Carg10225 (gene) Silver-seed gourd

Overview
NameCarg10225
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUbiquitin-related modifier 1 homolog
LocationCucurbita_argyrosperma_scaffold_039 : 1175038 .. 1177834 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCTCTCTCTCTCAAATTTTACTTGGAAGGAAAATTTCCCAGTTTGTTTAGCTCTGATCCTGGAACACAGAGTTTCAATGCCTTCTGTTTCTGGGAAAGTTGGAAATTAGAAGAAATATCTTATTCGATCGTGTTTTTATGTTTTTTCGCAGCTTATAAACTTGAATTTCTGTGTCGTTGTCTATCCATAAAAATCGATTGTTTTCTGAATTTGAGCAAACTCTTGAGTTCGTGAATTCTGTGTATTAATGAGGTATCGTGATACTGATGTTGGGGAATATTTCTCTTGAGCTGGCTCAAGGGAAGAAAAGATCGACTATTGGATATAATTGTTAGTGTTTAGTTGTCAATAATTCAAAATCTGCACCTATTTCAGGATATTGGGACCAAAACTATAGTTTTGCTTGAATATCCAGTTGCTTCACTGCCTCCATATTGTTTTCATTCTGGTTTTGTTCGTTTATTACCATTGTTTTTGAAGCATATGCCAGTTTGTAAATTACACTCCGTTGTTCTTTCGTTAGATTATATATACATTGGAACTCGATAACCTGTTCTTTATCATATTCAACTTTTATTTGTGTTCGGTGGAACTCTTTGGCTGGATTGTACCATTTATAATTGCATATGTTGTTTCAACAATTCATCAGTGTGTTGTTTACAGTGCTTGCAGATTTTGACTCCATCAGTACCCTCTATATTTCCTCATCCCCACCAAAGCCAAAAAAGAAGGAAAATAAATAATGTGGCAGTATCTTGAATAGCCTTTTTCTGCAATATTAGAAATTATCCTTCCATATGCTTCTAGGTTGCATTTTTATTGCGTCTTTTATGACTGTAAAAGGTGAAACGGAAAAGATATCGATGCAGTATGTCATTCTTTAGGCTTTATTTTTTCAGCTAGTGTTTATATGTTAAACATGACAGTAATATTAACTTTTAAATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGAGAAGATCCACGATGTCCGCGTTGATCCTGAAAATGGAGCGGGAACGGTAAATTAAAACTTTTCAACAATTTAATGAAAGATCGAGTCAATATCAGATTCATATTTTCATGCTTCATTCCTCTGTTTATCAAGCAAAAGTCTAATGCTTTCTTTCAAAACGGTTCTCAGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGAAGTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACTGTGTAAGTTGTAAAAGAAATATCTCATTAGTTTATCAATTTTCTTTTTTAAAGATTGTGAATGAGAGGATGAACGTGAAAGTGGGTGAAGAATTGTGATGGTTTCAAATGTGGTTCCTGCAGAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGTGGGCAGCTTGATACACCATTGGAAGAGAAAGACGTGGTGGTGTTCATATCCACCCTGCATGGAGGCTAACTCAGTAAGGAATATGGCTTTTCCAGCTTGTAGCTACGTGATTGTTGTCTGAGATAATGTGGCATTTTAACCTTAAAAATACGTATTGTTTGTTATCCTAAACTATACAAAGAATAATCCTGATCAGAGTTTGCTCTGAGGCTTGTGAAATCATCTTGTTGGGGTGGATGTTCATGTTCAATGACTGAATAAAGTAGAAGAAAGGCTATATTCATAGGCATTTCAATTCATGTTCATGTTCATGTTCTGTTGTATAAGAAGTTCGAAAAGGTATTTTAAATATTTCTTTTCAACATGTCAGACACAGAAATATATTGAGACAACCATAGAAGTTTTCTTTAAGGTTGAAGCATTGAAGTAACGGTGACTGATTTTCAATACCAAAAATCTTGATGCGGAGTTCCATCTTTCGGAATGAAAATAAAAGTCAAAGTCGAAGAAACTGGAATAATGAATGAACAACTATATTGACCAGAAAATCGAAACAGTAAAAATAGTCCCAAGTCCTAAGTTTACGCAGCAGCATTTGTTCTAATAAAACACTTTCGGTATTATAATTCTCCAAGAAGAAATTCTTTAAAAGAAAAAAAAATGTAATAAGGAAAAACAAAAGCAAAGATAATAGAGAGTTGGGAAAAAGAAAGGGTATTGTTTTTAGGCCTTTTGCTTCCCTTTTCTAATTCTATCAAGCTCAGCTTCAGCATCGTTCAACTGCTGTTTCAACGTTGATATTTTCCTCTCCAAGTCTTCCACCGAGTCTCTGCTAGTCGCTGGTTCATATGGCCTCACAAACTTACCTGAAAAGTCCTTCAGAGCTTCAACCCCAGTCACCTGCAATACAGTGCACAACAAGTTTGGAAATCAAAGCTCTTCCCAATCTTTTTCTTTTGCTTCTTTCTGTTTTCAAATCAAAGCTCTTGCTTGGCATCTTCAACTTTGGTGTTTTATCCACTAAGTTACGTTCATACTAACTAAAAATAAGATTGATATAACAGAACACGATATGTATAAAAGAGTTAGCAACTTGTCTCAGACGGTACAACAAATCGGTACTCACTACTATAAGACTAGGATCGGGTGAATAGGCACCTATTGCCATTTCTACCTTCCTTCTCCTCTCAAGGTCTACCAAACTTCAATAATTATATAGGAGAGAATGATAAGTTTAAAAAACAAAATATAATTCAAGACTTGGAACAAAACCCAATGGCAGACATGAAGGAAAAAGCATTTATGGAGTAGATGATAAAAGAAAACAGAATGAATCTCGATATATTGAGACAAATATGTGCAGAGAAAGCAGTACCTCTTGAGGCAGTAATGGCAA

mRNA sequence

CTCTCTCTCTCTCTCAAATTTTACTTGGAAGGAAAATTTCCCAGTTTGTTTAGCTCTGATCCTGGAACACAGAGTTTCAATGCCTTCTGTTTCTGGGAAAGTTGGAAATTAGAAGAAATATCTTATTCGATCGTGTTTTTATGTTTTTTCGCAGCTTATAAACTTGAATTTCTGTGTCGTTGTCTATCCATAAAAATCGATTGTTTTCTGAATTTGAGCAAACTCTTGAGTTCGTGAATTCTGTGTATTAATGAGGTATCGTGATACTGATGTTGGGGAATATTTCTCTTGAGCTGGCTCAAGGGAAGAAAAGATCGACTATTGGATATAATTGTTAGTGTTTAGTTGTCAATAATTCAAAATCTGCACCTATTTCAGGATATTGGGACCAAAACTATAGTTTTGCTTGAATATCCAGTTGCTTCACTGCCTCCATATTGTTTTCATTCTGGTTTTGTTCGTTTATTACCATTGTTTTTGAAGCATATGCCAGTTTGTAAATTACACTCCGTTGTTCTTTCGTTAGATTATATATACATTGGAACTCGATAACCTGTTCTTTATCATATTCAACTTTTATTTGTGTTCGGTGGAACTCTTTGGCTGGATTGTACCATTTATAATTGCATATGTTGTTTCAACAATTCATCAGTGTGTTGTTTACAGTGCTTGCAGATTTTGACTCCATCAGTACCCTCTATATTTCCTCATCCCCACCAAAGCCAAAAAAGAAGGAAAATAAATAATGTGGCAGTATCTTGAATAGCCTTTTTCTGCAATATTAGAAATTATCCTTCCATATGCTTCTAGGTTGCATTTTTATTGCGTCTTTTATGACTGTAAAAGGTGAAACGGAAAAGATATCGATGCAGTATGTCATTCTTTAGGCTTTATTTTTTCAGCTAGTGTTTATATGTTAAACATGACAGTAATATTAACTTTTAAATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGAGAAGATCCACGATGTCCGCGTTGATCCTGAAAATGGAGCGGGAACGCAAAAGTCTAATGCTTTCTTTCAAAACGGTTCTCAGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGAAGTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACTGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGTGGGCAGCTTGATACACCATTGGAAGAGAAAGACGTGGTGGTGTTCATATCCACCCTGCATGGAGGCTAACTCAGTAAGGAATATGGCTTTTCCAGCTTGTAGCTACGTGATTGTTGTCTGAGATAATGTGGCATTTTAACCTTAAAAATACGTATTGTTTGTTATCCTAAACTATACAAAGAATAATCCTGATCAGAGTTTGCTCTGAGGCTTGTGAAATCATCTTGTTGGGGTGGATGTTCATGTTCAATGACTGAATAAAGTAGAAGAAAGGCTATATTCATAGGCATTTCAATTCATGTTCATGTTCATGTTCTGTTGTATAAGAAGTTCGAAAAGGTATTTTAAATATTTCTTTTCAACATGTCAGACACAGAAATATATTGAGACAACCATAGAAGTTTTCTTTAAGGTTGAAGCATTGAAGTAACGGTGACTGATTTTCAATACCAAAAATCTTGATGCGGAGTTCCATCTTTCGGAATGAAAATAAAAGTCAAAGTCGAAGAAACTGGAATAATGAATGAACAACTATATTGACCAGAAAATCGAAACAGTAAAAATAGTCCCAAGTCCTAAGTTTACGCAGCAGCATTTGTTCTAATAAAACACTTTCGGTATTATAATTCTCCAAGAAGAAATTCTTTAAAAGAAAAAAAAATGTAATAAGGAAAAACAAAAGCAAAGATAATAGAGAGTTGGGAAAAAGAAAGGGTATTGTTTTTAGGCCTTTTGCTTCCCTTTTCTAATTCTATCAAGCTCAGCTTCAGCATCGTTCAACTGCTGTTTCAACGTTGATATTTTCCTCTCCAAGTCTTCCACCGAGTCTCTGCTAGTCGCTGGTTCATATGGCCTCACAAACTTACCTGAAAAGTCCTTCAGAGCTTCAACCCCAGTCACCTGCAATACAGTGCACAACAAGTTTGGAAATCAAAGCTCTTCCCAATCTTTTTCTTTTGCTTCTTTCTGTTTTCAAATCAAAGCTCTTGCTTGGCATCTTCAACTTTGGTGTTTTATCCACTAAGTTACGTTCATACTAACTAAAAATAAGATTGATATAACAGAACACGATATGTATAAAAGAGTTAGCAACTTGTCTCAGACGGTACAACAAATCGGTACTCACTACTATAAGACTAGGATCGGGTGAATAGGCACCTATTGCCATTTCTACCTTCCTTCTCCTCTCAAGGTCTACCAAACTTCAATAATTATATAGGAGAGAATGATAAGTTTAAAAAACAAAATATAATTCAAGACTTGGAACAAAACCCAATGGCAGACATGAAGGAAAAAGCATTTATGGAGTAGATGATAAAAGAAAACAGAATGAATCTCGATATATTGAGACAAATATGTGCAGAGAAAGCAGTACCTCTTGAGGCAGTAATGGCAA

Coding sequence (CDS)

ATGTTAAACATGACAGTAATATTAACTTTTAAATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGAGAAGATCCACGATGTCCGCGTTGATCCTGAAAATGGAGCGGGAACGCAAAAGTCTAATGCTTTCTTTCAAAACGGTTCTCAGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGAAGTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACTGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGTGGGCAGCTTGATACACCATTGGAAGAGAAAGACGTGGTGGTGTTCATATCCACCCTGCATGGAGGCTAA

Protein sequence

MLNMTVILTFKCSGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Homology
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BLAST of Carg10225 vs. NCBI nr
Match: XP_022145475.1 (ubiquitin-related modifier 1 homolog 2 isoform X1 [Momordica charantia])

HSP 1 Score: 191.0 bits (484), Expect = 2.2e-45
Identity = 91/115 (79.13%), Postives = 100/115 (86.96%), Query Frame = 0 

Query: 2   LNMTVILTFKCSGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVR 61
           ++MT++L FKCSGGLELLC+S KIH+V +DPENGAG            +LIMKDLLSWVR
Sbjct: 1   MDMTIVLAFKCSGGLELLCNSVKIHNVSIDPENGAG------------KLIMKDLLSWVR 60

Query: 62  SNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           +NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Sbjct: 61  TNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 103

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BLAST of Carg10225 vs. NCBI nr
Match: KGN46212.1 (hypothetical protein Csa_6G075130 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 1.2e-43
Identity = 90/115 (78.26%), Postives = 97/115 (84.35%), Query Frame = 0 

Query: 2   LNMTVILTFKCSGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVR 61
           ++MT+IL FKCSGGLELLC+S KIH+V +DPENG G            + IMKDLLSWVR
Sbjct: 1   MDMTLILDFKCSGGLELLCNSVKIHNVSIDPENGVG------------KFIMKDLLSWVR 60

Query: 62  SNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           SNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 61  SNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 103

[Close]
BLAST of Carg10225 vs. NCBI nr
Match: XP_022959205.1 (ubiquitin-related modifier 1 homolog 2-like isoform X1 [Cucurbita moschata] >XP_023006240.1 ubiquitin-related modifier 1 homolog 2-like isoform X1 [Cucurbita maxima] >XP_023547849.1 ubiquitin-related modifier 1 homolog 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.7 bits (465), Expect = 3.5e-43
Identity = 91/109 (83.49%), Postives = 92/109 (84.40%), Query Frame = 0 

Query: 8   LTFKCSGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVRSNLIKE 67
           LT +  GGLELLCDS KIHDV VDPENGAGT            LIMKDLLSWVRSNLIKE
Sbjct: 3   LTLEFGGGLELLCDSVKIHDVSVDPENGAGT------------LIMKDLLSWVRSNLIKE 62

Query: 68  RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Sbjct: 63  RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 99

[Close]
BLAST of Carg10225 vs. NCBI nr
Match: XP_022959206.1 (ubiquitin-related modifier 1 homolog 2-like isoform X2 [Cucurbita moschata] >XP_023006241.1 ubiquitin-related modifier 1 homolog 2-like isoform X2 [Cucurbita maxima] >XP_023547850.1 ubiquitin-related modifier 1 homolog 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.2 bits (461), Expect = 1.0e-42
Identity = 90/104 (86.54%), Postives = 90/104 (86.54%), Query Frame = 0 

Query: 13  SGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVRSNLIKERPEMF 72
           SGGLELLCDS KIHDV VDPENGAGT            LIMKDLLSWVRSNLIKERPEMF
Sbjct: 2   SGGLELLCDSVKIHDVSVDPENGAGT------------LIMKDLLSWVRSNLIKERPEMF 61

Query: 73  MKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           MKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Sbjct: 62  MKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 93

[Close]
BLAST of Carg10225 vs. NCBI nr
Match: XP_022145476.1 (ubiquitin-related modifier 1 homolog 2 isoform X2 [Momordica charantia])

HSP 1 Score: 176.4 bits (446), Expect = 5.6e-41
Identity = 86/109 (78.90%), Postives = 92/109 (84.40%), Query Frame = 0 

Query: 8   LTFKCSGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVRSNLIKE 67
           LT +  GGLELLC+S KIH+V +DPENGAG            +LIMKDLLSWVR+NLIKE
Sbjct: 3   LTLEFGGGLELLCNSVKIHNVSIDPENGAG------------KLIMKDLLSWVRTNLIKE 62

Query: 68  RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Sbjct: 63  RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 99

[Close]
BLAST of Carg10225 vs. TAIR10
Match: AT2G45695.1 (Ubiquitin related modifier 1)

HSP 1 Score: 161.8 bits (408), Expect = 2.6e-40
Identity = 80/109 (73.39%), Postives = 85/109 (77.98%), Query Frame = 0 

Query: 8   LTFKCSGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVRSNLIKE 67
           LT +  GGLELLCDSEKIH V VD  NGA          +     MK LLSWVR+NLIKE
Sbjct: 3   LTLEFGGGLELLCDSEKIHKVNVDLPNGA----------DSDDFTMKHLLSWVRTNLIKE 62

Query: 68  RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Sbjct: 63  RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101

[Close]
BLAST of Carg10225 vs. TAIR10
Match: AT3G61113.1 (Ubiquitin related modifier 1)

HSP 1 Score: 153.7 bits (387), Expect = 7.0e-38
Identity = 75/108 (69.44%), Postives = 82/108 (75.93%), Query Frame = 0 

Query: 9   TFKCSGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVRSNLIKER 68
           T +  GGLELLCDS KIH V ++               +   L MKDLLSWVR+NLIKER
Sbjct: 4   TLEFGGGLELLCDSVKIHKVNIN------------LLNDSDILTMKDLLSWVRTNLIKER 63

Query: 69  PEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           PEMFMKGDTVRPGVLVLVNDCDWELSGQLDT LE+KDV+VFISTLHGG
Sbjct: 64  PEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99

[Close]
BLAST of Carg10225 vs. Swiss-Prot
Match: sp|A0MDQ1|URM11_ARATH (Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=URM1-1 PE=3 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 4.7e-39
Identity = 80/109 (73.39%), Postives = 85/109 (77.98%), Query Frame = 0 

Query: 8   LTFKCSGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVRSNLIKE 67
           LT +  GGLELLCDSEKIH V VD  NGA          +     MK LLSWVR+NLIKE
Sbjct: 3   LTLEFGGGLELLCDSEKIHKVNVDLPNGA----------DSDDFTMKHLLSWVRTNLIKE 62

Query: 68  RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Sbjct: 63  RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101

[Close]
BLAST of Carg10225 vs. Swiss-Prot
Match: sp|B3H7G2|URM12_ARATH (Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=URM1-2 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-36
Identity = 75/108 (69.44%), Postives = 82/108 (75.93%), Query Frame = 0 

Query: 9   TFKCSGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVRSNLIKER 68
           T +  GGLELLCDS KIH V ++               +   L MKDLLSWVR+NLIKER
Sbjct: 4   TLEFGGGLELLCDSVKIHKVNIN------------LLNDSDILTMKDLLSWVRTNLIKER 63

Query: 69  PEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           PEMFMKGDTVRPGVLVLVNDCDWELSGQLDT LE+KDV+VFISTLHGG
Sbjct: 64  PEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99

[Close]
BLAST of Carg10225 vs. Swiss-Prot
Match: sp|Q7GBC8|URM1_ORYSI (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=URM1 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-32
Identity = 69/110 (62.73%), Postives = 82/110 (74.55%), Query Frame = 0 

Query: 8   LTFKCSGGLELLCD-SEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVRSNLIK 67
           LT +  GGLELL + S K+H V + P +G G            +++MK LL+WV+SNLIK
Sbjct: 3   LTLEFGGGLELLLEKSTKVHKVDLQPNDGDG------------KVVMKGLLAWVKSNLIK 62

Query: 68  ERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           ERPEMF+KGD+VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  ERPEMFLKGDSVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100

[Close]
BLAST of Carg10225 vs. Swiss-Prot
Match: sp|Q0D6M1|URM1_ORYSJ (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=URM1 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-32
Identity = 69/110 (62.73%), Postives = 82/110 (74.55%), Query Frame = 0 

Query: 8   LTFKCSGGLELLCD-SEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVRSNLIK 67
           LT +  GGLELL + S K+H V + P +G G            +++MK LL+WV+SNLIK
Sbjct: 3   LTLEFGGGLELLLEKSTKVHKVDLQPNDGDG------------KVVMKGLLAWVKSNLIK 62

Query: 68  ERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           ERPEMF+KGD+VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  ERPEMFLKGDSVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100

[Close]
BLAST of Carg10225 vs. Swiss-Prot
Match: sp|B6SXH2|URM1_MAIZE (Ubiquitin-related modifier 1 homolog OS=Zea mays OX=4577 GN=URM1 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.0e-30
Identity = 69/111 (62.16%), Postives = 80/111 (72.07%), Query Frame = 0 

Query: 8   LTFKCSGGLELLCD-SEKIHDVRV-DPENGAGTQKSNAFFQNGSQLIMKDLLSWVRSNLI 67
           LT +  GGLELL + S K+H V V  P++G G            ++ MK LLSWV+ NLI
Sbjct: 3   LTLEFGGGLELLLENSTKVHKVEVTTPKDGQG------------KVTMKFLLSWVKENLI 62

Query: 68  KERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           KERPEMF+K D+VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  KERPEMFLKADSVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 101

[Close]
BLAST of Carg10225 vs. TrEMBL
Match: tr|A0A0A0KCT7|A0A0A0KCT7_CUCSA (Ubiquitin-related modifier 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_6G075130 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 8.0e-44
Identity = 90/115 (78.26%), Postives = 97/115 (84.35%), Query Frame = 0 

Query: 2   LNMTVILTFKCSGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVR 61
           ++MT+IL FKCSGGLELLC+S KIH+V +DPENG G            + IMKDLLSWVR
Sbjct: 1   MDMTLILDFKCSGGLELLCNSVKIHNVSIDPENGVG------------KFIMKDLLSWVR 60

Query: 62  SNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           SNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 61  SNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 103

[Close]
BLAST of Carg10225 vs. TrEMBL
Match: tr|A0A1S3CCC7|A0A1S3CCC7_CUCME (Ubiquitin-related modifier 1 homolog OS=Cucumis melo OX=3656 GN=LOC103499050 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 9.1e-40
Identity = 84/109 (77.06%), Postives = 90/109 (82.57%), Query Frame = 0 

Query: 8   LTFKCSGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVRSNLIKE 67
           LT +  GGLELLC+S KIH+V +DPENG G            +LIMKDLLSWVR+NLIKE
Sbjct: 3   LTLEFGGGLELLCNSVKIHNVSIDPENGVG------------KLIMKDLLSWVRANLIKE 62

Query: 68  RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 63  RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]
BLAST of Carg10225 vs. TrEMBL
Match: tr|A0A1Q3C8W7|A0A1Q3C8W7_CEPFO (Ubiquitin-related modifier 1 homolog OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_20153 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.9e-39
Identity = 81/109 (74.31%), Postives = 91/109 (83.49%), Query Frame = 0 

Query: 8   LTFKCSGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVRSNLIKE 67
           LT +  GGLELLC+S KIH+V V+P+NGA             +LIMKDLL+WVR+NLIKE
Sbjct: 3   LTLEFGGGLELLCESVKIHNVNVEPQNGA------------DKLIMKDLLAWVRTNLIKE 62

Query: 68  RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           RPEMFMKGD+VRPGVLV+VNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Sbjct: 63  RPEMFMKGDSVRPGVLVIVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 99

[Close]
BLAST of Carg10225 vs. TrEMBL
Match: tr|A0A0S3SXY8|A0A0S3SXY8_PHAAN (Ubiquitin-related modifier 1 homolog OS=Vigna angularis var. angularis OX=157739 GN=Vigan.09G141900 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.0e-38
Identity = 82/109 (75.23%), Postives = 89/109 (81.65%), Query Frame = 0 

Query: 8   LTFKCSGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVRSNLIKE 67
           LT +  GGLELLCDS+KIH+V ++  NG G            +LIMKDLLSWVR+NLIKE
Sbjct: 3   LTLEFGGGLELLCDSKKIHNVNIEQHNGEG------------KLIMKDLLSWVRTNLIKE 62

Query: 68  RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 63  RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTSLEEKDVVVFISTLHGG 99

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BLAST of Carg10225 vs. TrEMBL
Match: tr|B9RDI8|B9RDI8_RICCO (Ubiquitin-related modifier 1 homolog OS=Ricinus communis OX=3988 GN=RCOM_1613470 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.2e-38
Identity = 81/109 (74.31%), Postives = 89/109 (81.65%), Query Frame = 0 

Query: 8   LTFKCSGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWVRSNLIKE 67
           LT +  GGLELLCDS KIH++ VDP+NGA             +L MKDLL+WVR+NLIKE
Sbjct: 3   LTLEFGGGLELLCDSVKIHNINVDPKNGA------------DKLTMKDLLAWVRNNLIKE 62

Query: 68  RPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 117
           RPEMFMKGD+VRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 63  RPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

The following BLAST results are available for this feature:
BLAST of Carg10225 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022145475.12.2e-4579.13ubiquitin-related modifier 1 homolog 2 isoform X1 [Momordica charantia][more]
KGN46212.11.2e-4378.26hypothetical protein Csa_6G075130 [Cucumis sativus][more]
XP_022959205.13.5e-4383.49ubiquitin-related modifier 1 homolog 2-like isoform X1 [Cucurbita moschata] >XP_... [more]
XP_022959206.11.0e-4286.54ubiquitin-related modifier 1 homolog 2-like isoform X2 [Cucurbita moschata] >XP_... [more]
XP_022145476.15.6e-4178.90ubiquitin-related modifier 1 homolog 2 isoform X2 [Momordica charantia][more]
BLAST of Carg10225 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G45695.12.6e-4073.39Ubiquitin related modifier 1[more]
AT3G61113.17.0e-3869.44Ubiquitin related modifier 1[more]
BLAST of Carg10225 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|A0MDQ1|URM11_ARATH4.7e-3973.39Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=URM1-1... [more]
sp|B3H7G2|URM12_ARATH1.3e-3669.44Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=URM1-2... [more]
sp|Q7GBC8|URM1_ORYSI1.9e-3262.73Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=U... [more]
sp|Q0D6M1|URM1_ORYSJ1.9e-3262.73Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
sp|B6SXH2|URM1_MAIZE3.0e-3062.16Ubiquitin-related modifier 1 homolog OS=Zea mays OX=4577 GN=URM1 PE=3 SV=1[more]
BLAST of Carg10225 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KCT7|A0A0A0KCT7_CUCSA8.0e-4478.26Ubiquitin-related modifier 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_6G075130 ... [more]
tr|A0A1S3CCC7|A0A1S3CCC7_CUCME9.1e-4077.06Ubiquitin-related modifier 1 homolog OS=Cucumis melo OX=3656 GN=LOC103499050 PE=... [more]
tr|A0A1Q3C8W7|A0A1Q3C8W7_CEPFO5.9e-3974.31Ubiquitin-related modifier 1 homolog OS=Cephalotus follicularis OX=3775 GN=CFOL_... [more]
tr|A0A0S3SXY8|A0A0S3SXY8_PHAAN1.0e-3875.23Ubiquitin-related modifier 1 homolog OS=Vigna angularis var. angularis OX=157739... [more]
tr|B9RDI8|B9RDI8_RICCO2.2e-3874.31Ubiquitin-related modifier 1 homolog OS=Ricinus communis OX=3988 GN=RCOM_1613470... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0034227tRNA thio-modification
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR016155Mopterin_synth/thiamin_S_b
IPR015221Urm1
IPR012675Beta-grasp_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034227 tRNA thio-modification
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10225-RACarg10225-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012675Beta-grasp domain superfamilyGENE3DG3DSA:3.10.20.30coord: 2..116
e-value: 7.9E-33
score: 114.9
IPR015221Ubiquitin-related modifier 1PIRSFPIRSF037379Urm1coord: 3..116
e-value: 1.4E-34
score: 116.2
IPR015221Ubiquitin-related modifier 1PFAMPF09138Urm1coord: 9..116
e-value: 2.3E-31
score: 107.9
IPR015221Ubiquitin-related modifier 1PANTHERPTHR14986RURM1 PROTEINcoord: 6..116
IPR015221Ubiquitin-related modifier 1HAMAPMF_03048Urm1coord: 6..116
score: 31.531
IPR015221Ubiquitin-related modifier 1CDDcd01764Urm1coord: 8..116
e-value: 9.77763E-35
score: 116.232
IPR016155Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-graspSUPERFAMILYSSF54285MoaD/ThiScoord: 8..116

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg10225Cla006937Watermelon (97103) v1carwmB0220
Carg10225Csa6G075130Cucumber (Chinese Long) v2carcuB0259
Carg10225MELO3C022522Melon (DHL92) v3.5.1carmeB0232
Carg10225ClCG06G000160Watermelon (Charleston Gray)carwcgB0222
Carg10225CSPI06G05590Wild cucumber (PI 183967)carcpiB0262
Carg10225Cucsa.363050Cucumber (Gy14) v1carcgyB0272
Carg10225CmaCh08G009360Cucurbita maxima (Rimu)carcmaB0320
Carg10225CmaCh17G000060Cucurbita maxima (Rimu)carcmaB0314
Carg10225CmoCh08G009050Cucurbita moschata (Rifu)carcmoB0325
Carg10225CmoCh17G000080Cucurbita moschata (Rifu)carcmoB0320
Carg10225Lsi09G019250Bottle gourd (USVL1VR-Ls)carlsiB205
Carg10225Cp4.1LG12g00050Cucurbita pepo (Zucchini)carcpeB0322
Carg10225Cp4.1LG17g02460Cucurbita pepo (Zucchini)carcpeB0326
Carg10225CsGy6G005530Cucumber (Gy14) v2carcgybB0247
Carg10225MELO3C022522.2Melon (DHL92) v3.6.1carmedB0239
Carg10225CsaV3_6G005910Cucumber (Chinese Long) v3carcucB0262
Carg10225Cla97C06G109420Watermelon (97103) v2carwmbB0231
Carg10225BhiUN123G59Wax gourdcarwgoB0288
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg10225Carg11103Silver-seed gourdcarcarB270
The following block(s) are covering this gene:
GeneOrganismBlock
Carg10225Watermelon (97103) v2carwmbB0229
Carg10225Watermelon (97103) v2carwmbB0232
Carg10225Cucumber (Gy14) v2carcgybB0248
Carg10225Cucumber (Gy14) v1carcgyB0271
Carg10225Cucumber (Chinese Long) v2carcuB0258
Carg10225Bottle gourd (USVL1VR-Ls)carlsiB203
Carg10225Melon (DHL92) v3.6.1carmedB0238