CmaCh08G001960 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G001960
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Pore-forming toxin-like protein Hfr-2
Location	Cma_Chr08 : 1100531 .. 1101170 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTACCTTCACAAATGATGGAAAATTTCGCATAAAGTCCATTTTCTTCCAAAGACTTTGGAAACGTGGTGATCGTGATTGGATTTTTGCTGACTTGGATGACTCTAATTCTCAAGATCCCGATGTTTTGTTTTCACCGATTAAACTTTCTCCCCTCGTTGTTGCTCTACGTAACTTGGGTGCTAACAAATTCATTAAAAGATACACTAATTTCGGGTATAGAAAGCAGTCTCAATGCTGCTATCTCAGAGATTGATGAATTTTCACACGTTCTAGAGAAATCAGTCATGTGGCGTTTTATCTTTCTGAGGCTTTAACGAAGTTGTTATCATGTTAGCAACCAGTGAAGTTAGAAACAATTTCAACGTACCCAATATTGCACGTATCACTTTCTCATATATATAGACAAGAGAATTAGCTCATGGGCTTCTTCAATCTCAACGAAATTGGATGTCAAGACTACAATTAAGTCGAGAGTTCCCCTCATTAGTGATGGAAGGAAGTTCGATATATCTTCAGCTAAATTTGATGGAGAATACAAATGGGGAGAAATTAAAACAGTTTCAAAGCCAAAAGAGATAACATACGAGATAATCGTACCACCAAACAGGCTACTTTCATTACCTTACTTGTAA

mRNA sequence

ATGGAGACTACCTTCACAAATGATGGAAAATTTCGCATAAAGTCCATTTTCTTCCAAAGACTTTGGAAACGTGGTGATCGTGATTGGATTTTTGCTGACTTGGATGACTCTAATTCTCAAGATCCCGATGTTTTGTTTTCACCGATTAAACTTTCTCCCCTCGTTGTTGCTCTACACAAGAGAATTAGCTCATGGGCTTCTTCAATCTCAACGAAATTGGATGTCAAGACTACAATTAAGTCGAGAGTTCCCCTCATTAGTGATGGAAGGAAGTTCGATATATCTTCAGCTAAATTTGATGGAGAATACAAATGGGGAGAAATTAAAACAGTTTCAAAGCCAAAAGAGATAACATACGAGATAATCGTACCACCAAACAGGCTACTTTCATTACCTTACTTGTAA

Coding sequence (CDS)

ATGGAGACTACCTTCACAAATGATGGAAAATTTCGCATAAAGTCCATTTTCTTCCAAAGACTTTGGAAACGTGGTGATCGTGATTGGATTTTTGCTGACTTGGATGACTCTAATTCTCAAGATCCCGATGTTTTGTTTTCACCGATTAAACTTTCTCCCCTCGTTGTTGCTCTACACAAGAGAATTAGCTCATGGGCTTCTTCAATCTCAACGAAATTGGATGTCAAGACTACAATTAAGTCGAGAGTTCCCCTCATTAGTGATGGAAGGAAGTTCGATATATCTTCAGCTAAATTTGATGGAGAATACAAATGGGGAGAAATTAAAACAGTTTCAAAGCCAAAAGAGATAACATACGAGATAATCGTACCACCAAACAGGCTACTTTCATTACCTTACTTGTAA

Protein sequence

METTFTNDGKFRIKSIFFQRLWKRGDRDWIFADLDDSNSQDPDVLFSPIKLSPLVVALHKRISSWASSISTKLDVKTTIKSRVPLISDGRKFDISSAKFDGEYKWGEIKTVSKPKEITYEIIVPPNRLLSLPYL

Homology

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BLAST of CmaCh08G001960 vs. TrEMBL
Match: A0A0D9XHI4_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-06
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 61  RISSWASSISTKLDVKTTIKSRVPLISDGRKFDISSAKFDGEYKWGEIKTVSKPKEITYE 120
           R SSW +++S KL VK T++  VPLIS G+    +  +F G Y+WG   T S+   + Y+
Sbjct: 414 RQSSWNATVSLKLGVKITVEIGVPLISSGKVE--TQLEFSGSYQWGSTVTSSEEHSVDYD 473

Query: 121 IIVPPNRLLSLPYL 135
           I VPPN+ + L  L
Sbjct: 474 ITVPPNKAVKLSVL 485

The following BLAST results are available for this feature:

BLAST of CmaCh08G001960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh08G001960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D9XHI4_9ORYZ	1.9e-06	41.89	Uncharacterized protein OS=Leersia perrieri PE=4 SV=1	[more]

BLAST of CmaCh08G001960 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh08G001960 vs. NCBI nr


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008998	Agglutinin
IPR023307	Aerolysin-like toxin, beta complex domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G001960.1	CmaCh08G001960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008998	Agglutinin domain	unknown	SSF50382	Agglutinin	coord: 5..59 score: 8.76
IPR023307	Aerolysin-like toxin, beta complex domain	GENE3D	G3DSA:2.170.15.10		coord: 63..127 score: 1.
None	No IPR available	GENE3D	G3DSA:2.80.10.50		coord: 3..60 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G001960	Cp4.1LG17g10960	Cucurbita pepo (Zucchini)	cmacpeB914
CmaCh08G001960	Bhi12G002222	Wax gourd	cmawgoB1092

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G001960	Cucumber (Chinese Long) v3	cmacucB1077
CmaCh08G001960	Watermelon (97103) v2	cmawmbB925
CmaCh08G001960	Cucurbita maxima (Rimu)	cmacmaB389
CmaCh08G001960	Cucumber (Gy14) v1	cgycmaB0956
CmaCh08G001960	Cucumber (Gy14) v1	cgycmaB1012
CmaCh08G001960	Cucurbita moschata (Rifu)	cmacmoB903
CmaCh08G001960	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G001960	Wild cucumber (PI 183967)	cmacpiB928
CmaCh08G001960	Cucumber (Chinese Long) v2	cmacuB908
CmaCh08G001960	Melon (DHL92) v3.5.1	cmameB820
CmaCh08G001960	Watermelon (Charleston Gray)	cmawcgB808
CmaCh08G001960	Watermelon (97103) v1	cmawmB883
CmaCh08G001960	Cucurbita pepo (Zucchini)	cmacpeB910
CmaCh08G001960	Bottle gourd (USVL1VR-Ls)	cmalsiB815
CmaCh08G001960	Cucumber (Gy14) v2	cgybcmaB876
CmaCh08G001960	Melon (DHL92) v3.6.1	cmamedB918
CmaCh08G001960	Silver-seed gourd	carcmaB0112