Carg16155-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16155-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide (PPR) repeat protein-like
Location	Cucurbita_argyrosperma_scaffold_068 : 391211 .. 393046 (-)
Sequence length	1549

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGATCATTCAACGTGGAACTTTCATCCAACCATTTGTTAATTACTTGAACTGACCTAGTGGAGGGGTATCTGATTTTGCAGATGCGATTTACTTTTGGCGCCTAATGGAGCTCCGCTTTTGCCCGCCGCCGTACGTGATTGGGGATAGCGTTCGACTCTTCTCAAAGGCACCTAAACGCTACGACCGCTTCTGCAGTTACCATTTCCGGCCAAATCTGCAGGTCAAATGTGCTACACTCACCAAACAAAGTCACCGATTCCTCTCTACTTTGGCCACAACTGCCGCCGCCGGCGACCATTCAGCTACCAATCGGTTGATTCGAAAGTTTGTTGCGAGTTCTCCGAAATCTCTTACTCTCAATGTCCTCTCCGATATCCTCTCCTCTCGCACGGCTCAACCTGGACTCTGCTCTGTTGCTCTCACCGTAAGTAGCGTTTTCTTTTTCTTTTCCGCCTCATTATCGCATCATTCTGCGAGAAGATCGAGATAAAAATTATATTTCCAGGTCTTAGATTTAGGTTTCCCTCTCGTTTACGTAATGGTAAAGTTGAGAACTATTGCGAAATTTGGTCACTGATCTCTTCTGATTCTCTCGTTAAACTGTTCTATCAATTTCCTTATGTTCCTACAGTTATATTCCAGAATTACTGAGACGTCCTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTGTTGCCTTCCTCGATAAAAATGGACAGATTGTTGACTCGGAAACCCTAATTTCCGAGGCAATTTCGAAATTAGGCATTCAAGAAAGGAAGCTTGTGAACTTCTACTGTCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATTTGGTAACGCATATGCTCGTCTTCTTGAGCTTCTTTATAATTCGTCCTCGATTTATGTGAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGGCCTCAGGAAGCTGAGAGTTTGGTAAAAGAAATGAAAGCCAAAGGATTTGCTCCTGCTGCATTTGAATACAGGTCCATTATTTACGCATATGGAACATTGGGGTTGTTTGAAGATATGAAGAGGAGTTTGGAAGAGATGAAGAACGATGATATTGCTTTAGACACAGTTTGTTCTAACATGGTGCTTTCATCATATGGAGTTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAATAATGAAAACTTCTGCTCTTCCTTTCTCGGTTCGAACGTACAATTCTGTCTTGAATTCATGTCTGAAGATTACGTCGATGCTACAAGACAAGAGCGGCGATCTTCCAGTTTTGATTGAAGACTTGATCACGGTTCTGGACGGGGACGAGGCTTTGTTGGTTGAAGAGTTGGTTGGTTCATCTGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAGATGAAGTTGGATTTGCATGGAGCACATGTTGGTGCAGCTTATGTGATCATTTTGGAGTGGATGAAGGAGATGAGACTGAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTGTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTCTGATTAGAGAGATTATGTTTCGGACACAAAGTCCGCTGAGAATTGATCGCAAGAACACGGGTTGCTTTGTCGCCAAAGGAAAAGCTGTAAAGAATTGGGTATGTTTGAGGTGAATATAACACAGGTAGCAGATATTGTCTTCTTTGAACTTTCCATCAAAGTTTCTAAAACGCGCTAGGAAGAGGTTTCCACACTCTCATATAGAATGTTGGAAGAGGTTTCCAAGGTTTCCACACCCTTGTAA

mRNA sequence

CAGGATCATTCAACGTGGAACTTTCATCCAACCATTTGTTAATTACTTGAACTGACCTAGTGGAGGGGTATCTGATTTTGCAGATGCGATTTACTTTTGGCGCCTAATGGAGCTCCGCTTTTGCCCGCCGCCGTACGTGATTGGGGATAGCGTTCGACTCTTCTCAAAGGCACCTAAACGCTACGACCGCTTCTGCAGTTACCATTTCCGGCCAAATCTGCAGGTCAAATGTGCTACACTCACCAAACAAAGTCACCGATTCCTCTCTACTTTGGCCACAACTGCCGCCGCCGGCGACCATTCAGCTACCAATCGGTTGATTCGAAAGTTTGTTGCGAGTTCTCCGAAATCTCTTACTCTCAATGTCCTCTCCGATATCCTCTCCTCTCGCACGGCTCAACCTGGACTCTGCTCTGTTGCTCTCACCTTATATTCCAGAATTACTGAGACGTCCTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTGTTGCCTTCCTCGATAAAAATGGACAGATTGTTGACTCGGAAACCCTAATTTCCGAGGCAATTTCGAAATTAGGCATTCAAGAAAGGAAGCTTGTGAACTTCTACTGTCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATTTGGTAACGCATATGCTCGTCTTCTTGAGCTTCTTTATAATTCGTCCTCGATTTATGTGAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGGCCTCAGGAAGCTGAGAGTTTGGTAAAAGAAATGAAAGCCAAAGGATTTGCTCCTGCTGCATTTGAATACAGGTCCATTATTTACGCATATGGAACATTGGGGTTGTTTGAAGATATGAAGAGGAGTTTGGAAGAGATGAAGAACGATGATATTGCTTTAGACACAGTTTGTTCTAACATGGTGCTTTCATCATATGGAGTTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAATAATGAAAACTTCTGCTCTTCCTTTCTCGGTTCGAACGTACAATTCTGTCTTGAATTCATGTCTGAAGATTACGTCGATGCTACAAGACAAGAGCGGCGATCTTCCAGTTTTGATTGAAGACTTGATCACGGTTCTGGACGGGGACGAGGCTTTGTTGGTTGAAGAGTTGGTTGGTTCATCTGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAGATGAAGTTGGATTTGCATGGAGCACATGTTGGTGCAGCTTATGTGATCATTTTGGAGTGGATGAAGGAGATGAGACTGAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTGTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTCTGATTAGAGAGATTATGTTTCGGACACAAAGTCCGCTGAGAATTGATCGCAAGAACACGGGTTGCTTTGTCGCCAAAGGAAAAGCTGTAAAGAATTGGGAAGAGGTTTCCACACTCTCATATAGAATGTTGGAAGAGGTTTCCAAGGTTTCCACACCCTTGTAA

Coding sequence (CDS)

ATGGAGCTCCGCTTTTGCCCGCCGCCGTACGTGATTGGGGATAGCGTTCGACTCTTCTCAAAGGCACCTAAACGCTACGACCGCTTCTGCAGTTACCATTTCCGGCCAAATCTGCAGGTCAAATGTGCTACACTCACCAAACAAAGTCACCGATTCCTCTCTACTTTGGCCACAACTGCCGCCGCCGGCGACCATTCAGCTACCAATCGGTTGATTCGAAAGTTTGTTGCGAGTTCTCCGAAATCTCTTACTCTCAATGTCCTCTCCGATATCCTCTCCTCTCGCACGGCTCAACCTGGACTCTGCTCTGTTGCTCTCACCTTATATTCCAGAATTACTGAGACGTCCTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTGTTGCCTTCCTCGATAAAAATGGACAGATTGTTGACTCGGAAACCCTAATTTCCGAGGCAATTTCGAAATTAGGCATTCAAGAAAGGAAGCTTGTGAACTTCTACTGTCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATTTGGTAACGCATATGCTCGTCTTCTTGAGCTTCTTTATAATTCGTCCTCGATTTATGTGAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGGCCTCAGGAAGCTGAGAGTTTGGTAAAAGAAATGAAAGCCAAAGGATTTGCTCCTGCTGCATTTGAATACAGGTCCATTATTTACGCATATGGAACATTGGGGTTGTTTGAAGATATGAAGAGGAGTTTGGAAGAGATGAAGAACGATGATATTGCTTTAGACACAGTTTGTTCTAACATGGTGCTTTCATCATATGGAGTTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAATAATGAAAACTTCTGCTCTTCCTTTCTCGGTTCGAACGTACAATTCTGTCTTGAATTCATGTCTGAAGATTACGTCGATGCTACAAGACAAGAGCGGCGATCTTCCAGTTTTGATTGAAGACTTGATCACGGTTCTGGACGGGGACGAGGCTTTGTTGGTTGAAGAGTTGGTTGGTTCATCTGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAGATGAAGTTGGATTTGCATGGAGCACATGTTGGTGCAGCTTATGTGATCATTTTGGAGTGGATGAAGGAGATGAGACTGAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTGTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTCTGATTAGAGAGATTATGTTTCGGACACAAAGTCCGCTGAGAATTGATCGCAAGAACACGGGTTGCTTTGTCGCCAAAGGAAAAGCTGTAAAGAATTGGGAAGAGGTTTCCACACTCTCATATAGAATGTTGGAAGAGGTTTCCAAGGTTTCCACACCCTTGTAA

Protein sequence

MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITVLDGDEALLVEELVGSSVLKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNWEEVSTLSYRMLEEVSKVSTPL

Homology

[Close]

BLAST of Carg16155-RA vs. NCBI nr
Match: XP_023512520.1 (pentatricopeptide repeat-containing protein At2g17033 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 885.2 bits (2286), Expect = 1.0e-253
Identity = 450/459 (98.04%), Postives = 453/459 (98.69%), Query Frame = 0


Query: 1   MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELR CPPPYVIGDSVRLFSKAPKRYD FCSYHFRPNLQVKCATLTKQSHRFLSTLATTA
Sbjct: 1   MELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60

Query: 61  AAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           AAGDHSATNRLIRKFVASSPKS+TLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW
Sbjct: 61  AAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG
Sbjct: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180

Query: 181 NAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           NAYA LLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS
Sbjct: 181 NAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYG HNKLADMVLWLQIMKTSA
Sbjct: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSA 300

Query: 301 LPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITVLDGDEALLVEELVGSSVLKEV 360
           LPFSVRTYNSVLNSC KITS+LQDKSGDLPVLIEDLITVLDGDEALLVEELVGSSVLKEV
Sbjct: 301 LPFSVRTYNSVLNSCPKITSILQDKSGDLPVLIEDLITVLDGDEALLVEELVGSSVLKEV 360

Query: 361 MVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRG 420
           MVWDAMEMKLDLHG HVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRG
Sbjct: 361 MVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRG 420

Query: 421 ESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           ESPVKALIREIMFRTQSPLRIDRKNTGCF+AKGKAVKNW
Sbjct: 421 ESPVKALIREIMFRTQSPLRIDRKNTGCFLAKGKAVKNW 459

[Close]

BLAST of Carg16155-RA vs. NCBI nr
Match: XP_022943803.1 (pentatricopeptide repeat-containing protein At2g17033 isoform X1 [Cucurbita moschata])

HSP 1 Score: 884.8 bits (2285), Expect = 1.3e-253
Identity = 452/459 (98.47%), Postives = 453/459 (98.69%), Query Frame = 0


Query: 1   MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELRFCPPPYVIGDSVRLFSKAPKRYD FCSYHFRPNLQVKCATLTKQSHRFLSTLATTA
Sbjct: 1   MELRFCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60

Query: 61  AAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           AAGDHSATNRLIRKFVASSPKS+TLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW
Sbjct: 61  AAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG
Sbjct: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180

Query: 181 NAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
            AYA LLELLY SSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS
Sbjct: 181 IAYACLLELLYKSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA
Sbjct: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300

Query: 301 LPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITVLDGDEALLVEELVGSSVLKEV 360
           LPFSVRTYNSVLNSC KITSMLQDKS DLPVLIEDLITVLDGDEALLVEELVGSSVLKEV
Sbjct: 301 LPFSVRTYNSVLNSCPKITSMLQDKSDDLPVLIEDLITVLDGDEALLVEELVGSSVLKEV 360

Query: 361 MVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRG 420
           MVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRG
Sbjct: 361 MVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRG 420

Query: 421 ESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           ESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW
Sbjct: 421 ESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 459

[Close]

BLAST of Carg16155-RA vs. NCBI nr
Match: XP_022985638.1 (pentatricopeptide repeat-containing protein At2g17033 isoform X1 [Cucurbita maxima])

HSP 1 Score: 868.2 bits (2242), Expect = 1.3e-248
Identity = 444/459 (96.73%), Postives = 448/459 (97.60%), Query Frame = 0


Query: 1   MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELR CPPPYVIGDSVRLFSKAPKRYD FCSYHFRPNLQVKCATLTKQSHRFLSTLATTA
Sbjct: 1   MELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60

Query: 61  AAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           AAGDHSATNRLIRKFVASSPKS+TLNVLSDILSSRTAQPGLCSVA  LYSRITETSWF W
Sbjct: 61  AAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVARILYSRITETSWFAW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGF 
Sbjct: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFR 180

Query: 181 NAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           NAYA L ELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS
Sbjct: 181 NAYACLHELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFEDMKRSLEEMKND IALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA
Sbjct: 241 IIYAYGTLGLFEDMKRSLEEMKNDHIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300

Query: 301 LPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITVLDGDEALLVEELVGSSVLKEV 360
           LPFSVRTYNSVLNSC KITSMLQDKSGDLPVLIEDLI+VLDGDEALLVEELVGSSVL+EV
Sbjct: 301 LPFSVRTYNSVLNSCPKITSMLQDKSGDLPVLIEDLISVLDGDEALLVEELVGSSVLREV 360

Query: 361 MVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRG 420
           MVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFE+ESCVIPAQVTVICGSGNHSIVR 
Sbjct: 361 MVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFENESCVIPAQVTVICGSGNHSIVRR 420

Query: 421 ESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           ESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW
Sbjct: 421 ESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 459

[Close]

BLAST of Carg16155-RA vs. NCBI nr
Match: XP_008459547.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Cucumis melo] >AAU04769.1 pentatricopeptide (PPR) repeat protein-like [Cucumis melo])

HSP 1 Score: 728.0 bits (1878), Expect = 2.1e-206
Identity = 376/463 (81.21%), Postives = 412/463 (88.98%), Query Frame = 0


Query: 1   MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELR CPPPYVIGD VRLF +  KR D F SY F PNLQVKC TLTKQ+HRFLSTL+TT 
Sbjct: 1   MELRLCPPPYVIGDGVRLFLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTG 60

Query: 61  AAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKS+TL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFL +NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 181 NAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+RL ELLYNS S+YVKRRAYESMVTGLCSMKRP EAESLVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYG HNKL DM+LWLQ MKTS+
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSS 300

Query: 301 -LPFSVRTYNSVLNSCLKITSMLQD-KSGDLPVLIEDLITVLDGD-EALLVEE-LVGSSV 360
               SVRTYNSVLNSC KITSMLQD KSGDLPVLIEDLI +LDGD EALLV+E LVGSSV
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHGAHVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESNVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           IVRGESPVKALI+EIM RT+SPLRIDRKNTGCF++KGKAVKNW
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNW 463

[Close]

BLAST of Carg16155-RA vs. NCBI nr
Match: AGH33847.1 (PPR [Cucumis melo])

HSP 1 Score: 726.9 bits (1875), Expect = 4.6e-206
Identity = 376/463 (81.21%), Postives = 411/463 (88.77%), Query Frame = 0


Query: 1   MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELR CPPPYVIGD VRL  +  KR D F SY F PNLQVKC TLTKQ+HRFLSTL+TTA
Sbjct: 1   MELRLCPPPYVIGDGVRLLLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTA 60

Query: 61  AAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKS+TL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFL +NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 181 NAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+RL ELLYNS S+YVKRRAYESMVTGLCSMKRP EAESLVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYG HNKL DM+LWLQ MKTS 
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSP 300

Query: 301 -LPFSVRTYNSVLNSCLKITSMLQD-KSGDLPVLIEDLITVLDGD-EALLVEE-LVGSSV 360
               SVRTYNSVLNSC KITSMLQD KSGDLPVLIEDLI +LDGD EALLV+E LVGSSV
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHGAHVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESYVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           IVRGESPVKALI+EIM RT+SPLRIDRKNTGCF++KGKAVKNW
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNW 463

[Close]

BLAST of Carg16155-RA vs. TAIR10
Match: AT2G17033.2 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 459.1 bits (1180), Expect = 3.2e-129
Identity = 234/415 (56.39%), Postives = 302/415 (72.77%), Query Frame = 0


Query: 45  LTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSV 104
           L K   RFLS+L++ A AGD SA NR I+KFVA+SPKS+ LNVLS +LS +T+ P L   
Sbjct: 89  LMKHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFF 148

Query: 105 ALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYC 164
           AL+LYS ITE SWF WN KL+A+L+A L+K  +  +SETL+S A+S+L   ER    F C
Sbjct: 149 ALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLC 208

Query: 165 QLVESQSKHGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVK 224
            LVES SK GS +GF  A  RL E++  SSS+YVK +AY+SMV+GLC+M +P +AE +++
Sbjct: 209 NLVESNSKQGSIQGFSEASFRLREIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIE 268

Query: 225 EMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHN 284
           EM+ +   P  FEY+S++Y YG LGLF+DM R +  M  +   +DTVCSNMVLSSYG H+
Sbjct: 269 EMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHD 328

Query: 285 KLADMVLWLQIMKTSALPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITVLDGDE 344
            L  M  WLQ +K   +PFS+RTYNSVLNSC  I SML+D     PV + +L T L+ DE
Sbjct: 329 ALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTIISMLKDLD-SCPVSLSELRTFLNEDE 388

Query: 345 ALLVEELVGSSVLKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPA 404
           ALLV EL  SSVL E + W+A+E KLDLHG H+ ++Y+I+L+WM E RL+F +E CVIPA
Sbjct: 389 ALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEKCVIPA 448

Query: 405 QVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           ++ V+ GSG HS VRGESPVKAL+++IM RT SP+RIDRKN G F+AKGK VK W
Sbjct: 449 EIVVVSGSGKHSNVRGESPVKALVKKIMVRTGSPMRIDRKNVGSFIAKGKTVKEW 502

[Close]

BLAST of Carg16155-RA vs. TAIR10
Match: AT3G53170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-07
Identity = 58/241 (24.07%), Postives = 103/241 (42.74%), Query Frame = 0


Query: 53  LSTLATTAAAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRI 112
           LS +  T AA           K++   PK++ L  L + +     Q      AL +++ +
Sbjct: 81  LSRILRTDAAVKGIERKANSEKYLTLWPKAV-LEALDEAIKENRWQS-----ALKIFNLL 140

Query: 113 TETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSK 172
            +  W+    K    L   L  N +  D  +L+ E +   G+  +  ++ Y  L+   S 
Sbjct: 141 RKQHWYEPRCKTYTKLFKVLG-NCKQPDQASLLFEVMLSEGL--KPTIDVYTSLI---SV 200

Query: 173 HGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFA 232
           +G       A++  LE + + S        +  +++  C + R    +S+V EM   G  
Sbjct: 201 YGKSELLDKAFS-TLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVG 260

Query: 233 PAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCS-NMVLSSYGVHNKLADMVL 292
            +   Y +II  YG  G+FE+M+  L +M  D  +L  VC+ N ++ SYG    +  M  
Sbjct: 261 CSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMES 308

[Close]

BLAST of Carg16155-RA vs. TAIR10
Match: AT1G74750.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 7.0e-07
Identity = 27/93 (29.03%), Postives = 46/93 (49.46%), Query Frame = 0


Query: 370 LDLHGAHVGAAYVII---LEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRGESPVKA 429
           ++LH    G A + +   L W ++  L   D     P+++ ++ G G  S V G S V+ 
Sbjct: 755 INLHVMSEGTAVIALSRTLAWFRKQMLVSGD----CPSRIDIVTGWGRRSRVTGTSMVRQ 814

Query: 430 LIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
            + E++     P   +  N+GCFV  G+ +KNW
Sbjct: 815 AVEELLNIFNFPFFTENGNSGCFVGSGEPLKNW 843

[Close]

BLAST of Carg16155-RA vs. Swiss-Prot
Match: sp|Q8GWA9|PP157_ARATH (Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana OX=3702 GN=At2g17033 PE=2 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 5.8e-128
Identity = 234/415 (56.39%), Postives = 302/415 (72.77%), Query Frame = 0


Query: 45  LTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSV 104
           L K   RFLS+L++ A AGD SA NR I+KFVA+SPKS+ LNVLS +LS +T+ P L   
Sbjct: 89  LMKHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFF 148

Query: 105 ALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYC 164
           AL+LYS ITE SWF WN KL+A+L+A L+K  +  +SETL+S A+S+L   ER    F C
Sbjct: 149 ALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLC 208

Query: 165 QLVESQSKHGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVK 224
            LVES SK GS +GF  A  RL E++  SSS+YVK +AY+SMV+GLC+M +P +AE +++
Sbjct: 209 NLVESNSKQGSIQGFSEASFRLREIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIE 268

Query: 225 EMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHN 284
           EM+ +   P  FEY+S++Y YG LGLF+DM R +  M  +   +DTVCSNMVLSSYG H+
Sbjct: 269 EMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHD 328

Query: 285 KLADMVLWLQIMKTSALPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITVLDGDE 344
            L  M  WLQ +K   +PFS+RTYNSVLNSC  I SML+D     PV + +L T L+ DE
Sbjct: 329 ALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTIISMLKDLD-SCPVSLSELRTFLNEDE 388

Query: 345 ALLVEELVGSSVLKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPA 404
           ALLV EL  SSVL E + W+A+E KLDLHG H+ ++Y+I+L+WM E RL+F +E CVIPA
Sbjct: 389 ALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEKCVIPA 448

Query: 405 QVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           ++ V+ GSG HS VRGESPVKAL+++IM RT SP+RIDRKN G F+AKGK VK W
Sbjct: 449 EIVVVSGSGKHSNVRGESPVKALVKKIMVRTGSPMRIDRKNVGSFIAKGKTVKEW 502

[Close]

BLAST of Carg16155-RA vs. Swiss-Prot
Match: sp|Q9SCP4|PP279_ARATH (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-06
Identity = 58/241 (24.07%), Postives = 103/241 (42.74%), Query Frame = 0


Query: 53  LSTLATTAAAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRI 112
           LS +  T AA           K++   PK++ L  L + +     Q      AL +++ +
Sbjct: 31  LSRILRTDAAVKGIERKANSEKYLTLWPKAV-LEALDEAIKENRWQS-----ALKIFNLL 90

Query: 113 TETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSK 172
            +  W+    K    L   L  N +  D  +L+ E +   G+  +  ++ Y  L+   S 
Sbjct: 91  RKQHWYEPRCKTYTKLFKVLG-NCKQPDQASLLFEVMLSEGL--KPTIDVYTSLI---SV 150

Query: 173 HGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFA 232
           +G       A++  LE + + S        +  +++  C + R    +S+V EM   G  
Sbjct: 151 YGKSELLDKAFS-TLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVG 210

Query: 233 PAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCS-NMVLSSYGVHNKLADMVL 292
            +   Y +II  YG  G+FE+M+  L +M  D  +L  VC+ N ++ SYG    +  M  
Sbjct: 211 CSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMES 258

[Close]

BLAST of Carg16155-RA vs. Swiss-Prot
Match: sp|Q9SSF9|PP123_ARATH (Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana OX=3702 GN=At1g74750 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.3e-05
Identity = 27/93 (29.03%), Postives = 46/93 (49.46%), Query Frame = 0


Query: 370 LDLHGAHVGAAYVII---LEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRGESPVKA 429
           ++LH    G A + +   L W ++  L   D     P+++ ++ G G  S V G S V+ 
Sbjct: 755 INLHVMSEGTAVIALSRTLAWFRKQMLVSGD----CPSRIDIVTGWGRRSRVTGTSMVRQ 814

Query: 430 LIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
            + E++     P   +  N+GCFV  G+ +KNW
Sbjct: 815 AVEELLNIFNFPFFTENGNSGCFVGSGEPLKNW 843

[Close]

BLAST of Carg16155-RA vs. TrEMBL
Match: tr|Q5DMV7|Q5DMV7_CUCME (Pentatricopeptide (PPR) repeat protein-like OS=Cucumis melo OX=3656 GN=PPR PE=4 SV=1)

HSP 1 Score: 728.0 bits (1878), Expect = 1.4e-206
Identity = 376/463 (81.21%), Postives = 412/463 (88.98%), Query Frame = 0


Query: 1   MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELR CPPPYVIGD VRLF +  KR D F SY F PNLQVKC TLTKQ+HRFLSTL+TT 
Sbjct: 1   MELRLCPPPYVIGDGVRLFLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTG 60

Query: 61  AAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKS+TL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFL +NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 181 NAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+RL ELLYNS S+YVKRRAYESMVTGLCSMKRP EAESLVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYG HNKL DM+LWLQ MKTS+
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSS 300

Query: 301 -LPFSVRTYNSVLNSCLKITSMLQD-KSGDLPVLIEDLITVLDGD-EALLVEE-LVGSSV 360
               SVRTYNSVLNSC KITSMLQD KSGDLPVLIEDLI +LDGD EALLV+E LVGSSV
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHGAHVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESNVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           IVRGESPVKALI+EIM RT+SPLRIDRKNTGCF++KGKAVKNW
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNW 463

[Close]

BLAST of Carg16155-RA vs. TrEMBL
Match: tr|M4R4K5|M4R4K5_CUCME (PPR OS=Cucumis melo OX=3656 GN=PPR PE=4 SV=1)

HSP 1 Score: 726.9 bits (1875), Expect = 3.0e-206
Identity = 376/463 (81.21%), Postives = 411/463 (88.77%), Query Frame = 0


Query: 1   MELRFCPPPYVIGDSVRLFSKAPKRYDRFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELR CPPPYVIGD VRL  +  KR D F SY F PNLQVKC TLTKQ+HRFLSTL+TTA
Sbjct: 1   MELRLCPPPYVIGDGVRLLLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTA 60

Query: 61  AAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKS+TL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFL +NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 181 NAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+RL ELLYNS S+YVKRRAYESMVTGLCSMKRP EAESLVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYG HNKL DM+LWLQ MKTS 
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSP 300

Query: 301 -LPFSVRTYNSVLNSCLKITSMLQD-KSGDLPVLIEDLITVLDGD-EALLVEE-LVGSSV 360
               SVRTYNSVLNSC KITSMLQD KSGDLPVLIEDLI +LDGD EALLV+E LVGSSV
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHGAHVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESYVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 460
           IVRGESPVKALI+EIM RT+SPLRIDRKNTGCF++KGKAVKNW
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNTGCFISKGKAVKNW 463

[Close]

BLAST of Carg16155-RA vs. TrEMBL
Match: tr|A0A2I4GC73|A0A2I4GC73_9ROSI (pentatricopeptide repeat-containing protein At2g17033 OS=Juglans regia OX=51240 GN=LOC109006626 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 9.0e-142
Identity = 262/424 (61.79%), Postives = 333/424 (78.54%), Query Frame = 0


Query: 38  LQVKCATLTKQSHRFLSTLATTAAA-GDHSATNRLIRKFVASSPKSLTLNVLSDILSSRT 97
           L  KC TLTKQ+HRFLSTL +TA      SA ++LIRKFV SSPKS+ L VLS +LS R 
Sbjct: 33  LSTKC-TLTKQAHRFLSTLTSTALRDSSASAIDKLIRKFVESSPKSVALRVLSHLLSPRI 92

Query: 98  AQPGLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQE 157
           +QP L S AL LY RITE SWF WN KLVA LVA LD+ G+  + E LIS+A+SKL ++E
Sbjct: 93  SQPHLSSHALPLYRRITEASWFNWNPKLVAALVALLDEQGRFDEWEMLISDAVSKLELRE 152

Query: 158 RKLVNFYCQLVESQSKHGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRP 217
           R+L  FYC L+ES SK GS+RGF  +YARL +LL+NS S+YVKRR YESMV+GLC+M RP
Sbjct: 153 RELALFYCNLIESHSKQGSQRGFDASYARLNQLLHNSDSVYVKRRGYESMVSGLCTMDRP 212

Query: 218 QEAESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMV 277
           +EAE++ +EM+  G  P+ FE+R ++Y YG LGLFEDM+R + +MKN+ + LDTVCSNM+
Sbjct: 213 REAENMFEEMRVGGLKPSRFEFRCVLYGYGRLGLFEDMQRIVVQMKNEGVGLDTVCSNMI 272

Query: 278 LSSYGVHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDL 337
           LS+YG + +LA+M LWLQ MK S++PF+VRTYNSVLNSC K+ +MLQD  G LP+ IE+L
Sbjct: 273 LSAYGSYFELAEMALWLQKMKASSIPFTVRTYNSVLNSCPKVMAMLQDMDG-LPLSIEEL 332

Query: 338 ITVLDGDEALLVEELVGS-SVLKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKF 397
            +VL+GDEAL+V+ELVGS SVL EVM WD++E+KLDLHG H+G+AY+I L+W++E R + 
Sbjct: 333 SSVLNGDEALVVKELVGSRSVLGEVMEWDSLEVKLDLHGMHLGSAYLITLQWVEEFRHRL 392

Query: 398 EDESCVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKA 457
           +D    IP QV V+CGSG HS VRGESPVK LIR++M R +SP+RIDRKN GCFV KGK 
Sbjct: 393 KDGMHAIPGQVIVVCGSGRHSSVRGESPVKGLIRKMMARMKSPMRIDRKNVGCFVGKGKG 452

Query: 458 VKNW 460
           V++W
Sbjct: 453 VRDW 454

[Close]

BLAST of Carg16155-RA vs. TrEMBL
Match: tr|A0A251MZ48|A0A251MZ48_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G170200 PE=4 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 2.5e-139
Identity = 256/420 (60.95%), Postives = 328/420 (78.10%), Query Frame = 0


Query: 40  VKCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQP 99
           ++CA +TKQ  RFL+ LA  A A D   TN+LI KF+ SS KS+ LN LS +LS  T  P
Sbjct: 47  IQCA-VTKQGQRFLTKLA--ANARDAKVTNKLIAKFLTSSTKSIALNTLSYLLSPDTTLP 106

Query: 100 GLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKL 159
            L S+AL  YS+ITE SWF WN KLVA LVA LDK GQ  ++E LISE ISKLG +ER+L
Sbjct: 107 HLSSLALPFYSKITEASWFEWNPKLVAALVALLDKQGQHNEAEVLISETISKLGSREREL 166

Query: 160 VNFYCQLVESQSKHGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEA 219
             F+CQLVES SK  S+ GF ++Y+ L +LL+NSSS+YVK RA+ESMV+GLC M RP+EA
Sbjct: 167 ALFHCQLVESHSKLSSKHGFDSSYSYLYQLLHNSSSVYVKNRAFESMVSGLCEMDRPREA 226

Query: 220 ESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSS 279
           ++L++EM+ +G  P+ FE+RS++Y YG LGLFEDM + +E+M+N  IA+DT+CSNMVLSS
Sbjct: 227 DNLIEEMRVRGLKPSVFEFRSVVYGYGRLGLFEDMLKVVEQMENQGIAIDTICSNMVLSS 286

Query: 280 YGVHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITV 339
           YG H++LA M++WL+ MK+ +LPFS+RTYNSVLNSCL I +MLQ+   D P  IE+L  V
Sbjct: 287 YGAHSELAAMLVWLRKMKSLSLPFSIRTYNSVLNSCLTIMAMLQEPK-DFPCSIEELNGV 346

Query: 340 LDGDEALLVEELVGSSVLKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDES 399
           L+GDEALLV+ELV S+VL EVMVW+ +E KLDLHG H+G+AY+I+LEW + MR +F    
Sbjct: 347 LNGDEALLVKELVESTVLDEVMVWEPLEAKLDLHGMHLGSAYLILLEWFEAMRCRFNSGK 406

Query: 400 CVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 459
            VIPA+V VICGSG HS VRGESPVK L++++M R +SP+RIDRKN GCFVAKG+AVK+W
Sbjct: 407 DVIPAEVVVICGSGKHSSVRGESPVKGLVKQMMLRMESPMRIDRKNVGCFVAKGRAVKDW 462

[Close]

BLAST of Carg16155-RA vs. TrEMBL
Match: tr|M5VLA1|M5VLA1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021547mg PE=4 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 2.5e-139
Identity = 256/420 (60.95%), Postives = 328/420 (78.10%), Query Frame = 0


Query: 40  VKCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSLTLNVLSDILSSRTAQP 99
           ++CA +TKQ  RFL+ LA  A A D   TN+LI KF+ SS KS+ LN LS +LS  T  P
Sbjct: 30  IQCA-VTKQGQRFLTKLA--ANARDAKVTNKLIAKFLTSSTKSIALNTLSYLLSPDTTLP 89

Query: 100 GLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKL 159
            L S+AL  YS+ITE SWF WN KLVA LVA LDK GQ  ++E LISE ISKLG +ER+L
Sbjct: 90  HLSSLALPFYSKITEASWFEWNPKLVAALVALLDKQGQHNEAEVLISETISKLGSREREL 149

Query: 160 VNFYCQLVESQSKHGSERGFGNAYARLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEA 219
             F+CQLVES SK  S+ GF ++Y+ L +LL+NSSS+YVK RA+ESMV+GLC M RP+EA
Sbjct: 150 ALFHCQLVESHSKLSSKHGFDSSYSYLYQLLHNSSSVYVKNRAFESMVSGLCEMDRPREA 209

Query: 220 ESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSS 279
           ++L++EM+ +G  P+ FE+RS++Y YG LGLFEDM + +E+M+N  IA+DT+CSNMVLSS
Sbjct: 210 DNLIEEMRVRGLKPSVFEFRSVVYGYGRLGLFEDMLKVVEQMENQGIAIDTICSNMVLSS 269

Query: 280 YGVHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCLKITSMLQDKSGDLPVLIEDLITV 339
           YG H++LA M++WL+ MK+ +LPFS+RTYNSVLNSCL I +MLQ+   D P  IE+L  V
Sbjct: 270 YGAHSELAAMLVWLRKMKSLSLPFSIRTYNSVLNSCLTIMAMLQEPK-DFPCSIEELNGV 329

Query: 340 LDGDEALLVEELVGSSVLKEVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFEDES 399
           L+GDEALLV+ELV S+VL EVMVW+ +E KLDLHG H+G+AY+I+LEW + MR +F    
Sbjct: 330 LNGDEALLVKELVESTVLDEVMVWEPLEAKLDLHGMHLGSAYLILLEWFEAMRCRFNSGK 389

Query: 400 CVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTGCFVAKGKAVKNW 459
            VIPA+V VICGSG HS VRGESPVK L++++M R +SP+RIDRKN GCFVAKG+AVK+W
Sbjct: 390 DVIPAEVVVICGSGKHSSVRGESPVKGLVKQMMLRMESPMRIDRKNVGCFVAKGRAVKDW 445

The following BLAST results are available for this feature:

BLAST of Carg16155-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512520.1	1.0e-253	98.04	pentatricopeptide repeat-containing protein At2g17033 isoform X1 [Cucurbita pepo...	[more]
XP_022943803.1	1.3e-253	98.47	pentatricopeptide repeat-containing protein At2g17033 isoform X1 [Cucurbita mosc...	[more]
XP_022985638.1	1.3e-248	96.73	pentatricopeptide repeat-containing protein At2g17033 isoform X1 [Cucurbita maxi...	[more]
XP_008459547.1	2.1e-206	81.21	PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Cucumis melo] ...	[more]
AGH33847.1	4.6e-206	81.21	PPR [Cucumis melo]	[more]

BLAST of Carg16155-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G17033.2	3.2e-129	56.39	pentatricopeptide (PPR) repeat-containing protein	[more]
AT3G53170.1	1.4e-07	24.07	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G74750.1	7.0e-07	29.03	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Carg16155-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GWA9\|PP157_ARATH	5.8e-128	56.39	Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SCP4\|PP279_ARATH	2.5e-06	24.07	Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SSF9\|PP123_ARATH	1.3e-05	29.03	Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg16155-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|Q5DMV7\|Q5DMV7_CUCME	1.4e-206	81.21	Pentatricopeptide (PPR) repeat protein-like OS=Cucumis melo OX=3656 GN=PPR PE=4 ...	[more]
tr\|M4R4K5\|M4R4K5_CUCME	3.0e-206	81.21	PPR OS=Cucumis melo OX=3656 GN=PPR PE=4 SV=1	[more]
tr\|A0A2I4GC73\|A0A2I4GC73_9ROSI	9.0e-142	61.79	pentatricopeptide repeat-containing protein At2g17033 OS=Juglans regia OX=51240 ...	[more]
tr\|A0A251MZ48\|A0A251MZ48_PRUPE	2.5e-139	60.95	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G170200 PE=4 SV=1	[more]
tr\|M5VLA1\|M5VLA1_PRUPE	2.5e-139	60.95	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021547mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036063	Smr_dom_sf
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat
IPR002625	Smr_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg16155	Carg16155	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg16155-RA	Carg16155-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg16155-RA.CDS.3	Carg16155-RA.CDS.3	CDS
Carg16155-RA.CDS.2	Carg16155-RA.CDS.2	CDS
Carg16155-RA.CDS.1	Carg16155-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg16155-RA.five_prime_UTR.1	Carg16155-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg16155-RA.exon.3	Carg16155-RA.exon.3	exon
Carg16155-RA.exon.2	Carg16155-RA.exon.2	exon
Carg16155-RA.exon.1	Carg16155-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002625	Smr domain	SMART	SM00463	SMR_2	coord: 367..454 e-value: 3.6E-20 score: 83.0
IPR002625	Smr domain	PROSITE	PS50828	SMR	coord: 370..454 score: 15.652
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 202..231 e-value: 2.9E-5 score: 23.9 coord: 238..265 e-value: 0.58 score: 10.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 202..233 e-value: 3.2E-6 score: 25.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 269..303 score: 5.853
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 234..268 score: 7.695
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 199..233 score: 11.17
None	No IPR available	GENE3D	G3DSA:3.30.1370.110		coord: 368..452 e-value: 6.7E-7 score: 31.3
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 36..459
None	No IPR available	PANTHER	PTHR24015:SF537	SUBFAMILY NOT NAMED	coord: 36..459
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 163..327 e-value: 5.6E-20 score: 73.4
IPR036063	Smr domain superfamily	SUPERFAMILY	SSF160443	SMR domain-like	coord: 367..452