Cp4.1LG17g06980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g06980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNucleolar protein 16
LocationCp4.1LG17 : 6202069 .. 6203773 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAACCCTACGAAATCCCCAATCATCTTCTACATCTAAACCCTAGCCACCGGCTTCACCGAGCAGCAGAGGGAGATGGGAAGGTCTCGGAGGAAGTACAAGAGATCTCGGCCAAAGGTCCAGGTCGGCCTGCCGAAAAGGCACCCTAACGTTTTCAAGCCGTCCTTCTGCATGCCGCCGAAGCTTCGCTCCTTGCTCGGCGAACAATTTGAAGAAGATCCGGCATGGGATGAGAAAGCCAGTGTTATTAATAACTATAAGTCGTTTGGTGTTCTTTCTAACCCTAATTTGCTCAGCGTTCGTTCTCGAACTGATCACATTGTTGAGAGCGACTCCCTCCAGGTTCCTCCGTCTCAGTTGCCTTCCGATGATCTTGATTCTGTGCTTGATTCATCCGGTAGCGATGTGGAAGAGGACGGTGAGTTTTGAGCTTTTTTTTTTTTTTTTTTCCTCTTTCGCTGTTGTTTTAAATTTATGTTGGTGTGAGTGGATGATTCTCAGGTCAATACTGTGATATTTCCAAATTTGAAAAATATTTGTTTACATGAAATTAGTTGATTTTATGAAATATGATACCTTCCGCTCCAGGTTTAGTAAACTATCACTTGCAATAGTTTCTGCAACTTTGATAGTTTTTTGGTGTTCATGACCTGGAAATTTCGGAATAAGTAGCAGCTCTTCATTGAACCAGATTAGCCGTCCAAATTGATTGGATTTAGTTTACCATATATCATGTTTATGCAACCTTTTTCTGAATAGTTATTTATGAAATGATTAGAGAGGAACTGAAATGGAACGAAGATTGATTTTGATTGTAATGTCTTATTATCATGAAGGATCAAAGAGGATGCCAAAACAAAATTTTGAGTTGCGTTTCTGAATCTAGTTGAGCTTGTGCTGATATTGTGATCTTTCCTTTGCGTTCTTTAGATTTGAAAACAGCACTAGGAAAGAAGCGCAGAGATGGGAAATCAGGACCTCTAAAGCCTTTGACCACAATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAATACGGAGATGATTATGAGGTAAGCTTCAGTTTTACTTTCTCTTAAAACTGCTTAATTTGCCTTTTGTCTCATTGAAAATTCTCATGCAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCACTCAGTTGGCACTCTGGAGAAACTATGCAAACGATATCACAGTTCGGGTAAGAATCCATTGATATTGACTCGTTAAAGATATTATCGATGGAACAACCCCATCGTCTTTCAAATTGTTTTGTTACAATAGATGAATCAGATATGGTATTATGATCATGAAATCTAATTGAGCAACATTGTTCGAACATAAGTATGTGAGGCTTGAAAAGATGGCTCATTCATTCTCTTGCTTGCAGCAGTCTTCTTCCTTTCTAGGAAATGCTCATAAGGACCCATGTTTAGTTAGTGGCATGTATAGAGCATTTTGATTTTGGGGAAACTGACTGTTTTGCAAGAATTTTAGGTTGTATGTAATATCTTATAAAATTCCCAAATGCATTTTTGATATGTTTGAATCCATGAAATTGACATCATAATCTATTTACACAATCGAATGACCACTTCTCAAGAATCGTGTTAGTCTTCATTTGTTTCGTTTTGAAATTTGGAATGTGATCTATTACGCATGACTTCGACTTCAAATTTTTGGTCCGTAACAATTTAGT

mRNA sequence

TAAACCCTACGAAATCCCCAATCATCTTCTACATCTAAACCCTAGCCACCGGCTTCACCGAGCAGCAGAGGGAGATGGGAAGGTCTCGGAGGAAGTACAAGAGATCTCGGCCAAAGGTCCAGGTCGGCCTGCCGAAAAGGCACCCTAACGTTTTCAAGCCGTCCTTCTGCATGCCGCCGAAGCTTCGCTCCTTGCTCGGCGAACAATTTGAAGAAGATCCGGCATGGGATGAGAAAGCCAGTGTTATTAATAACTATAAGTCGTTTGGTGTTCTTTCTAACCCTAATTTGCTCAGCGTTCGTTCTCGAACTGATCACATTGTTGAGAGCGACTCCCTCCAGGTTCCTCCGTCTCAGTTGCCTTCCGATGATCTTGATTCTGTGCTTGATTCATCCGGTAGCGATGTGGAAGAGGACGATTTGAAAACAGCACTAGGAAAGAAGCGCAGAGATGGGAAATCAGGACCTCTAAAGCCTTTGACCACAATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAATACGGAGATGATTATGAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCACTCAGTTGGCACTCTGGAGAAACTATGCAAACGATATCACAGTTCGGGTAAGAATCCATTGATATTGACTCGTTAAAGATATTATCGATGGAACAACCCCATCGTCTTTCAAATTGTTTTGTTACAATAGATGAATCAGATATGGTATTATGATCATGAAATCTAATTGAGCAACATTGTTCGAACATAAGTATGTGAGGCTTGAAAAGATGGCTCATTCATTCTCTTGCTTGCAGCAGTCTTCTTCCTTTCTAGGAAATGCTCATAAGGACCCATGTTTAGTTAGTGGCATGTATAGAGCATTTTGATTTTGGGGAAACTGACTGTTTTGCAAGAATTTTAGGTTGTATGTAATATCTTATAAAATTCCCAAATGCATTTTTGATATGTTTGAATCCATGAAATTGACATCATAATCTATTTACACAATCGAATGACCACTTCTCAAGAATCGTGTTAGTCTTCATTTGTTTCGTTTTGAAATTTGGAATGTGATCTATTACGCATGACTTCGACTTCAAATTTTTGGTCCGTAACAATTTAGT

Coding sequence (CDS)

ATGGGAAGGTCTCGGAGGAAGTACAAGAGATCTCGGCCAAAGGTCCAGGTCGGCCTGCCGAAAAGGCACCCTAACGTTTTCAAGCCGTCCTTCTGCATGCCGCCGAAGCTTCGCTCCTTGCTCGGCGAACAATTTGAAGAAGATCCGGCATGGGATGAGAAAGCCAGTGTTATTAATAACTATAAGTCGTTTGGTGTTCTTTCTAACCCTAATTTGCTCAGCGTTCGTTCTCGAACTGATCACATTGTTGAGAGCGACTCCCTCCAGGTTCCTCCGTCTCAGTTGCCTTCCGATGATCTTGATTCTGTGCTTGATTCATCCGGTAGCGATGTGGAAGAGGACGATTTGAAAACAGCACTAGGAAAGAAGCGCAGAGATGGGAAATCAGGACCTCTAAAGCCTTTGACCACAATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAATACGGAGATGATTATGAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCACTCAGTTGGCACTCTGGAGAAACTATGCAAACGATATCACAGTTCGGGTAAGAATCCATTGATATTGACTCGTTAA

Protein sequence

MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDSSGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR
Homology
[Close]
BLAST of Cp4.1LG17g06980 vs. TrEMBL
Match: A0A0A0KAV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G396460 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.1e-87
Identity = 167/193 (86.53%), Postives = 178/193 (92.23%), Query Frame = 1 

Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINN 60
           MGRSRRKYK+SRPKV+VGLPKR+PNVFKPSFCMPPKLRSLL EQFEEDP WDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVP    PSDD D+VLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVP----PSDDPDTVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRY 180
           GKKR+DGKS PL+PLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSV TLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSS-GKNPLILTR 193
           +S    NPLILTR
Sbjct: 181 NSCLDSNPLILTR 189

[Close]
BLAST of Cp4.1LG17g06980 vs. TrEMBL
Match: A0A068VJU1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00013393001 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 7.6e-70
Identity = 138/190 (72.63%), Postives = 163/190 (85.79%), Query Frame = 1 

Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINN 60
           MGRSRRKY+RSRPKV+VGLPK+HP+VFKP+F +PPKLR+LL  Q  +   WD+ ASVI+N
Sbjct: 1   MGRSRRKYRRSRPKVRVGLPKKHPHVFKPAFNLPPKLRTLLDPQSSK---WDDTASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRT HI+E+DSLQVPP   PSDD ++    SGSD+EEDDLKTAL
Sbjct: 61  YKSFGVVSNPNLLSVRSRTSHIIETDSLQVPPPP-PSDDSNAF--DSGSDLEEDDLKTAL 120

Query: 121 GKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRY 180
           GKKR DGKS PL+PLTT+QR H+GRLI++YG+DYE MF DTKLN MQHSV TL+KLC+RY
Sbjct: 121 GKKRSDGKSAPLQPLTTMQRYHIGRLIDEYGEDYESMFKDTKLNKMQHSVATLKKLCRRY 180

Query: 181 HS-SGKNPLI 190
           H+  GKNPLI
Sbjct: 181 HTCQGKNPLI 184

[Close]
BLAST of Cp4.1LG17g06980 vs. TrEMBL
Match: A0A061DYF8_THECC (Nucleolar protein 16 OS=Theobroma cacao GN=TCM_004640 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.2e-68
Identity = 140/194 (72.16%), Postives = 161/194 (82.99%), Query Frame = 1 

Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINN 60
           MGRSRRKYK+SR KVQVGLP+++P+VFKPSF +PPKLRSL+ E  +    WD+KASVI N
Sbjct: 1   MGRSRRKYKQSRAKVQVGLPRKNPHVFKPSFTLPPKLRSLV-EVEDARSKWDDKASVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVP---PSQLPSDDLDSVLDSSGSDVEEDDLK 120
           YKSFGV+SNPN L VRSRT HIVESDSLQVP   P    +D+++ +   SGSD+EEDDLK
Sbjct: 61  YKSFGVVSNPNFLGVRSRTSHIVESDSLQVPHPPPYDKSADEVEPI--DSGSDLEEDDLK 120

Query: 121 TALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLC 180
           TALGKKRRDGKS  L+PLTT+QR+H+G LIEKYGDDY+ MFMDTKLN MQHSV TLEKLC
Sbjct: 121 TALGKKRRDGKSTHLQPLTTMQRLHIGLLIEKYGDDYQAMFMDTKLNKMQHSVATLEKLC 180

Query: 181 KRYHSSG-KNPLIL 191
           KRYH  G KNPLIL
Sbjct: 181 KRYHMFGHKNPLIL 191

[Close]
BLAST of Cp4.1LG17g06980 vs. TrEMBL
Match: A0A0V0HLF8_SOLCH (Putative nucleolar protein 16-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.6e-67
Identity = 138/199 (69.35%), Postives = 161/199 (80.90%), Query Frame = 1 

Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINN 60
           MG SRRKYKRSR KV+VGLPK++PNVFKP+F +PPKLRSL+         WD+K SVI+N
Sbjct: 1   MGGSRRKYKRSRTKVRVGLPKKNPNVFKPAFSLPPKLRSLVNSH------WDDKGSVIDN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPP-SQLP--SDDLDSV-----LDSSGSDVE 120
           YKSFGV+SNPNLL VR RT H++E+DSLQVPP  +LP  SDD D       LD SGS+VE
Sbjct: 61  YKSFGVVSNPNLLGVRCRTSHMIETDSLQVPPPKKLPPTSDDDDDADAFEDLDDSGSEVE 120

Query: 121 EDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGT 180
           EDDLK+ALGKKRRDGKS PL+PLTTIQRV++ RL+E+YGDDY+ MFMDTKLN MQHSV T
Sbjct: 121 EDDLKSALGKKRRDGKSAPLQPLTTIQRVYISRLVEEYGDDYQSMFMDTKLNKMQHSVAT 180

Query: 181 LEKLCKRYHS-SGKNPLIL 191
           LEKLCKRYH    KNPL++
Sbjct: 181 LEKLCKRYHMYKDKNPLLV 193

[Close]
BLAST of Cp4.1LG17g06980 vs. TrEMBL
Match: M1AT20_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011375 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.6e-67
Identity = 138/199 (69.35%), Postives = 161/199 (80.90%), Query Frame = 1 

Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINN 60
           MG SRRKYKRSR KV+VGLPK++PNVFKP+F +PPKLRSL+         WD+K SVI+N
Sbjct: 1   MGGSRRKYKRSRTKVRVGLPKKNPNVFKPAFSLPPKLRSLVNSH------WDDKGSVIDN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPP-SQLP--SDDLDSV-----LDSSGSDVE 120
           YKSFGV+SNPNLL VR RT H++E+DSLQVPP  +LP  SDD D       LD SGS+VE
Sbjct: 61  YKSFGVVSNPNLLGVRCRTSHMIETDSLQVPPPKKLPPTSDDDDDADAFEDLDDSGSEVE 120

Query: 121 EDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGT 180
           EDDLK+ALGKKRRDGKS PL+PLTTIQRV++ RL+E+YGDDY+ MFMDTKLN MQHSV T
Sbjct: 121 EDDLKSALGKKRRDGKSAPLQPLTTIQRVYISRLVEEYGDDYQSMFMDTKLNKMQHSVAT 180

Query: 181 LEKLCKRYHS-SGKNPLIL 191
           LEKLCKRYH    KNPL++
Sbjct: 181 LEKLCKRYHMYKDKNPLLV 193

[Close]
BLAST of Cp4.1LG17g06980 vs. TAIR10
Match: AT1G02870.1 (AT1G02870.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 236.9 bits (603), Expect = 1.0e-62
Identity = 118/196 (60.20%), Postives = 150/196 (76.53%), Query Frame = 1 

Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINN 60
           M RSRRKY+ SR KV+V LPK++PN+FKP+F  PPKLR+L+G+     P WD++ASVI N
Sbjct: 1   MARSRRKYRNSRAKVRVALPKKNPNIFKPAFNFPPKLRALMGDDV---PEWDDQASVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLD----SSGSDVEEDDL 120
           YKSFGV+SNPNLL +R+RTDH+++ DSL VPP   P  D     +     SGS++EEDDL
Sbjct: 61  YKSFGVISNPNLLGIRARTDHMIQDDSLNVPPPVEPPTDDPIAKEFEPIDSGSELEEDDL 120

Query: 121 KTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKL 180
           KTALGK+R+DGKS PL+PLTT+QR H+ RL+EK+GDD E M+ D KLNSMQHSV TL KL
Sbjct: 121 KTALGKQRKDGKSAPLQPLTTMQRTHIRRLVEKHGDDIEGMYRDRKLNSMQHSVATLRKL 180

Query: 181 CKRYH-SSGKNPLILT 192
           C RY     KNP++++
Sbjct: 181 CTRYQIYKDKNPILVS 193

[Close]
BLAST of Cp4.1LG17g06980 vs. NCBI nr
Match: gi|659101400|ref|XP_008451586.1| (PREDICTED: uncharacterized protein LOC103492822 [Cucumis melo])

HSP 1 Score: 336.7 bits (862), Expect = 2.8e-89
Identity = 170/193 (88.08%), Postives = 179/193 (92.75%), Query Frame = 1 

Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINN 60
           MGRSRRKYK+SRPKV+VGLPKR+PNVFKPSFCMPPKLRSLL EQFEEDP WDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVP    PSDD DSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVP----PSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRY 180
           GKKR+DGKS PL+PLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSV TLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSS-GKNPLILTR 193
           HS   KNPLILTR
Sbjct: 181 HSCLDKNPLILTR 189

[Close]
BLAST of Cp4.1LG17g06980 vs. NCBI nr
Match: gi|449436503|ref|XP_004136032.1| (PREDICTED: uncharacterized protein LOC101209910 [Cucumis sativus])

HSP 1 Score: 330.9 bits (847), Expect = 1.5e-87
Identity = 167/193 (86.53%), Postives = 178/193 (92.23%), Query Frame = 1 

Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINN 60
           MGRSRRKYK+SRPKV+VGLPKR+PNVFKPSFCMPPKLRSLL EQFEEDP WDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVP    PSDD D+VLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVP----PSDDPDTVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRY 180
           GKKR+DGKS PL+PLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSV TLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSS-GKNPLILTR 193
           +S    NPLILTR
Sbjct: 181 NSCLDSNPLILTR 189

[Close]
BLAST of Cp4.1LG17g06980 vs. NCBI nr
Match: gi|694429249|ref|XP_009342154.1| (PREDICTED: nucleolar protein 16-like [Pyrus x bretschneideri])

HSP 1 Score: 275.0 bits (702), Expect = 9.8e-71
Identity = 139/197 (70.56%), Postives = 163/197 (82.74%), Query Frame = 1 

Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEED-PAWDEKASVIN 60
           MGRSRRKYK+SR KV+VGLPK+ PNVFKP+FC+PPKLR+LL +Q     P WD + SVI 
Sbjct: 1   MGRSRRKYKQSRTKVRVGLPKKKPNVFKPAFCLPPKLRALLEQQDPASAPQWDAEGSVIQ 60

Query: 61  NYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLD---SSGSDVEEDDL 120
           NYKSFG +SNPNLLS+R+R  H+VESDSLQVPP   PSDD D+  +     GSD+EEDDL
Sbjct: 61  NYKSFGFVSNPNLLSLRARNSHVVESDSLQVPPP--PSDDPDAAAELDFGDGSDLEEDDL 120

Query: 121 KTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKL 180
           KT+LGKKRRDGKS PL+PLT +QR+H+GRLIEKYG+DY+RMFMDTKLN+MQHSV TLEKL
Sbjct: 121 KTSLGKKRRDGKSAPLQPLTAMQRLHIGRLIEKYGEDYQRMFMDTKLNAMQHSVATLEKL 180

Query: 181 CKRYH-SSGKNPLILTR 193
           CKRYH    +NP ILTR
Sbjct: 181 CKRYHVHKDRNPFILTR 195

[Close]
BLAST of Cp4.1LG17g06980 vs. NCBI nr
Match: gi|694439440|ref|XP_009346606.1| (PREDICTED: uncharacterized protein LOC103938330 [Pyrus x bretschneideri])

HSP 1 Score: 275.0 bits (702), Expect = 9.8e-71
Identity = 141/197 (71.57%), Postives = 164/197 (83.25%), Query Frame = 1 

Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEED-PAWDEKASVIN 60
           MGRSRRKYK+SR KV+VGLPKR PNVFKP+FC+PPKLR+LL +Q     P WD + SVI 
Sbjct: 1   MGRSRRKYKQSRTKVRVGLPKRKPNVFKPAFCLPPKLRALLEQQGPASAPRWDAEGSVIQ 60

Query: 61  NYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLD---SSGSDVEEDDL 120
           NYKSFG +SNPNLLS+RSR  H+VESDSLQVPP   PSDD D+  +   + GSD+EEDDL
Sbjct: 61  NYKSFGFVSNPNLLSLRSRNSHMVESDSLQVPPP--PSDDPDASAELDFADGSDLEEDDL 120

Query: 121 KTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKL 180
           KT+LGKKRRDGKS PL+PLT +QR+H+GRLIE+YGDDY+RMFMDTKLN+MQHSV TLEKL
Sbjct: 121 KTSLGKKRRDGKSAPLQPLTAMQRLHLGRLIEEYGDDYQRMFMDTKLNAMQHSVATLEKL 180

Query: 181 CKRYH-SSGKNPLILTR 193
           C RYH    +NPLILTR
Sbjct: 181 CSRYHVHKDRNPLILTR 195

[Close]
BLAST of Cp4.1LG17g06980 vs. NCBI nr
Match: gi|657989041|ref|XP_008386707.1| (PREDICTED: uncharacterized protein LOC103449194 [Malus domestica])

HSP 1 Score: 272.7 bits (696), Expect = 4.9e-70
Identity = 138/195 (70.77%), Postives = 160/195 (82.05%), Query Frame = 1 

Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEED-PAWDEKASVIN 60
           MGRSRRKYK+SR KV+VGLPKR PNVFKP+FC+PPKLR+LL +Q     P WD + SVI 
Sbjct: 1   MGRSRRKYKQSRTKVRVGLPKRKPNVFKPAFCLPPKLRALLAQQGPASAPQWDAEGSVIQ 60

Query: 61  NYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLD-SSGSDVEEDDLKT 120
           NYKSFG +SNPNLLS+RSR  H+VESDSLQVPP      D  + LD + GSD+EEDDLKT
Sbjct: 61  NYKSFGFVSNPNLLSLRSRNSHMVESDSLQVPPPASDDPDASAELDFADGSDLEEDDLKT 120

Query: 121 ALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCK 180
           +LGKKRRDGKS PL+PLT +QR+H+GRLIE+YGD Y+RMFMDTKLN MQHSV TLEKLC+
Sbjct: 121 SLGKKRRDGKSAPLQPLTAMQRLHLGRLIEEYGDXYQRMFMDTKLNKMQHSVATLEKLCR 180

Query: 181 RYH-SSGKNPLILTR 193
           RYH    +NPLILTR
Sbjct: 181 RYHVHKDRNPLILTR 195

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g06980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g06980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAV9_CUCSA1.1e-8786.53Uncharacterized protein OS=Cucumis sativus GN=Csa_7G396460 PE=4 SV=1[more]
A0A068VJU1_COFCA7.6e-7072.63Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00013393001 PE=4 SV=1[more]
A0A061DYF8_THECC3.2e-6872.16Nucleolar protein 16 OS=Theobroma cacao GN=TCM_004640 PE=4 SV=1[more]
A0A0V0HLF8_SOLCH1.6e-6769.35Putative nucleolar protein 16-like OS=Solanum chacoense PE=4 SV=1[more]
M1AT20_SOLTU1.6e-6769.35Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011375 PE=4 SV=1[more]
BLAST of Cp4.1LG17g06980 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G02870.11.0e-6260.20 FUNCTIONS IN: molecular_function unknown[more]
BLAST of Cp4.1LG17g06980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659101400|ref|XP_008451586.1|2.8e-8988.08PREDICTED: uncharacterized protein LOC103492822 [Cucumis melo][more]
gi|449436503|ref|XP_004136032.1|1.5e-8786.53PREDICTED: uncharacterized protein LOC101209910 [Cucumis sativus][more]
gi|694429249|ref|XP_009342154.1|9.8e-7170.56PREDICTED: nucleolar protein 16-like [Pyrus x bretschneideri][more]
gi|694439440|ref|XP_009346606.1|9.8e-7171.57PREDICTED: uncharacterized protein LOC103938330 [Pyrus x bretschneideri][more]
gi|657989041|ref|XP_008386707.1|4.9e-7070.77PREDICTED: uncharacterized protein LOC103449194 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019002Ribosome_biogenesis_Nop16
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0055085 transmembrane transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0005524 ATP binding
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g06980.1Cp4.1LG17g06980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019002Ribosome biogenesis protein Nop16PFAMPF09420Nop16coord: 98..181
score: 2.3
NoneNo IPR availablePANTHERPTHR13243HSPC111 PROTEIN-RELATEDcoord: 2..181
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g06980Cucsa.205640Cucumber (Gy14) v1cgycpeB0580
Cp4.1LG17g06980CmaCh08G004180Cucurbita maxima (Rimu)cmacpeB917
Cp4.1LG17g06980CmoCh17G010690Cucurbita moschata (Rifu)cmocpeB339
Cp4.1LG17g06980CmoCh08G004120Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g06980Cla015061Watermelon (97103) v1cpewmB311
Cp4.1LG17g06980Csa7G396460Cucumber (Chinese Long) v2cpecuB343
Cp4.1LG17g06980MELO3C016009Melon (DHL92) v3.5.1cpemeB293
Cp4.1LG17g06980ClCG09G005940Watermelon (Charleston Gray)cpewcgB280
Cp4.1LG17g06980CSPI07G17400Wild cucumber (PI 183967)cpecpiB344
Cp4.1LG17g06980Lsi02G023950Bottle gourd (USVL1VR-Ls)cpelsiB262
Cp4.1LG17g06980MELO3C016009.2Melon (DHL92) v3.6.1cpemedB341
Cp4.1LG17g06980CsaV3_7G029180Cucumber (Chinese Long) v3cpecucB0422
Cp4.1LG17g06980Bhi09G000709Wax gourdcpewgoB0420
Cp4.1LG17g06980CsGy7G015850Cucumber (Gy14) v2cgybcpeB931
Cp4.1LG17g06980Carg12105Silver-seed gourdcarcpeB0803
Cp4.1LG17g06980Carg07177Silver-seed gourdcarcpeB0161
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG17g06980Cp4.1LG12g05700Cucurbita pepo (Zucchini)cpecpeB157
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g06980Cucumber (Chinese Long) v3cpecucB0393
Cp4.1LG17g06980Wax gourdcpewgoB0376
Cp4.1LG17g06980Cucurbita pepo (Zucchini)cpecpeB336
Cp4.1LG17g06980Cucumber (Gy14) v1cgycpeB0189
Cp4.1LG17g06980Cucurbita maxima (Rimu)cmacpeB376
Cp4.1LG17g06980Cucurbita moschata (Rifu)cmocpeB232
Cp4.1LG17g06980Wild cucumber (PI 183967)cpecpiB316
Cp4.1LG17g06980Cucumber (Chinese Long) v2cpecuB315
Cp4.1LG17g06980Melon (DHL92) v3.5.1cpemeB318
Cp4.1LG17g06980Melon (DHL92) v3.6.1cpemedB375