

Query: 3   EPLVSRSIYNVDYRVSDARIYDEKVMMMATQKATNRTTQNETLTSKFTCTETKTSVLESS 62
           E ++SR+IYNV++R+ DARIYD++V++M T +A N T +  T   K + TETK+   + S
Sbjct: 292 ELVLSRNIYNVNFRLMDARIYDQRVIIMTTGEAINMTHEPHTQQVKLSYTETKSRTWKGS 351

Query: 63  TTWKVGAQTALKASFPFIADGKVTISGVFSRTYKWGEICTSTKTLETVQVVTVPPMSLVE 122
            + K+G +  +++  PFIADGK+ IS  FS TY+WG   + T  +ET+  VTVP M+ V 
Sbjct: 352 VSLKLGVKITMESGVPFIADGKLEISSEFSGTYEWGGTESVTTAMETLYNVTVPAMTRVT 411

Query: 123 VSLLSTQGYCDVPFSYTQRDVLLSGKQVFHEFDDGVYIGSNCYNFKYESKETRL 177
           VS+++TQG CDVPFSY+QRD L  GK V +  DDGVY G NC+N KY++KE +L
Sbjct: 412 VSMIATQGSCDVPFSYSQRDTLTDGKNVIYNMDDGVYNGVNCFNVKYQTKEEKL 465

[Close]
BLAST of Lsi09G018510 vs. TrEMBL
Match: D7U3H9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06060 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.5e-37
Identity = 84/176 (47.73%), Postives = 119/176 (67.61%), Query Frame = 1 

Query: 3   EPLVSRSIYNVDYRVSDARIYDEKVMMMATQKATNRTTQNETLTSKFTCTETKTSVLESS 62
           E ++SR+IYNV++R+ DARIYD++V++M T  A N T +  T   K + TET +   + S
Sbjct: 292 ELVLSRNIYNVNFRLMDARIYDQRVIVMTTGGAINMTQEPHTQQVKLSYTETNSRTWKGS 351

Query: 63  TTWKVGAQTALKASFPFIADGKVTISGVFSRT--YKWGEICTSTKTLETVQVVTVPPMSL 122
            + K G +  +++  PFIADGK+ +S  FS T  Y+WGE  + T   ETV  VTVP  + 
Sbjct: 352 VSLKSGVKITIESGVPFIADGKLEVSSEFSGTGTYEWGETESLTTAKETVYSVTVPARTR 411

Query: 123 VEVSLLSTQGYCDVPFSYTQRDVLLSGKQVFHEFDDGVYIGSNCYNFKYESKETRL 177
           V +S+++TQG CDVPFSYTQRD L  GK V +  DDGVY+G NC+N +Y++KE +L
Sbjct: 412 VTISMIATQGSCDVPFSYTQRDTLTDGKNVVYNMDDGVYVGVNCFNVEYQTKEEKL 467

[Close]
BLAST of Lsi09G018510 vs. TrEMBL
Match: A5AYS3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020655 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 6.6e-36
Identity = 83/176 (47.16%), Postives = 119/176 (67.61%), Query Frame = 1 

Query: 3   EPLVSRSIYNVDYRVSDARIYDEKVMMMATQKATNRTTQNETLTSKFTCTETKTSVLESS 62
           E ++SR+IYNV++R+ DARIYD++V++M T  A N T +  T   K + TETK+   + S
Sbjct: 293 ELVLSRNIYNVNFRLMDARIYDQRVIVMTTGGAINMTHEPHTQQVKLSYTETKSRTWKGS 352

Query: 63  TTWKVGAQTALKASFPFIADGKVTISGVFSRT--YKWGEICTSTKTLETVQVVTVPPMSL 122
            + K G +  +++  PFIADGK+ +S  FS T  Y+WGE  + T   ETV  VTVP  + 
Sbjct: 353 VSLKSGVKITIESGVPFIADGKLEVSSEFSGTGTYEWGETESLTTAXETVYSVTVPARTR 412

Query: 123 VEVSLLSTQGYCDVPFSYTQRDVLLSGKQVFHEFDDGVYIGSNCYNFKYESKETRL 177
           V +S+++TQG  DVPFSYTQRD L  G+ V +  DDGVY+G NC+N +Y++KE +L
Sbjct: 413 VTISMIATQGSYDVPFSYTQRDTLTDGQNVVYNMDDGVYVGVNCFNVEYQTKEEKL 468

[Close]
BLAST of Lsi09G018510 vs. NCBI nr
Match: gi|225465427|ref|XP_002264911.1| (PREDICTED: uncharacterized protein LOC100263724 [Vitis vinifera])

HSP 1 Score: 172.6 bits (436), Expect = 6.3e-40
Identity = 87/174 (50.00%), Postives = 121/174 (69.54%), Query Frame = 1 

Query: 3   EPLVSRSIYNVDYRVSDARIYDEKVMMMATQKATNRTTQNETLTSKFTCTETKTSVLESS 62
           E ++SR+IYNV++R+ DAR YD++V++M T +A N T +  T   K + TETK+   + S
Sbjct: 292 ELVLSRNIYNVNFRLMDARTYDQRVIVMTTGEAINMTQELHTQQVKLSYTETKSRTWKGS 351

Query: 63  TTWKVGAQTALKASFPFIADGKVTISGVFSRTYKWGEICTSTKTLETVQVVTVPPMSLVE 122
            + K+G +  +++  PFIADGK+ IS  FS TY+WGE  + T  +ETV  VTVP M+ V 
Sbjct: 352 VSLKLGVKMTMESGVPFIADGKLEISSEFSGTYEWGETESVTTAMETVYNVTVPAMTKVT 411

Query: 123 VSLLSTQGYCDVPFSYTQRDVLLSGKQVFHEFDDGVYIGSNCYNFKYESKETRL 177
           VS+++TQG CDVPFSYTQ D L  GK V +  DDGVY+G NC+N KY +KE +L
Sbjct: 412 VSMIATQGSCDVPFSYTQHDTLTDGKNVVYNMDDGVYVGVNCFNVKYHTKEEKL 465

[Close]
BLAST of Lsi09G018510 vs. NCBI nr
Match: gi|297744329|emb|CBI37299.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 172.2 bits (435), Expect = 8.2e-40
Identity = 88/174 (50.57%), Postives = 121/174 (69.54%), Query Frame = 1 

Query: 3   EPLVSRSIYNVDYRVSDARIYDEKVMMMATQKATNRTTQNETLTSKFTCTETKTSVLESS 62
           E ++SR+IYNV++R+ DARIYD+ V++M T +A NRT +  T   K + TETK+S  + S
Sbjct: 421 ELVLSRNIYNVNFRLMDARIYDQSVIVMTTAEAINRTHEPHTQQVKLSYTETKSSTWKGS 480

Query: 63  TTWKVGAQTALKASFPFIADGKVTISGVFSRTYKWGEICTSTKTLETVQVVTVPPMSLVE 122
            + K+G +  +++  PFIA+GK+ IS  FS  Y+WGE  + T  +ET+  VTVP M+ V 
Sbjct: 481 VSLKLGVKITMESGVPFIANGKLEISSEFSGAYEWGETESVTTAMETMYNVTVPAMTRVT 540

Query: 123 VSLLSTQGYCDVPFSYTQRDVLLSGKQVFHEFDDGVYIGSNCYNFKYESKETRL 177
           VS++ T+G CDVPFSYTQRD L  GK V    DDGVY+G NC+N KYE+KE  L
Sbjct: 541 VSMIGTKGSCDVPFSYTQRDTLTDGKIVVDNMDDGVYVGVNCFNVKYETKEENL 594

[Close]
BLAST of Lsi09G018510 vs. NCBI nr
Match: gi|225465425|ref|XP_002264858.1| (PREDICTED: uncharacterized protein LOC100241465 [Vitis vinifera])

HSP 1 Score: 172.2 bits (435), Expect = 8.2e-40
Identity = 88/174 (50.57%), Postives = 121/174 (69.54%), Query Frame = 1 

Query: 3   EPLVSRSIYNVDYRVSDARIYDEKVMMMATQKATNRTTQNETLTSKFTCTETKTSVLESS 62
           E ++SR+IYNV++R+ DARIYD+ V++M T +A NRT +  T   K + TETK+S  + S
Sbjct: 292 ELVLSRNIYNVNFRLMDARIYDQSVIVMTTAEAINRTHEPHTQQVKLSYTETKSSTWKGS 351

Query: 63  TTWKVGAQTALKASFPFIADGKVTISGVFSRTYKWGEICTSTKTLETVQVVTVPPMSLVE 122
            + K+G +  +++  PFIA+GK+ IS  FS  Y+WGE  + T  +ET+  VTVP M+ V 
Sbjct: 352 VSLKLGVKITMESGVPFIANGKLEISSEFSGAYEWGETESVTTAMETMYNVTVPAMTRVT 411

Query: 123 VSLLSTQGYCDVPFSYTQRDVLLSGKQVFHEFDDGVYIGSNCYNFKYESKETRL 177
           VS++ T+G CDVPFSYTQRD L  GK V    DDGVY+G NC+N KYE+KE  L
Sbjct: 412 VSMIGTKGSCDVPFSYTQRDTLTDGKIVVDNMDDGVYVGVNCFNVKYETKEENL 465

[Close]
BLAST of Lsi09G018510 vs. NCBI nr
Match: gi|694401999|ref|XP_009376017.1| (PREDICTED: uncharacterized protein LOC103964769 [Pyrus x bretschneideri])

HSP 1 Score: 169.9 bits (429), Expect = 4.1e-39
Identity = 87/171 (50.88%), Postives = 121/171 (70.76%), Query Frame = 1 

Query: 1   MEEPLVSRSIYNVDYRVSDARIYDEKVMMMATQKATNRTTQNETLTSKFTCTETKTSVLE 60
           +EE +VSRSIYNV+YRV DAR+Y++ V+ MAT +A NRT +  T+  K +   T++SV  
Sbjct: 298 LEEVVVSRSIYNVNYRVLDARVYNQTVVTMATGEALNRTKEQNTIEMKLSYKNTRSSVWN 357

Query: 61  SSTTWKVGAQTALKASFPFIADGKVTISGVFSRTYKWGEICTSTKTLETVQVVTVPPMSL 120
           +S + K+G +T L+A  P I +GK+ +S      ++WGE  TS   +ETV  VTVPPM+ 
Sbjct: 358 TSVSLKLGIKTTLEAGVPLIENGKIEVSAEVGAGFQWGETETSESVVETVYKVTVPPMTR 417

Query: 121 VEVSLLSTQGYCDVPFSYTQRDVLLSGKQVFHEFDDGVYIGSNCYNFKYES 172
           V+ S+L+T+G CDVPFSYTQRDVL +GKQ  +  DDGVY G N YNF+Y++
Sbjct: 418 VKESMLATRGACDVPFSYTQRDVLTNGKQNIYNMDDGVYTGVNNYNFQYDA 468

[Close]
BLAST of Lsi09G018510 vs. NCBI nr
Match: gi|225465417|ref|XP_002264098.1| (PREDICTED: uncharacterized protein LOC100256767 [Vitis vinifera])

HSP 1 Score: 169.9 bits (429), Expect = 4.1e-39
Identity = 86/174 (49.43%), Postives = 122/174 (70.11%), Query Frame = 1 

Query: 3   EPLVSRSIYNVDYRVSDARIYDEKVMMMATQKATNRTTQNETLTSKFTCTETKTSVLESS 62
           E ++SR+IYNV++R+ DARIYD++V++M T +A N T +  T   K + TETK+   + S
Sbjct: 292 ELVLSRNIYNVNFRLMDARIYDQRVIIMTTGEAINMTHEPHTQQVKLSYTETKSRTWKGS 351

Query: 63  TTWKVGAQTALKASFPFIADGKVTISGVFSRTYKWGEICTSTKTLETVQVVTVPPMSLVE 122
            + K+G +  +++  PFIADGK+ IS  FS TY+WG   + T  +ET+  VTVP M+ V 
Sbjct: 352 VSLKLGVKITMESGVPFIADGKLEISSEFSGTYEWGGTESVTTAMETLYNVTVPAMTRVT 411

Query: 123 VSLLSTQGYCDVPFSYTQRDVLLSGKQVFHEFDDGVYIGSNCYNFKYESKETRL 177
           VS+++TQG CDVPFSY+QRD L  GK V +  DDGVY G NC+N KY++KE +L
Sbjct: 412 VSMIATQGSCDVPFSYSQRDTLTDGKNVIYNMDDGVYNGVNCFNVKYQTKEEKL 465

The following BLAST results are available for this feature:
BLAST of Lsi09G018510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G018510 vs. TrEMBL
Match NameE-valueIdentityDescription
F6HZZ7_VITVI4.4e-4050.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06110 PE=4 SV=... [more]
F6HZZ6_VITVI5.7e-4050.57Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06090 PE=4 SV=... [more]
D7U3H5_VITVI2.8e-3949.43Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06000 PE=4 SV=... [more]
D7U3H9_VITVI4.5e-3747.73Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06060 PE=4 SV=... [more]
A5AYS3_VITVI6.6e-3647.16Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020655 PE=4 SV=1[more]
BLAST of Lsi09G018510 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G018510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|225465427|ref|XP_002264911.1|6.3e-4050.00PREDICTED: uncharacterized protein LOC100263724 [Vitis vinifera][more]
gi|297744329|emb|CBI37299.3|8.2e-4050.57unnamed protein product [Vitis vinifera][more]
gi|225465425|ref|XP_002264858.1|8.2e-4050.57PREDICTED: uncharacterized protein LOC100241465 [Vitis vinifera][more]
gi|694401999|ref|XP_009376017.1|4.1e-3950.88PREDICTED: uncharacterized protein LOC103964769 [Pyrus x bretschneideri][more]
gi|225465417|ref|XP_002264098.1|4.1e-3949.43PREDICTED: uncharacterized protein LOC100256767 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023307Aerolysin-like toxin, beta complex domain
IPR004991Aerolysin-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G018510.1Lsi09G018510.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004991Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2PFAMPF03318ETX_MTX2coord: 19..125
score: 1.
IPR023307Aerolysin-like toxin, beta complex domainGENE3DG3DSA:2.170.15.10coord: 7..173
score: 2.7
NoneNo IPR availablePANTHERPTHR39244FAMILY NOT NAMEDcoord: 1..176
score: 1.5
NoneNo IPR availablePANTHERPTHR39244:SF1SUBFAMILY NOT NAMEDcoord: 1..176
score: 1.5
NoneNo IPR availableunknownSSF56973Aerolisin/ETX pore-forming domaincoord: 10..172
score: 2.75