Carg05117 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05117
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ethylene-responsive transcription factor 1B-like
Location	Cucurbita_argyrosperma_scaffold_060 : 1480349 .. 1480987 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCTGGATAACCATCTGTTTGGTTACCAAGAAAATTTTGAAAATTTTCCCGGAAAACAGAATTCCCATCTCTCATTTCACTTCAATTACTTGGAAGAGATGTTGTTTGCCGACATGTCGTTATCGTCATCGTCATCGTCGTCTGATTCGAGCCCTTGTTTGTCTCCGGAGATGCACGTTAAGGAGGAGATAGAAGACGGCGATATCATCGTGCAAGACGCTCAGACACAGAAGGAGGAGAGGGCTTATAGAGGGGTGCGGCGGAGGCCGTGGGGGAAGTACGCAGCCGAGATAAGAGACTCGACTCGACAAGGGGTGAGGGTTTGGTTGGGGACGTTTGATAGTGCGGAGGCTGCAGCATTGGCTTATGACCAAGCCGCATTTTGCATGAGAGGTGCATTAGCCACACTCAATTTTCCGGTGGAGGTTGTTCGAGAGTCGCTCTATGAAATGAAGTATCGGTGGGAAGTCGGGTGTTCGCCTGTCTTGGCGCTCAAACGACGTCACACGATACGGAGGAAGAAGATGGCAGAAGCCGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAAAATGTAGTTGTTTTTGAGGATTTGGGTGTCGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA

mRNA sequence

ATGTCCCTGGATAACCATCTGTTTGGTTACCAAGAAAATTTTGAAAATTTTCCCGGAAAACAGAATTCCCATCTCTCATTTCACTTCAATTACTTGGAAGAGATGTTGTTTGCCGACATGTCGTTATCGTCATCGTCATCGTCGTCTGATTCGAGCCCTTGTTTGTCTCCGGAGATGCACGTTAAGGAGGAGATAGAAGACGGCGATATCATCGTGCAAGACGCTCAGACACAGAAGGAGGAGAGGGCTTATAGAGGGGTGCGGCGGAGGCCGTGGGGGAAGTACGCAGCCGAGATAAGAGACTCGACTCGACAAGGGGTGAGGGTTTGGTTGGGGACGTTTGATAGTGCGGAGGCTGCAGCATTGGCTTATGACCAAGCCGCATTTTGCATGAGAGGTGCATTAGCCACACTCAATTTTCCGGTGGAGGTTGTTCGAGAGTCGCTCTATGAAATGAAGTATCGGTGGGAAGTCGGGTGTTCGCCTGTCTTGGCGCTCAAACGACGTCACACGATACGGAGGAAGAAGATGGCAGAAGCCGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAAAATGTAGTTGTTTTTGAGGATTTGGGTGTCGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA

Coding sequence (CDS)

ATGTCCCTGGATAACCATCTGTTTGGTTACCAAGAAAATTTTGAAAATTTTCCCGGAAAACAGAATTCCCATCTCTCATTTCACTTCAATTACTTGGAAGAGATGTTGTTTGCCGACATGTCGTTATCGTCATCGTCATCGTCGTCTGATTCGAGCCCTTGTTTGTCTCCGGAGATGCACGTTAAGGAGGAGATAGAAGACGGCGATATCATCGTGCAAGACGCTCAGACACAGAAGGAGGAGAGGGCTTATAGAGGGGTGCGGCGGAGGCCGTGGGGGAAGTACGCAGCCGAGATAAGAGACTCGACTCGACAAGGGGTGAGGGTTTGGTTGGGGACGTTTGATAGTGCGGAGGCTGCAGCATTGGCTTATGACCAAGCCGCATTTTGCATGAGAGGTGCATTAGCCACACTCAATTTTCCGGTGGAGGTTGTTCGAGAGTCGCTCTATGAAATGAAGTATCGGTGGGAAGTCGGGTGTTCGCCTGTCTTGGCGCTCAAACGACGTCACACGATACGGAGGAAGAAGATGGCAGAAGCCGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAAAATGTAGTTGTTTTTGAGGATTTGGGTGTCGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA

Protein sequence

MSLDNHLFGYQENFENFPGKQNSHLSFHFNYLEEMLFADMSLSSSSSSSDSSPCLSPEMHVKEEIEDGDIIVQDAQTQKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGALATLNFPVEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKKMAEAEKMEKKMKKKKNVVVFEDLGVEYLEELLSLTS

Homology

[Close]

BLAST of Carg05117 vs. NCBI nr
Match: XP_022959670.1 (ethylene-responsive transcription factor 1B-like [Cucurbita moschata])

HSP 1 Score: 379.8 bits (974), Expect = 6.1e-102
Identity = 202/212 (95.28%), Postives = 202/212 (95.28%), Query Frame = 0


Query: 1   MSLDNHLFGYQENFENFPGKQNSHLSFHFNYLEEMLFADMSLSXXXXXXXXXPCLSPEMH 60
           MSL NHLFGYQENFENFPGKQNSHLSFHFNYLEEMLFADMSLS         PCLSPEMH
Sbjct: 1   MSLHNHLFGYQENFENFPGKQNSHLSFHFNYLEEMLFADMSLS--SSSSDSSPCLSPEMH 60

Query: 61  VKEEIEDGDIIVQDAQTQKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAA 120
           VKEEIEDGDIIVQDAQTQKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAA
Sbjct: 61  VKEEIEDGDIIVQDAQTQKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAA 120

Query: 121 ALAYDQAAFCMRGALATLNFPVEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKKMAEA 180
           ALAYDQAAFCMRGALATLNFPVEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKKMAEA
Sbjct: 121 ALAYDQAAFCMRGALATLNFPVEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKKMAEA 180

Query: 181 EKMEXXXXXXXNVVVFEDLGVEYLEELLSLTS 213
           EKMEXXXXXXXNVVVFEDLGVEYLEELLSLTS
Sbjct: 181 EKMEXXXXXXXNVVVFEDLGVEYLEELLSLTS 210

[Close]

BLAST of Carg05117 vs. NCBI nr
Match: XP_023514563.1 (ethylene-responsive transcription factor 1B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.9 bits (964), Expect = 8.8e-101
Identity = 206/212 (97.17%), Postives = 209/212 (98.58%), Query Frame = 0


Query: 1   MSLDNHLFGYQENFENFPGKQNSHLSFHFNYLEEMLFADMSLSXXXXXXXXXPCLSPEMH 60
           MSL NHLFGYQENFENFPGKQNSHLSFHFNYLEEMLFADMSLSXXXXXXXXXPCLSPEMH
Sbjct: 1   MSLHNHLFGYQENFENFPGKQNSHLSFHFNYLEEMLFADMSLSXXXXXXXXXPCLSPEMH 60

Query: 61  VKEEIEDGDIIVQDAQTQKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAA 120
           VKEEIEDGDI+VQ+ +T KEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAA
Sbjct: 61  VKEEIEDGDIVVQEDRTPKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAA 120

Query: 121 ALAYDQAAFCMRGALATLNFPVEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKKMAEA 180
           ALAYDQAAFCMRGALATLNFPVEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKKMAEA
Sbjct: 121 ALAYDQAAFCMRGALATLNFPVEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKKMAEA 180

Query: 181 EKMEXXXXXXXNVVVFEDLGVEYLEELLSLTS 213
           EKMEXXXXXXXNVVVFEDLGVEYLEELLSLTS
Sbjct: 181 EKMEXXXXXXXNVVVFEDLGVEYLEELLSLTS 212

[Close]

BLAST of Carg05117 vs. NCBI nr
Match: XP_023004364.1 (ethylene-responsive transcription factor 1B-like [Cucurbita maxima])

HSP 1 Score: 359.4 bits (921), Expect = 8.5e-96
Identity = 191/212 (90.09%), Postives = 195/212 (91.98%), Query Frame = 0


Query: 1   MSLDNHLFGYQENFENFPGKQNSHLSFHFNYLEEMLFADMSLSXXXXXXXXXPCLSPEMH 60
           MSLDNHLFGYQENF  FPGK+NSHLSF FNYLEEMLFADMS   XXXXXXX PCLSPEMH
Sbjct: 1   MSLDNHLFGYQENFRTFPGKENSHLSFDFNYLEEMLFADMSSLSXXXXXXXSPCLSPEMH 60

Query: 61  VKEEIEDGDIIVQDAQTQKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAA 120
           VKEEIEDGDI+VQD +T KEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAA
Sbjct: 61  VKEEIEDGDIVVQDDRTPKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAA 120

Query: 121 ALAYDQAAFCMRGALATLNFPVEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKKMAEA 180
           ALAYDQAAFCMRGALATLNFP EVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKK+AEA
Sbjct: 121 ALAYDQAAFCMRGALATLNFPAEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKKIAEA 180

Query: 181 EKMEXXXXXXXNVVVFEDLGVEYLEELLSLTS 213
           EKME       NVVVFEDLGVEYLEELLSLTS
Sbjct: 181 EKME-KKMKKKNVVVFEDLGVEYLEELLSLTS 211

[Close]

BLAST of Carg05117 vs. NCBI nr
Match: XP_004148976.1 (PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis sativus] >KGN44740.1 hypothetical protein Csa_7G375820 [Cucumis sativus])

HSP 1 Score: 248.8 bits (634), Expect = 1.6e-62
Identity = 153/231 (66.23%), Postives = 170/231 (73.59%), Query Frame = 0


Query: 1   MSLDNHLFG-YQENF-----ENFPGKQNSHLSFHFNYLEEMLFADMSLS-XXXXXXXXXP 60
           MS+ +  FG YQENF      N         SF FNYL +MLF DM  +           
Sbjct: 1   MSILSDFFGNYQENFLWNNDHNQSFISGEETSFDFNYLNDMLFDDMVFAEETMSSSDSSS 60

Query: 61  CLSP-EMHVKE-----EIEDG----DIIVQDAQTQKEERAYRGVRRRPWGKYAAEIRDST 120
           C SP E+ VKE     E+E+G    +++V++ Q+ KEER YRGVRRRPWGKYAAEIRDST
Sbjct: 61  CSSPIELQVKEEVVEVEVEEGSVCDEVVVEEDQSHKEERVYRGVRRRPWGKYAAEIRDST 120

Query: 121 RQGVRVWLGTFDSAEAAALAYDQAAFCMRGALATLNFPVEVVRESLYEMKYRWEVGCSPV 180
           RQGVRVWLGTFDSAEAAALAYDQAAFCMRG LATLNFP+EVVRESL EMKYRWEVG SPV
Sbjct: 121 RQGVRVWLGTFDSAEAAALAYDQAAFCMRGGLATLNFPIEVVRESLREMKYRWEVGSSPV 180

Query: 181 LALKRRHTIRRKKMAEAEKM--EXXXXXXXNVVVFEDLGVEYLEELLSLTS 213
           LALKRRH+I+RK+MAE EKM   XXXXXXX    FEDLGVEYLEELLSLTS
Sbjct: 181 LALKRRHSIQRKRMAEVEKMXXXXXXXXXXXXXXFEDLGVEYLEELLSLTS 231

[Close]

BLAST of Carg05117 vs. NCBI nr
Match: XP_008451254.1 (PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis melo])

HSP 1 Score: 233.8 bits (595), Expect = 5.4e-58
Identity = 157/237 (66.24%), Postives = 175/237 (73.84%), Query Frame = 0


Query: 1   MSLDNHLFG-YQENF--------ENFPGKQNSHLSFHFNYLEEMLFADM---------SL 60
           MS+ + LFG YQENF            G++ S  SF FNYL +MLF DM           
Sbjct: 1   MSIVSDLFGNYQENFLWNNDHCGSLISGQEES--SFDFNYLNKMLFDDMVSVAXXXXXXX 60

Query: 61  SXXXXXXXXXPCLSPEMHVKEEIEDG----DIIVQDAQTQKEERAYRGVRRRPWGKYAAE 120
            XXXXXXXXX        V+ E+++G    D++V++ Q+ KEER YRGVRRRPWGKYAAE
Sbjct: 61  XXXXXXXXXXXXXXXXXVVEVEVDEGSFSEDVVVEEDQSHKEERVYRGVRRRPWGKYAAE 120

Query: 121 IRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGALATLNFPVEVVRESLYEMKYRWEV 180
           IRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRG LATLNFP+EVVRESL EMKYR EV
Sbjct: 121 IRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGGLATLNFPIEVVRESLREMKYRREV 180

Query: 181 GCSPVLALKRRHTIRRKKMAEAEKM---EXXXXXXXNVVVFEDLGVEYLEELLSLTS 213
           G SPVLALKRRH+I+RK+MAE EKM    XXXXXXX    FEDLGVEYLEELLSLTS
Sbjct: 181 GSSPVLALKRRHSIQRKRMAEVEKMXXXXXXXXXXXXXXXFEDLGVEYLEELLSLTS 235

[Close]

BLAST of Carg05117 vs. TAIR10
Match: AT3G23240.1 (ethylene response factor 1)

HSP 1 Score: 174.1 bits (440), Expect = 9.2e-44
Identity = 88/143 (61.54%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 69  DIIVQDAQTQKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAA 128
           D+ ++   ++K E++YRGVRRRPWGK+AAEIRDSTR G+RVWLGTF+SAE AALAYDQAA
Sbjct: 67  DLPIKSVSSRKSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAA 126

Query: 129 FCMRGALATLNFPVEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRK---KMAEAEKMEX 188
           F MRG+ A LNF  E V+ESL E+KY +E GCSPV+ALKR+H++RR+   K  +    + 
Sbjct: 127 FSMRGSSAILNFSAERVQESLSEIKYTYEDGCSPVVALKRKHSMRRRMTNKKTKDSDFDH 186

Query: 189 XXXXXXNVVVFEDLGVEYLEELL 209
                 NVVVFEDLG +YLEELL
Sbjct: 187 RSVKLDNVVVFEDLGEQYLEELL 209

[Close]

BLAST of Carg05117 vs. TAIR10
Match: AT2G31230.1 (ethylene-responsive element binding factor 15)

HSP 1 Score: 161.0 bits (406), Expect = 8.1e-40
Identity = 95/185 (51.35%), Postives = 117/185 (63.24%), Query Frame = 0


Query: 56  SPEMHVKEEIEDGDIIVQDAQTQ---KEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLG 115
           SPEM +KEEI++GD+   + + +    EER+YRGVR+RPWGK+AAEIRDSTR G+RVWLG
Sbjct: 55  SPEMMIKEEIQNGDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLG 114

Query: 116 TFDSAEAAALAYDQAAFCMRGALATLNFPVEVVRESLYEMK-YRWEVGCSPVLALKRRHT 175
           TFD AE AALAYDQAAF  +G+LATLNFPVEVVRESL +M+      G SPV+ALKR+H+
Sbjct: 115 TFDKAEEAALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHS 174

Query: 176 IRRKKMA----------------------------EAEKMEXXXXXXXNVVVFEDLGVEY 209
           +R +                                     XX      +VVFEDLG EY
Sbjct: 175 LRNRPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQESGTLVVFEDLGAEY 234

[Close]

BLAST of Carg05117 vs. TAIR10
Match: AT1G06160.1 (octadecanoid-responsive Arabidopsis AP2/ERF 59)

HSP 1 Score: 137.9 bits (346), Expect = 7.3e-33
Identity = 88/182 (48.35%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 61  VKEEIEDGDIIVQDAQTQKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAA 120
           +KEE ++  +  ++     EE++YRGVR+RPWGK+AAEIRDSTR+G+RVWLGTFD+AEAA
Sbjct: 64  IKEEGKEATVAAEE-----EEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAA 123

Query: 121 ALAYDQAAFCMRGALATLNFPVEVVRESLYEMK-YRWEVGCSPVLALKRRHTIRRK---- 180
           ALAYDQAAF ++G+LA LNFP +VV ESL +M+      G SPV+ALKR+H++R +    
Sbjct: 124 ALAYDQAAFALKGSLAVLNFPADVVEESLRKMENVNLNDGESPVIALKRKHSMRNRXXXX 183

Query: 181 -----------------------------KMAEAEKMEXXXXXXXNVVVFEDLGVEYLEE 209
                                                 XXXXXXX +VV EDLG EYLEE
Sbjct: 184 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVVLEDLGAEYLEE 240

[Close]

BLAST of Carg05117 vs. TAIR10
Match: AT5G43410.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 98.6 bits (244), Expect = 4.9e-21
Identity = 48/64 (75.00%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 80  EERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGALATLN 139
           E   YRGVRRRPWGKYAAEIRDS + G RVWLGTFD+AE AA AYDQAA+ MRG  A LN
Sbjct: 11  EHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILN 70

Query: 140 FPVE 144
           FP E
Sbjct: 71  FPHE 74

[Close]

BLAST of Carg05117 vs. TAIR10
Match: AT5G61600.1 (ethylene response factor 104)

HSP 1 Score: 97.8 bits (242), Expect = 8.4e-21
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 76  QTQKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGAL 135
           + ++EER YRGVRRRPWGKYAAEIRD  ++G R+WLGT+D+A  A  AYDQAAF +RG  
Sbjct: 80  EKEEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRK 139

Query: 136 ATLNFPVEV 145
           A LNFP++V
Sbjct: 140 AILNFPLDV 148

[Close]

BLAST of Carg05117 vs. Swiss-Prot
Match: sp|Q8LDC8|ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana OX=3702 GN=ERF1B PE=1 SV=2)

HSP 1 Score: 174.1 bits (440), Expect = 1.7e-42
Identity = 88/143 (61.54%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 69  DIIVQDAQTQKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAA 128
           D+ ++   ++K E++YRGVRRRPWGK+AAEIRDSTR G+RVWLGTF+SAE AALAYDQAA
Sbjct: 67  DLPIKSVSSRKSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAA 126

Query: 129 FCMRGALATLNFPVEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRK---KMAEAEKMEX 188
           F MRG+ A LNF  E V+ESL E+KY +E GCSPV+ALKR+H++RR+   K  +    + 
Sbjct: 127 FSMRGSSAILNFSAERVQESLSEIKYTYEDGCSPVVALKRKHSMRRRMTNKKTKDSDFDH 186

Query: 189 XXXXXXNVVVFEDLGVEYLEELL 209
                 NVVVFEDLG +YLEELL
Sbjct: 187 RSVKLDNVVVFEDLGEQYLEELL 209

[Close]

BLAST of Carg05117 vs. Swiss-Prot
Match: sp|Q8VYM0|ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=ERF15 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.5e-38
Identity = 95/185 (51.35%), Postives = 117/185 (63.24%), Query Frame = 0


Query: 56  SPEMHVKEEIEDGDIIVQDAQTQ---KEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLG 115
           SPEM +KEEI++GD+   + + +    EER+YRGVR+RPWGK+AAEIRDSTR G+RVWLG
Sbjct: 55  SPEMMIKEEIQNGDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLG 114

Query: 116 TFDSAEAAALAYDQAAFCMRGALATLNFPVEVVRESLYEMK-YRWEVGCSPVLALKRRHT 175
           TFD AE AALAYDQAAF  +G+LATLNFPVEVVRESL +M+      G SPV+ALKR+H+
Sbjct: 115 TFDKAEEAALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHS 174

Query: 176 IRRKKMA----------------------------EAEKMEXXXXXXXNVVVFEDLGVEY 209
           +R +                                     XX      +VVFEDLG EY
Sbjct: 175 LRNRPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQESGTLVVFEDLGAEY 234

[Close]

BLAST of Carg05117 vs. Swiss-Prot
Match: sp|Q9LND1|ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana OX=3702 GN=ERF094 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-31
Identity = 88/182 (48.35%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 61  VKEEIEDGDIIVQDAQTQKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAA 120
           +KEE ++  +  ++     EE++YRGVR+RPWGK+AAEIRDSTR+G+RVWLGTFD+AEAA
Sbjct: 64  IKEEGKEATVAAEE-----EEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAA 123

Query: 121 ALAYDQAAFCMRGALATLNFPVEVVRESLYEMK-YRWEVGCSPVLALKRRHTIRRK---- 180
           ALAYDQAAF ++G+LA LNFP +VV ESL +M+      G SPV+ALKR+H++R +    
Sbjct: 124 ALAYDQAAFALKGSLAVLNFPADVVEESLRKMENVNLNDGESPVIALKRKHSMRNRXXXX 183

Query: 181 -----------------------------KMAEAEKMEXXXXXXXNVVVFEDLGVEYLEE 209
                                                 XXXXXXX +VV EDLG EYLEE
Sbjct: 184 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVVLEDLGAEYLEE 240

[Close]

BLAST of Carg05117 vs. Swiss-Prot
Match: sp|O04681|PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum OX=4081 GN=PTI5 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-22
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 82  RAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGALATLNFP 141
           + YRGVRRRPWGKYAAEIRDS R G RVWLGTF++AE AALAYD+AAF MRGA A LNFP
Sbjct: 57  KKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFP 116

Query: 142 VEVVRESL 150
            E+V  S+
Sbjct: 117 SEIVNASV 124

[Close]

BLAST of Carg05117 vs. Swiss-Prot
Match: sp|Q9LSX0|ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana OX=3702 GN=ERF096 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.9e-20
Identity = 48/64 (75.00%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 80  EERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGALATLN 139
           E   YRGVRRRPWGKYAAEIRDS + G RVWLGTFD+AE AA AYDQAA+ MRG  A LN
Sbjct: 11  EHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILN 70

Query: 140 FPVE 144
           FP E
Sbjct: 71  FPHE 74

[Close]

BLAST of Carg05117 vs. TrEMBL
Match: tr|A0A0A0K4U4|A0A0A0K4U4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G375820 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.1e-62
Identity = 153/231 (66.23%), Postives = 170/231 (73.59%), Query Frame = 0


Query: 1   MSLDNHLFG-YQENF-----ENFPGKQNSHLSFHFNYLEEMLFADMSLS-XXXXXXXXXP 60
           MS+ +  FG YQENF      N         SF FNYL +MLF DM  +           
Sbjct: 1   MSILSDFFGNYQENFLWNNDHNQSFISGEETSFDFNYLNDMLFDDMVFAEETMSSSDSSS 60

Query: 61  CLSP-EMHVKE-----EIEDG----DIIVQDAQTQKEERAYRGVRRRPWGKYAAEIRDST 120
           C SP E+ VKE     E+E+G    +++V++ Q+ KEER YRGVRRRPWGKYAAEIRDST
Sbjct: 61  CSSPIELQVKEEVVEVEVEEGSVCDEVVVEEDQSHKEERVYRGVRRRPWGKYAAEIRDST 120

Query: 121 RQGVRVWLGTFDSAEAAALAYDQAAFCMRGALATLNFPVEVVRESLYEMKYRWEVGCSPV 180
           RQGVRVWLGTFDSAEAAALAYDQAAFCMRG LATLNFP+EVVRESL EMKYRWEVG SPV
Sbjct: 121 RQGVRVWLGTFDSAEAAALAYDQAAFCMRGGLATLNFPIEVVRESLREMKYRWEVGSSPV 180

Query: 181 LALKRRHTIRRKKMAEAEKM--EXXXXXXXNVVVFEDLGVEYLEELLSLTS 213
           LALKRRH+I+RK+MAE EKM   XXXXXXX    FEDLGVEYLEELLSLTS
Sbjct: 181 LALKRRHSIQRKRMAEVEKMXXXXXXXXXXXXXXFEDLGVEYLEELLSLTS 231

[Close]

BLAST of Carg05117 vs. TrEMBL
Match: tr|A0A1S3BQG1|A0A1S3BQG1_CUCME (ethylene-responsive transcription factor 1B-like OS=Cucumis melo OX=3656 GN=LOC103492600 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.6e-58
Identity = 157/237 (66.24%), Postives = 175/237 (73.84%), Query Frame = 0


Query: 1   MSLDNHLFG-YQENF--------ENFPGKQNSHLSFHFNYLEEMLFADM---------SL 60
           MS+ + LFG YQENF            G++ S  SF FNYL +MLF DM           
Sbjct: 1   MSIVSDLFGNYQENFLWNNDHCGSLISGQEES--SFDFNYLNKMLFDDMVSVAXXXXXXX 60

Query: 61  SXXXXXXXXXPCLSPEMHVKEEIEDG----DIIVQDAQTQKEERAYRGVRRRPWGKYAAE 120
            XXXXXXXXX        V+ E+++G    D++V++ Q+ KEER YRGVRRRPWGKYAAE
Sbjct: 61  XXXXXXXXXXXXXXXXXVVEVEVDEGSFSEDVVVEEDQSHKEERVYRGVRRRPWGKYAAE 120

Query: 121 IRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGALATLNFPVEVVRESLYEMKYRWEV 180
           IRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRG LATLNFP+EVVRESL EMKYR EV
Sbjct: 121 IRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGGLATLNFPIEVVRESLREMKYRREV 180

Query: 181 GCSPVLALKRRHTIRRKKMAEAEKM---EXXXXXXXNVVVFEDLGVEYLEELLSLTS 213
           G SPVLALKRRH+I+RK+MAE EKM    XXXXXXX    FEDLGVEYLEELLSLTS
Sbjct: 181 GSSPVLALKRRHSIQRKRMAEVEKMXXXXXXXXXXXXXXXFEDLGVEYLEELLSLTS 235

[Close]

BLAST of Carg05117 vs. TrEMBL
Match: tr|A0A2N9IRW2|A0A2N9IRW2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54745 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.8e-47
Identity = 105/152 (69.08%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 61  VKEEIEDGDIIVQDAQTQKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAA 120
           VKEE    +   ++A  QK E++YRGVRRRPWGKYAAEIRDSTR G+RVWLGTFDSAEAA
Sbjct: 60  VKEEEVTSNTAKEEACDQK-EKSYRGVRRRPWGKYAAEIRDSTRHGIRVWLGTFDSAEAA 119

Query: 121 ALAYDQAAFCMRGALATLNFPVEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKKMAEA 180
           ALAYDQAAF MRG+LA LNFPVEVVRESL +MKYR E GCSPV+ALKRRH++RRK +   
Sbjct: 120 ALAYDQAAFSMRGSLAVLNFPVEVVRESLQDMKYRCEEGCSPVVALKRRHSMRRKTI--T 179

Query: 181 EKMEXXXXXXXNVVVFEDLGVEYLEELLSLTS 213
            K +       NVVV EDLG +YLEE+LSL+S
Sbjct: 180 RKSKGKEIRPQNVVVLEDLGADYLEEILSLSS 208

[Close]

BLAST of Carg05117 vs. TrEMBL
Match: tr|A0A0C5ACY7|A0A0C5ACY7_BETPL (ERF8 protein OS=Betula platyphylla OX=78630 GN=ERF8 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.5e-45
Identity = 112/206 (54.37%), Postives = 139/206 (67.48%), Query Frame = 0


Query: 7   LFGYQENFENFPGKQNSHLSFHFNYLEEMLFADMSLSXXXXXXXXXPCLSPEMHVKEEIE 66
           L+G   +++      NS L F+ N  EEML  D +L+            SP   V +  E
Sbjct: 18  LYGESLSWDELLFHHNS-LPFNLNDSEEMLLLD-ALAKGSSAKETWESTSPTSCVVKVKE 77

Query: 67  DGDIIVQDAQTQKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQ 126
           +        +  K+E++YRGVRRRPWGKYAAEIRDSTR G+RVWLGTFDSAEAAALAYDQ
Sbjct: 78  EEVTSNPKDKLCKKEKSYRGVRRRPWGKYAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQ 137

Query: 127 AAFCMRGALATLNFPVEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKKMAEAEKME-X 186
           AAF MRG+LA LNFPVEVVR SL +MKYR E GCSPV+ALKR+H++RRK + + +  +  
Sbjct: 138 AAFSMRGSLAVLNFPVEVVRNSLQDMKYRCEDGCSPVVALKRKHSMRRKSLTKKKTTKGK 197

Query: 187 XXXXXXNVVVFEDLGVEYLEELLSLT 212
                 +VVV EDLG +YLEELLSL+
Sbjct: 198 KDSTPESVVVLEDLGADYLEELLSLS 221

[Close]

BLAST of Carg05117 vs. TrEMBL
Match: tr|A0A2C9UTA1|A0A2C9UTA1_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G031700 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.5e-45
Identity = 108/198 (54.55%), Postives = 133/198 (67.17%), Query Frame = 0


Query: 15  ENFPGKQNSHLSFHFNYLEEMLFADMSLSXXXXXXXXXPCLSPEMHVKEEIEDGDIIVQD 74
           E+FP   N  L F  N   +ML  D+               S E +     ++ D+  Q+
Sbjct: 27  ESFPYHSN-FLPFEANDSGDMLLFDVVAQGHQKE-------SSESNSTTATKEEDLTSQE 86

Query: 75  ---AQTQKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCM 134
                T K+E++YRGVR+RPWGKYAAEIRDSTR G+RVWLGTFDSAEAAALAYDQAAF M
Sbjct: 87  EVSVSTIKKEKSYRGVRKRPWGKYAAEIRDSTRNGIRVWLGTFDSAEAAALAYDQAAFSM 146

Query: 135 RGALATLNFPVEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKKMAEAEKMEXXXXXXX 194
           RG++A LNFPVE VR+SL ++KYR E GCSPV+ALKR+H++RRK  ++  K +       
Sbjct: 147 RGSMAILNFPVETVRQSLQDIKYRCEDGCSPVVALKRKHSMRRKSTSKKSKGKELNIKPK 206

Query: 195 NVVVFEDLGVEYLEELLS 210
           NVVV EDLG EYLEELLS
Sbjct: 207 NVVVLEDLGAEYLEELLS 216

The following BLAST results are available for this feature:

BLAST of Carg05117 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959670.1	6.1e-102	95.28	ethylene-responsive transcription factor 1B-like [Cucurbita moschata]	[more]
XP_023514563.1	8.8e-101	97.17	ethylene-responsive transcription factor 1B-like [Cucurbita pepo subsp. pepo]	[more]
XP_023004364.1	8.5e-96	90.09	ethylene-responsive transcription factor 1B-like [Cucurbita maxima]	[more]
XP_004148976.1	1.6e-62	66.23	PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis sativus] >K...	[more]
XP_008451254.1	5.4e-58	66.24	PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis melo]	[more]

BLAST of Carg05117 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23240.1	9.2e-44	61.54	ethylene response factor 1	[more]
AT2G31230.1	8.1e-40	51.35	ethylene-responsive element binding factor 15	[more]
AT1G06160.1	7.3e-33	48.35	octadecanoid-responsive Arabidopsis AP2/ERF 59	[more]
AT5G43410.1	4.9e-21	75.00	Integrase-type DNA-binding superfamily protein	[more]
AT5G61600.1	8.4e-21	65.22	ethylene response factor 104	[more]

BLAST of Carg05117 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LDC8\|ERF92_ARATH	1.7e-42	61.54	Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana OX=3702 GN=E...	[more]
sp\|Q8VYM0\|ERF93_ARATH	1.5e-38	51.35	Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=E...	[more]
sp\|Q9LND1\|ERF94_ARATH	1.3e-31	48.35	Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|O04681\|PTI5_SOLLC	2.5e-22	75.00	Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicu...	[more]
sp\|Q9LSX0\|ERF96_ARATH	8.9e-20	75.00	Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg05117 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K4U4\|A0A0A0K4U4_CUCSA	1.1e-62	66.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G375820 PE=4 SV=1	[more]
tr\|A0A1S3BQG1\|A0A1S3BQG1_CUCME	3.6e-58	66.24	ethylene-responsive transcription factor 1B-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A2N9IRW2\|A0A2N9IRW2_FAGSY	4.8e-47	69.08	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54745 PE=4 SV=1	[more]
tr\|A0A0C5ACY7\|A0A0C5ACY7_BETPL	3.5e-45	54.37	ERF8 protein OS=Betula platyphylla OX=78630 GN=ERF8 PE=2 SV=1	[more]
tr\|A0A2C9UTA1\|A0A2C9UTA1_MANES	4.5e-45	54.55	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G031700 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR036955	AP2/ERF_dom_sf
IPR001471	AP2/ERF_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05117-RA	Carg05117-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 173..193
None	No IPR available	PANTHER	PTHR31190	FAMILY NOT NAMED	coord: 13..212
None	No IPR available	PANTHER	PTHR31190:SF35	SUBFAMILY NOT NAMED	coord: 13..212
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 84..95 score: 71.67 coord: 107..123 score: 65.88
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 83..147 e-value: 1.2E-36 score: 137.7
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 84..133 e-value: 1.6E-13 score: 50.6
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 83..141 score: 22.84
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 84..142 e-value: 3.43035E-20 score: 80.0083
IPR036955	AP2/ERF domain superfamily	GENE3D	G3DSA:3.30.730.10		coord: 82..144 e-value: 1.5E-30 score: 106.8
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	SSF54171	DNA-binding domain	coord: 83..143

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05117	Cla014832	Watermelon (97103) v1	carwmB0079
Carg05117	Csa7G375820	Cucumber (Chinese Long) v2	carcuB0095
Carg05117	MELO3C015737	Melon (DHL92) v3.5.1	carmeB0084
Carg05117	ClCG09G007770	Watermelon (Charleston Gray)	carwcgB0080
Carg05117	CSPI07G15610	Wild cucumber (PI 183967)	carcpiB0099
Carg05117	Cucsa.388530	Cucumber (Gy14) v1	carcgyB0104
Carg05117	CmaCh08G002940	Cucurbita maxima (Rimu)	carcmaB0112
Carg05117	CmoCh08G002920	Cucurbita moschata (Rifu)	carcmoB0119
Carg05117	Lsi02G022150	Bottle gourd (USVL1VR-Ls)	carlsiB074
Carg05117	Cp4.1LG17g06120	Cucurbita pepo (Zucchini)	carcpeB0126
Carg05117	CsGy7G014120	Cucumber (Gy14) v2	carcgybB0095
Carg05117	MELO3C015737.2	Melon (DHL92) v3.6.1	carmedB0085
Carg05117	CsaV3_7G027380	Cucumber (Chinese Long) v3	carcucB0102
Carg05117	Cla97C09G170380	Watermelon (97103) v2	carwmbB0085

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None