Cp4.1LG17g02460 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g02460
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUbiquitin-related modifier 1 homolog
LocationCp4.1LG17 : 2252204 .. 2253100 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCCTGAACATGTGGATGTGGCACCACTCCTTCGAGCCTTTGTTGAGACGAAAACAACAGCTACGTCCATTGTCATGTCTACAAGAAGGAGAAAGAATACCATTGTTGAGATATTATCCAAAGATGGCACTTGTTTGGTCTTGGATAGTGATATAGAGGTCAAATTTATTGTATTTTTTACAGAAAGTTATACACCAAGGGTCGAGGTAGACGTCCTCCAATCATTAGAAATCAGGATTGTCTTTTGTAACTTGTGGCACCCTTTGCCTTTTAGTACATTTCATACTTAAAAGTTACCAGATTCTCATAGAAACAAAGTATGTCATTTGTTAGGTTCATATGATCGACATGACAGTAATATTAATGTTTAAATGCAGTGGGGGATTGGAGTTGCTATGTGACTCTGTGAAGATCCATAATGTCAGCATCAATTCTGAAAATGGAGCGGGAAAGGTAAACTATATTTTCCAATAAGTTAATGAAAGATTCTAGTCGAAAATCGATATCATCAGATTCATATTTTCCTGTTTCTCCTTTCATCTCTCTGTTTATTCGTCTAATGTTTTCGTTTAAAACGCGTCTCAGTTAGTCATGAAAGATTTGCTCTCTTGGGTCCGTTCTAATCTGATCAAGGAGCGGCCAGAAATGTTTATGAAAGGCGACACCGTGTAAGTAAAAGAAACATCTCGTTTATGAAAGCCGAAACTTTTTTGAAGAATTGTGAGTATATTAAGGTTGTATAGCTGACAGTGGCATGGTTTGGAATGTGGTGCAGAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGCGGGCAGCTTGACACAACATTGGAAGAGAAAGACGTGGTTGTGTTCATATCCACCTTGCATGGAGGCTAA

mRNA sequence

ATGGGGCCTGAACATGTGGATGTGGCACCACTCCTTCGAGCCTTTGTTGAGACGAAAACAACAGCTACGTCCATTGTCATGTCTACAAGAAGGAGAAAGAATACCATTGTTGAGATATTATCCAAAGATGGCACTTGTTTGGTCTTGGATAGTGATATAGAGGTTCATATGATCGACATGACAGTAATATTAATGTTTAAATGCAGTGGGGGATTGGAGTTGCTATGTGACTCTGTGAAGATCCATAATGTCAGCATCAATTCTGAAAATGGAGCGGGAAAGTTAGTCATGAAAGATTTGCTCTCTTGGGTCCGTTCTAATCTGATCAAGGAGCGGCCAGAAATGTTTATGAAAGGCGACACCGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGCGGGCAGCTTGACACAACATTGGAAGAGAAAGACGTGGTTGTGTTCATATCCACCTTGCATGGAGGCTAA

Coding sequence (CDS)

ATGGGGCCTGAACATGTGGATGTGGCACCACTCCTTCGAGCCTTTGTTGAGACGAAAACAACAGCTACGTCCATTGTCATGTCTACAAGAAGGAGAAAGAATACCATTGTTGAGATATTATCCAAAGATGGCACTTGTTTGGTCTTGGATAGTGATATAGAGGTTCATATGATCGACATGACAGTAATATTAATGTTTAAATGCAGTGGGGGATTGGAGTTGCTATGTGACTCTGTGAAGATCCATAATGTCAGCATCAATTCTGAAAATGGAGCGGGAAAGTTAGTCATGAAAGATTTGCTCTCTTGGGTCCGTTCTAATCTGATCAAGGAGCGGCCAGAAATGTTTATGAAAGGCGACACCGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGCGGGCAGCTTGACACAACATTGGAAGAGAAAGACGTGGTTGTGTTCATATCCACCTTGCATGGAGGCTAA

Protein sequence

MGPEHVDVAPLLRAFVETKTTATSIVMSTRRRKNTIVEILSKDGTCLVLDSDIEVHMIDMTVILMFKCSGGLELLCDSVKIHNVSINSENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Homology
[Close]
BLAST of Cp4.1LG17g02460 vs. Swiss-Prot
Match: URM12_ARATH (Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana GN=URM1-2 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-40
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 1 

Query: 70  GGLELLCDSVKIHNVSINSENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVL 129
           GGLELLCDSVKIH V+IN  N +  L MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVL
Sbjct: 9   GGLELLCDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVL 68

Query: 130 VNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           VNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Sbjct: 69  VNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99

[Close]
BLAST of Cp4.1LG17g02460 vs. Swiss-Prot
Match: URM11_ARATH (Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana GN=URM1-1 PE=3 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-37
Identity = 76/99 (76.77%), Postives = 83/99 (83.84%), Query Frame = 1 

Query: 64  LMFKCSGGLELLCDSVKIHNVSINSENGAGK--LVMKDLLSWVRSNLIKERPEMFMKGDT 123
           L  +  GGLELLCDS KIH V+++  NGA      MK LLSWVR+NLIKERPEMFMKGDT
Sbjct: 3   LTLEFGGGLELLCDSEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDT 62

Query: 124 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           VRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Sbjct: 63  VRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101

[Close]
BLAST of Cp4.1LG17g02460 vs. Swiss-Prot
Match: URM1_ORYSJ (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica GN=URM1 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.7e-34
Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = 1 

Query: 64  LMFKCSGGLELLCD-SVKIHNVSINSENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTV 123
           L  +  GGLELL + S K+H V +   +G GK+VMK LL+WV+SNLIKERPEMF+KGD+V
Sbjct: 3   LTLEFGGGLELLLEKSTKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSV 62

Query: 124 RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           RPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  RPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100

[Close]
BLAST of Cp4.1LG17g02460 vs. Swiss-Prot
Match: URM1_ORYSI (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica GN=URM1 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.7e-34
Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = 1 

Query: 64  LMFKCSGGLELLCD-SVKIHNVSINSENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTV 123
           L  +  GGLELL + S K+H V +   +G GK+VMK LL+WV+SNLIKERPEMF+KGD+V
Sbjct: 3   LTLEFGGGLELLLEKSTKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSV 62

Query: 124 RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           RPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  RPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100

[Close]
BLAST of Cp4.1LG17g02460 vs. Swiss-Prot
Match: URM1_MAIZE (Ubiquitin-related modifier 1 homolog OS=Zea mays GN=URM1 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 9.8e-32
Identity = 67/99 (67.68%), Postives = 79/99 (79.80%), Query Frame = 1 

Query: 64  LMFKCSGGLELLCD-SVKIHNVSINS-ENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDT 123
           L  +  GGLELL + S K+H V + + ++G GK+ MK LLSWV+ NLIKERPEMF+K D+
Sbjct: 3   LTLEFGGGLELLLENSTKVHKVEVTTPKDGQGKVTMKFLLSWVKENLIKERPEMFLKADS 62

Query: 124 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  VRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 101

[Close]
BLAST of Cp4.1LG17g02460 vs. TrEMBL
Match: A0A0A0KCT7_CUCSA (Ubiquitin-related modifier 1 homolog OS=Cucumis sativus GN=Csa_6G075130 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 8.9e-48
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 1 

Query: 58  IDMTVILMFKCSGGLELLCDSVKIHNVSINSENGAGKLVMKDLLSWVRSNLIKERPEMFM 117
           +DMT+IL FKCSGGLELLC+SVKIHNVSI+ ENG GK +MKDLLSWVRSNLIKERPEMFM
Sbjct: 1   MDMTLILDFKCSGGLELLCNSVKIHNVSIDPENGVGKFIMKDLLSWVRSNLIKERPEMFM 60

Query: 118 KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 103

[Close]
BLAST of Cp4.1LG17g02460 vs. TrEMBL
Match: A0A0L9VR89_PHAAN (Ubiquitin-related modifier 1 (Fragment) OS=Phaseolus angularis GN=LR48_Vigan11g042500 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.6e-41
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 1 

Query: 69  SGGLELLCDSVKIHNVSINSENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLV 128
           SGGLELLCDS KIHNV+I   NG GKL+MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLV
Sbjct: 6   SGGLELLCDSKKIHNVNIEQHNGEGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLV 65

Query: 129 LVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           LVNDCDWELSGQLDT+LEEKDVVVFISTLHGG
Sbjct: 66  LVNDCDWELSGQLDTSLEEKDVVVFISTLHGG 97

[Close]
BLAST of Cp4.1LG17g02460 vs. TrEMBL
Match: A0A0S3SXY8_PHAAN (Ubiquitin-related modifier 1 homolog OS=Vigna angularis var. angularis GN=Vigan.09G141900 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.8e-41
Identity = 83/97 (85.57%), Postives = 88/97 (90.72%), Query Frame = 1 

Query: 64  LMFKCSGGLELLCDSVKIHNVSINSENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVR 123
           L  +  GGLELLCDS KIHNV+I   NG GKL+MKDLLSWVR+NLIKERPEMFMKGDTVR
Sbjct: 3   LTLEFGGGLELLCDSKKIHNVNIEQHNGEGKLIMKDLLSWVRTNLIKERPEMFMKGDTVR 62

Query: 124 PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           PGVLVLVNDCDWELSGQLDT+LEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTSLEEKDVVVFISTLHGG 99

[Close]
BLAST of Cp4.1LG17g02460 vs. TrEMBL
Match: B9RDI8_RICCO (Ubiquitin-related modifier 1 homolog OS=Ricinus communis GN=RCOM_1613470 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.2e-41
Identity = 81/97 (83.51%), Postives = 90/97 (92.78%), Query Frame = 1 

Query: 64  LMFKCSGGLELLCDSVKIHNVSINSENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVR 123
           L  +  GGLELLCDSVKIHN++++ +NGA KL MKDLL+WVR+NLIKERPEMFMKGD+VR
Sbjct: 3   LTLEFGGGLELLCDSVKIHNINVDPKNGADKLTMKDLLAWVRNNLIKERPEMFMKGDSVR 62

Query: 124 PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]
BLAST of Cp4.1LG17g02460 vs. TrEMBL
Match: A0A067KAA2_JATCU (Ubiquitin-related modifier 1 homolog OS=Jatropha curcas GN=JCGZ_14475 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.1e-40
Identity = 80/97 (82.47%), Postives = 90/97 (92.78%), Query Frame = 1 

Query: 64  LMFKCSGGLELLCDSVKIHNVSINSENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVR 123
           L  +  GGLELLC+SVKIHNV++ S+NGA KL MKDLL+WVR+NLIKERPEMFMKGD+VR
Sbjct: 3   LTLEFGGGLELLCNSVKIHNVNVESKNGAEKLTMKDLLAWVRTNLIKERPEMFMKGDSVR 62

Query: 124 PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           PGVLVLVNDCDWELSGQL+TTLEEKDV+VFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLETTLEEKDVIVFISTLHGG 99

[Close]
BLAST of Cp4.1LG17g02460 vs. TAIR10
Match: AT3G61113.1 (AT3G61113.1 Ubiquitin related modifier 1)

HSP 1 Score: 167.2 bits (422), Expect = 8.5e-42
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 1 

Query: 70  GGLELLCDSVKIHNVSINSENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVL 129
           GGLELLCDSVKIH V+IN  N +  L MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVL
Sbjct: 9   GGLELLCDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVL 68

Query: 130 VNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           VNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Sbjct: 69  VNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99

[Close]
BLAST of Cp4.1LG17g02460 vs. TAIR10
Match: AT2G45695.1 (AT2G45695.1 Ubiquitin related modifier 1)

HSP 1 Score: 157.5 bits (397), Expect = 6.7e-39
Identity = 76/99 (76.77%), Postives = 83/99 (83.84%), Query Frame = 1 

Query: 64  LMFKCSGGLELLCDSVKIHNVSINSENGAGK--LVMKDLLSWVRSNLIKERPEMFMKGDT 123
           L  +  GGLELLCDS KIH V+++  NGA      MK LLSWVR+NLIKERPEMFMKGDT
Sbjct: 3   LTLEFGGGLELLCDSEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDT 62

Query: 124 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           VRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Sbjct: 63  VRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101

[Close]
BLAST of Cp4.1LG17g02460 vs. NCBI nr
Match: gi|700191008|gb|KGN46212.1| (hypothetical protein Csa_6G075130 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 1.3e-47
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 1 

Query: 58  IDMTVILMFKCSGGLELLCDSVKIHNVSINSENGAGKLVMKDLLSWVRSNLIKERPEMFM 117
           +DMT+IL FKCSGGLELLC+SVKIHNVSI+ ENG GK +MKDLLSWVRSNLIKERPEMFM
Sbjct: 1   MDMTLILDFKCSGGLELLCNSVKIHNVSIDPENGVGKFIMKDLLSWVRSNLIKERPEMFM 60

Query: 118 KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 103

[Close]
BLAST of Cp4.1LG17g02460 vs. NCBI nr
Match: gi|659120361|ref|XP_008460154.1| (PREDICTED: ubiquitin-related modifier 1 homolog 2 [Cucumis melo])

HSP 1 Score: 181.8 bits (460), Expect = 9.4e-43
Identity = 86/97 (88.66%), Postives = 91/97 (93.81%), Query Frame = 1 

Query: 64  LMFKCSGGLELLCDSVKIHNVSINSENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVR 123
           L  +  GGLELLC+SVKIHNVSI+ ENG GKL+MKDLLSWVR+NLIKERPEMFMKGDTVR
Sbjct: 3   LTLEFGGGLELLCNSVKIHNVSIDPENGVGKLIMKDLLSWVRANLIKERPEMFMKGDTVR 62

Query: 124 PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]
BLAST of Cp4.1LG17g02460 vs. NCBI nr
Match: gi|449454498|ref|XP_004144991.1| (PREDICTED: ubiquitin-related modifier 1 homolog 2 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 1.2e-42
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 1 

Query: 64  LMFKCSGGLELLCDSVKIHNVSINSENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVR 123
           L  +  GGLELLC+SVKIHNVSI+ ENG GK +MKDLLSWVRSNLIKERPEMFMKGDTVR
Sbjct: 3   LTLEFGGGLELLCNSVKIHNVSIDPENGVGKFIMKDLLSWVRSNLIKERPEMFMKGDTVR 62

Query: 124 PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]
BLAST of Cp4.1LG17g02460 vs. NCBI nr
Match: gi|920718195|gb|KOM57392.1| (hypothetical protein LR48_Vigan11g042500, partial [Vigna angularis])

HSP 1 Score: 177.2 bits (448), Expect = 2.3e-41
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 1 

Query: 69  SGGLELLCDSVKIHNVSINSENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLV 128
           SGGLELLCDS KIHNV+I   NG GKL+MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLV
Sbjct: 6   SGGLELLCDSKKIHNVNIEQHNGEGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLV 65

Query: 129 LVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           LVNDCDWELSGQLDT+LEEKDVVVFISTLHGG
Sbjct: 66  LVNDCDWELSGQLDTSLEEKDVVVFISTLHGG 97

[Close]
BLAST of Cp4.1LG17g02460 vs. NCBI nr
Match: gi|965611711|dbj|BAT97850.1| (hypothetical protein VIGAN_09141900 [Vigna angularis var. angularis])

HSP 1 Score: 176.4 bits (446), Expect = 4.0e-41
Identity = 83/97 (85.57%), Postives = 88/97 (90.72%), Query Frame = 1 

Query: 64  LMFKCSGGLELLCDSVKIHNVSINSENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVR 123
           L  +  GGLELLCDS KIHNV+I   NG GKL+MKDLLSWVR+NLIKERPEMFMKGDTVR
Sbjct: 3   LTLEFGGGLELLCDSKKIHNVNIEQHNGEGKLIMKDLLSWVRTNLIKERPEMFMKGDTVR 62

Query: 124 PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 161
           PGVLVLVNDCDWELSGQLDT+LEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTSLEEKDVVVFISTLHGG 99

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g02460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
URM12_ARATH1.5e-4086.81Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana GN=URM1-2 PE=3 SV... [more]
URM11_ARATH1.2e-3776.77Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana GN=URM1-1 PE=3 SV... [more]
URM1_ORYSJ4.7e-3470.41Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica GN=URM1 PE=... [more]
URM1_ORYSI4.7e-3470.41Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica GN=URM1 PE=3 ... [more]
URM1_MAIZE9.8e-3267.68Ubiquitin-related modifier 1 homolog OS=Zea mays GN=URM1 PE=3 SV=1[more]
BLAST of Cp4.1LG17g02460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCT7_CUCSA8.9e-4891.26Ubiquitin-related modifier 1 homolog OS=Cucumis sativus GN=Csa_6G075130 PE=3 SV=... [more]
A0A0L9VR89_PHAAN1.6e-4190.22Ubiquitin-related modifier 1 (Fragment) OS=Phaseolus angularis GN=LR48_Vigan11g0... [more]
A0A0S3SXY8_PHAAN2.8e-4185.57Ubiquitin-related modifier 1 homolog OS=Vigna angularis var. angularis GN=Vigan.... [more]
B9RDI8_RICCO6.2e-4183.51Ubiquitin-related modifier 1 homolog OS=Ricinus communis GN=RCOM_1613470 PE=3 SV... [more]
A0A067KAA2_JATCU3.1e-4082.47Ubiquitin-related modifier 1 homolog OS=Jatropha curcas GN=JCGZ_14475 PE=3 SV=1[more]
BLAST of Cp4.1LG17g02460 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61113.18.5e-4286.81 Ubiquitin related modifier 1[more]
AT2G45695.16.7e-3976.77 Ubiquitin related modifier 1[more]
BLAST of Cp4.1LG17g02460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191008|gb|KGN46212.1|1.3e-4791.26hypothetical protein Csa_6G075130 [Cucumis sativus][more]
gi|659120361|ref|XP_008460154.1|9.4e-4388.66PREDICTED: ubiquitin-related modifier 1 homolog 2 [Cucumis melo][more]
gi|449454498|ref|XP_004144991.1|1.2e-4288.66PREDICTED: ubiquitin-related modifier 1 homolog 2 [Cucumis sativus][more]
gi|920718195|gb|KOM57392.1|2.3e-4190.22hypothetical protein LR48_Vigan11g042500, partial [Vigna angularis][more]
gi|965611711|dbj|BAT97850.1|4.0e-4185.57hypothetical protein VIGAN_09141900 [Vigna angularis var. angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0034227tRNA thio-modification
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR016155Mopterin_synth/thiamin_S_b
IPR015221Urm1
IPR012675Beta-grasp_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032447 protein urmylation
biological_process GO:0034227 tRNA thio-modification
biological_process GO:0002098 tRNA wobble uridine modification
cellular_component GO:0005829 cytosol
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g02460.1Cp4.1LG17g02460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012675Beta-grasp domainGENE3DG3DSA:3.10.20.30coord: 65..160
score: 4.3
IPR015221Ubiquitin-related modifier 1HAMAPMF_03048Urm1coord: 60..160
score:
IPR015221Ubiquitin-related modifier 1PFAMPF09138Urm1coord: 66..160
score: 2.7
IPR016155Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-graspunknownSSF54285MoaD/ThiScoord: 65..160
score: 3.71
NoneNo IPR availablePANTHERPTHR14986RURM1 PROTEINcoord: 57..160
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g02460Cucsa.363050Cucumber (Gy14) v1cgycpeB0954
Cp4.1LG17g02460CmaCh17G000060Cucurbita maxima (Rimu)cmacpeB383
Cp4.1LG17g02460CmaCh08G009360Cucurbita maxima (Rimu)cmacpeB916
Cp4.1LG17g02460CmoCh08G009050Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g02460CmoCh17G000080Cucurbita moschata (Rifu)cmocpeB346
Cp4.1LG17g02460Cla006937Watermelon (97103) v1cpewmB342
Cp4.1LG17g02460Csa6G075130Cucumber (Chinese Long) v2cpecuB323
Cp4.1LG17g02460MELO3C022522Melon (DHL92) v3.5.1cpemeB286
Cp4.1LG17g02460ClCG06G000160Watermelon (Charleston Gray)cpewcgB300
Cp4.1LG17g02460CSPI06G05590Wild cucumber (PI 183967)cpecpiB324
Cp4.1LG17g02460Lsi09G019250Bottle gourd (USVL1VR-Ls)cpelsiB250
Cp4.1LG17g02460MELO3C022522.2Melon (DHL92) v3.6.1cpemedB334
Cp4.1LG17g02460CsaV3_6G005910Cucumber (Chinese Long) v3cpecucB0405
Cp4.1LG17g02460BhiUN123G59Wax gourdcpewgoB0428
Cp4.1LG17g02460CsGy6G005530Cucumber (Gy14) v2cgybcpeB785
Cp4.1LG17g02460Carg11103Silver-seed gourdcarcpeB1503
Cp4.1LG17g02460Carg10225Silver-seed gourdcarcpeB0326
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG17g02460Cp4.1LG12g00050Cucurbita pepo (Zucchini)cpecpeB164
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g02460Cucumber (Gy14) v2cgybcpeB357
Cp4.1LG17g02460Melon (DHL92) v3.6.1cpemedB370
Cp4.1LG17g02460Melon (DHL92) v3.6.1cpemedB372
Cp4.1LG17g02460Silver-seed gourdcarcpeB0323
Cp4.1LG17g02460Silver-seed gourdcarcpeB0883
Cp4.1LG17g02460Cucumber (Chinese Long) v3cpecucB0384
Cp4.1LG17g02460Cucumber (Chinese Long) v3cpecucB0389
Cp4.1LG17g02460Wax gourdcpewgoB0403
Cp4.1LG17g02460Cucurbita pepo (Zucchini)cpecpeB232
Cp4.1LG17g02460Cucumber (Gy14) v1cgycpeB0677
Cp4.1LG17g02460Cucurbita maxima (Rimu)cmacpeB825
Cp4.1LG17g02460Cucurbita moschata (Rifu)cmocpeB357
Cp4.1LG17g02460Cucurbita moschata (Rifu)cmocpeB778
Cp4.1LG17g02460Wild cucumber (PI 183967)cpecpiB315
Cp4.1LG17g02460Cucumber (Chinese Long) v2cpecuB313
Cp4.1LG17g02460Bottle gourd (USVL1VR-Ls)cpelsiB271
Cp4.1LG17g02460Watermelon (97103) v1cpewmB332
Cp4.1LG17g02460Melon (DHL92) v3.5.1cpemeB317