Lsi10G008190 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G008190
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Pentatricopeptide repeat-containing protein, putative
Location	chr10 : 11241346 .. 11246391 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTGTGATTGATAACCACATGAAATCAATGATGAAGGAAGGTGCGACTGATAACCAATGTTAAAGACGATGAAAATGAAGGTACAACTGATAACCAATGTTTGGACTAGTTATGGGTTTTGAAAACTTTCTGAGGAATGGGGACGTTTCTTTGGCAATAATTTTAGAGATGCGGGGTTTTGGAGCAAAAGTTGAAGAAGATGGGTTTGATTTCGGTTGACCATTAAATAGTTTTGTTTGGATTTCGTTTGGGCTAGTTATGCATTGTGGACTTTGGGCTTTTTAGTCTTTTCAAACATTTGGACTTAATTTCGTGCTATATCTTCATTATTATAACAATCAAACCCTAAATATAGCACAAGAGAAAAATAAGGGCTGACAAGACACATAGAAAAATTTTGATGTTTCATTTGGAAAAGTCGCAAAAAAATTTCAAAATCATACAAATAGCAAAACAATTTTTAAAATTAAAAAATTATAATTAACAAACATCCAAATTATCCCCCATACTAAAATTGATAAAACCAAACATCATATACTTAAACAAATTCAGAAAAGCGCAAATACACTACACTATTACGCAAATATACTGTACTATAGCATTACATTTAAATTGAACATCATCAAACACCCTTGCTCGATAGCACCTAAAATTTCCACCAAGCTCCAAAATAATCCTTAATTTAATTGAAACCAACCATAACACAAAAAACAAAACTTTAACAAAAACCATACAAAACAACCTTGATACTCACCTAGATACTGTTGCCCAATTCTTCTTATGGCCACATGACAACAATAGCTATGGTATCTGATAAACGTAGGCAAAAAAACATATCGAGAAAAAACAAAGAGAGAGTGAATGAAAGAGGAAGATCCATGACACTTATCGATGCTACCCTCCGCGATGGAGGTAGTCTTGGCACAAACAACGTGAGGCAATCGATGGATGTGGCGTAATGGCTTGTGGTAAGCTGCAGTCGAGCGGGATGATACAGACGATGACGTTGCTCTTCATGCAAAGGAGGAAACTCGCAAAGGAAGGGAATGGTTGCGGCTTTGTGCGACAATGTAGAAACTTAGGTTTCTTTATTTTTCTTTTTTTAATGTTATTTGAACTTACAAACACTTAATTAAATATAATTTTATATATATATATAGTTGGTGGCTATGTGGGCATTGGTAACCTAAAACTTAGTTTCTTTATTTTTCTTTTTTTTAATGTTATTTTAACTTACAAAAAGTTAATTAAATATATATATATATAGAAGTGAATATTTTCTTTTATATCTTAAATTTTAAATATCTAAATATCCATTTCCATATCTTTTATAAATAATTATTTTCTCCAATAAACTTAATTTTGGTTTTGCAAATTCAAAATCGAAAGAAATACGTTAAACTTCCAAGATTATGAAACTTACCTTCAAAATCTCGAATTCAAAATTTTAAAAACTAAAATATTTTAATTTGATTTATTGTAAATCTAATTTATTAGATCTCAAACATCCATTAAACCTTAAATTAAGCCAAATTTTGATTTTATCCAACCCATCACTTATTCCAAAAACAAATAACAAAAATAAAATCCATAATTAAATTTGAATGGATGGAAAATAGCTATTTAACTACAAAATCTAGATTAGTTAAATCACATAGTTTTGAATCAATCAGGGGAGAAAAAAAGAAGATATTATTTGTTTAATTTGAATCAATTTGTAAGGTAGTTTTCAAAATCTAATTTGAATATTAAAATGACACTCATTTTTTATTTTTGAAACTGAATCTGTTAGATTATAATTTGATTAATTCAGTTATTAATTAAGCTCCCAATTACACTGTATTTATATCCCTACTATTAATCAAGTTGTTCACTTACACTATATTTATATCTAAGTTATTAATCAAGCTCTACACTTATATTGTATTTGTTTTCGAAAATTGGTTATATCAAATCAAATCTTATTTTAAACAGCCCAATTCAAAATTCAAATTGGGTGAAAAATTCGCCCCTTTATCTCTTGAATCTGTTAGGTTGAAATCTCATAACCGACTCTTGCCATTTACACTATATTTCTAACAATTACACTGTATTTGAAAATGTTGTTATTCAACCATACCAGGGACAACTTTGAAATTATAAAAGTGTTTGTCATGTGAGTAGTATGCGTTTTGCCAAAATTCTTATTATTTCCGATTTTTGACAAAAATCAAAAGTACCTCCCGAATTTTGTCATTTCCTCCAATTTCTCTTGTTATTTATGCAAACGAGCTCTATTTTATTAGAGGTTGTTGATTTCTTTTAAAGGGAGTCTCGGTTCTTGAGTGATAGCAGGAACGAGAAAGTTCTTAATGCCTTGTTAATTTATAGGAAATAGACCAAAAGGTTGATTATAAAAATTAATAAGAGATTAATTGAGCTTGGAAGAGAATGTCAATATTTTAGAAAAGTCTCAAACTTATATATTGTTGCATGTTCTTAAAATCTAATTAATTTAAATTACATCTAAAGCATGATATTTGTTCTTAACTTTTTCCTTTGAATATGGCCTCCACTCAATTAGGATTAGGAGTAATGTTAATTTAAATAAAACATCTTTAAAGTTAATTCTCTAGACAACATTATGTAGAAGTAGTTGTAGTACTTAACTAAATTAATGGTCCAATCCTTGCACATTACTCGAACTAAATCACAATATTAAAACTTGACACCGTACAACTTGCGATTTTGCATGATGTAAAATTCACATGAACACTAGTTTGTATGCATTGTCTATATTAGATAGCTAACTTGTGTTCTATTTAACTTGTCACGAACATGATTGACCTCTTTTTTAAGAGTCAGTGAGATTTCATTTTGACCTAACAGAAACACCAAAAACTTGAGACAATATATTGATGAAAAAACCCATTTCCCAAGCCCAAAATGATTTTTGTCCTTACTTTTAAAACTTAAGAATTTTGACCTCTTGCCTACATCATCTTCAAGCAATGGTACAAAATTACCCCCACTTTTGCTTTTCTTCTTCGGTGAGACCATGTGATCAGCTCTGACAAGACCACGCGACCAGATTTGACGAGTCTACTCGACTAGCTTTAGTTGTATTTTCTTCTCTCCCTCGTCTTAGTTTGTGTTGAAGCATGAGAGTAAGGGCTGGAGTGAGAGATTGAGCACCGAAGATCCAGACCGAAGAGCGACATTGTGAGAGAGAAAAAGAGAGGACAGTGATCTATGAGAGAGGAAAGGGAGTGAGAGAACAAGACCAAGAAAGGAGAGGAGAGAGCGAGAGGCCATTTCGTGTGCACAATGGCTTGGTTTTGATCAATTCGGACAAATGTCATTTTCTTTCCCACATTTGGGTCATCCAACCATACACCCAACCCCCAAAAACTTCAATGAGTTGCGAGGCGGGTCTTTGGCTTTGCTGATGCGATTCACTTTCGAAGCTTAATGGAGCTCCGCTTATGTCCACCGCCGTACGTGATCGGAGACGGCGTTACCTTTTCGTGCCAAATCTGCAGGTCAAATGTACTACACTCACCAAACAAAGCCACTGATTCCTCTCTACATTGGCCACAACCGTCGCCACTGGCGACCAATCGCTTGATTCGAAAGTTTGTAGCGAGTTCTCCAAAATCGATAACTCTCAATGTTCTCTCTAGTATCATCTCCCCTCACACAGCTCAACCTGGGCTCTGCTCTGTTGCTCTCACTGTAAGTAGGGCTTTTTTCCCTCTTTATTCCATCATTCTTGCTTGGTTTCCGAGAACATCGAGATGCAAAATTGTTTTTCCACATCTTAAAGTTGAGAATTCATACAAAATTTGATTAATGATCTCTTCCGATTCCGTCGTTGAATTTCTCAATCAATTCCCCTATGTTCATGCAGTTGTATTCTAGAATTACTGAAGCGCCTTGGTTCACATGGAATTCGAAGCTAGTTGCTGACCTTATTGCCTTCCTCGATCAAAATGGATTGTACAGTGAGTCGGAAGCCCTAATTTCCGAGACAATTTCGAAGTTAGGGTTTCAAGAAAGAAAACTTGTGAATTTCTACTCCCAGCTGGTTGAATCTCTATCCAAACACGGTTTAGAAAGAGGATTTGGTAACTCCTATGCTCACCTTCTTGAGCTTCTTTATAATTCGTCCTCTGTTTATGTTAAACGTCGAGCTTATGAATCTATGGTTACTGGTTTGTGCTCCATGAAAAGACCTCAGGAAGCTGAGACTTTGGTGAAAGAAATGAGGAGCAAAGGAATTTTGCCTTCTGCATATGAATATAGGTCCATTATTTATGCCTATGGAACATTGGGATTGTTTGAAGATATGAAGAGAAGCTTAAAACAGATGGAGAATGACGATAATGCGTTGGATACAATTTTTTCCAACATGGTGCTTTCATCGTATGGAGCTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAAGAATGAAAACTTCCGCGCTTTGTAATTTCTCTGTTCGGACTTACAATTTTGTCTTGAATTCATGTCCGAAGATTACATCAATGCTGCAAGATCACAAGAGCGACGAGTTTCCCGTTTTGATTGAAGACTTAATCGAGGTTCTGGACGGTGATGAGGAGGCTTTGTTGGTTGAAGAGTTGGTGGTTGGTTCATCTATTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAATTGAAGTTGAATTTGCATGGAGCACATGTTGGTGCAGCTTATGTGATCATGTTACAGTGGATGAAGGAGATGAGACTAAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTCTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTTTGATTAAAGAGATTATGGTTCGAACAGAAAGTCCGCTGAGAATCGATCGAAAGAACACCGGTTGCTTCATCTCAAAAGGAAAAGCTGTAAAGAATTGTTTATGTTCACTAGCAGAAAAGAAGGATATTGTAGCTAATAGAAAATGCTATAATAGGCCTTTTACACGCTATGAAAGCGCATAA

mRNA sequence

ATGAAGTTTGTGTTGAAGCATGAGAGTAAGGGCTGGAGTGAGAGATTGAGCACCGAAGATCCAGACCGAAGAGCGACATTCTTAATGGAGCTCCGCTTATGTCCACCGCCGTACGTGATCGGAGACGGCGTTACCTTTTCGTGCCAAATCTGCAGGTCAAATGTACTACACTCACCAAACAAAGCCACTGATTCCTCTCTACATTGGCCACAACCGTCGCCACTGGCGACCAATCGCTTGATTCGAAAGTTTGTAGCGAGTTCTCCAAAATCGATAACTCTCAATGTTCTCTCTAGTATCATCTCCCCTCACACAGCTCAACCTGGGCTCTGCTCTGTTGCTCTCACTTTGTATTCTAGAATTACTGAAGCGCCTTGGTTCACATGGAATTCGAAGCTAGTTGCTGACCTTATTGCCTTCCTCGATCAAAATGGATTGTACAGTGAGTCGGAAGCCCTAATTTCCGAGACAATTTCGAAGTTAGGGTTTCAAGAAAGAAAACTTGTGAATTTCTACTCCCAGCTGGTTGAATCTCTATCCAAACACGGTTTAGAAAGAGGATTTGGTAACTCCTATGCTCACCTTCTTGAGCTTCTTTATAATTCGTCCTCTGTTTATGTTAAACGTCGAGCTTATGAATCTATGGTTACTGGTTTGTGCTCCATGAAAAGACCTCAGGAAGCTGAGACTTTGGTGAAAGAAATGAGGAGCAAAGGAATTTTGCCTTCTGCATATGAATATAGGTCCATTATTTATGCCTATGGAACATTGGGATTGTTTGAAGATATGAAGAGAAGCTTAAAACAGATGGAGAATGACGATAATGCGTTGGATACAATTTTTTCCAACATGGTGCTTTCATCGTATGGAGCTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAAGAATGAAAACTTCCGCGCTTTGTAATTTCTCTGTTCGGACTTACAATTTTGTCTTGAATTCATGTCCGAAGATTACATCAATGCTGCAAGATCACAAGAGCGACGAGTTTCCCGTTTTGATTGAAGACTTAATCGAGGTTCTGGACGGTGATGAGGAGGCTTTGTTGGTTGAAGAGTTGGTGGTTGGTTCATCTATTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAATTGAAGTTGAATTTGCATGGAGCACATGTTGGTGCAGCTTATGTGATCATGTTACAGTGGATGAAGGAGATGAGACTAAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTCTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTTTGATTAAAGAGATTATGGTTCGAACAGAAAGTCCGCTGAGAATCGATCGAAAGAACACCGGTTGCTTCATCTCAAAAGGAAAAGCTGTAAAGAATTGTTTATGTTCACTAGCAGAAAAGAAGGATATTGTAGCTAATAGAAAATGCTATAATAGGCCTTTTACACGCTATGAAAGCGCATAA

Coding sequence (CDS)

ATGAAGTTTGTGTTGAAGCATGAGAGTAAGGGCTGGAGTGAGAGATTGAGCACCGAAGATCCAGACCGAAGAGCGACATTCTTAATGGAGCTCCGCTTATGTCCACCGCCGTACGTGATCGGAGACGGCGTTACCTTTTCGTGCCAAATCTGCAGGTCAAATGTACTACACTCACCAAACAAAGCCACTGATTCCTCTCTACATTGGCCACAACCGTCGCCACTGGCGACCAATCGCTTGATTCGAAAGTTTGTAGCGAGTTCTCCAAAATCGATAACTCTCAATGTTCTCTCTAGTATCATCTCCCCTCACACAGCTCAACCTGGGCTCTGCTCTGTTGCTCTCACTTTGTATTCTAGAATTACTGAAGCGCCTTGGTTCACATGGAATTCGAAGCTAGTTGCTGACCTTATTGCCTTCCTCGATCAAAATGGATTGTACAGTGAGTCGGAAGCCCTAATTTCCGAGACAATTTCGAAGTTAGGGTTTCAAGAAAGAAAACTTGTGAATTTCTACTCCCAGCTGGTTGAATCTCTATCCAAACACGGTTTAGAAAGAGGATTTGGTAACTCCTATGCTCACCTTCTTGAGCTTCTTTATAATTCGTCCTCTGTTTATGTTAAACGTCGAGCTTATGAATCTATGGTTACTGGTTTGTGCTCCATGAAAAGACCTCAGGAAGCTGAGACTTTGGTGAAAGAAATGAGGAGCAAAGGAATTTTGCCTTCTGCATATGAATATAGGTCCATTATTTATGCCTATGGAACATTGGGATTGTTTGAAGATATGAAGAGAAGCTTAAAACAGATGGAGAATGACGATAATGCGTTGGATACAATTTTTTCCAACATGGTGCTTTCATCGTATGGAGCTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAAGAATGAAAACTTCCGCGCTTTGTAATTTCTCTGTTCGGACTTACAATTTTGTCTTGAATTCATGTCCGAAGATTACATCAATGCTGCAAGATCACAAGAGCGACGAGTTTCCCGTTTTGATTGAAGACTTAATCGAGGTTCTGGACGGTGATGAGGAGGCTTTGTTGGTTGAAGAGTTGGTGGTTGGTTCATCTATTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAATTGAAGTTGAATTTGCATGGAGCACATGTTGGTGCAGCTTATGTGATCATGTTACAGTGGATGAAGGAGATGAGACTAAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTCTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTTTGATTAAAGAGATTATGGTTCGAACAGAAAGTCCGCTGAGAATCGATCGAAAGAACACCGGTTGCTTCATCTCAAAAGGAAAAGCTGTAAAGAATTGTTTATGTTCACTAGCAGAAAAGAAGGATATTGTAGCTAATAGAAAATGCTATAATAGGCCTTTTACACGCTATGAAAGCGCATAA

Protein sequence

MKFVLKHESKGWSERLSTEDPDRRATFLMELRLCPPPYVIGDGVTFSCQICRSNVLHSPNKATDSSLHWPQPSPLATNRLIRKFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTWNSKLVADLIAFLDQNGLYSESEALISETISKLGFQERKLVNFYSQLVESLSKHGLERGFGNSYAHLLELLYNSSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRSIIYAYGTLGLFEDMKRSLKQMENDDNALDTIFSNMVLSSYGAHNKLADMVLWLQRMKTSALCNFSVRTYNFVLNSCPKITSMLQDHKSDEFPVLIEDLIEVLDGDEEALLVEELVVGSSILKEVMVWDAMELKLNLHGAHVGAAYVIMLQWMKEMRLKFEDESCVIPAQVTVISGSGNHSIVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNCLCSLAEKKDIVANRKCYNRPFTRYESA

Homology

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BLAST of Lsi10G008190 vs. Swiss-Prot
Match: PP157_ARATH (Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana GN=At2g17033 PE=2 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 5.8e-115
Identity = 219/401 (54.61%), Postives = 289/401 (72.07%), Query Frame = 1


Query: 74  PLATNRLIRKFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTWNSKL 133
           P A NR I+KFVA+SPKS+ LNVLS ++S  T+ P L   AL+LYS ITEA WF WN KL
Sbjct: 109 PSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFFALSLYSEITEASWFDWNPKL 168

Query: 134 VADLIAFLDQNGLYSESEALISETISKLGFQERKLVNFYSQLVESLSKHGLERGFGNSYA 193
           +A+LIA L++   + ESE L+S  +S+L   ER    F   LVES SK G  +GF  +  
Sbjct: 169 IAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLCNLVESNSKQGSIQGFSEASF 228

Query: 194 HLLELLYNSSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRSIIYA 253
            L E++  SSSVYVK +AY+SMV+GLC+M +P +AE +++EMR + I P  +EY+S++Y 
Sbjct: 229 RLREIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIEEMRMEKIKPGLFEYKSVLYG 288

Query: 254 YGTLGLFEDMKRSLKQMENDDNALDTIFSNMVLSSYGAHNKLADMVLWLQRMKTSALCNF 313
           YG LGLF+DM R + +M  + + +DT+ SNMVLSSYGAH+ L  M  WLQ++K   +  F
Sbjct: 289 YGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHDALPQMGSWLQKLKGFNV-PF 348

Query: 314 SVRTYNFVLNSCPKITSMLQDHKSDEFPVLIEDLIEVLDGDEEALLVEELVVGSSILKEV 373
           S+RTYN VLNSCP I SML+D   D  PV + +L   L+ ++EALLV EL   SS+L E 
Sbjct: 349 SIRTYNSVLNSCPTIISMLKD--LDSCPVSLSELRTFLN-EDEALLVHEL-TQSSVLDEA 408

Query: 374 MVWDAMELKLNLHGAHVGAAYVIMLQWMKEMRLKFEDESCVIPAQVTVISGSGNHSIVRG 433
           + W+A+E KL+LHG H+ ++Y+I+LQWM E RL+F +E CVIPA++ V+SGSG HS VRG
Sbjct: 409 IEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEKCVIPAEIVVVSGSGKHSNVRG 468

Query: 434 ESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNCLC 475
           ESPVKAL+K+IMVRT SP+RIDRKN G FI+KGK VK  LC
Sbjct: 469 ESPVKALVKKIMVRTGSPMRIDRKNVGSFIAKGKTVKEWLC 504

[Close]

BLAST of Lsi10G008190 vs. Swiss-Prot
Match: PP424_ARATH (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 3.6e-08
Identity = 64/255 (25.10%), Postives = 119/255 (46.67%), Query Frame = 1


Query: 76  ATNRLIRKFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTWNSKLVA 135
           AT  +I K    S K +   VL S+    TA       A+ ++  + E  W+  N  +  
Sbjct: 98  ATKSIIEK-KKGSKKLLPRTVLESLHERITALRW--ESAIQVFELLREQLWYKPNVGIYV 157

Query: 136 DLIAFLDQNGLYSESEALISETISKLGFQERKLVNF--YSQLVESLSKHGLERGFGNSYA 195
            LI  L +     ++  L  E I+     E  +VN   Y+ LV + S+ G    F  ++ 
Sbjct: 158 KLIVMLGKCKQPEKAHELFQEMIN-----EGCVVNHEVYTALVSAYSRSGR---FDAAFT 217

Query: 196 HLLELLYNSSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRSIIYA 255
            LLE + +S +       Y  ++     +    + + L+ +MR +GI P+   Y ++I A
Sbjct: 218 -LLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDA 277

Query: 256 YGTLGLFEDMKRSLKQMENDDNAL-DTIFSNMVLSSYGAHNKLADMVLWLQRMKTSALCN 315
           YG   +F +M+ +L QM  +D+   D+   N  L ++G + ++  M    ++ ++S +  
Sbjct: 278 YGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGI-E 337

Query: 316 FSVRTYNFVLNSCPK 328
            ++RT+N +L+S  K
Sbjct: 338 PNIRTFNILLDSYGK 339

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BLAST of Lsi10G008190 vs. Swiss-Prot
Match: PP279_ARATH (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-06
Identity = 57/247 (23.08%), Postives = 105/247 (42.51%), Query Frame = 1


Query: 83  KFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTWNSKLVADLIAFLD 142
           K++   PK++ L  L   I  +  Q      AL +++ + +  W+    K    L   L 
Sbjct: 52  KYLTLWPKAV-LEALDEAIKENRWQS-----ALKIFNLLRKQHWYEPRCKTYTKLFKVLG 111

Query: 143 QNGLYSESEALISETISKLGFQERKLVNFYSQLVESLSKHGL-ERGFGNSYAHLLELLYN 202
            N    +  +L+ E +   G   +  ++ Y+ L+    K  L ++ F       LE + +
Sbjct: 112 -NCKQPDQASLLFEVMLSEGL--KPTIDVYTSLISVYGKSELLDKAFST-----LEYMKS 171

Query: 203 SSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRSIIYAYGTLGLFE 262
            S        +  +++  C + R    +++V EM   G+  S   Y +II  YG  G+FE
Sbjct: 172 VSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFE 231

Query: 263 DMKRSLKQM-ENDDNALDTIFSNMVLSSYGAHNKLADMVLWLQRMKTSALCNFSVRTYNF 322
           +M+  L  M E+ D+  D    N ++ SYG    +  M  W  R +   +    + T+N 
Sbjct: 232 EMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGV-QPDITTFNI 283

Query: 323 VLNSCPK 328
           ++ S  K
Sbjct: 292 LILSFGK 283

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BLAST of Lsi10G008190 vs. TrEMBL
Match: Q5DMV7_CUCME (Pentatricopeptide (PPR) repeat protein-like OS=Cucumis melo GN=PPR PE=4 SV=1)

HSP 1 Score: 724.5 bits (1869), Expect = 8.5e-206
Identity = 379/484 (78.31%), Postives = 404/484 (83.47%), Query Frame = 1


Query: 29  MELRLCPPPYVIGDGVTFSCQ-------------------ICRSNVLHSPNKATDSSLHW 88
           MELRLCPPPYVIGDGV    Q                    C +    +    +  S   
Sbjct: 1   MELRLCPPPYVIGDGVRLFLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTG 60

Query: 89  PQPSPLATNRLIRKFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTW 148
                 ATNRLIRKFVASSPKSITL+VLS+I+S HT QP LCS ALTLYSRITEA WFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 149 NSKLVADLIAFLDQNGLYSESEALISETISKLGFQERKLVNFYSQLVESLSKHGLERGFG 208
           NSKLVADL+AFL QNGLYSESEALISE ISKLG QERKLVNFYSQLVES SKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 209 NSYAHLLELLYNSSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRS 268
           +SY+ L ELLYNS SVYVKRRAYESMVTGLCSMKRP EAE+LVKEMRSKGI P+AYEYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 269 IIYAYGTLGLFEDMKRSLKQMENDDNALDTIFSNMVLSSYGAHNKLADMVLWLQRMKTSA 328
           IIYAYGTLGLFE+MKRSLKQMEND+  LDT+ SNMVLSSYGAHNKL DM+LWLQRMKTS+
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSS 300

Query: 329 LCNFSVRTYNFVLNSCPKITSMLQDHKSDEFPVLIEDLIEVLDGDEEALLVEELVVGSSI 388
            C  SVRTYN VLNSCPKITSMLQDHKS + PVLIEDLI +LDGDEEALLV+EL+VGSS+
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 389 LKEVMVWDAMELKLNLHGAHVGAAYVIMLQWMKEMRLKFEDESCVIPAQVTVISGSGNHS 448
           L E+MVWDAMELKL+LHGAHVGAAYVIMLQW+KEMRL FEDES VIPAQVT+I GSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESNVIPAQVTLICGSGKHS 420

Query: 449 IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNCLCSLAEKKDIVANRKCY 494
           IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKN LCSL  KKD VANRKCY
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNWLCSLPGKKDTVANRKCY 480

[Close]

BLAST of Lsi10G008190 vs. TrEMBL
Match: M4R4K5_CUCME (PPR OS=Cucumis melo GN=PPR PE=4 SV=1)

HSP 1 Score: 704.9 bits (1818), Expect = 7.0e-200
Identity = 360/418 (86.12%), Postives = 381/418 (91.15%), Query Frame = 1


Query: 76  ATNRLIRKFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTWNSKLVA 135
           ATNRLIRKFVASSPKSITL+VLS+I+S HT QP LCS ALTLYSRITEA WFTWNSKLVA
Sbjct: 67  ATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTWNSKLVA 126

Query: 136 DLIAFLDQNGLYSESEALISETISKLGFQERKLVNFYSQLVESLSKHGLERGFGNSYAHL 195
           DL+AFL QNGLYSESEALISE ISKLG QERKLVNFYSQLVES SKHG ERGFG+SY+ L
Sbjct: 127 DLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFGDSYSRL 186

Query: 196 LELLYNSSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRSIIYAYG 255
            ELLYNS SVYVKRRAYESMVTGLCSMKRP EAE+LVKEMRSKGI P+AYEYRSIIYAYG
Sbjct: 187 FELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRSIIYAYG 246

Query: 256 TLGLFEDMKRSLKQMENDDNALDTIFSNMVLSSYGAHNKLADMVLWLQRMKTSALCNFSV 315
           TLGLFE+MKRSLKQMEND+  LDT+ SNMVLSSYGAHNKL DM+LWLQRMKTS  C  SV
Sbjct: 247 TLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSPHCKSSV 306

Query: 316 RTYNFVLNSCPKITSMLQDHKSDEFPVLIEDLIEVLDGDEEALLVEELVVGSSILKEVMV 375
           RTYN VLNSCPKITSMLQDHKS + PVLIEDLI +LDGDEEALLV+EL+VGSS+L E+MV
Sbjct: 307 RTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSVLNEIMV 366

Query: 376 WDAMELKLNLHGAHVGAAYVIMLQWMKEMRLKFEDESCVIPAQVTVISGSGNHSIVRGES 435
           WDAMELKL+LHGAHVGAAYVIMLQW+KEMRL FEDES VIPAQVT+I GSG HSIVRGES
Sbjct: 367 WDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESYVIPAQVTLICGSGKHSIVRGES 426

Query: 436 PVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNCLCSLAEKKDIVANRKCYNRPF 494
           PVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKN LCSL  KKD VANRKCY RPF
Sbjct: 427 PVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNWLCSLPGKKDTVANRKCYKRPF 484

[Close]

BLAST of Lsi10G008190 vs. TrEMBL
Match: M5VLA1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021547mg PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 2.1e-127
Identity = 240/398 (60.30%), Postives = 313/398 (78.64%), Query Frame = 1


Query: 77  TNRLIRKFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTWNSKLVAD 136
           TN+LI KF+ SS KSI LN LS ++SP T  P L S+AL  YS+ITEA WF WN KLVA 
Sbjct: 55  TNKLIAKFLTSSTKSIALNTLSYLLSPDTTLPHLSSLALPFYSKITEASWFEWNPKLVAA 114

Query: 137 LIAFLDQNGLYSESEALISETISKLGFQERKLVNFYSQLVESLSKHGLERGFGNSYAHLL 196
           L+A LD+ G ++E+E LISETISKLG +ER+L  F+ QLVES SK   + GF +SY++L 
Sbjct: 115 LVALLDKQGQHNEAEVLISETISKLGSRERELALFHCQLVESHSKLSSKHGFDSSYSYLY 174

Query: 197 ELLYNSSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRSIIYAYGT 256
           +LL+NSSSVYVK RA+ESMV+GLC M RP+EA+ L++EMR +G+ PS +E+RS++Y YG 
Sbjct: 175 QLLHNSSSVYVKNRAFESMVSGLCEMDRPREADNLIEEMRVRGLKPSVFEFRSVVYGYGR 234

Query: 257 LGLFEDMKRSLKQMENDDNALDTIFSNMVLSSYGAHNKLADMVLWLQRMKTSALCNFSVR 316
           LGLFEDM + ++QMEN   A+DTI SNMVLSSYGAH++LA M++WL++MK+ +L  FS+R
Sbjct: 235 LGLFEDMLKVVEQMENQGIAIDTICSNMVLSSYGAHSELAAMLVWLRKMKSLSL-PFSIR 294

Query: 317 TYNFVLNSCPKITSMLQDHKSDEFPVLIEDLIEVLDGDEEALLVEELVVGSSILKEVMVW 376
           TYN VLNSC  I +MLQ+ K  +FP  IE+L  VL+GD EALLV+EL V S++L EVMVW
Sbjct: 295 TYNSVLNSCLTIMAMLQEPK--DFPCSIEELNGVLNGD-EALLVKEL-VESTVLDEVMVW 354

Query: 377 DAMELKLNLHGAHVGAAYVIMLQWMKEMRLKFEDESCVIPAQVTVISGSGNHSIVRGESP 436
           + +E KL+LHG H+G+AY+I+L+W + MR +F     VIPA+V VI GSG HS VRGESP
Sbjct: 355 EPLEAKLDLHGMHLGSAYLILLEWFEAMRCRFNSGKDVIPAEVVVICGSGKHSSVRGESP 414

Query: 437 VKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNCLC 475
           VK L+K++M+R ESP+RIDRKN GCF++KG+AVK+ LC
Sbjct: 415 VKGLVKQMMLRMESPMRIDRKNVGCFVAKGRAVKDWLC 447

[Close]

BLAST of Lsi10G008190 vs. TrEMBL
Match: V4S5V9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028424mg PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 2.1e-124
Identity = 235/399 (58.90%), Postives = 301/399 (75.44%), Query Frame = 1


Query: 76  ATNRLIRKFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTWNSKLVA 135
           A +RLI KFVASSP+ I LN LS ++SP T  P L S+A  LY RITE  WF WN KLVA
Sbjct: 56  AASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVA 115

Query: 136 DLIAFLDQNGLYSESEALISETISKLGFQERKLVNFYSQLVESLSKHGLERGFGNSYAHL 195
           ++IAFLD+ G   E+E LI ET+SKLG +ER+LV FY  L++S  KH  +RGF ++YA L
Sbjct: 116 EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175

Query: 196 LELLYNSSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRSIIYAYG 255
            +L+ +SSSVYVKR+A +SM++GLC M +P EAE L++EMR KG+ PS +EY+ IIY YG
Sbjct: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235

Query: 256 TLGLFEDMKRSLKQMENDDNALDTIFSNMVLSSYGAHNKLADMVLWLQRMKTSALCNFSV 315
            LGL EDM+R + QME+D   +DT+ SNMVLSSYG HN+L+ MVLWLQ+MK S +  FSV
Sbjct: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI-PFSV 295

Query: 316 RTYNFVLNSCPKITSMLQDHKSDEFPVLIEDLIEVLDGDEEALLVEELVVGSSILKEVMV 375
           RTYN VLNSC  I SMLQD  S++FP+ I +L EVL+ +EE  +V+EL   SS+L E M 
Sbjct: 296 RTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLN-EEEVSVVKEL-EDSSVLDEAMK 355

Query: 376 WDAMELKLNLHGAHVGAAYVIMLQWMKEMRLKFEDESCVIPAQVTVISGSGNHSIVRGES 435
           WD+ E KL+LHG H+G+AY I+LQWM EMR +F +E  VIPA++TV+ GSG HS VRGES
Sbjct: 356 WDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGES 415

Query: 436 PVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNCLC 475
            VKA++K++MVRT SP+R+ R N GCFI+KG  VK+ LC
Sbjct: 416 SVKAMVKKMMVRTSSPMRVHRNNIGCFIAKGHVVKDWLC 451

[Close]

BLAST of Lsi10G008190 vs. TrEMBL
Match: A0A061DXY1_THECC (Pentatricopeptide (PPR) repeat-containing protein, putative OS=Theobroma cacao GN=TCM_006548 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 1.8e-123
Identity = 228/400 (57.00%), Postives = 301/400 (75.25%), Query Frame = 1


Query: 74  PLATNRLIRKFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTWNSKL 133
           P   NRLI+KFVASSPKSI LN LS ++SP  + P L ++A  LY++I+E  W+ WN KL
Sbjct: 54  PATANRLIKKFVASSPKSIALNALSHLLSPRNSHPHLSALAFPLYTKISETSWYNWNPKL 113

Query: 134 VADLIAFLDQNGLYSESEALISETISKLGFQERKLVNFYSQLVESLSKHGLERGFGNSYA 193
           VA+LIA L + G Y ESEALIS+ +SKL F+ER LV FY   +ES SKH  + GF ++Y 
Sbjct: 114 VAELIALLVKQGRYDESEALISQAVSKLKFRERDLVQFYCNWIESCSKHNSKEGFNDAYC 173

Query: 194 HLLELLYNSSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRSIIYA 253
           +L EL+ NSSSVYVKR+ Y+SMV+ LC M RP EAE LV+EMR  G+ P+ +E+R I Y 
Sbjct: 174 YLSELICNSSSVYVKRQGYKSMVSSLCEMDRPNEAENLVEEMRKNGLTPTLFEFRFISYG 233

Query: 254 YGTLGLFEDMKRSLKQMENDDNALDTIFSNMVLSSYGAHNKLADMVLWLQRMKTSALCNF 313
           YG LGLFEDM+R + +ME +   +DTI SNMVLSSYGA+N  + MV WLQ+MKT  +  F
Sbjct: 234 YGQLGLFEDMERMVCEMEIEGFEVDTICSNMVLSSYGAYNAFSKMVPWLQKMKTLQI-PF 293

Query: 314 SVRTYNFVLNSCPKITSMLQDHKSDEFPVLIEDLIEVLDGDEEALLVEELVVGSSILKEV 373
           S+RTYN VLNSCP+I S++Q    D  P+ + +L ++L+ DE ALLV+ELV  SS+L E 
Sbjct: 294 SIRTYNSVLNSCPEIMSLVQG--LDSVPLSLGELAKILNEDE-ALLVQELVKSSSVLDEA 353

Query: 374 MVWDAMELKLNLHGAHVGAAYVIMLQWMKEMRLKFEDESCVIPAQVTVISGSGNHSIVRG 433
           M W+  E KL+LHG H+G+AY+IMLQW++EM+ +F+ E CVIPAQ+T++ GSG HS VRG
Sbjct: 354 MEWNGSEGKLDLHGMHLGSAYLIMLQWIEEMKCRFKVEECVIPAQITIVCGSGKHSSVRG 413

Query: 434 ESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNCL 474
           ESPVK L++++MV+ +SP++IDRKN GCFI+KG+ VKN L
Sbjct: 414 ESPVKTLMRKMMVKMKSPMKIDRKNIGCFIAKGQVVKNWL 449

[Close]

BLAST of Lsi10G008190 vs. TAIR10
Match: AT2G17033.2 (AT2G17033.2 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 416.0 bits (1068), Expect = 3.3e-116
Identity = 219/401 (54.61%), Postives = 289/401 (72.07%), Query Frame = 1


Query: 74  PLATNRLIRKFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTWNSKL 133
           P A NR I+KFVA+SPKS+ LNVLS ++S  T+ P L   AL+LYS ITEA WF WN KL
Sbjct: 109 PSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFFALSLYSEITEASWFDWNPKL 168

Query: 134 VADLIAFLDQNGLYSESEALISETISKLGFQERKLVNFYSQLVESLSKHGLERGFGNSYA 193
           +A+LIA L++   + ESE L+S  +S+L   ER    F   LVES SK G  +GF  +  
Sbjct: 169 IAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLCNLVESNSKQGSIQGFSEASF 228

Query: 194 HLLELLYNSSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRSIIYA 253
            L E++  SSSVYVK +AY+SMV+GLC+M +P +AE +++EMR + I P  +EY+S++Y 
Sbjct: 229 RLREIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIEEMRMEKIKPGLFEYKSVLYG 288

Query: 254 YGTLGLFEDMKRSLKQMENDDNALDTIFSNMVLSSYGAHNKLADMVLWLQRMKTSALCNF 313
           YG LGLF+DM R + +M  + + +DT+ SNMVLSSYGAH+ L  M  WLQ++K   +  F
Sbjct: 289 YGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHDALPQMGSWLQKLKGFNV-PF 348

Query: 314 SVRTYNFVLNSCPKITSMLQDHKSDEFPVLIEDLIEVLDGDEEALLVEELVVGSSILKEV 373
           S+RTYN VLNSCP I SML+D   D  PV + +L   L+ ++EALLV EL   SS+L E 
Sbjct: 349 SIRTYNSVLNSCPTIISMLKD--LDSCPVSLSELRTFLN-EDEALLVHEL-TQSSVLDEA 408

Query: 374 MVWDAMELKLNLHGAHVGAAYVIMLQWMKEMRLKFEDESCVIPAQVTVISGSGNHSIVRG 433
           + W+A+E KL+LHG H+ ++Y+I+LQWM E RL+F +E CVIPA++ V+SGSG HS VRG
Sbjct: 409 IEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEKCVIPAEIVVVSGSGKHSNVRG 468

Query: 434 ESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNCLC 475
           ESPVKAL+K+IMVRT SP+RIDRKN G FI+KGK VK  LC
Sbjct: 469 ESPVKALVKKIMVRTGSPMRIDRKNVGSFIAKGKTVKEWLC 504

[Close]

BLAST of Lsi10G008190 vs. TAIR10
Match: AT5G48730.1 (AT5G48730.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-09
Identity = 64/255 (25.10%), Postives = 119/255 (46.67%), Query Frame = 1


Query: 76  ATNRLIRKFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTWNSKLVA 135
           AT  +I K    S K +   VL S+    TA       A+ ++  + E  W+  N  +  
Sbjct: 98  ATKSIIEK-KKGSKKLLPRTVLESLHERITALRW--ESAIQVFELLREQLWYKPNVGIYV 157

Query: 136 DLIAFLDQNGLYSESEALISETISKLGFQERKLVNF--YSQLVESLSKHGLERGFGNSYA 195
            LI  L +     ++  L  E I+     E  +VN   Y+ LV + S+ G    F  ++ 
Sbjct: 158 KLIVMLGKCKQPEKAHELFQEMIN-----EGCVVNHEVYTALVSAYSRSGR---FDAAFT 217

Query: 196 HLLELLYNSSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRSIIYA 255
            LLE + +S +       Y  ++     +    + + L+ +MR +GI P+   Y ++I A
Sbjct: 218 -LLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDA 277

Query: 256 YGTLGLFEDMKRSLKQMENDDNAL-DTIFSNMVLSSYGAHNKLADMVLWLQRMKTSALCN 315
           YG   +F +M+ +L QM  +D+   D+   N  L ++G + ++  M    ++ ++S +  
Sbjct: 278 YGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGI-E 337

Query: 316 FSVRTYNFVLNSCPK 328
            ++RT+N +L+S  K
Sbjct: 338 PNIRTFNILLDSYGK 339

[Close]

BLAST of Lsi10G008190 vs. TAIR10
Match: AT3G53170.1 (AT3G53170.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 8.6e-08
Identity = 57/247 (23.08%), Postives = 105/247 (42.51%), Query Frame = 1


Query: 83  KFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTWNSKLVADLIAFLD 142
           K++   PK++ L  L   I  +  Q      AL +++ + +  W+    K    L   L 
Sbjct: 102 KYLTLWPKAV-LEALDEAIKENRWQS-----ALKIFNLLRKQHWYEPRCKTYTKLFKVLG 161

Query: 143 QNGLYSESEALISETISKLGFQERKLVNFYSQLVESLSKHGL-ERGFGNSYAHLLELLYN 202
            N    +  +L+ E +   G   +  ++ Y+ L+    K  L ++ F       LE + +
Sbjct: 162 -NCKQPDQASLLFEVMLSEGL--KPTIDVYTSLISVYGKSELLDKAFST-----LEYMKS 221

Query: 203 SSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRSIIYAYGTLGLFE 262
            S        +  +++  C + R    +++V EM   G+  S   Y +II  YG  G+FE
Sbjct: 222 VSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFE 281

Query: 263 DMKRSLKQM-ENDDNALDTIFSNMVLSSYGAHNKLADMVLWLQRMKTSALCNFSVRTYNF 322
           +M+  L  M E+ D+  D    N ++ SYG    +  M  W  R +   +    + T+N 
Sbjct: 282 EMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGV-QPDITTFNI 333

Query: 323 VLNSCPK 328
           ++ S  K
Sbjct: 342 LILSFGK 333

[Close]

BLAST of Lsi10G008190 vs. TAIR10
Match: AT1G74750.1 (AT1G74750.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-06
Identity = 34/123 (27.64%), Postives = 60/123 (48.78%), Query Frame = 1


Query: 355 EEALLVEELVVGSSILKEVMVWDAMELKL-NLHGAHVGAAYVIM---LQWMKEMRLKFED 414
           EEA  V E+  G ++  + +   +    L NLH    G A + +   L W ++  L   D
Sbjct: 726 EEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVMSEGTAVIALSRTLAWFRKQMLVSGD 785

Query: 415 ESCVIPAQVTVISGSGNHSIVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVK 474
                P+++ +++G G  S V G S V+  ++E++     P   +  N+GCF+  G+ +K
Sbjct: 786 ----CPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFNFPFFTENGNSGCFVGSGEPLK 844

[Close]

BLAST of Lsi10G008190 vs. TAIR10
Match: AT3G04130.1 (AT3G04130.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 3.6e-06
Identity = 31/117 (26.50%), Postives = 59/117 (50.43%), Query Frame = 1


Query: 212 YESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRSIIYAYGTLGLFEDMKRSLK-QM 271
           Y ++++ L + K  +EA  +   M+  G  P +  Y  +I+     G  E+ +R  + +M
Sbjct: 297 YTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEM 356

Query: 272 ENDDNALDTIFSNMVLSSYGAHNKLADMVLWLQRMKTSALCNFSVRTYNFVLNSCPK 328
                +++T   N +++ Y  H++    +  L+ M++S LCN  V TY  +L SC K
Sbjct: 357 PELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFK 413

[Close]

BLAST of Lsi10G008190 vs. NCBI nr
Match: gi|659119236|ref|XP_008459547.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Cucumis melo])

HSP 1 Score: 724.5 bits (1869), Expect = 1.2e-205
Identity = 379/484 (78.31%), Postives = 404/484 (83.47%), Query Frame = 1


Query: 29  MELRLCPPPYVIGDGVTFSCQ-------------------ICRSNVLHSPNKATDSSLHW 88
           MELRLCPPPYVIGDGV    Q                    C +    +    +  S   
Sbjct: 1   MELRLCPPPYVIGDGVRLFLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTG 60

Query: 89  PQPSPLATNRLIRKFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTW 148
                 ATNRLIRKFVASSPKSITL+VLS+I+S HT QP LCS ALTLYSRITEA WFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 149 NSKLVADLIAFLDQNGLYSESEALISETISKLGFQERKLVNFYSQLVESLSKHGLERGFG 208
           NSKLVADL+AFL QNGLYSESEALISE ISKLG QERKLVNFYSQLVES SKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 209 NSYAHLLELLYNSSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRS 268
           +SY+ L ELLYNS SVYVKRRAYESMVTGLCSMKRP EAE+LVKEMRSKGI P+AYEYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 269 IIYAYGTLGLFEDMKRSLKQMENDDNALDTIFSNMVLSSYGAHNKLADMVLWLQRMKTSA 328
           IIYAYGTLGLFE+MKRSLKQMEND+  LDT+ SNMVLSSYGAHNKL DM+LWLQRMKTS+
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSS 300

Query: 329 LCNFSVRTYNFVLNSCPKITSMLQDHKSDEFPVLIEDLIEVLDGDEEALLVEELVVGSSI 388
            C  SVRTYN VLNSCPKITSMLQDHKS + PVLIEDLI +LDGDEEALLV+EL+VGSS+
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 389 LKEVMVWDAMELKLNLHGAHVGAAYVIMLQWMKEMRLKFEDESCVIPAQVTVISGSGNHS 448
           L E+MVWDAMELKL+LHGAHVGAAYVIMLQW+KEMRL FEDES VIPAQVT+I GSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESNVIPAQVTLICGSGKHS 420

Query: 449 IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNCLCSLAEKKDIVANRKCY 494
           IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKN LCSL  KKD VANRKCY
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNWLCSLPGKKDTVANRKCY 480

[Close]

BLAST of Lsi10G008190 vs. NCBI nr
Match: gi|778707816|ref|XP_011656064.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Cucumis sativus])

HSP 1 Score: 709.9 bits (1831), Expect = 3.1e-201
Identity = 376/478 (78.66%), Postives = 397/478 (83.05%), Query Frame = 1


Query: 29  MELRLCPPPYVIGDGVTF------------------SCQI-CRSNVLHSPNKATDSSLHW 88
           MELRLCPPPYVIGDGV                    + Q+ C S    +    +  S   
Sbjct: 1   MELRLCPPPYVIGDGVRLFLHPFKRLHAFRSYPFVPNLQVKCTSLTKQTHRFLSTLSTTA 60

Query: 89  PQPSPLATNRLIRKFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTW 148
                 ATNRLIRKFVASSPKSITL+VLS+I+S HT QP LCS ALTLYSRITEA WFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 149 NSKLVADLIAFLDQNGLYSESEALISETISKLGFQERKLVNFYSQLVESLSKHGLERGFG 208
           NSKLVADL+AFLDQNGLYSESE LISE ISKLG QERKLVNFYSQLVES SKHG ERGF 
Sbjct: 121 NSKLVADLVAFLDQNGLYSESEVLISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFV 180

Query: 209 NSYAHLLELLYNSSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRS 268
           +SY+ LLELLYNS SVYVKRRAYESMVTGLCSMKRP EAE LVKEMRSKGI P+AYEYRS
Sbjct: 181 DSYSRLLELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAENLVKEMRSKGITPTAYEYRS 240

Query: 269 IIYAYGTLGLFEDMKRSLKQMENDDNALDTIFSNMVLSSYGAHNKLADMVLWLQRMKTSA 328
           IIYAYGTLGLFE+MKRSLKQMEND+  LDT+ SNMVLSSYGAHNKL DMVLWLQRMKTS 
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMVLWLQRMKTSP 300

Query: 329 LCNFSVRTYNFVLNSCPKITSMLQDHKSDEFPVLIEDLIEVLDGDEEALLVEELVVGSSI 388
            CN SVRTYN VLNSCPKIT+MLQDHKS   PVLIEDLI VLDGDEEALLVEEL+ GSS+
Sbjct: 301 HCNSSVRTYNSVLNSCPKITAMLQDHKSTNLPVLIEDLIAVLDGDEEALLVEELLAGSSV 360

Query: 389 LKEVMVWDAMELKLNLHGAHVGAAYVIMLQWMKEMRLKFEDESCVIPAQVTVISGSGNHS 448
           L E+MVWDAMELKL+LHGAHVGAAYVIMLQW+KEMRL FEDES VIPAQVT+I GSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESYVIPAQVTLICGSGKHS 420

Query: 449 IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNCLCSLAEKKDIVANRK 488
           IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKN LCSL  KKD V NRK
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNWLCSLPGKKDTVPNRK 478

[Close]

BLAST of Lsi10G008190 vs. NCBI nr
Match: gi|469474106|gb|AGH33847.1| (PPR [Cucumis melo])

HSP 1 Score: 704.9 bits (1818), Expect = 1.0e-199
Identity = 360/418 (86.12%), Postives = 381/418 (91.15%), Query Frame = 1


Query: 76  ATNRLIRKFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTWNSKLVA 135
           ATNRLIRKFVASSPKSITL+VLS+I+S HT QP LCS ALTLYSRITEA WFTWNSKLVA
Sbjct: 67  ATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTWNSKLVA 126

Query: 136 DLIAFLDQNGLYSESEALISETISKLGFQERKLVNFYSQLVESLSKHGLERGFGNSYAHL 195
           DL+AFL QNGLYSESEALISE ISKLG QERKLVNFYSQLVES SKHG ERGFG+SY+ L
Sbjct: 127 DLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFGDSYSRL 186

Query: 196 LELLYNSSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRSIIYAYG 255
            ELLYNS SVYVKRRAYESMVTGLCSMKRP EAE+LVKEMRSKGI P+AYEYRSIIYAYG
Sbjct: 187 FELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRSIIYAYG 246

Query: 256 TLGLFEDMKRSLKQMENDDNALDTIFSNMVLSSYGAHNKLADMVLWLQRMKTSALCNFSV 315
           TLGLFE+MKRSLKQMEND+  LDT+ SNMVLSSYGAHNKL DM+LWLQRMKTS  C  SV
Sbjct: 247 TLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSPHCKSSV 306

Query: 316 RTYNFVLNSCPKITSMLQDHKSDEFPVLIEDLIEVLDGDEEALLVEELVVGSSILKEVMV 375
           RTYN VLNSCPKITSMLQDHKS + PVLIEDLI +LDGDEEALLV+EL+VGSS+L E+MV
Sbjct: 307 RTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSVLNEIMV 366

Query: 376 WDAMELKLNLHGAHVGAAYVIMLQWMKEMRLKFEDESCVIPAQVTVISGSGNHSIVRGES 435
           WDAMELKL+LHGAHVGAAYVIMLQW+KEMRL FEDES VIPAQVT+I GSG HSIVRGES
Sbjct: 367 WDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESYVIPAQVTLICGSGKHSIVRGES 426

Query: 436 PVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNCLCSLAEKKDIVANRKCYNRPF 494
           PVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKN LCSL  KKD VANRKCY RPF
Sbjct: 427 PVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNWLCSLPGKKDTVANRKCYKRPF 484

[Close]

BLAST of Lsi10G008190 vs. NCBI nr
Match: gi|595793963|ref|XP_007200730.1| (hypothetical protein PRUPE_ppa021547mg [Prunus persica])

HSP 1 Score: 464.2 bits (1193), Expect = 3.0e-127
Identity = 240/398 (60.30%), Postives = 313/398 (78.64%), Query Frame = 1


Query: 77  TNRLIRKFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTWNSKLVAD 136
           TN+LI KF+ SS KSI LN LS ++SP T  P L S+AL  YS+ITEA WF WN KLVA 
Sbjct: 55  TNKLIAKFLTSSTKSIALNTLSYLLSPDTTLPHLSSLALPFYSKITEASWFEWNPKLVAA 114

Query: 137 LIAFLDQNGLYSESEALISETISKLGFQERKLVNFYSQLVESLSKHGLERGFGNSYAHLL 196
           L+A LD+ G ++E+E LISETISKLG +ER+L  F+ QLVES SK   + GF +SY++L 
Sbjct: 115 LVALLDKQGQHNEAEVLISETISKLGSRERELALFHCQLVESHSKLSSKHGFDSSYSYLY 174

Query: 197 ELLYNSSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRSIIYAYGT 256
           +LL+NSSSVYVK RA+ESMV+GLC M RP+EA+ L++EMR +G+ PS +E+RS++Y YG 
Sbjct: 175 QLLHNSSSVYVKNRAFESMVSGLCEMDRPREADNLIEEMRVRGLKPSVFEFRSVVYGYGR 234

Query: 257 LGLFEDMKRSLKQMENDDNALDTIFSNMVLSSYGAHNKLADMVLWLQRMKTSALCNFSVR 316
           LGLFEDM + ++QMEN   A+DTI SNMVLSSYGAH++LA M++WL++MK+ +L  FS+R
Sbjct: 235 LGLFEDMLKVVEQMENQGIAIDTICSNMVLSSYGAHSELAAMLVWLRKMKSLSL-PFSIR 294

Query: 317 TYNFVLNSCPKITSMLQDHKSDEFPVLIEDLIEVLDGDEEALLVEELVVGSSILKEVMVW 376
           TYN VLNSC  I +MLQ+ K  +FP  IE+L  VL+GD EALLV+EL V S++L EVMVW
Sbjct: 295 TYNSVLNSCLTIMAMLQEPK--DFPCSIEELNGVLNGD-EALLVKEL-VESTVLDEVMVW 354

Query: 377 DAMELKLNLHGAHVGAAYVIMLQWMKEMRLKFEDESCVIPAQVTVISGSGNHSIVRGESP 436
           + +E KL+LHG H+G+AY+I+L+W + MR +F     VIPA+V VI GSG HS VRGESP
Sbjct: 355 EPLEAKLDLHGMHLGSAYLILLEWFEAMRCRFNSGKDVIPAEVVVICGSGKHSSVRGESP 414

Query: 437 VKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNCLC 475
           VK L+K++M+R ESP+RIDRKN GCF++KG+AVK+ LC
Sbjct: 415 VKGLVKQMMLRMESPMRIDRKNVGCFVAKGRAVKDWLC 447

[Close]

BLAST of Lsi10G008190 vs. NCBI nr
Match: gi|658045374|ref|XP_008358363.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g17033-like [Malus domestica])

HSP 1 Score: 462.2 bits (1188), Expect = 1.1e-126
Identity = 241/402 (59.95%), Postives = 312/402 (77.61%), Query Frame = 1


Query: 74  PLATNRLIRKFVASSPKSITLNVLSSIISPHTAQPGLCSVALTLYSRITEAPWFTWNSKL 133
           P  TN+LI KF++SSPKSI L+ LS ++SP +  P L S+A  LYS+ITE  WF WN KL
Sbjct: 63  PKFTNKLISKFLSSSPKSIALSTLSYLLSPDSTPPHLSSLAFPLYSKITEESWFEWNPKL 122

Query: 134 VADLIAFLDQNGLYSESEALISETISKLGFQERKLVNFYSQLVESLSKHGLERGFGNSYA 193
           VA L+A LD  GLYS+SEALISETISKLG +ER+L  F+ QL+ES SK   + GF ++Y+
Sbjct: 123 VASLVALLDNQGLYSQSEALISETISKLGSRERELALFHCQLLESHSKLSSKHGFDSTYS 182

Query: 194 HLLELLYNSSSVYVKRRAYESMVTGLCSMKRPQEAETLVKEMRSKGILPSAYEYRSIIYA 253
           +L +LL+NSSSVYVKRRA+ESMV GLC+M RPQEA+ L++EM  KG+ PS +E+RS++Y 
Sbjct: 183 YLHQLLHNSSSVYVKRRAFESMVGGLCAMDRPQEADILIEEMMVKGLKPSVFEFRSVVYG 242

Query: 254 YGTLGLFEDMKRSLKQMENDDNALDTIFSNMVLSSYGAHNKLADMVLWLQRMKTSALCNF 313
           YG LGLFE+M + +++ME    A+DTI SNMVLSSYGA+++LA MVLWL++MK   L  F
Sbjct: 243 YGRLGLFEEMLKVVEKMEGQGLAVDTICSNMVLSSYGAYSELAAMVLWLRKMKILRL-PF 302

Query: 314 SVRTYNFVLNSCPKITSMLQDHKSDEFPVLIEDLIEVLDGDEEALLVEELVVGSSILKEV 373
           S+RTYN VLNSCP I +MLQD K  + P  IE L  VL+GD E L+V+EL VGS++L+EV
Sbjct: 303 SIRTYNSVLNSCPTIMAMLQDPK--DVPCSIEQLNGVLNGD-EGLVVKEL-VGSTVLEEV 362

Query: 374 MVWDAMELKLNLHGAHVGAAYVIMLQWMKEMRLKFEDESCVIPAQVTVISGSGNHSIVRG 433
           MVW+++E KL+LHG H+G+AY+IML+W + MR +F    CVIPA+V ++ G G HS VRG
Sbjct: 363 MVWESLEAKLDLHGLHLGSAYLIMLEWFEAMRHRFNCGECVIPAEVVIVCGLGKHSSVRG 422

Query: 434 ESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNCLCS 476
           ESPVK L+K +M R  SP+RIDRKN GCFI+KG+AVK+ LCS
Sbjct: 423 ESPVKGLVKVMMHRMGSPMRIDRKNVGCFIAKGRAVKDWLCS 459

The following BLAST results are available for this feature:

BLAST of Lsi10G008190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP157_ARATH	5.8e-115	54.61	Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana GN...	[more]
PP424_ARATH	3.6e-08	25.10	Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop...	[more]
PP279_ARATH	1.5e-06	23.08	Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN...	[more]

BLAST of Lsi10G008190 vs. TrEMBL


Match Name	E-value	Identity	Description
Q5DMV7_CUCME	8.5e-206	78.31	Pentatricopeptide (PPR) repeat protein-like OS=Cucumis melo GN=PPR PE=4 SV=1	[more]
M4R4K5_CUCME	7.0e-200	86.12	PPR OS=Cucumis melo GN=PPR PE=4 SV=1	[more]
M5VLA1_PRUPE	2.1e-127	60.30	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021547mg PE=4 SV=1	[more]
V4S5V9_9ROSI	2.1e-124	58.90	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028424mg PE=4 SV=1	[more]
A0A061DXY1_THECC	1.8e-123	57.00	Pentatricopeptide (PPR) repeat-containing protein, putative OS=Theobroma cacao G...	[more]

BLAST of Lsi10G008190 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G17033.2	3.3e-116	54.61	pentatricopeptide (PPR) repeat-containing protein	[more]
AT5G48730.1	2.0e-09	25.10	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G53170.1	8.6e-08	23.08	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G74750.1	2.1e-06	27.64	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G04130.1	3.6e-06	26.50	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Lsi10G008190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119236\|ref\|XP_008459547.1\|	1.2e-205	78.31	PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Cucumis melo]	[more]
gi\|778707816\|ref\|XP_011656064.1\|	3.1e-201	78.66	PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Cucumis sativu...	[more]
gi\|469474106\|gb\|AGH33847.1\|	1.0e-199	86.12	PPR [Cucumis melo]	[more]
gi\|595793963\|ref\|XP_007200730.1\|	3.0e-127	60.30	hypothetical protein PRUPE_ppa021547mg [Prunus persica]	[more]
gi\|658045374\|ref\|XP_008358363.1\|	1.1e-126	59.95	PREDICTED: pentatricopeptide repeat-containing protein At2g17033-like [Malus dom...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR002625	Smr_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G008190.1	Lsi10G008190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002625	Smr domain	SMART	SM00463	SMR_2	coord: 380..467 score: 5.0
IPR002625	Smr domain	PROFILE	PS50828	SMR	coord: 383..467 score: 15
IPR002625	Smr domain	unknown	SSF160443	SMR domain-like	coord: 381..463 score: 1.1
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 211..240 score: 5.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 211..243 score: 5.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 278..312 score: 5.996coord: 208..242 score: 11.005coord: 243..277 score: 7
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 76..456 score: 8.8
None	No IPR available	PANTHER	PTHR24015:SF537	SUBFAMILY NOT NAMED	coord: 76..456 score: 8.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G008190	Cla001730	Watermelon (97103) v1	lsiwmB076
Lsi10G008190	ClCG02G011140	Watermelon (Charleston Gray)	lsiwcgB049
Lsi10G008190	Cla97C02G036900	Watermelon (97103) v2	lsiwmbB048
Lsi10G008190	Bhi10G000927	Wax gourd	lsiwgoB076
Lsi10G008190	Cp4.1LG16g03300	Cucurbita pepo (Zucchini)	cpelsiB226

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G008190	Cucumber (Gy14) v1	cgylsiB174
Lsi10G008190	Wild cucumber (PI 183967)	cpilsiB425
Lsi10G008190	Cucumber (Chinese Long) v2	culsiB423
Lsi10G008190	Cucumber (Gy14) v2	cgyblsiB387
Lsi10G008190	Cucumber (Chinese Long) v3	cuclsiB450