CmaCh17G000060 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G000060
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUbiquitin-related modifier 1 homolog
LocationCma_Chr17 : 31411 .. 33072 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACTAAAATTTGGTTCAACCCGAATTGAATAGTTTGTATCATACGGTGAGACTGAAGTTACTTCTAAAATTCCCCCATTAAGGATCTGATCTTTGTCTTCTCTCTAGGGTTTTATTTTAGGGTTCCGCGGAAGCAAATTGAGAATGCAACTCACACTTGAATTTGGGTAATTCTCTCTCTCTCTCTCTTTCTCAAATTTTACTTGGAAGGAAAATTCCCCAGTTTGTTTAGAGAGATACAGGGGAAAAATTTCTGATCCTGGAACACAGAGTTTCAATTCCTTCTGTTTCTGGGAAAGTTGGAAATCAGAAGAAATATCTTGTTCGATCGTGTTTTTATGTTTTTTCGCAGCTTATAAACTTGAATTTCTGTGTCGTTGTCTATCCATAAAGATCGATTGTTTTCTGAATTTGAGCAAACTCTTGAGTTCGTGAATTCTGTGTATTAATGAGGTATCGTGATACTGATGTTGGGGAATATTTCTCTTGGGCTGGCTGAAGGGAAGAAAAGATCGACTATTGGATATAATTGTTTGTGTTTAGTTGTCAATCATTCAAAATTTGCACCTATTCTTCGGGATATTGGGGCCAAAACTATAGTTTTGCTTGAATATCCAGTTGCTTCACTGCCTCCATATTGTTTTCATTCTGGTTTTGTTCGTTCGATTACCATTGTTTTTTAAGCATATGCCAGTTTGTAAATTACACTCCGTTCTTTCGTTAGATTATATATACATTGGAAATCGATAACCTGTTCTTTATCATATTCAACTTTTATGTGTTCAGTGGAACTTTTTGGCTGGATTGTACCATTTATAATTGCATATATTGTTTCAACAATTCATCAGTGTGTTGTTTACAGTGATTGCAGATTTTGACTCCATCAGTACCCTCTATTTCCTCATCCCCACCAAAACCAAAAGAGAAGGAAAATAAATAATGTGGCAGGATCTTTAATAGCCTATTGTCTGCAATATTAGAAATTATCCTTCCATATGCTTCTAGGTTGCATTTTTATTGTGTCTTTTATGAATGTAAAAGGTGGAACGGAAAAGATATCAATGTAGTATGTCATTCTTTAGGCTTTAATTTTTCAGCTAGTGTTTATATGTTAAACATGACAGTAATATTAACTATTACATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGTGAAGATCCACGATGTCAGCGTTGATCCTGAAAATGGAGCGGGAACGGTAAATTAAAATTTTTCAACAATTTAATGAAAGATCGAGTCAATATCAGATTCATATTTTCGTGCTTCATTCCTCTGTTTATCAAGCAAGTCTAATGTTTCTTTTAAAACGGTTCTCAGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGAAGTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACTGTGTAAGTTGTAAAAGAAACATCTCATTAGTTTATCAATTTTCTTTTTCAAAGATTGTGAATGAGAGGATGAACGTGAAAGTGGGTGAAGAATTGTGATGGTTTCAAATGTGGTTCCTGCAGAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGTGGGCAGCTTGATACACCATTGGAAGAGAAAGACGTGGTGGTGTTCATATCCACCCTGCATGGAGGCTAA

mRNA sequence

AAACTAAAATTTGGTTCAACCCGAATTGAATAGTTTGTATCATACGGTGAGACTGAAGTTACTTCTAAAATTCCCCCATTAAGGATCTGATCTTTGTCTTCTCTCTAGGGTTTTATTTTAGGGTTCCGCGGAAGCAAATTGAGAATGCAACTCACACTTGAATTTGGTGATTGCAGATTTTGACTCCATCAGTACCCTCTATTTCCTCATCCCCACCAAAACCAAAAGAGAAGGAAAATAAATAATGTGGCAGGATCTTTAATAGCCTATTGTCTGCAATATTAGAAATTATCCTTCCATATGCTTCTAGGTTGCATTTTTATTGTGTCTTTTATGAATGTAAAAGGTGGAACGGAAAAGATATCAATGTAGTATGTCATTCTTTAGGCTTTAATTTTTCAGCTAGTGTTTATATGTTAAACATGACAGTAATATTAACTATTACATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGTGAAGATCCACGATGTCAGCGTTGATCCTGAAAATGGAGCGGGAACGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGAAGTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACTGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGTGGGCAGCTTGATACACCATTGGAAGAGAAAGACGTGGTGGTGTTCATATCCACCCTGCATGGAGGCTAA

Coding sequence (CDS)

ATGTTAAACATGACAGTAATATTAACTATTACATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGTGAAGATCCACGATGTCAGCGTTGATCCTGAAAATGGAGCGGGAACGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGAAGTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACTGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGTGGGCAGCTTGATACACCATTGGAAGAGAAAGACGTGGTGGTGTTCATATCCACCCTGCATGGAGGCTAA

Protein sequence

MLNMTVILTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Homology
[Close]
BLAST of CmaCh17G000060 vs. Swiss-Prot
Match: URM12_ARATH (Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana GN=URM1-2 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.9e-40
Identity = 77/96 (80.21%), Postives = 85/96 (88.54%), Query Frame = 1 

Query: 9   TITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRP 68
           T+   GGLELLCDSVKIH V+++  N +  L MKDLLSWVR+NLIKERPEMFMKGDTVRP
Sbjct: 4   TLEFGGGLELLCDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDTVRP 63

Query: 69  GVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           GVLVLVNDCDWELSGQLDT LE+KDV+VFISTLHGG
Sbjct: 64  GVLVLVNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99

[Close]
BLAST of CmaCh17G000060 vs. Swiss-Prot
Match: URM11_ARATH (Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana GN=URM1-1 PE=3 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 5.4e-39
Identity = 79/99 (79.80%), Postives = 85/99 (85.86%), Query Frame = 1 

Query: 8   LTITCSGGLELLCDSVKIHDVSVDPENGAGT--LIMKDLLSWVRSNLIKERPEMFMKGDT 67
           LT+   GGLELLCDS KIH V+VD  NGA +    MK LLSWVR+NLIKERPEMFMKGDT
Sbjct: 3   LTLEFGGGLELLCDSEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDT 62

Query: 68  VRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           VRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Sbjct: 63  VRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101

[Close]
BLAST of CmaCh17G000060 vs. Swiss-Prot
Match: URM1_ORYSI (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica GN=URM1 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.7e-35
Identity = 69/98 (70.41%), Postives = 81/98 (82.65%), Query Frame = 1 

Query: 8   LTITCSGGLELLCD-SVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTV 67
           LT+   GGLELL + S K+H V + P +G G ++MK LL+WV+SNLIKERPEMF+KGD+V
Sbjct: 3   LTLEFGGGLELLLEKSTKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSV 62

Query: 68  RPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           RPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  RPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100

[Close]
BLAST of CmaCh17G000060 vs. Swiss-Prot
Match: URM1_ORYSJ (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica GN=URM1 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.7e-35
Identity = 69/98 (70.41%), Postives = 81/98 (82.65%), Query Frame = 1 

Query: 8   LTITCSGGLELLCD-SVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTV 67
           LT+   GGLELL + S K+H V + P +G G ++MK LL+WV+SNLIKERPEMF+KGD+V
Sbjct: 3   LTLEFGGGLELLLEKSTKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSV 62

Query: 68  RPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           RPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  RPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100

[Close]
BLAST of CmaCh17G000060 vs. Swiss-Prot
Match: URM1_MAIZE (Ubiquitin-related modifier 1 homolog OS=Zea mays GN=URM1 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-32
Identity = 69/99 (69.70%), Postives = 79/99 (79.80%), Query Frame = 1 

Query: 8   LTITCSGGLELLCD-SVKIHDVSVD-PENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDT 67
           LT+   GGLELL + S K+H V V  P++G G + MK LLSWV+ NLIKERPEMF+K D+
Sbjct: 3   LTLEFGGGLELLLENSTKVHKVEVTTPKDGQGKVTMKFLLSWVKENLIKERPEMFLKADS 62

Query: 68  VRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  VRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 101

[Close]
BLAST of CmaCh17G000060 vs. TrEMBL
Match: A0A0A0KCT7_CUCSA (Ubiquitin-related modifier 1 homolog OS=Cucumis sativus GN=Csa_6G075130 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 4.1e-46
Identity = 90/103 (87.38%), Postives = 96/103 (93.20%), Query Frame = 1 

Query: 2   LNMTVILTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFM 61
           ++MT+IL   CSGGLELLC+SVKIH+VS+DPENG G  IMKDLLSWVRSNLIKERPEMFM
Sbjct: 1   MDMTLILDFKCSGGLELLCNSVKIHNVSIDPENGVGKFIMKDLLSWVRSNLIKERPEMFM 60

Query: 62  KGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           KGDTVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 103

[Close]
BLAST of CmaCh17G000060 vs. TrEMBL
Match: B9RDI8_RICCO (Ubiquitin-related modifier 1 homolog OS=Ricinus communis GN=RCOM_1613470 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-41
Identity = 82/97 (84.54%), Postives = 90/97 (92.78%), Query Frame = 1 

Query: 8   LTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR 67
           LT+   GGLELLCDSVKIH+++VDP+NGA  L MKDLL+WVR+NLIKERPEMFMKGD+VR
Sbjct: 3   LTLEFGGGLELLCDSVKIHNINVDPKNGADKLTMKDLLAWVRNNLIKERPEMFMKGDSVR 62

Query: 68  PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]
BLAST of CmaCh17G000060 vs. TrEMBL
Match: A0A0L9VR89_PHAAN (Ubiquitin-related modifier 1 (Fragment) OS=Phaseolus angularis GN=LR48_Vigan11g042500 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.3e-41
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 1 

Query: 8   LTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR 67
           +T T SGGLELLCDS KIH+V+++  NG G LIMKDLLSWVR+NLIKERPEMFMKGDTVR
Sbjct: 1   ITETYSGGLELLCDSKKIHNVNIEQHNGEGKLIMKDLLSWVRTNLIKERPEMFMKGDTVR 60

Query: 68  PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 61  PGVLVLVNDCDWELSGQLDTSLEEKDVVVFISTLHGG 97

[Close]
BLAST of CmaCh17G000060 vs. TrEMBL
Match: A0A0S3SXY8_PHAAN (Ubiquitin-related modifier 1 homolog OS=Vigna angularis var. angularis GN=Vigan.09G141900 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.2e-41
Identity = 82/97 (84.54%), Postives = 88/97 (90.72%), Query Frame = 1 

Query: 8   LTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR 67
           LT+   GGLELLCDS KIH+V+++  NG G LIMKDLLSWVR+NLIKERPEMFMKGDTVR
Sbjct: 3   LTLEFGGGLELLCDSKKIHNVNIEQHNGEGKLIMKDLLSWVRTNLIKERPEMFMKGDTVR 62

Query: 68  PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTSLEEKDVVVFISTLHGG 99

[Close]
BLAST of CmaCh17G000060 vs. TrEMBL
Match: V7AN35_PHAVU (Ubiquitin-related modifier 1 homolog OS=Phaseolus vulgaris GN=PHAVU_010G089300g PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.4e-40
Identity = 81/97 (83.51%), Postives = 87/97 (89.69%), Query Frame = 1 

Query: 8   LTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR 67
           LT+   GGLELLCDS KIHDV+++ +NG   L MKDLLSWVR+NLIKERPEMFMKGDTVR
Sbjct: 3   LTLEFGGGLELLCDSKKIHDVNIELQNGEDKLTMKDLLSWVRTNLIKERPEMFMKGDTVR 62

Query: 68  PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTSLEEKDVVVFISTLHGG 99

[Close]
BLAST of CmaCh17G000060 vs. TAIR10
Match: AT3G61113.1 (AT3G61113.1 Ubiquitin related modifier 1)

HSP 1 Score: 164.9 bits (416), Expect = 2.7e-41
Identity = 77/96 (80.21%), Postives = 85/96 (88.54%), Query Frame = 1 

Query: 9   TITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRP 68
           T+   GGLELLCDSVKIH V+++  N +  L MKDLLSWVR+NLIKERPEMFMKGDTVRP
Sbjct: 4   TLEFGGGLELLCDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDTVRP 63

Query: 69  GVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           GVLVLVNDCDWELSGQLDT LE+KDV+VFISTLHGG
Sbjct: 64  GVLVLVNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99

[Close]
BLAST of CmaCh17G000060 vs. TAIR10
Match: AT2G45695.1 (AT2G45695.1 Ubiquitin related modifier 1)

HSP 1 Score: 161.4 bits (407), Expect = 3.0e-40
Identity = 79/99 (79.80%), Postives = 85/99 (85.86%), Query Frame = 1 

Query: 8   LTITCSGGLELLCDSVKIHDVSVDPENGAGT--LIMKDLLSWVRSNLIKERPEMFMKGDT 67
           LT+   GGLELLCDS KIH V+VD  NGA +    MK LLSWVR+NLIKERPEMFMKGDT
Sbjct: 3   LTLEFGGGLELLCDSEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDT 62

Query: 68  VRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           VRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Sbjct: 63  VRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101

[Close]
BLAST of CmaCh17G000060 vs. NCBI nr
Match: gi|700191008|gb|KGN46212.1| (hypothetical protein Csa_6G075130 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 5.9e-46
Identity = 90/103 (87.38%), Postives = 96/103 (93.20%), Query Frame = 1 

Query: 2   LNMTVILTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFM 61
           ++MT+IL   CSGGLELLC+SVKIH+VS+DPENG G  IMKDLLSWVRSNLIKERPEMFM
Sbjct: 1   MDMTLILDFKCSGGLELLCNSVKIHNVSIDPENGVGKFIMKDLLSWVRSNLIKERPEMFM 60

Query: 62  KGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           KGDTVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 103

[Close]
BLAST of CmaCh17G000060 vs. NCBI nr
Match: gi|659120361|ref|XP_008460154.1| (PREDICTED: ubiquitin-related modifier 1 homolog 2 [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 2.1e-43
Identity = 86/97 (88.66%), Postives = 91/97 (93.81%), Query Frame = 1 

Query: 8   LTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR 67
           LT+   GGLELLC+SVKIH+VS+DPENG G LIMKDLLSWVR+NLIKERPEMFMKGDTVR
Sbjct: 3   LTLEFGGGLELLCNSVKIHNVSIDPENGVGKLIMKDLLSWVRANLIKERPEMFMKGDTVR 62

Query: 68  PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]
BLAST of CmaCh17G000060 vs. NCBI nr
Match: gi|449454498|ref|XP_004144991.1| (PREDICTED: ubiquitin-related modifier 1 homolog 2 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 2.8e-43
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 1 

Query: 8   LTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR 67
           LT+   GGLELLC+SVKIH+VS+DPENG G  IMKDLLSWVRSNLIKERPEMFMKGDTVR
Sbjct: 3   LTLEFGGGLELLCNSVKIHNVSIDPENGVGKFIMKDLLSWVRSNLIKERPEMFMKGDTVR 62

Query: 68  PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]
BLAST of CmaCh17G000060 vs. NCBI nr
Match: gi|255541426|ref|XP_002511777.1| (PREDICTED: ubiquitin-related modifier 1 homolog 2 [Ricinus communis])

HSP 1 Score: 176.8 bits (447), Expect = 2.0e-41
Identity = 82/97 (84.54%), Postives = 90/97 (92.78%), Query Frame = 1 

Query: 8   LTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR 67
           LT+   GGLELLCDSVKIH+++VDP+NGA  L MKDLL+WVR+NLIKERPEMFMKGD+VR
Sbjct: 3   LTLEFGGGLELLCDSVKIHNINVDPKNGADKLTMKDLLAWVRNNLIKERPEMFMKGDSVR 62

Query: 68  PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]
BLAST of CmaCh17G000060 vs. NCBI nr
Match: gi|920718195|gb|KOM57392.1| (hypothetical protein LR48_Vigan11g042500, partial [Vigna angularis])

HSP 1 Score: 176.0 bits (445), Expect = 3.4e-41
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 1 

Query: 8   LTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR 67
           +T T SGGLELLCDS KIH+V+++  NG G LIMKDLLSWVR+NLIKERPEMFMKGDTVR
Sbjct: 1   ITETYSGGLELLCDSKKIHNVNIEQHNGEGKLIMKDLLSWVRTNLIKERPEMFMKGDTVR 60

Query: 68  PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 61  PGVLVLVNDCDWELSGQLDTSLEEKDVVVFISTLHGG 97

The following BLAST results are available for this feature:
BLAST of CmaCh17G000060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
URM12_ARATH4.9e-4080.21Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana GN=URM1-2 PE=3 SV... [more]
URM11_ARATH5.4e-3979.80Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana GN=URM1-1 PE=3 SV... [more]
URM1_ORYSI4.7e-3570.41Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica GN=URM1 PE=3 ... [more]
URM1_ORYSJ4.7e-3570.41Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica GN=URM1 PE=... [more]
URM1_MAIZE1.3e-3269.70Ubiquitin-related modifier 1 homolog OS=Zea mays GN=URM1 PE=3 SV=1[more]
BLAST of CmaCh17G000060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCT7_CUCSA4.1e-4687.38Ubiquitin-related modifier 1 homolog OS=Cucumis sativus GN=Csa_6G075130 PE=3 SV=... [more]
B9RDI8_RICCO1.4e-4184.54Ubiquitin-related modifier 1 homolog OS=Ricinus communis GN=RCOM_1613470 PE=3 SV... [more]
A0A0L9VR89_PHAAN2.3e-4185.57Ubiquitin-related modifier 1 (Fragment) OS=Phaseolus angularis GN=LR48_Vigan11g0... [more]
A0A0S3SXY8_PHAAN5.2e-4184.54Ubiquitin-related modifier 1 homolog OS=Vigna angularis var. angularis GN=Vigan.... [more]
V7AN35_PHAVU3.4e-4083.51Ubiquitin-related modifier 1 homolog OS=Phaseolus vulgaris GN=PHAVU_010G089300g ... [more]
BLAST of CmaCh17G000060 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61113.12.7e-4180.21 Ubiquitin related modifier 1[more]
AT2G45695.13.0e-4079.80 Ubiquitin related modifier 1[more]
BLAST of CmaCh17G000060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191008|gb|KGN46212.1|5.9e-4687.38hypothetical protein Csa_6G075130 [Cucumis sativus][more]
gi|659120361|ref|XP_008460154.1|2.1e-4388.66PREDICTED: ubiquitin-related modifier 1 homolog 2 [Cucumis melo][more]
gi|449454498|ref|XP_004144991.1|2.8e-4388.66PREDICTED: ubiquitin-related modifier 1 homolog 2 [Cucumis sativus][more]
gi|255541426|ref|XP_002511777.1|2.0e-4184.54PREDICTED: ubiquitin-related modifier 1 homolog 2 [Ricinus communis][more]
gi|920718195|gb|KOM57392.1|3.4e-4185.57hypothetical protein LR48_Vigan11g042500, partial [Vigna angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012675Beta-grasp_dom_sf
IPR015221Urm1
IPR016155Mopterin_synth/thiamin_S_b
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0034227tRNA thio-modification
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032447 protein urmylation
biological_process GO:0034227 tRNA thio-modification
biological_process GO:0002098 tRNA wobble uridine modification
cellular_component GO:0005829 cytosol
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G000060.1CmaCh17G000060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012675Beta-grasp domainGENE3DG3DSA:3.10.20.30coord: 5..104
score: 8.6
IPR015221Ubiquitin-related modifier 1HAMAPMF_03048Urm1coord: 8..104
score:
IPR015221Ubiquitin-related modifier 1PIRPIRSF037379Urm1coord: 4..104
score: 2.7
IPR015221Ubiquitin-related modifier 1PFAMPF09138Urm1coord: 9..104
score: 3.0
IPR016155Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-graspunknownSSF54285MoaD/ThiScoord: 7..104
score: 2.83
NoneNo IPR availablePANTHERPTHR14986RURM1 PROTEINcoord: 1..104
score: 7.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G000060Cucsa.363050Cucumber (Gy14) v1cgycmaB0997
CmaCh17G000060Cla006937Watermelon (97103) v1cmawmB359
CmaCh17G000060Csa6G075130Cucumber (Chinese Long) v2cmacuB382
CmaCh17G000060MELO3C022522Melon (DHL92) v3.5.1cmameB314
CmaCh17G000060ClCG06G000160Watermelon (Charleston Gray)cmawcgB329
CmaCh17G000060CSPI06G05590Wild cucumber (PI 183967)cmacpiB386
CmaCh17G000060CmoCh08G009050Cucurbita moschata (Rifu)cmacmoB382
CmaCh17G000060CmoCh17G000080Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G000060Lsi09G019250Bottle gourd (USVL1VR-Ls)cmalsiB332
CmaCh17G000060Cp4.1LG12g00050Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G000060Cp4.1LG17g02460Cucurbita pepo (Zucchini)cmacpeB383
CmaCh17G000060MELO3C022522.2Melon (DHL92) v3.6.1cmamedB366
CmaCh17G000060CsaV3_6G005910Cucumber (Chinese Long) v3cmacucB0454
CmaCh17G000060Cla97C06G109420Watermelon (97103) v2cmawmbB378
CmaCh17G000060BhiUN123G59Wax gourdcmawgoB0498
CmaCh17G000060CsGy6G005530Cucumber (Gy14) v2cgybcmaB766
CmaCh17G000060Carg11103Silver-seed gourdcarcmaB1488
CmaCh17G000060Carg10225Silver-seed gourdcarcmaB0314
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh17G000060CmaCh08G009360Cucurbita maxima (Rimu)cmacmaB390
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G000060Cucumber (Chinese Long) v3cmacucB0425
CmaCh17G000060Watermelon (97103) v2cmawmbB366
CmaCh17G000060Wild cucumber (PI 183967)cmacpiB361
CmaCh17G000060Cucumber (Chinese Long) v2cmacuB357
CmaCh17G000060Watermelon (97103) v1cmawmB344
CmaCh17G000060Bottle gourd (USVL1VR-Ls)cmalsiB356
CmaCh17G000060Cucumber (Gy14) v2cgybcmaB345