Cp4.1LG16g03300 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g03300
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide (PPR) repeat protein-like
LocationCp4.1LG16 : 5151727 .. 5157233 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCCTTTGTTAACTACTTCAACTGACCTAGTGGAGGGGTATCTGATTTTGCAGATGCGATTTACTTTTGGCGCCTAATGGAGCTCCGCTTATGCCCGCCGCCGTACGTGATTGGGGATAGCGTTCGACTCTTCTCAAAGGCACCTAAACGCTACGACGGCTTCTGCAGTTACCATTTCCGGCCAAATCTGCAGGTCAAATGTGCTACACTCACCAAACAAAGTCACCGATTCCTCTCTACTTTGGCCACAACCGCCGCCGCCGGCGACCATTCAGCTACCAATCGGTTGATTCGGAAGTTTGTTGCGAGTTCTCCGAAATCTATTACTCTCAATGTCCTCTCCGATATCCTTTCCTCTCGCACGGCTCAACCTGGACTCTGCTCTGTTGCTCTCACCGTAAGTAGCGTTTTCTTTTTCTTTTCCCCCTCATTATCGCATCATTCTGCGAGAAGATCGAGATGAAAATTATATTTCCAGGTCTTAGATTTAGGTTTCCTTCTCGTCTACGTAATGGTAAAGTTGAGAACTATTGCGAAATTTGGTCACTGATCTCTTCTGATTCTCTCGTTAAACTGTTCTATCAATTTCCTTATGTTCCTACAGTTATATTCCAGAATTACTGAGACGTCCTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTGTTGCCTTCCTCGATAAAAATGGACAGATTGTTGACTCGGAAACCCTAATTTCCGAGGCAATTTCGAAATTAGGGATTCAAGAAAGGAAGCTTGTGAACTTCTACTGTCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATTTGGTAACGCATATGCTTGTCTTCTTGAGCTTCTTTATAATTCGTCCTCGATTTATGTGAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGGCCTCAGGAAGCTGAGAGTTTGGTAAAAGAAATGAAAGCCAAAGGATTTGCTCCTGCTGCATTTGAATACAGGTCCATTATTTACGCATATGGAACATTGGGGTTGTTTGAAGATATGAAGAGGAGTTTGGAAGAGATGAAGAACGATGATATTGCTTTAGACACAGTTTGTTCTAACATGGTGCTTTCATCATATGGAGCTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAATAATGAAAACTTCTGCTCTTCCTTTCTCGGTTCGGACGTACAATTCTGTCTTGAATTCATGTCCGAAGATTACGTCGATACTACAAGACAAGAGCGGCGATCTTCCAGTGTTGATTGAAGACTTGATCACGGTTCTGGACGGCGATGAGGCTTTGTTGGTTGAAGAGTTGGTTGGTTCATCTGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAGATGAAGTTGGATTTGCATGGAGTACATGTTGGTGCAGCTTATGTGATCATTTTGGAGTGGATGAAGGAGATGAGACTGAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTGTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTCTGATTAGAGAGATTATGTTTCGGACACAAAGTCCGCTGAGAATTGATCGAAAGAACACTGGTTGCTTTCTCGCCAAAGGAAAAGCTGTAAAGAATTGGGTATGTTTGAGATGAATATAACATTGTTTATGTAATGGTTCCTAGTCCACGGCTAGCAAATATTTCTTTGAACTTTTCCTTTCAGACTTCTCCTCAAGGATTTTAAAACGTGTTTGTTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGGTTTCCACACCCTTATAAAAAATGTTTCGTTCTCCTAACCAATCGATGTGGGATCTCACAATCCACCCCCTTCGGAGCCCAGGATTTTCGCTGGCACTCGTTCCCTTCTCCAATCGATGTGGGACCCCCCAATCCACTCCCTTCGGGGCCCAATGTCCTTGCTAGCACACTATCTCGTGTCCACTCCCCTTTGGTCCTCAGCTCCTCGTAGGTACATCGTCATCCTTATTGGCACTCGTTCCCTTCTCCAATCAANCCCTTCTCCAATCGATGTGGGACCCCCCAATCCACTCCCTTCGGGGCCCAATGTCCTTGCTAGCACACTATCTCGTGTCCACTCCCCTTTGGTCCTCAGCTCCTCGTAGGTACATCGTCATCCTTATTGGCACTCGTTCCCTTCTCCAATCAATGAGAGACCCCTCAATCCACTCATTTCGAAACCCAGTGTCCTTGCTGACACACCTTCTCATGTCCACACCCTCCTTCGGGGCTCAGCCTCCTCGTTGGTACATCGTTCGGTGTCTGGCTCTGATACCATTTGTAACCGACCAAGCTCACCTCTAGCAGATATTGTCCTCTTTGAGCTTTCCCATTCGGGCTTTCTCTCAAAGATTTTAAAACGTGTCTACTAGGGAGAAGTTTCCACACGCTTATAAAGAATGTTTCGTTCTCCTCCTCAACCGACGCGGCATCTCATAGCATATATATTTCGAAACATATTGAAGTGATGGAAGAACAGATTCTCAATGTAAGATATAAAGATCAATAAGACATTTTACATGAGCTAATCAACTCAATAACACACACATACAACAGCATATTATCTTGATTTAGTAACAGGAACCAGAAAAATGAAATGGGAATGCAACTAAACAATCCCTTCGAAGTCATAGTCTCATATTGTGAGTTGATTTCCTTGTCTGCCTCACTCAACTTGCAGTGGCTCCCCAAGTAGCTGGAAGCCTAGTAGAGTTCACTGGAGGCAAGGAACAGACGTTGATATTGAGCGGTAGGAGACGATATTGCAGGTCGAGCTCTTGGAAAATTTTAACCAGTTCTTCAACCAAGAAGGCTCTCCTAGTCCACCTCTCTCCCATGTCTTGATGGTTCATTCTGTGAGTAAGCCATATTGCTATTCTCATTCTATTCAATTCTTCTACATCCTTTAGGATAATCAATGGCGCAGGACACCAGTGCTCCTTCTTGCCTTCAATGAAACTGCAGAGACAAAGCAGCATTAGAGAGGTCAGGAAATGAGGGGCTGTCTGCATTTTTATTAAACTGTGTTATCGTTTCTCCACAAACCCTAGTATTCTCTGTCTCATGATGGCAATTTTCTCAGGTGGAGTAGATATGTGAAGACAGAATTCTAAGTCATAGTCTCATATTGTGAGTTGATTTCCTTGTCTGCCTCACTCAACTTGCAGTGGCTCCCCAAGTAGCTGGAAGCCTAGTAGAGTTCACTGGAGGCAAGGAACAGACGTTGATATTGAGCGGTAGGAGACGATATTGCAGGTCGAGCTCTTGGAAAATTTTAACCAGTTCTTCAACCAAGAAGGCTCTCCTAGTCCACCTCTCTCCCATGTCTTGATGGTTCATTCTGTGAGTAAGCCATATTGCTATTCTCATTCTATTCAATTCTTCTACATCCTTTAGGATAATCAATGGCGCAGGACACCAGTGCTCCTTCTTGCCTTCAATGAAACTGCAGAGACAAAGCAGCATTAGAGAGGTCAGGAAATGAGGGGCTGTCTGCATTTTTATTAAACTGTGTTATCGTTTCTCCACAAACCCTAGTATTCTCTGTCTCATGATGGCAATTTTCTCAGGTGGAGTAGATATGTGAAGACAGAATTCTACGGCGTCACCCATGTCGGGACTGCGGTAGTAGTTGTGGATGGCCTTCGTTGCGAGAACGCTATTCGGAAATATGATCTTCTGGTTGTCGAATCGTAGAAAAACGGTCGTCAAAATGTTCATTTCTTCAACAATCATCTGAAATACAAGGATATGCAGTTTAGGACAGAGTATCAGATGGGAATGAATGTAATATTACTTGGAGAAGATGGTTACCTGCACGCCATCGATTTCGCATCGGTCTCCAACATCGAATGGATGCATCACAAATAAGAAGATGATTGCTTCAAAAACAGTCTTGCAAGTATTTCCAAATACAAATGCGACCAGTACAAGCTGAGAGGTTACAAATAGGAGAAACTTGCTGGTGGCTATACCCAGAATCAGTAGCCAAATTACCAGAATAATGACAGAAACTAAAATATTCACCATGCGGTGAAGTTTGTTCACAGCTGTTTTGGTATCGTTCAGTGTCAAAGCTAGTGCCCTCCGTTCTCTAAAGGCATTGACCTGGAACAATTTGATGCGTAATATCATTAGAGCAAGATATTAAACATGTCGAGTGAGAACACTAATGTACTTAGATTTTGATAAAGATAGCCCTTACCACCCAGTTTTTCAAGGATGATTTGCTTATTTTCCTACTCTCAGATGCTCCTTCAAATAGACTCATGGTTTTTGAAGCTTCATCTTCTACCATGAAACGCATCAAGTCCTCTAGGTAGATATATCTAACAGAAGTGGGAAAAGCTGATGAGAAATCAAGATCCAATTACATGTAAAAACACAATAGGAGATGTATTAGCAGCATCAGGGCAGCTTGGTTGGCCAACTTGTAGCATGGATCAAATTAATAGTATAAGCAAGTAAGATGGGTTGGTTTAAAACTAAGTCCAAATTGATGGTGAATCGTTAATGGGAGACGCCGTTTCGAAGTGAATATTCTTTCAATTGACATTAATGCAATTTCCTTGACCATCCTCTCTTGATGGGGCATCTTTTCTCATGATCTTTAGAAAAAGCATTGAAGTTCCTTAAAAATTCCTTCACGAGAAAGTAAAAAAGGGGCAGGTTGTATGAACTGCAAAAAGCATTTAAAGCACTTTCATGGTGTGTAGCACTTACTTGGAACCCTGCGAAGCCACGTTCTGAAAAATCCTCTTAGCAGCAACTTTTGCCTCATACTCACTCTTGATCTGGGTAGTTGATTCATCCTCATGAGCTGAATCCTTTATCTGTTCATCCAAAGTTGAAAGCGCCCCATGTCGGACAATGTTCATCAACCTCTTCATATTCCAAGCAGACACATTCTTAGGACTAAGCCTATGCAAGTGATCAATAGTTATACCCTCATCCCCTTTCTTGGATAGCGCCCGAGAAAGCTTGGCACTCCTTCCACGGGGACTTTTCTGTAGCCCTCCACTCCCTATTACCCTTCCACCCTCTGGACTTGAAAAGGCAGATGCCCTTAGATCAGGAGGAATAGTGGCCCCTGCATTCTGTAACTTCATAACCTCTTCTGC

mRNA sequence

AACCCTTTGTTAACTACTTCAACTGACCTAGTGGAGGGGTATCTGATTTTGCAGATGCGATTTACTTTTGGCGCCTAATGGAGCTCCGCTTATGCCCGCCGCCGTACGTGATTGGGGATAGCGTTCGACTCTTCTCAAAGGCACCTAAACGCTACGACGGCTTCTGCAGTTACCATTTCCGGCCAAATCTGCAGGTCAAATGTGCTACACTCACCAAACAAAGTCACCGATTCCTCTCTACTTTGGCCACAACCGCCGCCGCCGGCGACCATTCAGCTACCAATCGGTTGATTCGGAAGTTTGTTGCGAGTTCTCCGAAATCTATTACTCTCAATGTCCTCTCCGATATCCTTTCCTCTCGCACGGCTCAACCTGGACTCTGCTCTGTTGCTCTCACCTTATATTCCAGAATTACTGAGACGTCCTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTGTTGCCTTCCTCGATAAAAATGGACAGATTGTTGACTCGGAAACCCTAATTTCCGAGGCAATTTCGAAATTAGGGATTCAAGAAAGGAAGCTTGTGAACTTCTACTGTCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATTTGGTAACGCATATGCTTGTCTTCTTGAGCTTCTTTATAATTCGTCCTCGATTTATGTGAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGGCCTCAGGAAGCTGAGAGTTTGGTAAAAGAAATGAAAGCCAAAGGATTTGCTCCTGCTGCATTTGAATACAGGTCCATTATTTACGCATATGGAACATTGGGGTTGTTTGAAGATATGAAGAGGAGTTTGGAAGAGATGAAGAACGATGATATTGCTTTAGACACAGTTTGTTCTAACATGGTGCTTTCATCATATGGAGCTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAATAATGAAAACTTCTGCTCTTCCTTTCTCGGTTCGGACGTACAATTCTGTCTTGAATTCATGTCCGAAGATTACGTCGATACTACAAGACAAGAGCGGCGATCTTCCAGTGTTGATTGAAGACTTGATCACGGTTCTGGACGGCGATGAGGCTTTGTTGGTTGAAGAGTTGGTTGGTTCATCTGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAGATGAAGTTGGATTTGCATGGAGTACATGTTGGTGCAGCTTATGTGATCATTTTGGAGTGGATGAAGGAGATGAGACTGAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTGTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTCTGATTAGAGAGATTATGTTTCGGACACAAAGTCCGCTGAGAATTGATCGAAAGAACACTGTGGCTCCCCAAGTAGCTGGAAGCCTAGTAGAGTTCACTGGAGGCAAGGAACAGACGTTGATATTGAGCGGTAGGAGACGATATTGCAGGATAATCAATGGCGCAGGACACCAGTGCTCCTTCTTGCCTTCAATGAAACTGCAGAGACAAAGCAGCATTAGAGAGGTGGAGTAGATATGTGAAGACAGAATTCTAAGTCATAGTCTCATATTGTGAGTTGATTTCCTTGTCTGCCTCACTCAACTTGCAGTGGCTCCCCAAGTAGCTGGAAGCCTAGTAGAGTTCACTGGAGGCAAGGAACAGACGTTGATATTGAGCGGTAGGAGACGATATTGCAGGTCGAGCTCTTGGAAAATTTTAACCAGTTCTTCAACCAAGAAGGCTCTCCTAGTCCACCTCTCTCCCATGTCTTGATGGTTCATTCTGTGAGTAAGCCATATTGCTATTCTCATTCTATTCAATTCTTCTACATCCTTTAGGATAATCAATGGCGCAGGACACCAGTGCTCCTTCTTGCCTTCAATGAAACTGCAGAGACAAAGCAGCATTAGAGAGGTGGAGTAGATATGTGAAGACAGAATTCTACGGCGTCACCCATGTCGGGACTGCGGTAGTAGTTGTGGATGGCCTTCGTTGCGAGAACGCTATTCGGAAATATGATCTTCTGGTTGTCGAATCGTAGAAAAACGGTCGTCAAAATGTTCATTTCTTCAACAATCATCTGAAATACAAGGATATGCAGTTTAGGACAGAGTATCAGATGGGAATGAATGTAATATTACTTGGAGAAGATGGTTACCTGCACGCCATCGATTTCGCATCGGTCTCCAACATCGAATGGATGCATCACAAATAAGAAGATGATTGCTTCAAAAACAGTCTTGCAAGTATTTCCAAATACAAATGCGACCAGTACAAGCTGAGAGGTTACAAATAGGAGAAACTTGCTGGTGGCTATACCCAGAATCAGTAGCCAAATTACCAGAATAATGACAGAAACTAAAATATTCACCATGCGGTGAAGTTTGTTCACAGCTGTTTTGGTATCGTTCAGTGTCAAAGCTAGTGCCCTCCGTTCTCTAAAGGCATTGACCTGGAACAATTTGATGCGTAATATCATTAGAGCAAGATATTAAACATGTCGAGTGAGAACACTAATGTACTTAGATTTTGATAAAGATAGCCCTTACCACCCAGTTTTTCAAGGATGATTTGCTTATTTTCCTACTCTCAGATGCTCCTTCAAATAGACTCATGGTTTTTGAAGCTTCATCTTCTACCATGAAACGCATCAAGTCCTCTAGGTAGATTTACTTGGAACCCTGCGAAGCCACGTTCTGAAAAATCCTCTTAGCAGCAACTTTTGCCTCATACTCACTCTTGATCTGGGTAGTTGATTCATCCTCATGAGCTGAATCCTTTATCTGTTCATCCAAAGTTGAAAGCGCCCCATGTCGGACAATGTTCATCAACCTCTTCATATTCCAAGCAGACACATTCTTAGGACTAAGCCTATGCAAGTGATCAATAGTTATACCCTCATCCCCTTTCTTGGATAGCGCCCGAGAAAGCTTGGCACTCCTTCCACGGGGACTTTTCTGTAGCCCTCCACTCCCTATTACCCTTCCACCCTCTGGACTTGAAAAGGCAGATGCCCTTAGATCAGGAGGAATAGTGGCCCCTGCATTCTGTAACTTCATAACCTCTTCTGC

Coding sequence (CDS)

ATGGAGCTCCGCTTATGCCCGCCGCCGTACGTGATTGGGGATAGCGTTCGACTCTTCTCAAAGGCACCTAAACGCTACGACGGCTTCTGCAGTTACCATTTCCGGCCAAATCTGCAGGTCAAATGTGCTACACTCACCAAACAAAGTCACCGATTCCTCTCTACTTTGGCCACAACCGCCGCCGCCGGCGACCATTCAGCTACCAATCGGTTGATTCGGAAGTTTGTTGCGAGTTCTCCGAAATCTATTACTCTCAATGTCCTCTCCGATATCCTTTCCTCTCGCACGGCTCAACCTGGACTCTGCTCTGTTGCTCTCACCTTATATTCCAGAATTACTGAGACGTCCTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTGTTGCCTTCCTCGATAAAAATGGACAGATTGTTGACTCGGAAACCCTAATTTCCGAGGCAATTTCGAAATTAGGGATTCAAGAAAGGAAGCTTGTGAACTTCTACTGTCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATTTGGTAACGCATATGCTTGTCTTCTTGAGCTTCTTTATAATTCGTCCTCGATTTATGTGAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGGCCTCAGGAAGCTGAGAGTTTGGTAAAAGAAATGAAAGCCAAAGGATTTGCTCCTGCTGCATTTGAATACAGGTCCATTATTTACGCATATGGAACATTGGGGTTGTTTGAAGATATGAAGAGGAGTTTGGAAGAGATGAAGAACGATGATATTGCTTTAGACACAGTTTGTTCTAACATGGTGCTTTCATCATATGGAGCTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAATAATGAAAACTTCTGCTCTTCCTTTCTCGGTTCGGACGTACAATTCTGTCTTGAATTCATGTCCGAAGATTACGTCGATACTACAAGACAAGAGCGGCGATCTTCCAGTGTTGATTGAAGACTTGATCACGGTTCTGGACGGCGATGAGGCTTTGTTGGTTGAAGAGTTGGTTGGTTCATCTGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAGATGAAGTTGGATTTGCATGGAGTACATGTTGGTGCAGCTTATGTGATCATTTTGGAGTGGATGAAGGAGATGAGACTGAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTGTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTCTGATTAGAGAGATTATGTTTCGGACACAAAGTCCGCTGAGAATTGATCGAAAGAACACTGTGGCTCCCCAAGTAGCTGGAAGCCTAGTAGAGTTCACTGGAGGCAAGGAACAGACGTTGATATTGAGCGGTAGGAGACGATATTGCAGGATAATCAATGGCGCAGGACACCAGTGCTCCTTCTTGCCTTCAATGAAACTGCAGAGACAAAGCAGCATTAGAGAGGTGGAGTAG

Protein sequence

MELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSILQDKSGDLPVLIEDLITVLDGDEALLVEELVGSSVLKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTVAPQVAGSLVEFTGGKEQTLILSGRRRYCRIINGAGHQCSFLPSMKLQRQSSIREVE
Homology
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BLAST of Cp4.1LG16g03300 vs. Swiss-Prot
Match: PP157_ARATH (Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana GN=At2g17033 PE=2 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 1.7e-122
Identity = 225/401 (56.11%), Postives = 294/401 (73.32%), Query Frame = 1 

Query: 45  LTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSV 104
           L K   RFLS+L++ A AGD SA NR I+KFVA+SPKS+ LNVLS +LS +T+ P L   
Sbjct: 89  LMKHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFF 148

Query: 105 ALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYC 164
           AL+LYS ITE SWF WN KL+A+L+A L+K  +  +SETL+S A+S+L   ER    F C
Sbjct: 149 ALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLC 208

Query: 165 QLVESQSKHGSERGFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVK 224
            LVES SK GS +GF  A   L E++  SSS+YVK +AY+SMV+GLC+M +P +AE +++
Sbjct: 209 NLVESNSKQGSIQGFSEASFRLREIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIE 268

Query: 225 EMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHN 284
           EM+ +   P  FEY+S++Y YG LGLF+DM R +  M  +   +DTVCSNMVLSSYGAH+
Sbjct: 269 EMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHD 328

Query: 285 KLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSILQDKSGDLPVLIEDLITVLDGDE 344
            L  M  WLQ +K   +PFS+RTYNSVLNSCP I S+L+D     PV + +L T L+ DE
Sbjct: 329 ALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTIISMLKDLD-SCPVSLSELRTFLNEDE 388

Query: 345 ALLVEELVGSSVLKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPA 404
           ALLV EL  SSVL E + W+A+E KLDLHG+H+ ++Y+I+L+WM E RL+F +E CVIPA
Sbjct: 389 ALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEKCVIPA 448

Query: 405 QVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKN 446
           ++ V+ GSG HS VRGESPVKAL+++IM RT SP+RIDRKN
Sbjct: 449 EIVVVSGSGKHSNVRGESPVKALVKKIMVRTGSPMRIDRKN 488

[Close]
BLAST of Cp4.1LG16g03300 vs. Swiss-Prot
Match: PP217_ARATH (Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-07
Identity = 39/146 (26.71%), Postives = 68/146 (46.58%), Query Frame = 1 

Query: 178 GFGNAYACLLELLYN--SSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAA 237
           GF N      EL Y+       +  RAY  ++ G C   +  +A  L++EMK KGF P  
Sbjct: 566 GFANE---TYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTV 625

Query: 238 FEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQI 297
             Y S+I     +   ++     EE K+  I L+ V  + ++  +G   ++ +  L L+ 
Sbjct: 626 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEE 685

Query: 298 MKTSALPFSVRTYNSVLNSCPKITSI 322
           +    L  ++ T+NS+L++  K   I
Sbjct: 686 LMQKGLTPNLYTWNSLLDALVKAEEI 708

[Close]
BLAST of Cp4.1LG16g03300 vs. Swiss-Prot
Match: PP442_ARATH (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.4e-06
Identity = 45/185 (24.32%), Postives = 80/185 (43.24%), Query Frame = 1 

Query: 129 VAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFGNAYACLLE 188
           +  + K G +  ++ L    I+   I + +    Y  L+E   +   E+     Y  L+E
Sbjct: 354 ICVMSKEGVMEKAKALFDGMIASGLIPQAQA---YASLIEGYCR---EKNVRQGYELLVE 413

Query: 189 LLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRSIIYAYGTL 248
           +     +I +    Y ++V G+CS      A ++VKEM A G  P    Y ++I  +   
Sbjct: 414 M--KKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQN 473

Query: 249 GLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSALPFSVRTY 308
             F D  R L+EMK   IA D  C N ++       ++ +   +L  M  + L  +  TY
Sbjct: 474 SRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTY 530

Query: 309 NSVLN 314
            + ++
Sbjct: 534 GAFIS 530

[Close]
BLAST of Cp4.1LG16g03300 vs. Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.8e-06
Identity = 48/198 (24.24%), Postives = 90/198 (45.45%), Query Frame = 1 

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKL---VNFYCQLVESQSKHGSER 180
           ++ +VA +++ L K G++  +  + +      G+QE      V  Y  L+ + +  G  R
Sbjct: 172 DNSVVAIIISMLGKEGRVSSAANMFN------GLQEDGFSLDVYSYTSLISAFANSGRYR 231

Query: 181 GFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRP-QEAESLVKEMKAKGFAPAAF 240
              N +  + E     + I      Y  ++     M  P  +  SLV++MK+ G AP A+
Sbjct: 232 EAVNVFKKMEEDGCKPTLI-----TYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAY 291

Query: 241 EYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIM 300
            Y ++I       L ++  +  EEMK    + D V  N +L  YG  ++  + +  L  M
Sbjct: 292 TYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEM 351

Query: 301 KTSALPFSVRTYNSVLNS 315
             +    S+ TYNS++++
Sbjct: 352 VLNGFSPSIVTYNSLISA 358

[Close]
BLAST of Cp4.1LG16g03300 vs. TrEMBL
Match: Q5DMV7_CUCME (Pentatricopeptide (PPR) repeat protein-like OS=Cucumis melo GN=PPR PE=4 SV=1)

HSP 1 Score: 705.7 bits (1820), Expect = 4.1e-200
Identity = 367/450 (81.56%), Postives = 401/450 (89.11%), Query Frame = 1 

Query: 1   MELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELRLCPPPYVIGD VRLF +  KR DGF SY F PNLQVKC TLTKQ+HRFLSTL+TT 
Sbjct: 1   MELRLCPPPYVIGDGVRLFLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTG 60

Query: 61  AAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKSITL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFL +NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 181 NAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+ L ELLYNS S+YVKRRAYESMVTGLCSMKRP EAESLVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYGAHNKL DM+LWLQ MKTS+
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSS 300

Query: 301 -LPFSVRTYNSVLNSCPKITSILQD-KSGDLPVLIEDLITVLDGD-EALLVEE-LVGSSV 360
               SVRTYNSVLNSCPKITS+LQD KSGDLPVLIEDLI +LDGD EALLV+E LVGSSV
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHG HVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESNVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNT 447
           IVRGESPVKALI+EIM RT+SPLRIDRKNT
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNT 450

[Close]
BLAST of Cp4.1LG16g03300 vs. TrEMBL
Match: M4R4K5_CUCME (PPR OS=Cucumis melo GN=PPR PE=4 SV=1)

HSP 1 Score: 704.5 bits (1817), Expect = 9.2e-200
Identity = 367/450 (81.56%), Postives = 400/450 (88.89%), Query Frame = 1 

Query: 1   MELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELRLCPPPYVIGD VRL  +  KR DGF SY F PNLQVKC TLTKQ+HRFLSTL+TTA
Sbjct: 1   MELRLCPPPYVIGDGVRLLLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTA 60

Query: 61  AAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKSITL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFL +NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 181 NAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+ L ELLYNS S+YVKRRAYESMVTGLCSMKRP EAESLVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYGAHNKL DM+LWLQ MKTS 
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSP 300

Query: 301 -LPFSVRTYNSVLNSCPKITSILQD-KSGDLPVLIEDLITVLDGD-EALLVEE-LVGSSV 360
               SVRTYNSVLNSCPKITS+LQD KSGDLPVLIEDLI +LDGD EALLV+E LVGSSV
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHG HVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESYVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNT 447
           IVRGESPVKALI+EIM RT+SPLRIDRKNT
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNT 450

[Close]
BLAST of Cp4.1LG16g03300 vs. TrEMBL
Match: M5VLA1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021547mg PE=4 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 1.4e-131
Identity = 245/406 (60.34%), Postives = 316/406 (77.83%), Query Frame = 1 

Query: 40  VKCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQP 99
           ++CA +TKQ  RFL+ LA  A A D   TN+LI KF+ SS KSI LN LS +LS  T  P
Sbjct: 30  IQCA-VTKQGQRFLTKLA--ANARDAKVTNKLIAKFLTSSTKSIALNTLSYLLSPDTTLP 89

Query: 100 GLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKL 159
            L S+AL  YS+ITE SWF WN KLVA LVA LDK GQ  ++E LISE ISKLG +ER+L
Sbjct: 90  HLSSLALPFYSKITEASWFEWNPKLVAALVALLDKQGQHNEAEVLISETISKLGSREREL 149

Query: 160 VNFYCQLVESQSKHGSERGFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEA 219
             F+CQLVES SK  S+ GF ++Y+ L +LL+NSSS+YVK RA+ESMV+GLC M RP+EA
Sbjct: 150 ALFHCQLVESHSKLSSKHGFDSSYSYLYQLLHNSSSVYVKNRAFESMVSGLCEMDRPREA 209

Query: 220 ESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSS 279
           ++L++EM+ +G  P+ FE+RS++Y YG LGLFEDM + +E+M+N  IA+DT+CSNMVLSS
Sbjct: 210 DNLIEEMRVRGLKPSVFEFRSVVYGYGRLGLFEDMLKVVEQMENQGIAIDTICSNMVLSS 269

Query: 280 YGAHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSILQDKSGDLPVLIEDLITV 339
           YGAH++LA M++WL+ MK+ +LPFS+RTYNSVLNSC  I ++LQ+   D P  IE+L  V
Sbjct: 270 YGAHSELAAMLVWLRKMKSLSLPFSIRTYNSVLNSCLTIMAMLQEPK-DFPCSIEELNGV 329

Query: 340 LDGDEALLVEELVGSSVLKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDES 399
           L+GDEALLV+ELV S+VL EVMVW+ +E KLDLHG+H+G+AY+I+LEW + MR +F    
Sbjct: 330 LNGDEALLVKELVESTVLDEVMVWEPLEAKLDLHGMHLGSAYLILLEWFEAMRCRFNSGK 389

Query: 400 CVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKN 446
            VIPA+V VICGSG HS VRGESPVK L++++M R +SP+RIDRKN
Sbjct: 390 DVIPAEVVVICGSGKHSSVRGESPVKGLVKQMMLRMESPMRIDRKN 431

[Close]
BLAST of Cp4.1LG16g03300 vs. TrEMBL
Match: A0A061DXY1_THECC (Pentatricopeptide (PPR) repeat-containing protein, putative OS=Theobroma cacao GN=TCM_006548 PE=4 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 1.3e-129
Identity = 239/419 (57.04%), Postives = 313/419 (74.70%), Query Frame = 1 

Query: 33  HFRPNL-QVKCAT----LTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNV 92
           H RP    +KC +    LTKQ HRF S+LA TA   D +  NRLI+KFVASSPKSI LN 
Sbjct: 17  HLRPTRPSIKCESGGVPLTKQGHRFFSSLAATADVNDPATANRLIKKFVASSPKSIALNA 76

Query: 93  LSDILSSRTAQPGLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISE 152
           LS +LS R + P L ++A  LY++I+ETSW+ WN KLVA+L+A L K G+  +SE LIS+
Sbjct: 77  LSHLLSPRNSHPHLSALAFPLYTKISETSWYNWNPKLVAELIALLVKQGRYDESEALISQ 136

Query: 153 AISKLGIQERKLVNFYCQLVESQSKHGSERGFGNAYACLLELLYNSSSIYVKRRAYESMV 212
           A+SKL  +ER LV FYC  +ES SKH S+ GF +AY  L EL+ NSSS+YVKR+ Y+SMV
Sbjct: 137 AVSKLKFRERDLVQFYCNWIESCSKHNSKEGFNDAYCYLSELICNSSSVYVKRQGYKSMV 196

Query: 213 TGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIA 272
           + LC M RP EAE+LV+EM+  G  P  FE+R I Y YG LGLFEDM+R + EM+ +   
Sbjct: 197 SSLCEMDRPNEAENLVEEMRKNGLTPTLFEFRFISYGYGQLGLFEDMERMVCEMEIEGFE 256

Query: 273 LDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSILQDKSG 332
           +DT+CSNMVLSSYGA+N  + MV WLQ MKT  +PFS+RTYNSVLNSCP+I S++Q    
Sbjct: 257 VDTICSNMVLSSYGAYNAFSKMVPWLQKMKTLQIPFSIRTYNSVLNSCPEIMSLVQGLD- 316

Query: 333 DLPVLIEDLITVLDGDEALLVEELV-GSSVLKEVMVWDAMEMKLDLHGVHVGAAYVIILE 392
            +P+ + +L  +L+ DEALLV+ELV  SSVL E M W+  E KLDLHG+H+G+AY+I+L+
Sbjct: 317 SVPLSLGELAKILNEDEALLVQELVKSSSVLDEAMEWNGSEGKLDLHGMHLGSAYLIMLQ 376

Query: 393 WMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKN 446
           W++EM+ +F+ E CVIPAQ+T++CGSG HS VRGESPVK L+R++M + +SP++IDRKN
Sbjct: 377 WIEEMKCRFKVEECVIPAQITIVCGSGKHSSVRGESPVKTLMRKMMVKMKSPMKIDRKN 434

[Close]
BLAST of Cp4.1LG16g03300 vs. TrEMBL
Match: B9S5H0_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0975970 PE=4 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 1.7e-129
Identity = 234/417 (56.12%), Postives = 310/417 (74.34%), Query Frame = 1 

Query: 41  KCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPG 100
           +CA L+KQ  RFLS+LA     GD  ATNRLI+KFVA+SPKSI L+ LS +L+  ++   
Sbjct: 41  RCAALSKQGQRFLSSLAIATTKGDTVATNRLIKKFVAASPKSIALDALSHLLNPHSSHSH 100

Query: 101 LCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLV 160
           L S+A TLY +I E  WF WN KLVAD+VAFLDK G+  +S TL+S++ISKL ++ER L 
Sbjct: 101 LSSLAFTLYLKIAEARWFQWNPKLVADVVAFLDKQGRYDESATLVSDSISKLQVKERDLA 160

Query: 161 NFYCQLVESQSKHGSERGFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAE 220
            FYC LVESQSK  S RGF N+ A L++L+ NS+S+YVKR+ Y+SMV GLC M RP+EAE
Sbjct: 161 RFYCNLVESQSKQNSIRGFDNSVASLMQLVCNSNSVYVKRQGYKSMVNGLCEMGRPREAE 220

Query: 221 SLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSY 280
           +L++EM  +G  P+ FE++ ++YAYG+LG FE+M + L +M+     +DTVCSNM+L+SY
Sbjct: 221 TLIEEMGKEGVRPSMFEFKCVVYAYGSLGSFEEMNKCLHQMERAGFRVDTVCSNMILASY 280

Query: 281 GAHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSILQDKSGDLPVLIEDLITVL 340
           GAHN L +MVLWLQ MK   +PFS+RT NS LNSCP I S++Q+ S D P+ I DL+ +L
Sbjct: 281 GAHNALPEMVLWLQKMKDLGIPFSLRTCNSALNSCPTIMSMMQN-SNDFPISIHDLMKIL 340

Query: 341 DGDEALLVEELVGSSVLKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESC 400
             DEALLV+E+V SSVL E M WD  E KLDLHG H+ +AY+IIL W++EMR +F+  + 
Sbjct: 341 SEDEALLVKEIVTSSVLDEAMKWDVAEAKLDLHGTHLCSAYLIILLWIEEMRKRFKSVNY 400

Query: 401 VIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTVAPQVAGSLVE 458
           V P ++TV+CGSGNHSIVRGESPVK ++++ M R +SP+RIDR+N       G +VE
Sbjct: 401 VNPTEITVVCGSGNHSIVRGESPVKCMVKDFMVRARSPMRIDRRNIGCFIAKGKVVE 456

[Close]
BLAST of Cp4.1LG16g03300 vs. TAIR10
Match: AT2G17033.2 (AT2G17033.2 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 441.0 bits (1133), Expect = 9.6e-124
Identity = 225/401 (56.11%), Postives = 294/401 (73.32%), Query Frame = 1 

Query: 45  LTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSV 104
           L K   RFLS+L++ A AGD SA NR I+KFVA+SPKS+ LNVLS +LS +T+ P L   
Sbjct: 89  LMKHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFF 148

Query: 105 ALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYC 164
           AL+LYS ITE SWF WN KL+A+L+A L+K  +  +SETL+S A+S+L   ER    F C
Sbjct: 149 ALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLC 208

Query: 165 QLVESQSKHGSERGFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVK 224
            LVES SK GS +GF  A   L E++  SSS+YVK +AY+SMV+GLC+M +P +AE +++
Sbjct: 209 NLVESNSKQGSIQGFSEASFRLREIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIE 268

Query: 225 EMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHN 284
           EM+ +   P  FEY+S++Y YG LGLF+DM R +  M  +   +DTVCSNMVLSSYGAH+
Sbjct: 269 EMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHD 328

Query: 285 KLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSILQDKSGDLPVLIEDLITVLDGDE 344
            L  M  WLQ +K   +PFS+RTYNSVLNSCP I S+L+D     PV + +L T L+ DE
Sbjct: 329 ALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTIISMLKDLD-SCPVSLSELRTFLNEDE 388

Query: 345 ALLVEELVGSSVLKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPA 404
           ALLV EL  SSVL E + W+A+E KLDLHG+H+ ++Y+I+L+WM E RL+F +E CVIPA
Sbjct: 389 ALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEKCVIPA 448

Query: 405 QVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKN 446
           ++ V+ GSG HS VRGESPVKAL+++IM RT SP+RIDRKN
Sbjct: 449 EIVVVSGSGKHSNVRGESPVKALVKKIMVRTGSPMRIDRKN 488

[Close]
BLAST of Cp4.1LG16g03300 vs. TAIR10
Match: AT3G06920.1 (AT3G06920.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 6.0e-09
Identity = 39/146 (26.71%), Postives = 68/146 (46.58%), Query Frame = 1 

Query: 178 GFGNAYACLLELLYN--SSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAA 237
           GF N      EL Y+       +  RAY  ++ G C   +  +A  L++EMK KGF P  
Sbjct: 566 GFANE---TYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTV 625

Query: 238 FEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQI 297
             Y S+I     +   ++     EE K+  I L+ V  + ++  +G   ++ +  L L+ 
Sbjct: 626 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEE 685

Query: 298 MKTSALPFSVRTYNSVLNSCPKITSI 322
           +    L  ++ T+NS+L++  K   I
Sbjct: 686 LMQKGLTPNLYTWNSLLDALVKAEEI 708

[Close]
BLAST of Cp4.1LG16g03300 vs. TAIR10
Match: AT5G61990.1 (AT5G61990.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 1.9e-07
Identity = 45/185 (24.32%), Postives = 80/185 (43.24%), Query Frame = 1 

Query: 129 VAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFGNAYACLLE 188
           +  + K G +  ++ L    I+   I + +    Y  L+E   +   E+     Y  L+E
Sbjct: 354 ICVMSKEGVMEKAKALFDGMIASGLIPQAQA---YASLIEGYCR---EKNVRQGYELLVE 413

Query: 189 LLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRSIIYAYGTL 248
           +     +I +    Y ++V G+CS      A ++VKEM A G  P    Y ++I  +   
Sbjct: 414 M--KKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQN 473

Query: 249 GLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSALPFSVRTY 308
             F D  R L+EMK   IA D  C N ++       ++ +   +L  M  + L  +  TY
Sbjct: 474 SRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTY 530

Query: 309 NSVLN 314
            + ++
Sbjct: 534 GAFIS 530

[Close]
BLAST of Cp4.1LG16g03300 vs. TAIR10
Match: AT5G02860.1 (AT5G02860.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 3.3e-07
Identity = 48/198 (24.24%), Postives = 90/198 (45.45%), Query Frame = 1 

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKL---VNFYCQLVESQSKHGSER 180
           ++ +VA +++ L K G++  +  + +      G+QE      V  Y  L+ + +  G  R
Sbjct: 172 DNSVVAIIISMLGKEGRVSSAANMFN------GLQEDGFSLDVYSYTSLISAFANSGRYR 231

Query: 181 GFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRP-QEAESLVKEMKAKGFAPAAF 240
              N +  + E     + I      Y  ++     M  P  +  SLV++MK+ G AP A+
Sbjct: 232 EAVNVFKKMEEDGCKPTLI-----TYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAY 291

Query: 241 EYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIM 300
            Y ++I       L ++  +  EEMK    + D V  N +L  YG  ++  + +  L  M
Sbjct: 292 TYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEM 351

Query: 301 KTSALPFSVRTYNSVLNS 315
             +    S+ TYNS++++
Sbjct: 352 VLNGFSPSIVTYNSLISA 358

[Close]
BLAST of Cp4.1LG16g03300 vs. TAIR10
Match: AT1G02150.1 (AT1G02150.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 9.6e-07
Identity = 38/125 (30.40%), Postives = 60/125 (48.00%), Query Frame = 1 

Query: 174 GSERGFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAP 233
           G  RG  +A    L+L  N    +  RR Y S++      K  ++AE+L+  M+ KG+A 
Sbjct: 147 GKVRGIPDAEEFFLQLPEN----FKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYAL 206

Query: 234 AAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWL 293
               +  ++  Y  L  ++ +   + EMK  DI LD    N+ LSS G+   +  M L  
Sbjct: 207 HPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVY 266

Query: 294 QIMKT 299
           Q MK+
Sbjct: 267 QQMKS 267

[Close]
BLAST of Cp4.1LG16g03300 vs. NCBI nr
Match: gi|659119236|ref|XP_008459547.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Cucumis melo])

HSP 1 Score: 705.7 bits (1820), Expect = 5.9e-200
Identity = 367/450 (81.56%), Postives = 401/450 (89.11%), Query Frame = 1 

Query: 1   MELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELRLCPPPYVIGD VRLF +  KR DGF SY F PNLQVKC TLTKQ+HRFLSTL+TT 
Sbjct: 1   MELRLCPPPYVIGDGVRLFLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTG 60

Query: 61  AAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKSITL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFL +NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 181 NAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+ L ELLYNS S+YVKRRAYESMVTGLCSMKRP EAESLVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYGAHNKL DM+LWLQ MKTS+
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSS 300

Query: 301 -LPFSVRTYNSVLNSCPKITSILQD-KSGDLPVLIEDLITVLDGD-EALLVEE-LVGSSV 360
               SVRTYNSVLNSCPKITS+LQD KSGDLPVLIEDLI +LDGD EALLV+E LVGSSV
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHG HVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESNVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNT 447
           IVRGESPVKALI+EIM RT+SPLRIDRKNT
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNT 450

[Close]
BLAST of Cp4.1LG16g03300 vs. NCBI nr
Match: gi|469474106|gb|AGH33847.1| (PPR [Cucumis melo])

HSP 1 Score: 704.5 bits (1817), Expect = 1.3e-199
Identity = 367/450 (81.56%), Postives = 400/450 (88.89%), Query Frame = 1 

Query: 1   MELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELRLCPPPYVIGD VRL  +  KR DGF SY F PNLQVKC TLTKQ+HRFLSTL+TTA
Sbjct: 1   MELRLCPPPYVIGDGVRLLLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTA 60

Query: 61  AAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKSITL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFL +NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 181 NAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+ L ELLYNS S+YVKRRAYESMVTGLCSMKRP EAESLVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYGAHNKL DM+LWLQ MKTS 
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSP 300

Query: 301 -LPFSVRTYNSVLNSCPKITSILQD-KSGDLPVLIEDLITVLDGD-EALLVEE-LVGSSV 360
               SVRTYNSVLNSCPKITS+LQD KSGDLPVLIEDLI +LDGD EALLV+E LVGSSV
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHG HVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESYVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNT 447
           IVRGESPVKALI+EIM RT+SPLRIDRKNT
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNT 450

[Close]
BLAST of Cp4.1LG16g03300 vs. NCBI nr
Match: gi|778707816|ref|XP_011656064.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Cucumis sativus])

HSP 1 Score: 693.7 bits (1789), Expect = 2.3e-196
Identity = 364/450 (80.89%), Postives = 398/450 (88.44%), Query Frame = 1 

Query: 1   MELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELRLCPPPYVIGD VRLF    KR   F SY F PNLQVKC +LTKQ+HRFLSTL+TTA
Sbjct: 1   MELRLCPPPYVIGDGVRLFLHPFKRLHAFRSYPFVPNLQVKCTSLTKQTHRFLSTLSTTA 60

Query: 61  AAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKSITL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFLD+NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGF 
Sbjct: 121 NSKLVADLVAFLDQNGLYSESEVLISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFV 180

Query: 181 NAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+ LLELLYNS S+YVKRRAYESMVTGLCSMKRP EAE+LVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLLELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAENLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYGAHNKL DMVLWLQ MKTS 
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMVLWLQRMKTSP 300

Query: 301 -LPFSVRTYNSVLNSCPKITSILQD-KSGDLPVLIEDLITVLDGD-EALLVEELV-GSSV 360
               SVRTYNSVLNSCPKIT++LQD KS +LPVLIEDLI VLDGD EALLVEEL+ GSSV
Sbjct: 301 HCNSSVRTYNSVLNSCPKITAMLQDHKSTNLPVLIEDLIAVLDGDEEALLVEELLAGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHG HVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESYVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNT 447
           IVRGESPVKALI+EIM RT+SPLRIDRKNT
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNT 450

[Close]
BLAST of Cp4.1LG16g03300 vs. NCBI nr
Match: gi|595793963|ref|XP_007200730.1| (hypothetical protein PRUPE_ppa021547mg [Prunus persica])

HSP 1 Score: 478.0 bits (1229), Expect = 2.0e-131
Identity = 245/406 (60.34%), Postives = 316/406 (77.83%), Query Frame = 1 

Query: 40  VKCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQP 99
           ++CA +TKQ  RFL+ LA  A A D   TN+LI KF+ SS KSI LN LS +LS  T  P
Sbjct: 30  IQCA-VTKQGQRFLTKLA--ANARDAKVTNKLIAKFLTSSTKSIALNTLSYLLSPDTTLP 89

Query: 100 GLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKL 159
            L S+AL  YS+ITE SWF WN KLVA LVA LDK GQ  ++E LISE ISKLG +ER+L
Sbjct: 90  HLSSLALPFYSKITEASWFEWNPKLVAALVALLDKQGQHNEAEVLISETISKLGSREREL 149

Query: 160 VNFYCQLVESQSKHGSERGFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEA 219
             F+CQLVES SK  S+ GF ++Y+ L +LL+NSSS+YVK RA+ESMV+GLC M RP+EA
Sbjct: 150 ALFHCQLVESHSKLSSKHGFDSSYSYLYQLLHNSSSVYVKNRAFESMVSGLCEMDRPREA 209

Query: 220 ESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSS 279
           ++L++EM+ +G  P+ FE+RS++Y YG LGLFEDM + +E+M+N  IA+DT+CSNMVLSS
Sbjct: 210 DNLIEEMRVRGLKPSVFEFRSVVYGYGRLGLFEDMLKVVEQMENQGIAIDTICSNMVLSS 269

Query: 280 YGAHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSILQDKSGDLPVLIEDLITV 339
           YGAH++LA M++WL+ MK+ +LPFS+RTYNSVLNSC  I ++LQ+   D P  IE+L  V
Sbjct: 270 YGAHSELAAMLVWLRKMKSLSLPFSIRTYNSVLNSCLTIMAMLQEPK-DFPCSIEELNGV 329

Query: 340 LDGDEALLVEELVGSSVLKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDES 399
           L+GDEALLV+ELV S+VL EVMVW+ +E KLDLHG+H+G+AY+I+LEW + MR +F    
Sbjct: 330 LNGDEALLVKELVESTVLDEVMVWEPLEAKLDLHGMHLGSAYLILLEWFEAMRCRFNSGK 389

Query: 400 CVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKN 446
            VIPA+V VICGSG HS VRGESPVK L++++M R +SP+RIDRKN
Sbjct: 390 DVIPAEVVVICGSGKHSSVRGESPVKGLVKQMMLRMESPMRIDRKN 431

[Close]
BLAST of Cp4.1LG16g03300 vs. NCBI nr
Match: gi|590683980|ref|XP_007041729.1| (Pentatricopeptide (PPR) repeat-containing protein, putative [Theobroma cacao])

HSP 1 Score: 471.5 bits (1212), Expect = 1.9e-129
Identity = 239/419 (57.04%), Postives = 313/419 (74.70%), Query Frame = 1 

Query: 33  HFRPNL-QVKCAT----LTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNV 92
           H RP    +KC +    LTKQ HRF S+LA TA   D +  NRLI+KFVASSPKSI LN 
Sbjct: 17  HLRPTRPSIKCESGGVPLTKQGHRFFSSLAATADVNDPATANRLIKKFVASSPKSIALNA 76

Query: 93  LSDILSSRTAQPGLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISE 152
           LS +LS R + P L ++A  LY++I+ETSW+ WN KLVA+L+A L K G+  +SE LIS+
Sbjct: 77  LSHLLSPRNSHPHLSALAFPLYTKISETSWYNWNPKLVAELIALLVKQGRYDESEALISQ 136

Query: 153 AISKLGIQERKLVNFYCQLVESQSKHGSERGFGNAYACLLELLYNSSSIYVKRRAYESMV 212
           A+SKL  +ER LV FYC  +ES SKH S+ GF +AY  L EL+ NSSS+YVKR+ Y+SMV
Sbjct: 137 AVSKLKFRERDLVQFYCNWIESCSKHNSKEGFNDAYCYLSELICNSSSVYVKRQGYKSMV 196

Query: 213 TGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIA 272
           + LC M RP EAE+LV+EM+  G  P  FE+R I Y YG LGLFEDM+R + EM+ +   
Sbjct: 197 SSLCEMDRPNEAENLVEEMRKNGLTPTLFEFRFISYGYGQLGLFEDMERMVCEMEIEGFE 256

Query: 273 LDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSILQDKSG 332
           +DT+CSNMVLSSYGA+N  + MV WLQ MKT  +PFS+RTYNSVLNSCP+I S++Q    
Sbjct: 257 VDTICSNMVLSSYGAYNAFSKMVPWLQKMKTLQIPFSIRTYNSVLNSCPEIMSLVQGLD- 316

Query: 333 DLPVLIEDLITVLDGDEALLVEELV-GSSVLKEVMVWDAMEMKLDLHGVHVGAAYVIILE 392
            +P+ + +L  +L+ DEALLV+ELV  SSVL E M W+  E KLDLHG+H+G+AY+I+L+
Sbjct: 317 SVPLSLGELAKILNEDEALLVQELVKSSSVLDEAMEWNGSEGKLDLHGMHLGSAYLIMLQ 376

Query: 393 WMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKN 446
           W++EM+ +F+ E CVIPAQ+T++CGSG HS VRGESPVK L+R++M + +SP++IDRKN
Sbjct: 377 WIEEMKCRFKVEECVIPAQITIVCGSGKHSSVRGESPVKTLMRKMMVKMKSPMKIDRKN 434

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g03300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP157_ARATH1.7e-12256.11Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana GN... [more]
PP217_ARATH1.1e-0726.71Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN... [more]
PP442_ARATH3.4e-0624.32Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidop... [more]
PP362_ARATH5.8e-0624.24Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG16g03300 vs. TrEMBL
Match NameE-valueIdentityDescription
Q5DMV7_CUCME4.1e-20081.56Pentatricopeptide (PPR) repeat protein-like OS=Cucumis melo GN=PPR PE=4 SV=1[more]
M4R4K5_CUCME9.2e-20081.56PPR OS=Cucumis melo GN=PPR PE=4 SV=1[more]
M5VLA1_PRUPE1.4e-13160.34Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021547mg PE=4 SV=1[more]
A0A061DXY1_THECC1.3e-12957.04Pentatricopeptide (PPR) repeat-containing protein, putative OS=Theobroma cacao G... [more]
B9S5H0_RICCO1.7e-12956.12Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
BLAST of Cp4.1LG16g03300 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G17033.29.6e-12456.11 pentatricopeptide (PPR) repeat-containing protein[more]
AT3G06920.16.0e-0926.71 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G61990.11.9e-0724.32 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G02860.13.3e-0724.24 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G02150.19.6e-0730.40 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG16g03300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119236|ref|XP_008459547.1|5.9e-20081.56PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Cucumis melo][more]
gi|469474106|gb|AGH33847.1|1.3e-19981.56PPR [Cucumis melo][more]
gi|778707816|ref|XP_011656064.1|2.3e-19680.89PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Cucumis sativu... [more]
gi|595793963|ref|XP_007200730.1|2.0e-13160.34hypothetical protein PRUPE_ppa021547mg [Prunus persica][more]
gi|590683980|ref|XP_007041729.1|1.9e-12957.04Pentatricopeptide (PPR) repeat-containing protein, putative [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR002625Smr_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g03300.1Cp4.1LG16g03300.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002625Smr domainSMARTSM00463SMR_2coord: 367..454
score: 7.3
IPR002625Smr domainPROFILEPS50828SMRcoord: 370..450
score: 12
IPR002625Smr domainunknownSSF160443SMR domain-likecoord: 367..436
score: 6.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 238..265
score: 0.59coord: 202..231
score: 3.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 202..233
score: 3.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 234..268
score: 7.695coord: 269..303
score: 6.095coord: 199..233
score: 1
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 100..479
score: 1.0E-86coord: 47..78
score: 1.0
NoneNo IPR availablePANTHERPTHR24015:SF537SUBFAMILY NOT NAMEDcoord: 47..78
score: 1.0E-86coord: 100..479
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g03300Cla001730Watermelon (97103) v1cpewmB301
Cp4.1LG16g03300Lsi10G008190Bottle gourd (USVL1VR-Ls)cpelsiB226
Cp4.1LG16g03300Bhi10G000927Wax gourdcpewgoB0355
Cp4.1LG16g03300Carg16155Silver-seed gourdcarcpeB0485
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g03300Silver-seed gourdcarcpeB0561
Cp4.1LG16g03300Cucumber (Chinese Long) v3cpecucB0353
Cp4.1LG16g03300Cucumber (Chinese Long) v3cpecucB0367
Cp4.1LG16g03300Cucumber (Chinese Long) v3cpecucB0368
Cp4.1LG16g03300Wax gourdcpewgoB0350
Cp4.1LG16g03300Cucurbita pepo (Zucchini)cpecpeB066
Cp4.1LG16g03300Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG16g03300Cucurbita pepo (Zucchini)cpecpeB290
Cp4.1LG16g03300Cucurbita pepo (Zucchini)cpecpeB318
Cp4.1LG16g03300Cucurbita pepo (Zucchini)cpecpeB304
Cp4.1LG16g03300Cucurbita pepo (Zucchini)cpecpeB323
Cp4.1LG16g03300Cucumber (Gy14) v1cgycpeB0038
Cp4.1LG16g03300Cucumber (Gy14) v1cgycpeB0207
Cp4.1LG16g03300Cucurbita maxima (Rimu)cmacpeB036
Cp4.1LG16g03300Cucurbita maxima (Rimu)cmacpeB123
Cp4.1LG16g03300Cucurbita maxima (Rimu)cmacpeB525
Cp4.1LG16g03300Cucurbita maxima (Rimu)cmacpeB565
Cp4.1LG16g03300Cucurbita maxima (Rimu)cmacpeB621
Cp4.1LG16g03300Cucurbita maxima (Rimu)cmacpeB661
Cp4.1LG16g03300Cucurbita maxima (Rimu)cmacpeB875
Cp4.1LG16g03300Cucurbita moschata (Rifu)cmocpeB011
Cp4.1LG16g03300Cucurbita moschata (Rifu)cmocpeB099
Cp4.1LG16g03300Cucurbita moschata (Rifu)cmocpeB483
Cp4.1LG16g03300Cucurbita moschata (Rifu)cmocpeB517
Cp4.1LG16g03300Cucurbita moschata (Rifu)cmocpeB571
Cp4.1LG16g03300Cucurbita moschata (Rifu)cmocpeB611
Cp4.1LG16g03300Wild cucumber (PI 183967)cpecpiB288
Cp4.1LG16g03300Wild cucumber (PI 183967)cpecpiB300
Cp4.1LG16g03300Cucumber (Chinese Long) v2cpecuB286
Cp4.1LG16g03300Cucumber (Chinese Long) v2cpecuB299
Cp4.1LG16g03300Cucumber (Chinese Long) v2cpecuB300
Cp4.1LG16g03300Bottle gourd (USVL1VR-Ls)cpelsiB230
Cp4.1LG16g03300Bottle gourd (USVL1VR-Ls)cpelsiB231
Cp4.1LG16g03300Bottle gourd (USVL1VR-Ls)cpelsiB232
Cp4.1LG16g03300Bottle gourd (USVL1VR-Ls)cpelsiB244
Cp4.1LG16g03300Watermelon (Charleston Gray)cpewcgB252
Cp4.1LG16g03300Watermelon (Charleston Gray)cpewcgB267
Cp4.1LG16g03300Watermelon (Charleston Gray)cpewcgB271
Cp4.1LG16g03300Watermelon (97103) v1cpewmB282
Cp4.1LG16g03300Watermelon (97103) v1cpewmB304
Cp4.1LG16g03300Watermelon (97103) v1cpewmB305
Cp4.1LG16g03300Melon (DHL92) v3.5.1cpemeB280
Cp4.1LG16g03300Melon (DHL92) v3.5.1cpemeB272
Cp4.1LG16g03300Melon (DHL92) v3.5.1cpemeB274
Cp4.1LG16g03300Cucumber (Gy14) v2cgybcpeB763
Cp4.1LG16g03300Cucumber (Gy14) v2cgybcpeB919
Cp4.1LG16g03300Cucumber (Gy14) v2cgybcpeB920
Cp4.1LG16g03300Melon (DHL92) v3.6.1cpemedB318
Cp4.1LG16g03300Melon (DHL92) v3.6.1cpemedB325