Carg12105 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12105
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nucleolar protein 16
Location	Cucurbita_argyrosperma_scaffold_037 : 1256589 .. 1258610 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCATCTTCTACATCTAAACCCTAGCCACCGGCTTCACCGATCTGCAGAGGGAGATGGGAAGGTCTCGAAGGAAGTACAAGAGATCTCGGCCAAAGGTCCAGGTCGGCCTGCCGAAAAGGCACCCTAATGTTTTCAAGCCGTCGTTCTGCATGCCGCCGAAGCTCCGCTCCTTGCTCGGCGAACAATTTGAAGAAGATCCGGAATGGGATGAGAAAGCCAGTGTTATTAATAACTATAAGTCGTTTGGTGTTCTTTCTAACCCCAATTTGCTCAGCGTTCGTTCTCGAACTGATCACATTGTTGAGAGCGACTCCCTCCAGGTTCCTCCGTCTCAGTTGCCTTCCGATGATCTTGATTCTGTGCTTGATTCAACCGGTAGCGATGTGGAAGAGGACGGTGAGTTTTGAGCTTTTTTTTTTTTACTCTTTCGCTGTTGTTTTAAATTTCTGTTCGTGTGAGTGGATGATTCTCACGTCAATACTGTGATGTTTCCAAATTCGAAAAATATTTGTTTACATGAAATTAGTTGATTTTATGAAATATGATACCTTCCGCTCCAGGTTTAGTGAATTATCACTTGCAATAGTTTCTGCAACTTTGATAGTTTTTTGGTGTTCATGACCTGGAAATTTCGGAATAAGTAGCAGCTCTTCATTGAACCAAATTAGCCGTCCAAATTGATTGGATTTAGTTTACCATACATCATCTTTATGCAAACCTTTTGCTGAATAGTTATTTATGAAATGATTAGAGAGGAACTGAAATGGAACGAAGATTGATTTTGATTGTAATGTCTTATTATCATGAAGGGGATCAAAGAGGATGCCAAAACAAAATTTTGCGTTGCGTTTCTGAGTCTAGCTGAGATTGTGCTGATATTGTGATCTTTCCTTTGCGTTCTTTAGATTTGAAAACAGCACTAGGAAAGAAGCGCAGAGATGGGAAATCTGGACCTCTAAAGCCTTTGACCACAATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAATACGGAGATGATTATGAGGTGATTTTCAGTTTTACTTGCTCTTAAAGCTGCTTAATTTGCTTGTCTCATTGAAAATTGTCTTGCAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCACTCAGTTGGCACTCTGGAGAAACTATGCAAACGATATCACAGTTCGGGTAAGAATCCATTGATATTGACTCGTTAAAGATATTATCGATGGAACAACCCCCATCGTCTTTCAAATTGTTTTGTTGCAATAGATGAATCAGATATGGTATTATGATCATGAAATCTAATTGAGCAGCATTGTTCGAACACAATATATGAGGCTTGAAAAGATGGCTCATTCCTTCTCTTGCTTGCAGCAGTTTTCTTCCTTTCTAGGAAATGCTCATAAGGACCCATGTTTAGTTAGTGGCATGTATAGAGCATTTTGATTTTGGGGAAACCGACTGTTTTGCAAGAATTTTAGGTTGTATGTAATATCTTATAAAAATTCCCCAAATGCATTTTTGATATGTTTGAATCCATGAAATTGACATCCAAATCTATTTACAATCAGAATTGTGTACTTCATTAGTTTCGTTTTGAAATTTGGAATGTGATCTATTATTACACACGACTTTGACTTCAAACTTCTGGTTCGTAACCATTTAGTTCAAGAACGTTGAATTGGCTTCCATTGAGATGTCATTGGATTCTTGGGCATACAAGAAATCGATCTAACATCTTTTCATTTGAAATTCCCAATCAAAGACTTTTGACTTCAAATTTTTGGTCGGTTTGGTCGGTAACATTTTAGGTCAAGAACATTGAATTGGCTTCCATTGAGATGTTAGTTATCGAATGCTTGGGCATACAAGGAATCGGTCTAACATCTTTTCAATTGAAATTCCAATAAAAAACTAGTTCTATCAAGGTCGGACCTAAAGAGAAACTTTAACTCACACAATGTCTAGCTTGCATGTAATGATTTAATACCTAATTTTTGTCATATGATTCTACATTTCGTCATA

mRNA sequence

AATCATCTTCTACATCTAAACCCTAGCCACCGGCTTCACCGATCTGCAGAGGGAGATGGGAAGGTCTCGAAGGAAGTACAAGAGATCTCGGCCAAAGGTCCAGGTCGGCCTGCCGAAAAGGCACCCTAATGTTTTCAAGCCGTCGTTCTGCATGCCGCCGAAGCTCCGCTCCTTGCTCGGCGAACAATTTGAAGAAGATCCGGAATGGGATGAGAAAGCCAGTGTTATTAATAACTATAAGTCGTTTGGTGTTCTTTCTAACCCCAATTTGCTCAGCGTTCGTTCTCGAACTGATCACATTGTTGAGAGCGACTCCCTCCAGGTTCCTCCGTCTCAGTTGCCTTCCGATGATCTTGATTCTGTGCTTGATTCAACCGGTAGCGATGTGGAAGAGGACGATTTGAAAACAGCACTAGGAAAGAAGCGCAGAGATGGGAAATCTGGACCTCTAAAGCCTTTGACCACAATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAATACGGAGATGATTATGAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCACTCAGTTGGCACTCTGGAGAAACTATGCAAACGATATCACAGTTCGGGTAAGAATCCATTGATATTGACTCGTTAAAGATATTATCGATGGAACAACCCCCATCGTCTTTCAAATTGTTTTGTTGCAATAGATGAATCAGATATGGTATTATGATCATGAAATCTAATTGAGCAGCATTGTTCGAACACAATATATGAGGCTTGAAAAGATGGCTCATTCCTTCTCTTGCTTGCAGCAGTTTTCTTCCTTTCTAGGAAATGCTCATAAGGACCCATGTTTAGTTAGTGGCATGTATAGAGCATTTTGATTTTGGGGAAACCGACTGTTTTGCAAGAATTTTAGGTTGTATGTAATATCTTATAAAAATTCCCCAAATGCATTTTTGATATGTTTGAATCCATGAAATTGACATCCAAATCTATTTACAATCAGAATTGTGTACTTCATTAGTTTCGTTTTGAAATTTGGAATGTGATCTATTATTACACACGACTTTGACTTCAAACTTCTGGTTCGTAACCATTTAGTTCAAGAACGTTGAATTGGCTTCCATTGAGATGTCATTGGATTCTTGGGCATACAAGAAATCGATCTAACATCTTTTCATTTGAAATTCCCAATCAAAGACTTTTGACTTCAAATTTTTGGTCGGTTTGGTCGGTAACATTTTAGGTCAAGAACATTGAATTGGCTTCCATTGAGATGTTAGTTATCGAATGCTTGGGCATACAAGGAATCGGTCTAACATCTTTTCAATTGAAATTCCAATAAAAAACTAGTTCTATCAAGGTCGGACCTAAAGAGAAACTTTAACTCACACAATGTCTAGCTTGCATGTAATGATTTAATACCTAATTTTTGTCATATGATTCTACATTTCGTCATA

Coding sequence (CDS)

ATGGGAAGGTCTCGAAGGAAGTACAAGAGATCTCGGCCAAAGGTCCAGGTCGGCCTGCCGAAAAGGCACCCTAATGTTTTCAAGCCGTCGTTCTGCATGCCGCCGAAGCTCCGCTCCTTGCTCGGCGAACAATTTGAAGAAGATCCGGAATGGGATGAGAAAGCCAGTGTTATTAATAACTATAAGTCGTTTGGTGTTCTTTCTAACCCCAATTTGCTCAGCGTTCGTTCTCGAACTGATCACATTGTTGAGAGCGACTCCCTCCAGGTTCCTCCGTCTCAGTTGCCTTCCGATGATCTTGATTCTGTGCTTGATTCAACCGGTAGCGATGTGGAAGAGGACGATTTGAAAACAGCACTAGGAAAGAAGCGCAGAGATGGGAAATCTGGACCTCTAAAGCCTTTGACCACAATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAATACGGAGATGATTATGAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCACTCAGTTGGCACTCTGGAGAAACTATGCAAACGATATCACAGTTCGGGTAAGAATCCATTGATATTGACTCGTTAA

Protein sequence

MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPEWDEKASVINNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDSTGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRYHSSGKNPLILTR

Homology

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BLAST of Carg12105 vs. NCBI nr
Match: XP_023514821.1 (nucleolar protein 16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 383.3 bits (983), Expect = 5.0e-103
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPEWDEKASVINN 60
           MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDP WDEKASVINN
Sbjct: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPAWDEKASVINN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDSTGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDS+GSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRY 180
           GKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRY
Sbjct: 121 GKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRY 180

Query: 181 HSSGKNPLILTR 193
           HSSGKNPLILTR
Sbjct: 181 HSSGKNPLILTR 192

[Close]

BLAST of Carg12105 vs. NCBI nr
Match: XP_023004668.1 (uncharacterized protein LOC111497894 [Cucurbita maxima])

HSP 1 Score: 377.9 bits (969), Expect = 2.1e-101
Identity = 188/192 (97.92%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPEWDEKASVINN 60
           MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLL EQFEEDP WDEKASVINN
Sbjct: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLVEQFEEDPAWDEKASVINN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDSTGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDS+GSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRY 180
           GKKRRDGKSGPLKPLTTIQRVHVGRLIEKYG+DYERMFMDTKLNSMQHSVGTLEKLCKRY
Sbjct: 121 GKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGNDYERMFMDTKLNSMQHSVGTLEKLCKRY 180

Query: 181 HSSGKNPLILTR 193
           HSSGKNPLILTR
Sbjct: 181 HSSGKNPLILTR 192

[Close]

BLAST of Carg12105 vs. NCBI nr
Match: XP_022991747.1 (uncharacterized protein LOC111488281 [Cucurbita maxima])

HSP 1 Score: 348.2 bits (892), Expect = 1.8e-92
Identity = 177/193 (91.71%), Postives = 182/193 (94.30%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPEWDEKASVINN 60
           MGRSRRKYKRSR KVQVGLPKR+PNVFKPSFCMPPKLRSLL EQFEEDP WDEKASVI+N
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDSTGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPS  PSDD DSVLDS+GSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRY 180
           GKKR+DGKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSV TLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSS-GKNPLILTR 193
           HS   KNPLILTR
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Carg12105 vs. NCBI nr
Match: XP_022954094.1 (uncharacterized protein LOC111456462 [Cucurbita moschata])

HSP 1 Score: 347.1 bits (889), Expect = 4.0e-92
Identity = 177/193 (91.71%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPEWDEKASVINN 60
           MGRSRRKYKRSR KVQVGLPKR+PNVFKPSFCMPPKLRSLL EQFEEDP WDEKASVI+N
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDSTGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESD LQVPPS  PSDD DSVLDS+GSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRY 180
           GKKRRDGKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSV TLEKLCKRY
Sbjct: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSS-GKNPLILTR 193
           HS   KNPLILTR
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Carg12105 vs. NCBI nr
Match: XP_023547523.1 (uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 346.3 bits (887), Expect = 6.8e-92
Identity = 176/193 (91.19%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPEWDEKASVINN 60
           MGRSRRKYKRSR KVQVGLPKR+PNVFKPSFCMPPKLRSLL EQFEEDP WDEKASVI+N
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDSTGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPS  PSDD DSVLDS+GSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRY 180
           GKKR+DGKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSV TLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSS-GKNPLILTR 193
           H    KNPLILTR
Sbjct: 181 HCCLDKNPLILTR 193

[Close]

BLAST of Carg12105 vs. TAIR10
Match: AT1G02870.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 238.4 bits (607), Expect = 3.6e-63
Identity = 118/196 (60.20%), Postives = 152/196 (77.55%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPEWDEKASVINN 60
           M RSRRKY+ SR KV+V LPK++PN+FKP+F  PPKLR+L+G   ++ PEWD++ASVI N
Sbjct: 1   MARSRRKYRNSRAKVRVALPKKNPNIFKPAFNFPPKLRALMG---DDVPEWDDQASVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLD----STGSDVEEDDL 120
           YKSFGV+SNPNLL +R+RTDH+++ DSL VPP   P  D     +     +GS++EEDDL
Sbjct: 61  YKSFGVISNPNLLGIRARTDHMIQDDSLNVPPPVEPPTDDPIAKEFEPIDSGSELEEDDL 120

Query: 121 KTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKL 180
           KTALGK+R+DGKS PL+PLTT+QR H+ RL+EK+GDD E M+ D KLNSMQHSV TL KL
Sbjct: 121 KTALGKQRKDGKSAPLQPLTTMQRTHIRRLVEKHGDDIEGMYRDRKLNSMQHSVATLRKL 180

Query: 181 CKRYH-SSGKNPLILT 192
           C RY     KNP++++
Sbjct: 181 CTRYQIYKDKNPILVS 193

[Close]

BLAST of Carg12105 vs. Swiss-Prot
Match: sp|Q75AB6|NOP16_ASHGO (Nucleolar protein 16 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=NOP16 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.8e-04
Identity = 30/99 (30.30%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 86  DSLQVPPSQLPSDDLDSVLDSTGSDVEEDDLKTALGKKRRDGKSGPLKPLTTIQRVH--- 145
           D ++V    + + D+D  +      +E+D +KT + ++     S P+      Q      
Sbjct: 128 DVVKVVYGTMKTVDVDEDISELKQKLEQDKVKTEVVQELESYASRPVNRRVRYQSSREEE 187

Query: 146 -VGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRY 181
            +GRL EK+G+DY  M  D KLN  Q SVG L++  K++
Sbjct: 188 WLGRLYEKHGEDYNSMARDLKLNIYQQSVGDLKRRMKKW 226

[Close]

BLAST of Carg12105 vs. TrEMBL
Match: tr|A0A1S3BSM4|A0A1S3BSM4_CUCME (uncharacterized protein LOC103492822 OS=Cucumis melo OX=3656 GN=LOC103492822 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.0e-88
Identity = 169/193 (87.56%), Postives = 179/193 (92.75%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPEWDEKASVINN 60
           MGRSRRKYK+SRPKV+VGLPKR+PNVFKPSFCMPPKLRSLL EQFEEDP WDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDSTGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVP    PSDD DSVLDS+GSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVP----PSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRY 180
           GKKR+DGKS PL+PLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSV TLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSS-GKNPLILTR 193
           HS   KNPLILTR
Sbjct: 181 HSCLDKNPLILTR 189

[Close]

BLAST of Carg12105 vs. TrEMBL
Match: tr|A0A0A0KAV9|A0A0A0KAV9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396460 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 5.7e-87
Identity = 166/193 (86.01%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPEWDEKASVINN 60
           MGRSRRKYK+SRPKV+VGLPKR+PNVFKPSFCMPPKLRSLL EQFEEDP WDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDSTGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVP    PSDD D+VLDS+GSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVP----PSDDPDTVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLCKRY 180
           GKKR+DGKS PL+PLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSV TLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSS-GKNPLILTR 193
           +S    NPLILTR
Sbjct: 181 NSCLDSNPLILTR 189

[Close]

BLAST of Carg12105 vs. TrEMBL
Match: tr|A0A2N9J345|A0A2N9J345_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58633 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.8e-69
Identity = 137/195 (70.26%), Postives = 159/195 (81.54%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDP-EWDEKASVIN 60
           MG SRRKYKRS+PKV+VGLPK++PNVFKP+FC+PPKLR+L+    ++DP  WD+ ASVI 
Sbjct: 1   MGGSRRKYKRSKPKVRVGLPKKNPNVFKPAFCVPPKLRALI----DQDPSNWDDTASVIQ 60

Query: 61  NYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDL----DSVLDSTGSDVEEDD 120
           NYKSFGV+SNPN L +RSRT HI+ESDSLQVPP      D     D  L  +GSD+EEDD
Sbjct: 61  NYKSFGVVSNPNFLGIRSRTSHIIESDSLQVPPPPSKHSDEAETDDHELSDSGSDLEEDD 120

Query: 121 LKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEK 180
           LKTALGK+RRDGKS P KPLTTIQRV+  RLIEKYGDDYERMFMDTKLN+MQHSV TLEK
Sbjct: 121 LKTALGKQRRDGKSAPPKPLTTIQRVYFSRLIEKYGDDYERMFMDTKLNAMQHSVATLEK 180

Query: 181 LCKRYHSSGKNPLIL 191
           LCKRYH +G   L++
Sbjct: 181 LCKRYHMNGDEKLLI 191

[Close]

BLAST of Carg12105 vs. TrEMBL
Match: tr|A0A061DYF8|A0A061DYF8_THECC (Nucleolar protein 16 OS=Theobroma cacao OX=3641 GN=TCM_004640 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 7.7e-68
Identity = 139/194 (71.65%), Postives = 162/194 (83.51%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPEWDEKASVINN 60
           MGRSRRKYK+SR KVQVGLP+++P+VFKPSF +PPKLRSL+ E  +   +WD+KASVI N
Sbjct: 1   MGRSRRKYKQSRAKVQVGLPRKNPHVFKPSFTLPPKLRSLV-EVEDARSKWDDKASVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQV---PPSQLPSDDLDSVLDSTGSDVEEDDLK 120
           YKSFGV+SNPN L VRSRT HIVESDSLQV   PP    +D+++ +   +GSD+EEDDLK
Sbjct: 61  YKSFGVVSNPNFLGVRSRTSHIVESDSLQVPHPPPYDKSADEVEPI--DSGSDLEEDDLK 120

Query: 121 TALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEKLC 180
           TALGKKRRDGKS  L+PLTT+QR+H+G LIEKYGDDY+ MFMDTKLN MQHSV TLEKLC
Sbjct: 121 TALGKKRRDGKSTHLQPLTTMQRLHIGLLIEKYGDDYQAMFMDTKLNKMQHSVATLEKLC 180

Query: 181 KRYHSSG-KNPLIL 191
           KRYH  G KNPLIL
Sbjct: 181 KRYHMFGHKNPLIL 191

[Close]

BLAST of Carg12105 vs. TrEMBL
Match: tr|A0A1S3ZK79|A0A1S3ZK79_TOBAC (uncharacterized protein LOC107787700 OS=Nicotiana tabacum OX=4097 GN=LOC107787700 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.3e-67
Identity = 131/196 (66.84%), Postives = 159/196 (81.12%), Query Frame = 0


Query: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLGEQFEEDPEWDEKASVINN 60
           MG SRRKYKRS+PKV+VGLPK++PN+FKP+F +PPKLRSL+      +  WD+K SVI+N
Sbjct: 1   MGGSRRKYKRSKPKVRVGLPKKNPNIFKPAFTLPPKLRSLV------NSHWDDKGSVIDN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQL-----PSDDLDSVLDSTGSDVEEDD 120
           YK+FGV+SNPN+L +R RT H++E+DSLQVPP Q       + D    LD +GS+VEEDD
Sbjct: 61  YKAFGVVSNPNMLGLRCRTSHMIETDSLQVPPQQXXXXSNDATDAFEALDDSGSEVEEDD 120

Query: 121 LKTALGKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVGTLEK 180
           LKTALGKKRRDGK  PL+PLT+IQRVH+GRL+EKYGDD++ MFMDTKLN MQHSV TLEK
Sbjct: 121 LKTALGKKRRDGKIAPLQPLTSIQRVHIGRLVEKYGDDFQSMFMDTKLNKMQHSVATLEK 180

Query: 181 LCKRYH-SSGKNPLIL 191
           LCKRYH    KNPL+L
Sbjct: 181 LCKRYHMCQNKNPLLL 190

The following BLAST results are available for this feature:

BLAST of Carg12105 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514821.1	5.0e-103	98.96	nucleolar protein 16-like [Cucurbita pepo subsp. pepo]	[more]
XP_023004668.1	2.1e-101	97.92	uncharacterized protein LOC111497894 [Cucurbita maxima]	[more]
XP_022991747.1	1.8e-92	91.71	uncharacterized protein LOC111488281 [Cucurbita maxima]	[more]
XP_022954094.1	4.0e-92	91.71	uncharacterized protein LOC111456462 [Cucurbita moschata]	[more]
XP_023547523.1	6.8e-92	91.19	uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg12105 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G02870.1	3.6e-63	60.20	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Carg12105 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q75AB6\|NOP16_ASHGO	2.8e-04	30.30	Nucleolar protein 16 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9...	[more]

BLAST of Carg12105 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BSM4\|A0A1S3BSM4_CUCME	1.0e-88	87.56	uncharacterized protein LOC103492822 OS=Cucumis melo OX=3656 GN=LOC103492822 PE=...	[more]
tr\|A0A0A0KAV9\|A0A0A0KAV9_CUCSA	5.7e-87	86.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396460 PE=4 SV=1	[more]
tr\|A0A2N9J345\|A0A2N9J345_FAGSY	1.8e-69	70.26	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58633 PE=4 SV=1	[more]
tr\|A0A061DYF8\|A0A061DYF8_THECC	7.7e-68	71.65	Nucleolar protein 16 OS=Theobroma cacao OX=3641 GN=TCM_004640 PE=4 SV=1	[more]
tr\|A0A1S3ZK79\|A0A1S3ZK79_TOBAC	1.3e-67	66.84	uncharacterized protein LOC107787700 OS=Nicotiana tabacum OX=4097 GN=LOC10778770...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019002	Ribosome_biogenesis_Nop16

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12105-RA	Carg12105-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019002	Ribosome biogenesis protein Nop16	PFAM	PF09420	Nop16	coord: 98..181 e-value: 2.5E-17 score: 63.5
IPR019002	Ribosome biogenesis protein Nop16	PANTHER	PTHR13243	HSPC111 PROTEIN-RELATED	coord: 1..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..104

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12105	Cla015061	Watermelon (97103) v1	carwmB0559
Carg12105	Csa7G396460	Cucumber (Chinese Long) v2	carcuB0594
Carg12105	MELO3C016009	Melon (DHL92) v3.5.1	carmeB0566
Carg12105	ClCG09G005940	Watermelon (Charleston Gray)	carwcgB0547
Carg12105	CSPI07G17400	Wild cucumber (PI 183967)	carcpiB0599
Carg12105	Cucsa.205640	Cucumber (Gy14) v1	carcgyB0640
Carg12105	CmaCh08G004180	Cucurbita maxima (Rimu)	carcmaB0792
Carg12105	CmoCh08G004120	Cucurbita moschata (Rifu)	carcmoB0771
Carg12105	CmoCh17G010690	Cucurbita moschata (Rifu)	carcmoB0767
Carg12105	Lsi02G023950	Bottle gourd (USVL1VR-Ls)	carlsiB511
Carg12105	Cp4.1LG17g06980	Cucurbita pepo (Zucchini)	carcpeB0803
Carg12105	CsGy7G015850	Cucumber (Gy14) v2	carcgybB0569
Carg12105	MELO3C016009.2	Melon (DHL92) v3.6.1	carmedB0572
Carg12105	CsaV3_7G029180	Cucumber (Chinese Long) v3	carcucB0601
Carg12105	Cla97C09G168490	Watermelon (97103) v2	carwmbB0590
Carg12105	Bhi09G000709	Wax gourd	carwgoB0673

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12105	Carg07177	Silver-seed gourd	carcarB130

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12105	Cucurbita maxima (Rimu)	carcmaB0787
Carg12105	Cucurbita pepo (Zucchini)	carcpeB0801