Cp4.1LG17g06120 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g06120
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEthylene-responsive transcription factor
LocationCp4.1LG17 : 6936608 .. 6936793 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTATCGGTGGGAGGTCGGGTGCTCGCCTGTCTTGGCGCTCAAACGACGTCACACGATACGGAGGAAGAAGATGGCAGAAGCCGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAAAATGTAGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTAGAAGAACTTTTAAGTTTGACTTCTTAA

mRNA sequence

ATGAAGTATCGGTGGGAGGTCGGGTGCTCGCCTGTCTTGGCGCTCAAACGACGTCACACGATACGGAGGAAGAAGATGGCAGAAGCCGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAAAATGTAGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTAGAAGAACTTTTAAGTTTGACTTCTTAA

Coding sequence (CDS)

ATGAAGTATCGGTGGGAGGTCGGGTGCTCGCCTGTCTTGGCGCTCAAACGACGTCACACGATACGGAGGAAGAAGATGGCAGAAGCCGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAAAATGTAGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTAGAAGAACTTTTAAGTTTGACTTCTTAA

Protein sequence

MKYRWEVGCSPVLALKRRHTIRRKKMAEAEKMEKKMKKKKNVVVFEDLGVEYLEELLSLTS
Homology
[Close]
BLAST of Cp4.1LG17g06120 vs. Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 6.4e-08
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1 

Query: 1   MKYRWEVGCSPVLALKRRHTIRRK---KMAEAEKMEKKMKKKKNVVVFEDLGVEYLEELL 58
           +KY +E GCSPV+ALKR+H++RR+   K  +    + +  K  NVVVFEDLG +YLEELL
Sbjct: 150 IKYTYEDGCSPVVALKRKHSMRRRMTNKKTKDSDFDHRSVKLDNVVVFEDLGEQYLEELL 209

[Close]
BLAST of Cp4.1LG17g06120 vs. TrEMBL
Match: A0A0A0K4U4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375820 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.3e-19
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 1 

Query: 1   MKYRWEVGCSPVLALKRRHTIRRKKMAEAEKMEKKM--KKKKNVVVFEDLGVEYLEELLS 60
           MKYRWEVG SPVLALKRRH+I+RK+MAE EKMEKKM  KKKK+VVVFEDLGVEYLEELLS
Sbjct: 169 MKYRWEVGSSPVLALKRRHSIQRKRMAEVEKMEKKMMKKKKKSVVVFEDLGVEYLEELLS 228

Query: 61  LTS 62
           LTS
Sbjct: 229 LTS 231

[Close]
BLAST of Cp4.1LG17g06120 vs. TrEMBL
Match: A0A0A0L7G2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G389850 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.2e-10
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 1 

Query: 1   MKYRWEVGCSPVLALKRRHTIRRKKMAEAEKM----EKKMKKKKNVVVFEDLGVEYLEEL 60
           ++Y  E GCSPV+ALKR+H++RRK +A A       +KKMKKK NVV+ EDLG EYLEEL
Sbjct: 153 IEYELEEGCSPVVALKRKHSMRRKSVAAATAAVAVEKKKMKKKNNVVILEDLGTEYLEEL 212

Query: 61  LSLTS 62
           L L+S
Sbjct: 213 LMLSS 217

[Close]
BLAST of Cp4.1LG17g06120 vs. TrEMBL
Match: A0A067JRM4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17700 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-08
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 1 

Query: 1   MKYRWEVGCSPVLALKRRHTIRRK---KMAEAEKMEKKMKKKKNVVVFEDLGVEYLEELL 59
           +KYR+E GCSPV+ALK++H++RRK   K ++ E  E    +K+NVVV EDLG EYLEELL
Sbjct: 154 IKYRFEDGCSPVIALKKKHSMRRKSTSKKSKKETNEVNTSRKQNVVVLEDLGAEYLEELL 213

[Close]
BLAST of Cp4.1LG17g06120 vs. TrEMBL
Match: A0A067E454_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047387mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-08
Identity = 36/60 (60.00%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 1   MKYRWEVGCSPVLALKRRHTIRRKKMAEAEKMEKKMKKKKNVVVFEDLGVEYLEELLSLT 60
           MKY +EVG SPVL LK+RH+++RK  ++ +  EK+M + +NVVVFEDLG EYLEELLS++
Sbjct: 177 MKYDFEVGSSPVLTLKKRHSMKRKGESKKKIKEKEM-RLENVVVFEDLGTEYLEELLSIS 235

[Close]
BLAST of Cp4.1LG17g06120 vs. TrEMBL
Match: V4TR80_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024142mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-08
Identity = 36/60 (60.00%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 1   MKYRWEVGCSPVLALKRRHTIRRKKMAEAEKMEKKMKKKKNVVVFEDLGVEYLEELLSLT 60
           MKY +EVG SPVL LK+RH+++RK  ++ +  EK+M + +NVVVFEDLG EYLEELLS++
Sbjct: 177 MKYDFEVGSSPVLTLKKRHSMKRKGESKKKIKEKEM-RLENVVVFEDLGTEYLEELLSIS 235

[Close]
BLAST of Cp4.1LG17g06120 vs. TAIR10
Match: AT3G23240.1 (AT3G23240.1 ethylene response factor 1)

HSP 1 Score: 57.4 bits (137), Expect = 3.6e-09
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1 

Query: 1   MKYRWEVGCSPVLALKRRHTIRRK---KMAEAEKMEKKMKKKKNVVVFEDLGVEYLEELL 58
           +KY +E GCSPV+ALKR+H++RR+   K  +    + +  K  NVVVFEDLG +YLEELL
Sbjct: 150 IKYTYEDGCSPVVALKRKHSMRRRMTNKKTKDSDFDHRSVKLDNVVVFEDLGEQYLEELL 209

[Close]
BLAST of Cp4.1LG17g06120 vs. NCBI nr
Match: gi|449462495|ref|XP_004148976.1| (PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 6.2e-19
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 1 

Query: 1   MKYRWEVGCSPVLALKRRHTIRRKKMAEAEKMEKKM--KKKKNVVVFEDLGVEYLEELLS 60
           MKYRWEVG SPVLALKRRH+I+RK+MAE EKMEKKM  KKKK+VVVFEDLGVEYLEELLS
Sbjct: 169 MKYRWEVGSSPVLALKRRHSIQRKRMAEVEKMEKKMMKKKKKSVVVFEDLGVEYLEELLS 228

Query: 61  LTS 62
           LTS
Sbjct: 229 LTS 231

[Close]
BLAST of Cp4.1LG17g06120 vs. NCBI nr
Match: gi|659100760|ref|XP_008451254.1| (PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 3.4e-17
Identity = 54/64 (84.38%), Postives = 58/64 (90.62%), Query Frame = 1 

Query: 1   MKYRWEVGCSPVLALKRRHTIRRKKMAEAEKMEKKM---KKKKNVVVFEDLGVEYLEELL 60
           MKYR EVG SPVLALKRRH+I+RK+MAE EKMEKKM   KKKK+VVVFEDLGVEYLEELL
Sbjct: 172 MKYRREVGSSPVLALKRRHSIQRKRMAEVEKMEKKMMKKKKKKSVVVFEDLGVEYLEELL 231

Query: 61  SLTS 62
           SLTS
Sbjct: 232 SLTS 235

[Close]
BLAST of Cp4.1LG17g06120 vs. NCBI nr
Match: gi|449468546|ref|XP_004151982.1| (PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 8.9e-10
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 1 

Query: 1   MKYRWEVGCSPVLALKRRHTIRRKKMAEAEKM----EKKMKKKKNVVVFEDLGVEYLEEL 60
           ++Y  E GCSPV+ALKR+H++RRK +A A       +KKMKKK NVV+ EDLG EYLEEL
Sbjct: 153 IEYELEEGCSPVVALKRKHSMRRKSVAAATAAVAVEKKKMKKKNNVVILEDLGTEYLEEL 212

Query: 61  LSLTS 62
           L L+S
Sbjct: 213 LMLSS 217

[Close]
BLAST of Cp4.1LG17g06120 vs. NCBI nr
Match: gi|659093226|ref|XP_008447432.1| (PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 8.9e-10
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 

Query: 1   MKYRWEVGCSPVLALKRRHTIRRKKMAEAEKM--EKKMKKKKNVVVFEDLGVEYLEELLS 60
           ++Y+ E GCSPV+ALK++H++RRK +A A     +KKMKKK NVV+ EDLG EYLEELL 
Sbjct: 153 IEYQLEEGCSPVVALKKKHSMRRKSVAAATAAVEKKKMKKKNNVVILEDLGTEYLEELLM 212

Query: 61  LTS 62
           L+S
Sbjct: 213 LSS 215

[Close]
BLAST of Cp4.1LG17g06120 vs. NCBI nr
Match: gi|1009173946|ref|XP_015868087.1| (PREDICTED: ethylene-responsive transcription factor 1B-like [Ziziphus jujuba])

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-09
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 1 

Query: 1   MKYRWEVGCSPVLALKRRHTIRRKKMAEAEKMEKKMKKKKNVVVFEDLGVEYLEELLSLT 60
           MKY+WE GCSPV+ LK++H++RRK+++   K+     KK+ VVV EDLG  YLEELLSL+
Sbjct: 171 MKYQWEEGCSPVMTLKKKHSMRRKRISRKSKV-----KKEEVVVLEDLGAAYLEELLSLS 226

Query: 61  S 62
           S
Sbjct: 231 S 226

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g06120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ERF92_ARATH6.4e-0853.33Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=... [more]
BLAST of Cp4.1LG17g06120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4U4_CUCSA4.3e-1987.30Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375820 PE=4 SV=1[more]
A0A0A0L7G2_CUCSA6.2e-1060.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G389850 PE=4 SV=1[more]
A0A067JRM4_JATCU1.5e-0859.02Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17700 PE=4 SV=1[more]
A0A067E454_CITSI2.6e-0860.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047387mg PE=4 SV=1[more]
V4TR80_9ROSI2.6e-0860.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024142mg PE=4 SV=1[more]
BLAST of Cp4.1LG17g06120 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23240.13.6e-0953.33 ethylene response factor 1[more]
BLAST of Cp4.1LG17g06120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462495|ref|XP_004148976.1|6.2e-1987.30PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis sativus][more]
gi|659100760|ref|XP_008451254.1|3.4e-1784.38PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis melo][more]
gi|449468546|ref|XP_004151982.1|8.9e-1060.00PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis sativus][more]
gi|659093226|ref|XP_008447432.1|8.9e-1060.32PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis melo][more]
gi|1009173946|ref|XP_015868087.1|1.5e-0957.38PREDICTED: ethylene-responsive transcription factor 1B-like [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0050896 response to stimulus
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g06120.1Cp4.1LG17g06120.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 22..42
scor
NoneNo IPR availablePANTHERPTHR31190FAMILY NOT NAMEDcoord: 1..61
score: 1.4
NoneNo IPR availablePANTHERPTHR31190:SF3SUBFAMILY NOT NAMEDcoord: 1..61
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g06120CmaCh08G002940Cucurbita maxima (Rimu)cmacpeB917
Cp4.1LG17g06120CmoCh08G002920Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g06120MELO3C015737.2Melon (DHL92) v3.6.1cpemedB348
Cp4.1LG17g06120CsaV3_7G027380Cucumber (Chinese Long) v3cpecucB0423
Cp4.1LG17g06120CsGy7G014120Cucumber (Gy14) v2cgybcpeB932
Cp4.1LG17g06120Carg05117Silver-seed gourdcarcpeB0126
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g06120Wax gourdcpewgoB0416
Cp4.1LG17g06120Cucumber (Gy14) v1cgycpeB1032
Cp4.1LG17g06120Wild cucumber (PI 183967)cpecpiB345
Cp4.1LG17g06120Cucumber (Chinese Long) v2cpecuB344
Cp4.1LG17g06120Bottle gourd (USVL1VR-Ls)cpelsiB262
Cp4.1LG17g06120Watermelon (Charleston Gray)cpewcgB280
Cp4.1LG17g06120Watermelon (97103) v1cpewmB311
Cp4.1LG17g06120Melon (DHL92) v3.5.1cpemeB300