Carg11103 (gene) Silver-seed gourd

Overview
NameCarg11103
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUbiquitin-related modifier 1 homolog
LocationCucurbita_argyrosperma_scaffold_027 : 1029598 .. 1030142 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGACATGACAGTAATATTAATGTTTAAATGCAGTGGGGGATTGGAGTTGCTATGTGACTCTGTGAAGATCCATAATGTCAGCATCAATCCTGAAAATGGAGCGGGAAAGGTAAACCATATTTTACAACAAGTTAATGAAAGATTCTAGTCGATATCATCAGATTCATATCTTCCTGTTTCTCCTTTCATCTCTCTGTTTATTCGTCTAATGTTTTTTGTTTAACACGCGTCTCAGTTAGTCATGAAAGATTTGCTCTCTTGGGTCCGTTCTAATCTGATCAAGGAGCGGCCAGAAATGTTTATGAAAGGCGACACCGTGTAAGTAAAAGAAACATCTCGTTTATGAAAGCCGAAACTTTTTGAAGAATTGTGAGTATATTAAGGTTGTAGCTGACAGTGGCATGGTTTGGAATGTGGTGCAGAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGCGGGCAGCTTGACACAACATTGGAAGAGAAAGACGTGGTTGTGTTCATATCCACCTTGCATGGAGGCTAA

mRNA sequence

ATGGTCGACATGACAGTAATATTAATGTTTAAATGCAGTGGGGGATTGGAGTTGCTATGTGACTCTGTGAAGATCCATAATGTCAGCATCAATCCTGAAAATGGAGCGGGAAAGTTAGTCATGAAAGATTTGCTCTCTTGGGTCCGTTCTAATCTGATCAAGGAGCGGCCAGAAATGTTTATGAAAGGCGACACCGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGCGGGCAGCTTGACACAACATTGGAAGAGAAAGACGTGGTTGTGTTCATATCCACCTTGCATGGAGGCTAA

Coding sequence (CDS)

ATGGTCGACATGACAGTAATATTAATGTTTAAATGCAGTGGGGGATTGGAGTTGCTATGTGACTCTGTGAAGATCCATAATGTCAGCATCAATCCTGAAAATGGAGCGGGAAAGTTAGTCATGAAAGATTTGCTCTCTTGGGTCCGTTCTAATCTGATCAAGGAGCGGCCAGAAATGTTTATGAAAGGCGACACCGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGCGGGCAGCTTGACACAACATTGGAAGAGAAAGACGTGGTTGTGTTCATATCCACCTTGCATGGAGGCTAA

Protein sequence

MVDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Homology
[Close]
BLAST of Carg11103 vs. NCBI nr
Match: XP_022145475.1 (ubiquitin-related modifier 1 homolog 2 isoform X1 [Momordica charantia])

HSP 1 Score: 202.6 bits (514), Expect = 6.5e-49
Identity = 94/103 (91.26%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 2   VDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFM 61
           +DMT++L FKCSGGLELLC+SVKIHNVSI+PENGAGKL+MKDLLSWVR+NLIKERPEMFM
Sbjct: 1   MDMTIVLAFKCSGGLELLCNSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 60

Query: 62  KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           KGDTVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 103

[Close]
BLAST of Carg11103 vs. NCBI nr
Match: KGN46212.1 (hypothetical protein Csa_6G075130 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 1.1e-48
Identity = 95/103 (92.23%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 2   VDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFM 61
           +DMT+IL FKCSGGLELLC+SVKIHNVSI+PENG GK +MKDLLSWVRSNLIKERPEMFM
Sbjct: 1   MDMTLILDFKCSGGLELLCNSVKIHNVSIDPENGVGKFIMKDLLSWVRSNLIKERPEMFM 60

Query: 62  KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 103

[Close]
BLAST of Carg11103 vs. NCBI nr
Match: XP_022999845.1 (ubiquitin-related modifier 1 homolog 2 [Cucurbita maxima])

HSP 1 Score: 191.0 bits (484), Expect = 2.0e-45
Identity = 91/97 (93.81%), Postives = 92/97 (94.85%), Query Frame = 0 

Query: 8   LMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVR 67
           L  +  GGLELLCDSVKIHNVSINPENG GKLVMKDLLSWVRSNLIKERPEMFMKGDTVR
Sbjct: 3   LTLEFGGGLELLCDSVKIHNVSINPENGVGKLVMKDLLSWVRSNLIKERPEMFMKGDTVR 62

Query: 68  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]
BLAST of Carg11103 vs. NCBI nr
Match: XP_022964356.1 (ubiquitin-related modifier 1 homolog 2 [Cucurbita moschata])

HSP 1 Score: 190.3 bits (482), Expect = 3.4e-45
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0 

Query: 8   LMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVR 67
           L  +  GGLELLCDSVKIHN+SINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKG+TVR
Sbjct: 3   LTLEFGGGLELLCDSVKIHNISINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGNTVR 62

Query: 68  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]
BLAST of Carg11103 vs. NCBI nr
Match: XP_023514461.1 (ubiquitin-related modifier 1 homolog 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.5 bits (480), Expect = 5.7e-45
Identity = 91/97 (93.81%), Postives = 92/97 (94.85%), Query Frame = 0 

Query: 8   LMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVR 67
           L  +  GGLELLCDSVKIHNVSIN ENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVR
Sbjct: 3   LTLEFGGGLELLCDSVKIHNVSINSENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVR 62

Query: 68  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]
BLAST of Carg11103 vs. TAIR10
Match: AT3G61113.1 (Ubiquitin related modifier 1)

HSP 1 Score: 167.5 bits (423), Expect = 4.2e-42
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 0 

Query: 14  GGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVL 73
           GGLELLCDSVKIH V+IN  N +  L MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVL
Sbjct: 9   GGLELLCDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVL 68

Query: 74  VNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           VNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Sbjct: 69  VNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99

[Close]
BLAST of Carg11103 vs. TAIR10
Match: AT2G45695.1 (Ubiquitin related modifier 1)

HSP 1 Score: 157.9 bits (398), Expect = 3.3e-39
Identity = 76/99 (76.77%), Postives = 83/99 (83.84%), Query Frame = 0 

Query: 8   LMFKCSGGLELLCDSVKIHNVSINPENGAGK--LVMKDLLSWVRSNLIKERPEMFMKGDT 67
           L  +  GGLELLCDS KIH V+++  NGA      MK LLSWVR+NLIKERPEMFMKGDT
Sbjct: 3   LTLEFGGGLELLCDSEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDT 62

Query: 68  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           VRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Sbjct: 63  VRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101

[Close]
BLAST of Carg11103 vs. Swiss-Prot
Match: sp|B3H7G2|URM12_ARATH (Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=URM1-2 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 7.6e-41
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 0 

Query: 14  GGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVL 73
           GGLELLCDSVKIH V+IN  N +  L MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVL
Sbjct: 9   GGLELLCDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVL 68

Query: 74  VNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           VNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Sbjct: 69  VNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99

[Close]
BLAST of Carg11103 vs. Swiss-Prot
Match: sp|A0MDQ1|URM11_ARATH (Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=URM1-1 PE=3 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 6.0e-38
Identity = 76/99 (76.77%), Postives = 83/99 (83.84%), Query Frame = 0 

Query: 8   LMFKCSGGLELLCDSVKIHNVSINPENGAGK--LVMKDLLSWVRSNLIKERPEMFMKGDT 67
           L  +  GGLELLCDS KIH V+++  NGA      MK LLSWVR+NLIKERPEMFMKGDT
Sbjct: 3   LTLEFGGGLELLCDSEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDT 62

Query: 68  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           VRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Sbjct: 63  VRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101

[Close]
BLAST of Carg11103 vs. Swiss-Prot
Match: sp|Q7GBC8|URM1_ORYSI (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=URM1 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.1e-35
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 0 

Query: 8   LMFKCSGGLELLCD-SVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTV 67
           L  +  GGLELL + S K+H V + P +G GK+VMK LL+WV+SNLIKERPEMF+KGD+V
Sbjct: 3   LTLEFGGGLELLLEKSTKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSV 62

Query: 68  RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           RPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  RPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100

[Close]
BLAST of Carg11103 vs. Swiss-Prot
Match: sp|Q0D6M1|URM1_ORYSJ (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=URM1 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.1e-35
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 0 

Query: 8   LMFKCSGGLELLCD-SVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTV 67
           L  +  GGLELL + S K+H V + P +G GK+VMK LL+WV+SNLIKERPEMF+KGD+V
Sbjct: 3   LTLEFGGGLELLLEKSTKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSV 62

Query: 68  RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           RPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  RPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100

[Close]
BLAST of Carg11103 vs. Swiss-Prot
Match: sp|B6SXH2|URM1_MAIZE (Ubiquitin-related modifier 1 homolog OS=Zea mays OX=4577 GN=URM1 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 7.6e-33
Identity = 68/99 (68.69%), Postives = 79/99 (79.80%), Query Frame = 0 

Query: 8   LMFKCSGGLELLCD-SVKIHNVSI-NPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDT 67
           L  +  GGLELL + S K+H V +  P++G GK+ MK LLSWV+ NLIKERPEMF+K D+
Sbjct: 3   LTLEFGGGLELLLENSTKVHKVEVTTPKDGQGKVTMKFLLSWVKENLIKERPEMFLKADS 62

Query: 68  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  VRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 101

[Close]
BLAST of Carg11103 vs. TrEMBL
Match: tr|A0A0A0KCT7|A0A0A0KCT7_CUCSA (Ubiquitin-related modifier 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_6G075130 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 7.4e-49
Identity = 95/103 (92.23%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 2   VDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFM 61
           +DMT+IL FKCSGGLELLC+SVKIHNVSI+PENG GK +MKDLLSWVRSNLIKERPEMFM
Sbjct: 1   MDMTLILDFKCSGGLELLCNSVKIHNVSIDPENGVGKFIMKDLLSWVRSNLIKERPEMFM 60

Query: 62  KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 103

[Close]
BLAST of Carg11103 vs. TrEMBL
Match: tr|A0A1S3CCC7|A0A1S3CCC7_CUCME (Ubiquitin-related modifier 1 homolog OS=Cucumis melo OX=3656 GN=LOC103499050 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.5e-44
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 0 

Query: 8   LMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVR 67
           L  +  GGLELLC+SVKIHNVSI+PENG GKL+MKDLLSWVR+NLIKERPEMFMKGDTVR
Sbjct: 3   LTLEFGGGLELLCNSVKIHNVSIDPENGVGKLIMKDLLSWVRANLIKERPEMFMKGDTVR 62

Query: 68  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]
BLAST of Carg11103 vs. TrEMBL
Match: tr|B9RDI8|B9RDI8_RICCO (Ubiquitin-related modifier 1 homolog OS=Ricinus communis OX=3988 GN=RCOM_1613470 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.1e-42
Identity = 82/97 (84.54%), Postives = 91/97 (93.81%), Query Frame = 0 

Query: 8   LMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVR 67
           L  +  GGLELLCDSVKIHN++++P+NGA KL MKDLL+WVR+NLIKERPEMFMKGD+VR
Sbjct: 3   LTLEFGGGLELLCDSVKIHNINVDPKNGADKLTMKDLLAWVRNNLIKERPEMFMKGDSVR 62

Query: 68  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]
BLAST of Carg11103 vs. TrEMBL
Match: tr|A0A1J7GNP7|A0A1J7GNP7_LUPAN (Ubiquitin-related modifier 1 homolog OS=Lupinus angustifolius OX=3871 GN=TanjilG_14777 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-41
Identity = 84/101 (83.17%), Postives = 90/101 (89.11%), Query Frame = 0 

Query: 4   MTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKG 63
           M  I MF  SGGLELLCDS KIHNV++  +NG  KL+MKDLLSWVR+NLIKERPEMFMKG
Sbjct: 1   MAEIFMFLYSGGLELLCDSKKIHNVNVEQQNGEDKLIMKDLLSWVRTNLIKERPEMFMKG 60

Query: 64  DTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           DTVRPGVLVLVNDCDWELSGQL TTLE+KDVVVFISTLHGG
Sbjct: 61  DTVRPGVLVLVNDCDWELSGQLSTTLEDKDVVVFISTLHGG 101

[Close]
BLAST of Carg11103 vs. TrEMBL
Match: tr|A0A0L9VR89|A0A0L9VR89_PHAAN (Ubiquitin-related modifier 1 (Fragment) OS=Phaseolus angularis OX=3914 GN=LR48_Vigan11g042500 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-41
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 0 

Query: 13  SGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLV 72
           SGGLELLCDS KIHNV+I   NG GKL+MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLV
Sbjct: 6   SGGLELLCDSKKIHNVNIEQHNGEGKLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLV 65

Query: 73  LVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           LVNDCDWELSGQLDT+LEEKDVVVFISTLHGG
Sbjct: 66  LVNDCDWELSGQLDTSLEEKDVVVFISTLHGG 97

The following BLAST results are available for this feature:
BLAST of Carg11103 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022145475.16.5e-4991.26ubiquitin-related modifier 1 homolog 2 isoform X1 [Momordica charantia][more]
KGN46212.11.1e-4892.23hypothetical protein Csa_6G075130 [Cucumis sativus][more]
XP_022999845.12.0e-4593.81ubiquitin-related modifier 1 homolog 2 [Cucurbita maxima][more]
XP_022964356.13.4e-4592.78ubiquitin-related modifier 1 homolog 2 [Cucurbita moschata][more]
XP_023514461.15.7e-4593.81ubiquitin-related modifier 1 homolog 2 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg11103 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61113.14.2e-4286.81Ubiquitin related modifier 1[more]
AT2G45695.13.3e-3976.77Ubiquitin related modifier 1[more]
BLAST of Carg11103 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|B3H7G2|URM12_ARATH7.6e-4186.81Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=URM1-2... [more]
sp|A0MDQ1|URM11_ARATH6.0e-3876.77Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=URM1-1... [more]
sp|Q7GBC8|URM1_ORYSI2.1e-3571.43Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=U... [more]
sp|Q0D6M1|URM1_ORYSJ2.1e-3571.43Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
sp|B6SXH2|URM1_MAIZE7.6e-3368.69Ubiquitin-related modifier 1 homolog OS=Zea mays OX=4577 GN=URM1 PE=3 SV=1[more]
BLAST of Carg11103 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KCT7|A0A0A0KCT7_CUCSA7.4e-4992.23Ubiquitin-related modifier 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_6G075130 ... [more]
tr|A0A1S3CCC7|A0A1S3CCC7_CUCME5.5e-4489.69Ubiquitin-related modifier 1 homolog OS=Cucumis melo OX=3656 GN=LOC103499050 PE=... [more]
tr|B9RDI8|B9RDI8_RICCO5.1e-4284.54Ubiquitin-related modifier 1 homolog OS=Ricinus communis OX=3988 GN=RCOM_1613470... [more]
tr|A0A1J7GNP7|A0A1J7GNP7_LUPAN1.1e-4183.17Ubiquitin-related modifier 1 homolog OS=Lupinus angustifolius OX=3871 GN=TanjilG... [more]
tr|A0A0L9VR89|A0A0L9VR89_PHAAN1.1e-4190.22Ubiquitin-related modifier 1 (Fragment) OS=Phaseolus angularis OX=3914 GN=LR48_V... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0034227tRNA thio-modification
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR016155Mopterin_synth/thiamin_S_b
IPR015221Urm1
IPR012675Beta-grasp_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034227 tRNA thio-modification
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11103-RACarg11103-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012675Beta-grasp domain superfamilyGENE3DG3DSA:3.10.20.30coord: 3..104
e-value: 3.1E-34
score: 119.4
IPR015221Ubiquitin-related modifier 1PIRSFPIRSF037379Urm1coord: 3..104
e-value: 1.2E-36
score: 122.9
IPR015221Ubiquitin-related modifier 1PFAMPF09138Urm1coord: 10..104
e-value: 1.0E-33
score: 115.5
IPR015221Ubiquitin-related modifier 1PANTHERPTHR14986RURM1 PROTEINcoord: 8..104
IPR015221Ubiquitin-related modifier 1HAMAPMF_03048Urm1coord: 4..104
score: 32.915
IPR015221Ubiquitin-related modifier 1CDDcd01764Urm1coord: 13..104
e-value: 3.24185E-36
score: 119.314
IPR016155Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-graspSUPERFAMILYSSF54285MoaD/ThiScoord: 11..104

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg11103Cla006937Watermelon (97103) v1carwmB1079
Carg11103Csa6G075130Cucumber (Chinese Long) v2carcuB1096
Carg11103MELO3C022522Melon (DHL92) v3.5.1carmeB1043
Carg11103ClCG06G000160Watermelon (Charleston Gray)carwcgB1048
Carg11103CSPI06G05590Wild cucumber (PI 183967)carcpiB1118
Carg11103Cucsa.363050Cucumber (Gy14) v1carcgyB1193
Carg11103CmaCh08G009360Cucurbita maxima (Rimu)carcmaB1495
Carg11103CmaCh17G000060Cucurbita maxima (Rimu)carcmaB1488
Carg11103CmoCh08G009050Cucurbita moschata (Rifu)carcmoB1452
Carg11103CmoCh17G000080Cucurbita moschata (Rifu)carcmoB1447
Carg11103Lsi09G019250Bottle gourd (USVL1VR-Ls)carlsiB979
Carg11103Cp4.1LG12g00050Cucurbita pepo (Zucchini)carcpeB1500
Carg11103Cp4.1LG17g02460Cucurbita pepo (Zucchini)carcpeB1503
Carg11103CsGy6G005530Cucumber (Gy14) v2carcgybB1061
Carg11103MELO3C022522.2Melon (DHL92) v3.6.1carmedB1057
Carg11103CsaV3_6G005910Cucumber (Chinese Long) v3carcucB1129
Carg11103Cla97C06G109420Watermelon (97103) v2carwmbB1135
Carg11103BhiUN123G59Wax gourdcarwgoB1272
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg11103Carg10225Silver-seed gourdcarcarB270
The following block(s) are covering this gene:
GeneOrganismBlock
Carg11103Cucurbita pepo (Zucchini)carcpeB1501
Carg11103Wild cucumber (PI 183967)carcpiB1116
Carg11103Cucumber (Chinese Long) v2carcuB1094
Carg11103Cucumber (Chinese Long) v3carcucB1127
Carg11103Watermelon (97103) v1carwmB1076
Carg11103Watermelon (97103) v2carwmbB1132
Carg11103Silver-seed gourdcarcarB267
Carg11103Cucurbita maxima (Rimu)carcmaB1490
Carg11103Cucurbita moschata (Rifu)carcmoB1448