Carg16155 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16155
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide (PPR) repeat protein-like
Location	Cucurbita_argyrosperma_scaffold_068 : 391211 .. 393046 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGATCATTCAACGTGGAACTTTCATCCAACCATTTGTTAATTACTTGAACTGACCTAGTGGAGGGGTATCTGATTTTGCAGATGCGATTTACTTTTGGCGCCTAATGGAGCTCCGCTTTTGCCCGCCGCCGTACGTGATTGGGGATAGCGTTCGACTCTTCTCAAAGGCACCTAAACGCTACGACCGCTTCTGCAGTTACCATTTCCGGCCAAATCTGCAGGTCAAATGTGCTACACTCACCAAACAAAGTCACCGATTCCTCTCTACTTTGGCCACAACTGCCGCCGCCGGCGACCATTCAGCTACCAATCGGTTGATTCGAAAGTTTGTTGCGAGTTCTCCGAAATCTCTTACTCTCAATGTCCTCTCCGATATCCTCTCCTCTCGCACGGCTCAACCTGGACTCTGCTCTGTTGCTCTCACCGTAAGTAGCGTTTTCTTTTTCTTTTCCGCCTCATTATCGCATCATTCTGCGAGAAGATCGAGATAAAAATTATATTTCCAGGTCTTAGATTTAGGTTTCCCTCTCGTTTACGTAATGGTAAAGTTGAGAACTATTGCGAAATTTGGTCACTGATCTCTTCTGATTCTCTCGTTAAACTGTTCTATCAATTTCCTTATGTTCCTACAGTTATATTCCAGAATTACTGAGACGTCCTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTGTTGCCTTCCTCGATAAAAATGGACAGATTGTTGACTCGGAAACCCTAATTTCCGAGGCAATTTCGAAATTAGGCATTCAAGAAAGGAAGCTTGTGAACTTCTACTGTCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATTTGGTAACGCATATGCTCGTCTTCTTGAGCTTCTTTATAATTCGTCCTCGATTTATGTGAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGGCCTCAGGAAGCTGAGAGTTTGGTAAAAGAAATGAAAGCCAAAGGATTTGCTCCTGCTGCATTTGAATACAGGTCCATTATTTACGCATATGGAACATTGGGGTTGTTTGAAGATATGAAGAGGAGTTTGGAAGAGATGAAGAACGATGATATTGCTTTAGACACAGTTTGTTCTAACATGGTGCTTTCATCATATGGAGTTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAATAATGAAAACTTCTGCTCTTCCTTTCTCGGTTCGAACGTACAATTCTGTCTTGAATTCATGTCTGAAGATTACGTCGATGCTACAAGACAAGAGCGGCGATCTTCCAGTTTTGATTGAAGACTTGATCACGGTTCTGGACGGGGACGAGGCTTTGTTGGTTGAAGAGTTGGTTGGTTCATCTGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAGATGAAGTTGGATTTGCATGGAGCACATGTTGGTGCAGCTTATGTGATCATTTTGGAGTGGATGAAGGAGATGAGACTGAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTGTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTCTGATTAGAGAGATTATGTTTCGGACACAAAGTCCGCTGAGAATTGATCGCAAGAACACGGGTTGCTTTGTCGCCAAAGGAAAAGCTGTAAAGAATTGGGTATGTTTGAGGTGAATATAACACAGGTAGCAGATATTGTCTTCTTTGAACTTTCCATCAAAGTTTCTAAAACGCGCTAGGAAGAGGTTTCCACACTCTCATATAGAATGTTGGAAGAGGTTTCCAAGGTTTCCACACCCTTGTAA

mRNA sequence

CAGGATCATTCAACGTGGAACTTTCATCCAACCATTTGTTAATTACTTGAACTGACCTAGTGGAGGGGTATCTGATTTTGCAGATGCGATTTACTTTTGGCGCCTAATGGAGCTCCGCTTTTGCCCGCCGCCGTACGTGATTGGGGATAGCGTTCGACTCTTCTCAAAGGCACCTAAACGCTACGACCGCTTCTGCAGTTACCATTTCCGGCCAAATCTGCAGGTCAAATGTGCTACACTCACCAAACAAAGTCACCGATTCCTCTCTACTTTGGCCACAACTGCCGCCGCCGGCGACCATTCAGCTACCAATCGGTTGATTCGAAAGTTTGTTGCGAGTTCTCCGAAATCTCTTACTCTCAATGTCCTCTCCGATATCCTCTCCTCTCGCACGGCTCAACCTGGACTCTGCTCTGTTGCTCTCACCTTATATTCCAGAATTACTGAGACGTCCTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTGTTGCCTTCCTCGATAAAAATGGACAGATTGTTGACTCGGAAACCCTAATTTCCGAGGCAATTTCGAAATTAGGCATTCAAGAAAGGAAGCTTGTGAACTTCTACTGTCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATTTGGTAACGCATATGCTCGTCTTCTTGAGCTTCTTTATAATTCGTCCTCGATTTATGTGAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGGCCTCAGGAAGCTGAGAGTTTGGTAAAAGAAATGAAAGCCAAAGGATTTGCTCCTGCTGCATTTGAATACAGGTCCATTATTTACGCATATGGAACATTGGGGTTGTTTGAAGATATGAAGAGGAGTTTGGAAGAGATGAAGAACGATGATATTGCTTTAGACACAGTTTGTTCTAACATGGTGCTTTCATCATATGGAGTTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAATAATGAAAACTTCTGCTCTTCCTTTCTCGGTTCGAACGTACAATTCTGTCTTGAATTCATGTCTGAAGATTACGTCGATGCTACAAGACAAGAGCGGCGATCTTCCAGTTTTGATTGAAGACTTGATCACGGTTCTGGACGGGGACGAGGCTTTGTTGGTTGAAGAGTTGGTTGGTTCATCTGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAGATGAAGTTGGATTTGCATGGAGCACATGTTGGTGCAGCTTATGTGATCATTTTGGAGTGGATGAAGGAGATGAGACTGAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTGTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTCTGATTAGAGAGATTATGTTTCGGACACAAAGTCCGCTGAGAATTGATCGCAAGAACACGGGTTGCTTTGTCGCCAAAGGAAAAGCTGTAAAGAATTGGGAAGAGGTTTCCACACTCTCATATAGAATGTTGGAAGAGGTTTCCAAGGTTTCCACACCCTTGTAA

Coding sequence (CDS)

ATGGAGCTCCGCTTTTGCCCGCCGCCGTACGTGATTGGGGATAGCGTTCGACTCTTCTCAAAGGCACCTAAACGCTACGACCGCTTCTGCAGTTACCATTTCCGGCCAAATCTGCAGGTCAAATGTGCTACACTCACCAAACAAAGTCACCGATTCCTCTCTACTTTGGCCACAACTGCCGCCGCCGGCGACCATTCAGCTACCAATCGGTTGATTCGAAAGTTTGTTGCGAGTTCTCCGAAATCTCTTACTCTCAATGTCCTCTCCGATATCCTCTCCTCTCGCACGGCTCAACCTGGACTCTGCTCTGTTGCTCTCACCTTATATTCCAGAATTACTGAGACGTCCTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTGTTGCCTTCCTCGATAAAAATGGACAGATTGTTGACTCGGAAACCCTAATTTCCGAGGCAATTTCGAAATTAGGCATTCAAGAAAGGAAGCTTGTGAACTTCTACTGTCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATTTGGTAACGCATATGCTCGTCTTCTTGAGCTTCTTTATAATTCGTCCTCGATTTATGTGAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGGCCTCAGGAAGCTGAGAGTTTGGTAAAAGAAATGAAAGCCAAAGGATTTGCTCCTGCTGCATTTGAATACAGGTCCATTATTTACGCATATGGAACATTGGGGTTGTTTGAAGATATGAAGAGGAGTTTGGAAGAGATGAAGAACGATGATATTGCTTTAGACACAGTTTGTTCTAACATGGTGCTTTCATCATATGGAGTTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAATAATGAAAACTTCTGCTCTTCCTTTCTCGGTTCGAACGTACAATTCTGTCTTGAATTCATGTCTGAAGATTACGTCGATGCTACAAGACAAGAGCGGCGATCTTCCAGTTTTGATTGAAGACTTGATCACGGTTCTGGACGGGGACGAGGCTTTGTTGGTTGAAGAGTTGGTTGGTTCATCTGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAGATGAAGTTGGATTTGCATGGAGCACATGTTGGTGCAGCTTATGTGATCATTTTGGAGTGGATGAAGGAGATGAGACTGAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTGTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTCTGATTAGAGAGATTATGTTTCGGACACAAAGTCCGCTGAGAATTGATCGCAAGAACACGGGTTGCTTTGTCGCCAAAGGAAAAGCTGTAAAGAATTGGGAAGAGGTTTCCACACTCTCATATAGAATGTTGGAAGAGGTTTCCAAGGTTTCCACACCCTTGTAA

Protein sequence

MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITVLDGDEALLVEELVGSSVLKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNWEEVSTLSYRMLEEVSKVSTPL

Homology

[Close]

BLAST of Carg16155 vs. NCBI nr
Match: XP_023512520.1 (pentatricopeptide repeat-containing protein At2g17033 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 885.2 bits (2286), Expect = 1.0e-253
Identity = 450/459 (98.04%), Postives = 453/459 (98.69%), Query Frame = 0


Query: 1   MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELR CPPPYVIGDSVRLFSKAPKRYD FCSYHFRPNLQVKCATLTKQSHRFLSTLATTA
Sbjct: 1   MELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60

Query: 61  AAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           AAGDHSATNRLIRKFVASSPKS+TLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW
Sbjct: 61  AAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG
Sbjct: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180

Query: 181 NAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           NAYA LLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS
Sbjct: 181 NAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYG HNKLADMVLWLQIMKTSA
Sbjct: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSA 300

Query: 301 LPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITVLDGDEALLVEELVGSSVLKEV 360
           LPFSVRTYNSVLNSC KITS+LQDKSGDLPVLIEDLITVLDGDEALLVEELVGSSVLKEV
Sbjct: 301 LPFSVRTYNSVLNSCPKITSILQDKSGDLPVLIEDLITVLDGDEALLVEELVGSSVLKEV 360

Query: 361 MVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRG 420
           MVWDAMEMKLDLHG HVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRG
Sbjct: 361 MVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRG 420

Query: 421 ESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           ESPVKALIREIMFRTQSPLRIDRKNTGCF+AKGKAVKNW
Sbjct: 421 ESPVKALIREIMFRTQSPLRIDRKNTGCFLAKGKAVKNW 459

[Close]

BLAST of Carg16155 vs. NCBI nr
Match: XP_022943803.1 (pentatricopeptide repeat-containing protein At2g17033 isoform X1 [Cucurbita moschata])

HSP 1 Score: 884.8 bits (2285), Expect = 1.3e-253
Identity = 452/459 (98.47%), Postives = 453/459 (98.69%), Query Frame = 0


Query: 1   MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELRFCPPPYVIGDSVRLFSKAPKRYD FCSYHFRPNLQVKCATLTKQSHRFLSTLATTA
Sbjct: 1   MELRFCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60

Query: 61  AAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           AAGDHSATNRLIRKFVASSPKS+TLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW
Sbjct: 61  AAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG
Sbjct: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180

Query: 181 NAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
            AYA LLELLY SSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS
Sbjct: 181 IAYACLLELLYKSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA
Sbjct: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300

Query: 301 LPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITVLDGDEALLVEELVGSSVLKEV 360
           LPFSVRTYNSVLNSC KITSMLQDKS DLPVLIEDLITVLDGDEALLVEELVGSSVLKEV
Sbjct: 301 LPFSVRTYNSVLNSCPKITSMLQDKSDDLPVLIEDLITVLDGDEALLVEELVGSSVLKEV 360

Query: 361 MVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRG 420
           MVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRG
Sbjct: 361 MVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRG 420

Query: 421 ESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           ESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW
Sbjct: 421 ESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 459

[Close]

BLAST of Carg16155 vs. NCBI nr
Match: XP_022985638.1 (pentatricopeptide repeat-containing protein At2g17033 isoform X1 [Cucurbita maxima])

HSP 1 Score: 868.2 bits (2242), Expect = 1.3e-248
Identity = 444/459 (96.73%), Postives = 448/459 (97.60%), Query Frame = 0


Query: 1   MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELR CPPPYVIGDSVRLFSKAPKRYD FCSYHFRPNLQVKCATLTKQSHRFLSTLATTA
Sbjct: 1   MELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60

Query: 61  AAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           AAGDHSATNRLIRKFVASSPKS+TLNVLSDILSSRTAQPGLCSVA  LYSRITETSWF W
Sbjct: 61  AAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVARILYSRITETSWFAW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGF 
Sbjct: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFR 180

Query: 181 NAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           NAYA L ELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS
Sbjct: 181 NAYACLHELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFEDMKRSLEEMKND IALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA
Sbjct: 241 IIYAYGTLGLFEDMKRSLEEMKNDHIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300

Query: 301 LPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITVLDGDEALLVEELVGSSVLKEV 360
           LPFSVRTYNSVLNSC KITSMLQDKSGDLPVLIEDLI+VLDGDEALLVEELVGSSVL+EV
Sbjct: 301 LPFSVRTYNSVLNSCPKITSMLQDKSGDLPVLIEDLISVLDGDEALLVEELVGSSVLREV 360

Query: 361 MVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRG 420
           MVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFE+ESCVIPAQVTVICGSGNHSIVR 
Sbjct: 361 MVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFENESCVIPAQVTVICGSGNHSIVRR 420

Query: 421 ESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           ESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW
Sbjct: 421 ESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 459

[Close]

BLAST of Carg16155 vs. NCBI nr
Match: XP_008459547.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Cucumis melo] >AAU04769.1 pentatricopeptide (PPR) repeat protein-like [Cucumis melo])

HSP 1 Score: 728.0 bits (1878), Expect = 2.1e-206
Identity = 376/463 (81.21%), Postives = 412/463 (88.98%), Query Frame = 0


Query: 1   MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELR CPPPYVIGD VRLF +  KR D F SY F PNLQVKC TLTKQ+HRFLSTL+TT 
Sbjct: 1   MELRLCPPPYVIGDGVRLFLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTG 60

Query: 61  AAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKS+TL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFL +NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 181 NAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+RL ELLYNS S+YVKRRAYESMVTGLCSMKRP EAESLVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYG HNKL DM+LWLQ MKTS+
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSS 300

Query: 301 -LPFSVRTYNSVLNSCLKITSMLQD-KSGDLPVLIEDLITVLDGD-EALLVEE-LVGSSV 360
               SVRTYNSVLNSC KITSMLQD KSGDLPVLIEDLI +LDGD EALLV+E LVGSSV
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHGAHVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESNVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           IVRGESPVKALI+EIM RT+SPLRIDRKNTGCF++KGKAVKNW
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNW 463

[Close]

BLAST of Carg16155 vs. NCBI nr
Match: AGH33847.1 (PPR [Cucumis melo])

HSP 1 Score: 726.9 bits (1875), Expect = 4.6e-206
Identity = 376/463 (81.21%), Postives = 411/463 (88.77%), Query Frame = 0


Query: 1   MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELR CPPPYVIGD VRL  +  KR D F SY F PNLQVKC TLTKQ+HRFLSTL+TTA
Sbjct: 1   MELRLCPPPYVIGDGVRLLLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTA 60

Query: 61  AAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKS+TL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFL +NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 181 NAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+RL ELLYNS S+YVKRRAYESMVTGLCSMKRP EAESLVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYG HNKL DM+LWLQ MKTS 
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSP 300

Query: 301 -LPFSVRTYNSVLNSCLKITSMLQD-KSGDLPVLIEDLITVLDGD-EALLVEE-LVGSSV 360
               SVRTYNSVLNSC KITSMLQD KSGDLPVLIEDLI +LDGD EALLV+E LVGSSV
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHGAHVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESYVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           IVRGESPVKALI+EIM RT+SPLRIDRKNTGCF++KGKAVKNW
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNW 463

[Close]

BLAST of Carg16155 vs. TAIR10
Match: AT2G17033.2 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 459.1 bits (1180), Expect = 3.2e-129
Identity = 234/415 (56.39%), Postives = 302/415 (72.77%), Query Frame = 0


Query: 45  LTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSV 104
           L K   RFLS+L++ A AGD SA NR I+KFVA+SPKS+ LNVLS +LS +T+ P L   
Sbjct: 89  LMKHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFF 148

Query: 105 ALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYC 164
           AL+LYS ITE SWF WN KL+A+L+A L+K  +  +SETL+S A+S+L   ER    F C
Sbjct: 149 ALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLC 208

Query: 165 QLVESQSKHGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVK 224
            LVES SK GS +GF  A  RL E++  SSS+YVK +AY+SMV+GLC+M +P +AE +++
Sbjct: 209 NLVESNSKQGSIQGFSEASFRLREIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIE 268

Query: 225 EMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHN 284
           EM+ +   P  FEY+S++Y YG LGLF+DM R +  M  +   +DTVCSNMVLSSYG H+
Sbjct: 269 EMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHD 328

Query: 285 KLADMVLWLQIMKTSALPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITVLDGDE 344
            L  M  WLQ +K   +PFS+RTYNSVLNSC  I SML+D     PV + +L T L+ DE
Sbjct: 329 ALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTIISMLKDLD-SCPVSLSELRTFLNEDE 388

Query: 345 ALLVEELVGSSVLKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPA 404
           ALLV EL  SSVL E + W+A+E KLDLHG H+ ++Y+I+L+WM E RL+F +E CVIPA
Sbjct: 389 ALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEKCVIPA 448

Query: 405 QVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           ++ V+ GSG HS VRGESPVKAL+++IM RT SP+RIDRKN G F+AKGK VK W
Sbjct: 449 EIVVVSGSGKHSNVRGESPVKALVKKIMVRTGSPMRIDRKNVGSFIAKGKTVKEW 502

[Close]

BLAST of Carg16155 vs. TAIR10
Match: AT3G53170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-07
Identity = 58/241 (24.07%), Postives = 103/241 (42.74%), Query Frame = 0


Query: 53  LSTLATTAAAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRI 112
           LS +  T AA           K++   PK++ L  L + +     Q      AL +++ +
Sbjct: 81  LSRILRTDAAVKGIERKANSEKYLTLWPKAV-LEALDEAIKENRWQS-----ALKIFNLL 140

Query: 113 TETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSK 172
            +  W+    K    L   L  N +  D  +L+ E +   G+  +  ++ Y  L+   S 
Sbjct: 141 RKQHWYEPRCKTYTKLFKVLG-NCKQPDQASLLFEVMLSEGL--KPTIDVYTSLI---SV 200

Query: 173 HGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFA 232
           +G       A++  LE + + S        +  +++  C + R    +S+V EM   G  
Sbjct: 201 YGKSELLDKAFS-TLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVG 260

Query: 233 PAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCS-NMVLSSYGVHNKLADMVL 292
            +   Y +II  YG  G+FE+M+  L +M  D  +L  VC+ N ++ SYG    +  M  
Sbjct: 261 CSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMES 308

[Close]

BLAST of Carg16155 vs. TAIR10
Match: AT1G74750.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 7.0e-07
Identity = 27/93 (29.03%), Postives = 46/93 (49.46%), Query Frame = 0


Query: 370 LDLHGAHVGAAYVII---LEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRGESPVKA 429
           ++LH    G A + +   L W ++  L   D     P+++ ++ G G  S V G S V+ 
Sbjct: 755 INLHVMSEGTAVIALSRTLAWFRKQMLVSGD----CPSRIDIVTGWGRRSRVTGTSMVRQ 814

Query: 430 LIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
            + E++     P   +  N+GCFV  G+ +KNW
Sbjct: 815 AVEELLNIFNFPFFTENGNSGCFVGSGEPLKNW 843

[Close]

BLAST of Carg16155 vs. Swiss-Prot
Match: sp|Q8GWA9|PP157_ARATH (Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana OX=3702 GN=At2g17033 PE=2 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 5.8e-128
Identity = 234/415 (56.39%), Postives = 302/415 (72.77%), Query Frame = 0


Query: 45  LTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSV 104
           L K   RFLS+L++ A AGD SA NR I+KFVA+SPKS+ LNVLS +LS +T+ P L   
Sbjct: 89  LMKHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFF 148

Query: 105 ALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYC 164
           AL+LYS ITE SWF WN KL+A+L+A L+K  +  +SETL+S A+S+L   ER    F C
Sbjct: 149 ALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLC 208

Query: 165 QLVESQSKHGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVK 224
            LVES SK GS +GF  A  RL E++  SSS+YVK +AY+SMV+GLC+M +P +AE +++
Sbjct: 209 NLVESNSKQGSIQGFSEASFRLREIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIE 268

Query: 225 EMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHN 284
           EM+ +   P  FEY+S++Y YG LGLF+DM R +  M  +   +DTVCSNMVLSSYG H+
Sbjct: 269 EMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHD 328

Query: 285 KLADMVLWLQIMKTSALPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITVLDGDE 344
            L  M  WLQ +K   +PFS+RTYNSVLNSC  I SML+D     PV + +L T L+ DE
Sbjct: 329 ALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTIISMLKDLD-SCPVSLSELRTFLNEDE 388

Query: 345 ALLVEELVGSSVLKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPA 404
           ALLV EL  SSVL E + W+A+E KLDLHG H+ ++Y+I+L+WM E RL+F +E CVIPA
Sbjct: 389 ALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEKCVIPA 448

Query: 405 QVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           ++ V+ GSG HS VRGESPVKAL+++IM RT SP+RIDRKN G F+AKGK VK W
Sbjct: 449 EIVVVSGSGKHSNVRGESPVKALVKKIMVRTGSPMRIDRKNVGSFIAKGKTVKEW 502

[Close]

BLAST of Carg16155 vs. Swiss-Prot
Match: sp|Q9SCP4|PP279_ARATH (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-06
Identity = 58/241 (24.07%), Postives = 103/241 (42.74%), Query Frame = 0


Query: 53  LSTLATTAAAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRI 112
           LS +  T AA           K++   PK++ L  L + +     Q      AL +++ +
Sbjct: 31  LSRILRTDAAVKGIERKANSEKYLTLWPKAV-LEALDEAIKENRWQS-----ALKIFNLL 90

Query: 113 TETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSK 172
            +  W+    K    L   L  N +  D  +L+ E +   G+  +  ++ Y  L+   S 
Sbjct: 91  RKQHWYEPRCKTYTKLFKVLG-NCKQPDQASLLFEVMLSEGL--KPTIDVYTSLI---SV 150

Query: 173 HGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFA 232
           +G       A++  LE + + S        +  +++  C + R    +S+V EM   G  
Sbjct: 151 YGKSELLDKAFS-TLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVG 210

Query: 233 PAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCS-NMVLSSYGVHNKLADMVL 292
            +   Y +II  YG  G+FE+M+  L +M  D  +L  VC+ N ++ SYG    +  M  
Sbjct: 211 CSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMES 258

[Close]

BLAST of Carg16155 vs. Swiss-Prot
Match: sp|Q9SSF9|PP123_ARATH (Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana OX=3702 GN=At1g74750 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.3e-05
Identity = 27/93 (29.03%), Postives = 46/93 (49.46%), Query Frame = 0


Query: 370 LDLHGAHVGAAYVII---LEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRGESPVKA 429
           ++LH    G A + +   L W ++  L   D     P+++ ++ G G  S V G S V+ 
Sbjct: 755 INLHVMSEGTAVIALSRTLAWFRKQMLVSGD----CPSRIDIVTGWGRRSRVTGTSMVRQ 814

Query: 430 LIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
            + E++     P   +  N+GCFV  G+ +KNW
Sbjct: 815 AVEELLNIFNFPFFTENGNSGCFVGSGEPLKNW 843

[Close]

BLAST of Carg16155 vs. TrEMBL
Match: tr|Q5DMV7|Q5DMV7_CUCME (Pentatricopeptide (PPR) repeat protein-like OS=Cucumis melo OX=3656 GN=PPR PE=4 SV=1)

HSP 1 Score: 728.0 bits (1878), Expect = 1.4e-206
Identity = 376/463 (81.21%), Postives = 412/463 (88.98%), Query Frame = 0


Query: 1   MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELR CPPPYVIGD VRLF +  KR D F SY F PNLQVKC TLTKQ+HRFLSTL+TT 
Sbjct: 1   MELRLCPPPYVIGDGVRLFLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTG 60

Query: 61  AAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKS+TL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFL +NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 181 NAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+RL ELLYNS S+YVKRRAYESMVTGLCSMKRP EAESLVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYG HNKL DM+LWLQ MKTS+
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSS 300

Query: 301 -LPFSVRTYNSVLNSCLKITSMLQD-KSGDLPVLIEDLITVLDGD-EALLVEE-LVGSSV 360
               SVRTYNSVLNSC KITSMLQD KSGDLPVLIEDLI +LDGD EALLV+E LVGSSV
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHGAHVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESNVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           IVRGESPVKALI+EIM RT+SPLRIDRKNTGCF++KGKAVKNW
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNW 463

[Close]

BLAST of Carg16155 vs. TrEMBL
Match: tr|M4R4K5|M4R4K5_CUCME (PPR OS=Cucumis melo OX=3656 GN=PPR PE=4 SV=1)

HSP 1 Score: 726.9 bits (1875), Expect = 3.0e-206
Identity = 376/463 (81.21%), Postives = 411/463 (88.77%), Query Frame = 0


Query: 1   MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELR CPPPYVIGD VRL  +  KR D F SY F PNLQVKC TLTKQ+HRFLSTL+TTA
Sbjct: 1   MELRLCPPPYVIGDGVRLLLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTA 60

Query: 61  AAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKS+TL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFL +NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 181 NAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+RL ELLYNS S+YVKRRAYESMVTGLCSMKRP EAESLVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYG HNKL DM+LWLQ MKTS 
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSP 300

Query: 301 -LPFSVRTYNSVLNSCLKITSMLQD-KSGDLPVLIEDLITVLDGD-EALLVEE-LVGSSV 360
               SVRTYNSVLNSC KITSMLQD KSGDLPVLIEDLI +LDGD EALLV+E LVGSSV
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHGAHVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESYVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           IVRGESPVKALI+EIM RT+SPLRIDRKNTGCF++KGKAVKNW
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNW 463

[Close]

BLAST of Carg16155 vs. TrEMBL
Match: tr|A0A2I4GC73|A0A2I4GC73_9ROSI (pentatricopeptide repeat-containing protein At2g17033 OS=Juglans regia OX=51240 GN=LOC109006626 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 9.0e-142
Identity = 262/424 (61.79%), Postives = 333/424 (78.54%), Query Frame = 0


Query: 38  LQVKCATLTKQSHRFLSTLATTAAA-GDHSATNRLIRKFVASSPKSLTLNVLSDILSSRT 97
           L  KC TLTKQ+HRFLSTL +TA      SA ++LIRKFV SSPKS+ L VLS +LS R 
Sbjct: 33  LSTKC-TLTKQAHRFLSTLTSTALRDSSASAIDKLIRKFVESSPKSVALRVLSHLLSPRI 92

Query: 98  AQPGLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQE 157
           +QP L S AL LY RITE SWF WN KLVA LVA LD+ G+  + E LIS+A+SKL ++E
Sbjct: 93  SQPHLSSHALPLYRRITEASWFNWNPKLVAALVALLDEQGRFDEWEMLISDAVSKLELRE 152

Query: 158 RKLVNFYCQLVESQSKHGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRP 217
           R+L  FYC L+ES SK GS+RGF  +YARL +LL+NS S+YVKRR YESMV+GLC+M RP
Sbjct: 153 RELALFYCNLIESHSKQGSQRGFDASYARLNQLLHNSDSVYVKRRGYESMVSGLCTMDRP 212

Query: 218 QEAESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMV 277
           +EAE++ +EM+  G  P+ FE+R ++Y YG LGLFEDM+R + +MKN+ + LDTVCSNM+
Sbjct: 213 REAENMFEEMRVGGLKPSRFEFRCVLYGYGRLGLFEDMQRIVVQMKNEGVGLDTVCSNMI 272

Query: 278 LSSYGVHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDL 337
           LS+YG + +LA+M LWLQ MK S++PF+VRTYNSVLNSC K+ +MLQD  G LP+ IE+L
Sbjct: 273 LSAYGSYFELAEMALWLQKMKASSIPFTVRTYNSVLNSCPKVMAMLQDMDG-LPLSIEEL 332

Query: 338 ITVLDGDEALLVEELVGS-SVLKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKF 397
            +VL+GDEAL+V+ELVGS SVL EVM WD++E+KLDLHG H+G+AY+I L+W++E R + 
Sbjct: 333 SSVLNGDEALVVKELVGSRSVLGEVMEWDSLEVKLDLHGMHLGSAYLITLQWVEEFRHRL 392

Query: 398 EDESCVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKA 457
           +D    IP QV V+CGSG HS VRGESPVK LIR++M R +SP+RIDRKN GCFV KGK 
Sbjct: 393 KDGMHAIPGQVIVVCGSGRHSSVRGESPVKGLIRKMMARMKSPMRIDRKNVGCFVGKGKG 452

Query: 458 VKNW 460
           V++W
Sbjct: 453 VRDW 454

[Close]

BLAST of Carg16155 vs. TrEMBL
Match: tr|A0A251MZ48|A0A251MZ48_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G170200 PE=4 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 2.5e-139
Identity = 256/420 (60.95%), Postives = 328/420 (78.10%), Query Frame = 0


Query: 40  VKCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQP 99
           ++CA +TKQ  RFL+ LA  A A D   TN+LI KF+ SS KS+ LN LS +LS  T  P
Sbjct: 47  IQCA-VTKQGQRFLTKLA--ANARDAKVTNKLIAKFLTSSTKSIALNTLSYLLSPDTTLP 106

Query: 100 GLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKL 159
            L S+AL  YS+ITE SWF WN KLVA LVA LDK GQ  ++E LISE ISKLG +ER+L
Sbjct: 107 HLSSLALPFYSKITEASWFEWNPKLVAALVALLDKQGQHNEAEVLISETISKLGSREREL 166

Query: 160 VNFYCQLVESQSKHGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEA 219
             F+CQLVES SK  S+ GF ++Y+ L +LL+NSSS+YVK RA+ESMV+GLC M RP+EA
Sbjct: 167 ALFHCQLVESHSKLSSKHGFDSSYSYLYQLLHNSSSVYVKNRAFESMVSGLCEMDRPREA 226

Query: 220 ESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSS 279
           ++L++EM+ +G  P+ FE+RS++Y YG LGLFEDM + +E+M+N  IA+DT+CSNMVLSS
Sbjct: 227 DNLIEEMRVRGLKPSVFEFRSVVYGYGRLGLFEDMLKVVEQMENQGIAIDTICSNMVLSS 286

Query: 280 YGVHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITV 339
           YG H++LA M++WL+ MK+ +LPFS+RTYNSVLNSCL I +MLQ+   D P  IE+L  V
Sbjct: 287 YGAHSELAAMLVWLRKMKSLSLPFSIRTYNSVLNSCLTIMAMLQEPK-DFPCSIEELNGV 346

Query: 340 LDGDEALLVEELVGSSVLKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDES 399
           L+GDEALLV+ELV S+VL EVMVW+ +E KLDLHG H+G+AY+I+LEW + MR +F    
Sbjct: 347 LNGDEALLVKELVESTVLDEVMVWEPLEAKLDLHGMHLGSAYLILLEWFEAMRCRFNSGK 406

Query: 400 CVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 459
            VIPA+V VICGSG HS VRGESPVK L++++M R +SP+RIDRKN GCFVAKG+AVK+W
Sbjct: 407 DVIPAEVVVICGSGKHSSVRGESPVKGLVKQMMLRMESPMRIDRKNVGCFVAKGRAVKDW 462

[Close]

BLAST of Carg16155 vs. TrEMBL
Match: tr|M5VLA1|M5VLA1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021547mg PE=4 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 2.5e-139
Identity = 256/420 (60.95%), Postives = 328/420 (78.10%), Query Frame = 0


Query: 40  VKCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQP 99
           ++CA +TKQ  RFL+ LA  A A D   TN+LI KF+ SS KS+ LN LS +LS  T  P
Sbjct: 30  IQCA-VTKQGQRFLTKLA--ANARDAKVTNKLIAKFLTSSTKSIALNTLSYLLSPDTTLP 89

Query: 100 GLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKL 159
            L S+AL  YS+ITE SWF WN KLVA LVA LDK GQ  ++E LISE ISKLG +ER+L
Sbjct: 90  HLSSLALPFYSKITEASWFEWNPKLVAALVALLDKQGQHNEAEVLISETISKLGSREREL 149

Query: 160 VNFYCQLVESQSKHGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEA 219
             F+CQLVES SK  S+ GF ++Y+ L +LL+NSSS+YVK RA+ESMV+GLC M RP+EA
Sbjct: 150 ALFHCQLVESHSKLSSKHGFDSSYSYLYQLLHNSSSVYVKNRAFESMVSGLCEMDRPREA 209

Query: 220 ESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSS 279
           ++L++EM+ +G  P+ FE+RS++Y YG LGLFEDM + +E+M+N  IA+DT+CSNMVLSS
Sbjct: 210 DNLIEEMRVRGLKPSVFEFRSVVYGYGRLGLFEDMLKVVEQMENQGIAIDTICSNMVLSS 269

Query: 280 YGVHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITV 339
           YG H++LA M++WL+ MK+ +LPFS+RTYNSVLNSCL I +MLQ+   D P  IE+L  V
Sbjct: 270 YGAHSELAAMLVWLRKMKSLSLPFSIRTYNSVLNSCLTIMAMLQEPK-DFPCSIEELNGV 329

Query: 340 LDGDEALLVEELVGSSVLKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDES 399
           L+GDEALLV+ELV S+VL EVMVW+ +E KLDLHG H+G+AY+I+LEW + MR +F    
Sbjct: 330 LNGDEALLVKELVESTVLDEVMVWEPLEAKLDLHGMHLGSAYLILLEWFEAMRCRFNSGK 389

Query: 400 CVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 459
            VIPA+V VICGSG HS VRGESPVK L++++M R +SP+RIDRKN GCFVAKG+AVK+W
Sbjct: 390 DVIPAEVVVICGSGKHSSVRGESPVKGLVKQMMLRMESPMRIDRKNVGCFVAKGRAVKDW 445

The following BLAST results are available for this feature:

BLAST of Carg16155 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512520.1	1.0e-253	98.04	pentatricopeptide repeat-containing protein At2g17033 isoform X1 [Cucurbita pepo...	[more]
XP_022943803.1	1.3e-253	98.47	pentatricopeptide repeat-containing protein At2g17033 isoform X1 [Cucurbita mosc...	[more]
XP_022985638.1	1.3e-248	96.73	pentatricopeptide repeat-containing protein At2g17033 isoform X1 [Cucurbita maxi...	[more]
XP_008459547.1	2.1e-206	81.21	PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Cucumis melo] ...	[more]
AGH33847.1	4.6e-206	81.21	PPR [Cucumis melo]	[more]

BLAST of Carg16155 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G17033.2	3.2e-129	56.39	pentatricopeptide (PPR) repeat-containing protein	[more]
AT3G53170.1	1.4e-07	24.07	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G74750.1	7.0e-07	29.03	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Carg16155 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GWA9\|PP157_ARATH	5.8e-128	56.39	Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SCP4\|PP279_ARATH	2.5e-06	24.07	Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SSF9\|PP123_ARATH	1.3e-05	29.03	Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg16155 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|Q5DMV7\|Q5DMV7_CUCME	1.4e-206	81.21	Pentatricopeptide (PPR) repeat protein-like OS=Cucumis melo OX=3656 GN=PPR PE=4 ...	[more]
tr\|M4R4K5\|M4R4K5_CUCME	3.0e-206	81.21	PPR OS=Cucumis melo OX=3656 GN=PPR PE=4 SV=1	[more]
tr\|A0A2I4GC73\|A0A2I4GC73_9ROSI	9.0e-142	61.79	pentatricopeptide repeat-containing protein At2g17033 OS=Juglans regia OX=51240 ...	[more]
tr\|A0A251MZ48\|A0A251MZ48_PRUPE	2.5e-139	60.95	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G170200 PE=4 SV=1	[more]
tr\|M5VLA1\|M5VLA1_PRUPE	2.5e-139	60.95	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021547mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036063	Smr_dom_sf
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat
IPR002625	Smr_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16155-RA	Carg16155-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002625	Smr domain	SMART	SM00463	SMR_2	coord: 367..454 e-value: 3.6E-20 score: 83.0
IPR002625	Smr domain	PROSITE	PS50828	SMR	coord: 370..454 score: 15.652
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 202..231 e-value: 2.9E-5 score: 23.9 coord: 238..265 e-value: 0.58 score: 10.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 202..233 e-value: 3.2E-6 score: 25.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 269..303 score: 5.853
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 234..268 score: 7.695
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 199..233 score: 11.17
None	No IPR available	GENE3D	G3DSA:3.30.1370.110		coord: 368..452 e-value: 6.7E-7 score: 31.3
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 36..459
None	No IPR available	PANTHER	PTHR24015:SF537	SUBFAMILY NOT NAMED	coord: 36..459
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 163..327 e-value: 5.6E-20 score: 73.4
IPR036063	Smr domain superfamily	SUPERFAMILY	SSF160443	SMR domain-like	coord: 367..452

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16155	Cla001730	Watermelon (97103) v1	carwmB0341
Carg16155	ClCG02G011140	Watermelon (Charleston Gray)	carwcgB0337
Carg16155	CmaCh20G007330	Cucurbita maxima (Rimu)	carcmaB0486
Carg16155	CmoCh20G007310	Cucurbita moschata (Rifu)	carcmoB0473
Carg16155	Cp4.1LG16g03300	Cucurbita pepo (Zucchini)	carcpeB0485
Carg16155	Cla97C02G036900	Watermelon (97103) v2	carwmbB0359
Carg16155	Bhi10G000927	Wax gourd	carwgoB0433

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16155	Wax gourd	carwgoB0430
Carg16155	Silver-seed gourd	carcarB370
Carg16155	Silver-seed gourd	carcarB371
Carg16155	Cucumber (Gy14) v2	carcgybB0360
Carg16155	Cucumber (Gy14) v2	carcgybB0361
Carg16155	Cucumber (Gy14) v2	carcgybB0362
Carg16155	Cucumber (Gy14) v1	carcgyB0405
Carg16155	Cucurbita maxima (Rimu)	carcmaB0483
Carg16155	Cucurbita maxima (Rimu)	carcmaB0484
Carg16155	Cucurbita maxima (Rimu)	carcmaB0490
Carg16155	Cucurbita maxima (Rimu)	carcmaB0491
Carg16155	Cucurbita maxima (Rimu)	carcmaB0494
Carg16155	Cucurbita moschata (Rifu)	carcmoB0470
Carg16155	Cucurbita moschata (Rifu)	carcmoB0471
Carg16155	Cucurbita moschata (Rifu)	carcmoB0476
Carg16155	Cucurbita moschata (Rifu)	carcmoB0477
Carg16155	Cucurbita pepo (Zucchini)	carcpeB0482
Carg16155	Cucurbita pepo (Zucchini)	carcpeB0484
Carg16155	Cucurbita pepo (Zucchini)	carcpeB0486
Carg16155	Cucurbita pepo (Zucchini)	carcpeB0487
Carg16155	Cucurbita pepo (Zucchini)	carcpeB0488
Carg16155	Wild cucumber (PI 183967)	carcpiB0383
Carg16155	Wild cucumber (PI 183967)	carcpiB0386
Carg16155	Cucumber (Chinese Long) v2	carcuB0381
Carg16155	Cucumber (Chinese Long) v2	carcuB0382
Carg16155	Cucumber (Chinese Long) v2	carcuB0383
Carg16155	Cucumber (Chinese Long) v3	carcucB0385
Carg16155	Cucumber (Chinese Long) v3	carcucB0386
Carg16155	Bottle gourd (USVL1VR-Ls)	carlsiB313
Carg16155	Bottle gourd (USVL1VR-Ls)	carlsiB316
Carg16155	Bottle gourd (USVL1VR-Ls)	carlsiB317
Carg16155	Melon (DHL92) v3.5.1	carmeB0353
Carg16155	Melon (DHL92) v3.5.1	carmeB0354
Carg16155	Melon (DHL92) v3.5.1	carmeB0357
Carg16155	Melon (DHL92) v3.6.1	carmedB0359
Carg16155	Melon (DHL92) v3.6.1	carmedB0360
Carg16155	Melon (DHL92) v3.6.1	carmedB0362
Carg16155	Watermelon (Charleston Gray)	carwcgB0335
Carg16155	Watermelon (Charleston Gray)	carwcgB0336
Carg16155	Watermelon (97103) v1	carwmB0333
Carg16155	Watermelon (97103) v1	carwmB0334
Carg16155	Watermelon (97103) v1	carwmB0335
Carg16155	Watermelon (97103) v2	carwmbB0356
Carg16155	Watermelon (97103) v2	carwmbB0360