Cp4.1LG16g03300.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG16g03300.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide (PPR) repeat protein-like
Location	Cp4.1LG16 : 5151727 .. 5157233 (+)
Sequence length	3127

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCTTTGTTAACTACTTCAACTGACCTAGTGGAGGGGTATCTGATTTTGCAGATGCGATTTACTTTTGGCGCCTAATGGAGCTCCGCTTATGCCCGCCGCCGTACGTGATTGGGGATAGCGTTCGACTCTTCTCAAAGGCACCTAAACGCTACGACGGCTTCTGCAGTTACCATTTCCGGCCAAATCTGCAGGTCAAATGTGCTACACTCACCAAACAAAGTCACCGATTCCTCTCTACTTTGGCCACAACCGCCGCCGCCGGCGACCATTCAGCTACCAATCGGTTGATTCGGAAGTTTGTTGCGAGTTCTCCGAAATCTATTACTCTCAATGTCCTCTCCGATATCCTTTCCTCTCGCACGGCTCAACCTGGACTCTGCTCTGTTGCTCTCACCGTAAGTAGCGTTTTCTTTTTCTTTTCCCCCTCATTATCGCATCATTCTGCGAGAAGATCGAGATGAAAATTATATTTCCAGGTCTTAGATTTAGGTTTCCTTCTCGTCTACGTAATGGTAAAGTTGAGAACTATTGCGAAATTTGGTCACTGATCTCTTCTGATTCTCTCGTTAAACTGTTCTATCAATTTCCTTATGTTCCTACAGTTATATTCCAGAATTACTGAGACGTCCTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTGTTGCCTTCCTCGATAAAAATGGACAGATTGTTGACTCGGAAACCCTAATTTCCGAGGCAATTTCGAAATTAGGGATTCAAGAAAGGAAGCTTGTGAACTTCTACTGTCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATTTGGTAACGCATATGCTTGTCTTCTTGAGCTTCTTTATAATTCGTCCTCGATTTATGTGAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGGCCTCAGGAAGCTGAGAGTTTGGTAAAAGAAATGAAAGCCAAAGGATTTGCTCCTGCTGCATTTGAATACAGGTCCATTATTTACGCATATGGAACATTGGGGTTGTTTGAAGATATGAAGAGGAGTTTGGAAGAGATGAAGAACGATGATATTGCTTTAGACACAGTTTGTTCTAACATGGTGCTTTCATCATATGGAGCTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAATAATGAAAACTTCTGCTCTTCCTTTCTCGGTTCGGACGTACAATTCTGTCTTGAATTCATGTCCGAAGATTACGTCGATACTACAAGACAAGAGCGGCGATCTTCCAGTGTTGATTGAAGACTTGATCACGGTTCTGGACGGCGATGAGGCTTTGTTGGTTGAAGAGTTGGTTGGTTCATCTGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAGATGAAGTTGGATTTGCATGGAGTACATGTTGGTGCAGCTTATGTGATCATTTTGGAGTGGATGAAGGAGATGAGACTGAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTGTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTCTGATTAGAGAGATTATGTTTCGGACACAAAGTCCGCTGAGAATTGATCGAAAGAACACTGGTTGCTTTCTCGCCAAAGGAAAAGCTGTAAAGAATTGGGTATGTTTGAGATGAATATAACATTGTTTATGTAATGGTTCCTAGTCCACGGCTAGCAAATATTTCTTTGAACTTTTCCTTTCAGACTTCTCCTCAAGGATTTTAAAACGTGTTTGTTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGATTTCCACACTCTCATAAAGAATGCTAGGAAGAGGTTTCCACACCCTTATAAAAAATGTTTCGTTCTCCTAACCAATCGATGTGGGATCTCACAATCCACCCCCTTCGGAGCCCAGGATTTTCGCTGGCACTCGTTCCCTTCTCCAATCGATGTGGGACCCCCCAATCCACTCCCTTCGGGGCCCAATGTCCTTGCTAGCACACTATCTCGTGTCCACTCCCCTTTGGTCCTCAGCTCCTCGTAGGTACATCGTCATCCTTATTGGCACTCGTTCCCTTCTCCAATCAANCCCTTCTCCAATCGATGTGGGACCCCCCAATCCACTCCCTTCGGGGCCCAATGTCCTTGCTAGCACACTATCTCGTGTCCACTCCCCTTTGGTCCTCAGCTCCTCGTAGGTACATCGTCATCCTTATTGGCACTCGTTCCCTTCTCCAATCAATGAGAGACCCCTCAATCCACTCATTTCGAAACCCAGTGTCCTTGCTGACACACCTTCTCATGTCCACACCCTCCTTCGGGGCTCAGCCTCCTCGTTGGTACATCGTTCGGTGTCTGGCTCTGATACCATTTGTAACCGACCAAGCTCACCTCTAGCAGATATTGTCCTCTTTGAGCTTTCCCATTCGGGCTTTCTCTCAAAGATTTTAAAACGTGTCTACTAGGGAGAAGTTTCCACACGCTTATAAAGAATGTTTCGTTCTCCTCCTCAACCGACGCGGCATCTCATAGCATATATATTTCGAAACATATTGAAGTGATGGAAGAACAGATTCTCAATGTAAGATATAAAGATCAATAAGACATTTTACATGAGCTAATCAACTCAATAACACACACATACAACAGCATATTATCTTGATTTAGTAACAGGAACCAGAAAAATGAAATGGGAATGCAACTAAACAATCCCTTCGAAGTCATAGTCTCATATTGTGAGTTGATTTCCTTGTCTGCCTCACTCAACTTGCAGTGGCTCCCCAAGTAGCTGGAAGCCTAGTAGAGTTCACTGGAGGCAAGGAACAGACGTTGATATTGAGCGGTAGGAGACGATATTGCAGGTCGAGCTCTTGGAAAATTTTAACCAGTTCTTCAACCAAGAAGGCTCTCCTAGTCCACCTCTCTCCCATGTCTTGATGGTTCATTCTGTGAGTAAGCCATATTGCTATTCTCATTCTATTCAATTCTTCTACATCCTTTAGGATAATCAATGGCGCAGGACACCAGTGCTCCTTCTTGCCTTCAATGAAACTGCAGAGACAAAGCAGCATTAGAGAGGTCAGGAAATGAGGGGCTGTCTGCATTTTTATTAAACTGTGTTATCGTTTCTCCACAAACCCTAGTATTCTCTGTCTCATGATGGCAATTTTCTCAGGTGGAGTAGATATGTGAAGACAGAATTCTAAGTCATAGTCTCATATTGTGAGTTGATTTCCTTGTCTGCCTCACTCAACTTGCAGTGGCTCCCCAAGTAGCTGGAAGCCTAGTAGAGTTCACTGGAGGCAAGGAACAGACGTTGATATTGAGCGGTAGGAGACGATATTGCAGGTCGAGCTCTTGGAAAATTTTAACCAGTTCTTCAACCAAGAAGGCTCTCCTAGTCCACCTCTCTCCCATGTCTTGATGGTTCATTCTGTGAGTAAGCCATATTGCTATTCTCATTCTATTCAATTCTTCTACATCCTTTAGGATAATCAATGGCGCAGGACACCAGTGCTCCTTCTTGCCTTCAATGAAACTGCAGAGACAAAGCAGCATTAGAGAGGTCAGGAAATGAGGGGCTGTCTGCATTTTTATTAAACTGTGTTATCGTTTCTCCACAAACCCTAGTATTCTCTGTCTCATGATGGCAATTTTCTCAGGTGGAGTAGATATGTGAAGACAGAATTCTACGGCGTCACCCATGTCGGGACTGCGGTAGTAGTTGTGGATGGCCTTCGTTGCGAGAACGCTATTCGGAAATATGATCTTCTGGTTGTCGAATCGTAGAAAAACGGTCGTCAAAATGTTCATTTCTTCAACAATCATCTGAAATACAAGGATATGCAGTTTAGGACAGAGTATCAGATGGGAATGAATGTAATATTACTTGGAGAAGATGGTTACCTGCACGCCATCGATTTCGCATCGGTCTCCAACATCGAATGGATGCATCACAAATAAGAAGATGATTGCTTCAAAAACAGTCTTGCAAGTATTTCCAAATACAAATGCGACCAGTACAAGCTGAGAGGTTACAAATAGGAGAAACTTGCTGGTGGCTATACCCAGAATCAGTAGCCAAATTACCAGAATAATGACAGAAACTAAAATATTCACCATGCGGTGAAGTTTGTTCACAGCTGTTTTGGTATCGTTCAGTGTCAAAGCTAGTGCCCTCCGTTCTCTAAAGGCATTGACCTGGAACAATTTGATGCGTAATATCATTAGAGCAAGATATTAAACATGTCGAGTGAGAACACTAATGTACTTAGATTTTGATAAAGATAGCCCTTACCACCCAGTTTTTCAAGGATGATTTGCTTATTTTCCTACTCTCAGATGCTCCTTCAAATAGACTCATGGTTTTTGAAGCTTCATCTTCTACCATGAAACGCATCAAGTCCTCTAGGTAGATATATCTAACAGAAGTGGGAAAAGCTGATGAGAAATCAAGATCCAATTACATGTAAAAACACAATAGGAGATGTATTAGCAGCATCAGGGCAGCTTGGTTGGCCAACTTGTAGCATGGATCAAATTAATAGTATAAGCAAGTAAGATGGGTTGGTTTAAAACTAAGTCCAAATTGATGGTGAATCGTTAATGGGAGACGCCGTTTCGAAGTGAATATTCTTTCAATTGACATTAATGCAATTTCCTTGACCATCCTCTCTTGATGGGGCATCTTTTCTCATGATCTTTAGAAAAAGCATTGAAGTTCCTTAAAAATTCCTTCACGAGAAAGTAAAAAAGGGGCAGGTTGTATGAACTGCAAAAAGCATTTAAAGCACTTTCATGGTGTGTAGCACTTACTTGGAACCCTGCGAAGCCACGTTCTGAAAAATCCTCTTAGCAGCAACTTTTGCCTCATACTCACTCTTGATCTGGGTAGTTGATTCATCCTCATGAGCTGAATCCTTTATCTGTTCATCCAAAGTTGAAAGCGCCCCATGTCGGACAATGTTCATCAACCTCTTCATATTCCAAGCAGACACATTCTTAGGACTAAGCCTATGCAAGTGATCAATAGTTATACCCTCATCCCCTTTCTTGGATAGCGCCCGAGAAAGCTTGGCACTCCTTCCACGGGGACTTTTCTGTAGCCCTCCACTCCCTATTACCCTTCCACCCTCTGGACTTGAAAAGGCAGATGCCCTTAGATCAGGAGGAATAGTGGCCCCTGCATTCTGTAACTTCATAACCTCTTCTGC

mRNA sequence

AACCCTTTGTTAACTACTTCAACTGACCTAGTGGAGGGGTATCTGATTTTGCAGATGCGATTTACTTTTGGCGCCTAATGGAGCTCCGCTTATGCCCGCCGCCGTACGTGATTGGGGATAGCGTTCGACTCTTCTCAAAGGCACCTAAACGCTACGACGGCTTCTGCAGTTACCATTTCCGGCCAAATCTGCAGGTCAAATGTGCTACACTCACCAAACAAAGTCACCGATTCCTCTCTACTTTGGCCACAACCGCCGCCGCCGGCGACCATTCAGCTACCAATCGGTTGATTCGGAAGTTTGTTGCGAGTTCTCCGAAATCTATTACTCTCAATGTCCTCTCCGATATCCTTTCCTCTCGCACGGCTCAACCTGGACTCTGCTCTGTTGCTCTCACCTTATATTCCAGAATTACTGAGACGTCCTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTGTTGCCTTCCTCGATAAAAATGGACAGATTGTTGACTCGGAAACCCTAATTTCCGAGGCAATTTCGAAATTAGGGATTCAAGAAAGGAAGCTTGTGAACTTCTACTGTCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATTTGGTAACGCATATGCTTGTCTTCTTGAGCTTCTTTATAATTCGTCCTCGATTTATGTGAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGGCCTCAGGAAGCTGAGAGTTTGGTAAAAGAAATGAAAGCCAAAGGATTTGCTCCTGCTGCATTTGAATACAGGTCCATTATTTACGCATATGGAACATTGGGGTTGTTTGAAGATATGAAGAGGAGTTTGGAAGAGATGAAGAACGATGATATTGCTTTAGACACAGTTTGTTCTAACATGGTGCTTTCATCATATGGAGCTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAATAATGAAAACTTCTGCTCTTCCTTTCTCGGTTCGGACGTACAATTCTGTCTTGAATTCATGTCCGAAGATTACGTCGATACTACAAGACAAGAGCGGCGATCTTCCAGTGTTGATTGAAGACTTGATCACGGTTCTGGACGGCGATGAGGCTTTGTTGGTTGAAGAGTTGGTTGGTTCATCTGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAGATGAAGTTGGATTTGCATGGAGTACATGTTGGTGCAGCTTATGTGATCATTTTGGAGTGGATGAAGGAGATGAGACTGAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTGTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTCTGATTAGAGAGATTATGTTTCGGACACAAAGTCCGCTGAGAATTGATCGAAAGAACACTGTGGCTCCCCAAGTAGCTGGAAGCCTAGTAGAGTTCACTGGAGGCAAGGAACAGACGTTGATATTGAGCGGTAGGAGACGATATTGCAGGATAATCAATGGCGCAGGACACCAGTGCTCCTTCTTGCCTTCAATGAAACTGCAGAGACAAAGCAGCATTAGAGAGGTGGAGTAGATATGTGAAGACAGAATTCTAAGTCATAGTCTCATATTGTGAGTTGATTTCCTTGTCTGCCTCACTCAACTTGCAGTGGCTCCCCAAGTAGCTGGAAGCCTAGTAGAGTTCACTGGAGGCAAGGAACAGACGTTGATATTGAGCGGTAGGAGACGATATTGCAGGTCGAGCTCTTGGAAAATTTTAACCAGTTCTTCAACCAAGAAGGCTCTCCTAGTCCACCTCTCTCCCATGTCTTGATGGTTCATTCTGTGAGTAAGCCATATTGCTATTCTCATTCTATTCAATTCTTCTACATCCTTTAGGATAATCAATGGCGCAGGACACCAGTGCTCCTTCTTGCCTTCAATGAAACTGCAGAGACAAAGCAGCATTAGAGAGGTGGAGTAGATATGTGAAGACAGAATTCTACGGCGTCACCCATGTCGGGACTGCGGTAGTAGTTGTGGATGGCCTTCGTTGCGAGAACGCTATTCGGAAATATGATCTTCTGGTTGTCGAATCGTAGAAAAACGGTCGTCAAAATGTTCATTTCTTCAACAATCATCTGAAATACAAGGATATGCAGTTTAGGACAGAGTATCAGATGGGAATGAATGTAATATTACTTGGAGAAGATGGTTACCTGCACGCCATCGATTTCGCATCGGTCTCCAACATCGAATGGATGCATCACAAATAAGAAGATGATTGCTTCAAAAACAGTCTTGCAAGTATTTCCAAATACAAATGCGACCAGTACAAGCTGAGAGGTTACAAATAGGAGAAACTTGCTGGTGGCTATACCCAGAATCAGTAGCCAAATTACCAGAATAATGACAGAAACTAAAATATTCACCATGCGGTGAAGTTTGTTCACAGCTGTTTTGGTATCGTTCAGTGTCAAAGCTAGTGCCCTCCGTTCTCTAAAGGCATTGACCTGGAACAATTTGATGCGTAATATCATTAGAGCAAGATATTAAACATGTCGAGTGAGAACACTAATGTACTTAGATTTTGATAAAGATAGCCCTTACCACCCAGTTTTTCAAGGATGATTTGCTTATTTTCCTACTCTCAGATGCTCCTTCAAATAGACTCATGGTTTTTGAAGCTTCATCTTCTACCATGAAACGCATCAAGTCCTCTAGGTAGATTTACTTGGAACCCTGCGAAGCCACGTTCTGAAAAATCCTCTTAGCAGCAACTTTTGCCTCATACTCACTCTTGATCTGGGTAGTTGATTCATCCTCATGAGCTGAATCCTTTATCTGTTCATCCAAAGTTGAAAGCGCCCCATGTCGGACAATGTTCATCAACCTCTTCATATTCCAAGCAGACACATTCTTAGGACTAAGCCTATGCAAGTGATCAATAGTTATACCCTCATCCCCTTTCTTGGATAGCGCCCGAGAAAGCTTGGCACTCCTTCCACGGGGACTTTTCTGTAGCCCTCCACTCCCTATTACCCTTCCACCCTCTGGACTTGAAAAGGCAGATGCCCTTAGATCAGGAGGAATAGTGGCCCCTGCATTCTGTAACTTCATAACCTCTTCTGC

Coding sequence (CDS)

ATGGAGCTCCGCTTATGCCCGCCGCCGTACGTGATTGGGGATAGCGTTCGACTCTTCTCAAAGGCACCTAAACGCTACGACGGCTTCTGCAGTTACCATTTCCGGCCAAATCTGCAGGTCAAATGTGCTACACTCACCAAACAAAGTCACCGATTCCTCTCTACTTTGGCCACAACCGCCGCCGCCGGCGACCATTCAGCTACCAATCGGTTGATTCGGAAGTTTGTTGCGAGTTCTCCGAAATCTATTACTCTCAATGTCCTCTCCGATATCCTTTCCTCTCGCACGGCTCAACCTGGACTCTGCTCTGTTGCTCTCACCTTATATTCCAGAATTACTGAGACGTCCTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTGTTGCCTTCCTCGATAAAAATGGACAGATTGTTGACTCGGAAACCCTAATTTCCGAGGCAATTTCGAAATTAGGGATTCAAGAAAGGAAGCTTGTGAACTTCTACTGTCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATTTGGTAACGCATATGCTTGTCTTCTTGAGCTTCTTTATAATTCGTCCTCGATTTATGTGAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGGCCTCAGGAAGCTGAGAGTTTGGTAAAAGAAATGAAAGCCAAAGGATTTGCTCCTGCTGCATTTGAATACAGGTCCATTATTTACGCATATGGAACATTGGGGTTGTTTGAAGATATGAAGAGGAGTTTGGAAGAGATGAAGAACGATGATATTGCTTTAGACACAGTTTGTTCTAACATGGTGCTTTCATCATATGGAGCTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAATAATGAAAACTTCTGCTCTTCCTTTCTCGGTTCGGACGTACAATTCTGTCTTGAATTCATGTCCGAAGATTACGTCGATACTACAAGACAAGAGCGGCGATCTTCCAGTGTTGATTGAAGACTTGATCACGGTTCTGGACGGCGATGAGGCTTTGTTGGTTGAAGAGTTGGTTGGTTCATCTGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAGATGAAGTTGGATTTGCATGGAGTACATGTTGGTGCAGCTTATGTGATCATTTTGGAGTGGATGAAGGAGATGAGACTGAAGTTTGAGGATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTGATTTGTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTCTGATTAGAGAGATTATGTTTCGGACACAAAGTCCGCTGAGAATTGATCGAAAGAACACTGTGGCTCCCCAAGTAGCTGGAAGCCTAGTAGAGTTCACTGGAGGCAAGGAACAGACGTTGATATTGAGCGGTAGGAGACGATATTGCAGGATAATCAATGGCGCAGGACACCAGTGCTCCTTCTTGCCTTCAATGAAACTGCAGAGACAAAGCAGCATTAGAGAGGTGGAGTAG

Protein sequence

MELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSILQDKSGDLPVLIEDLITVLDGDEALLVEELVGSSVLKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTVAPQVAGSLVEFTGGKEQTLILSGRRRYCRIINGAGHQCSFLPSMKLQRQSSIREVE

Homology

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BLAST of Cp4.1LG16g03300.1 vs. Swiss-Prot
Match: PP157_ARATH (Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana GN=At2g17033 PE=2 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 1.7e-122
Identity = 225/401 (56.11%), Postives = 294/401 (73.32%), Query Frame = 1


Query: 45  LTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSV 104
           L K   RFLS+L++ A AGD SA NR I+KFVA+SPKS+ LNVLS +LS +T+ P L   
Sbjct: 89  LMKHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFF 148

Query: 105 ALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYC 164
           AL+LYS ITE SWF WN KL+A+L+A L+K  +  +SETL+S A+S+L   ER    F C
Sbjct: 149 ALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLC 208

Query: 165 QLVESQSKHGSERGFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVK 224
            LVES SK GS +GF  A   L E++  SSS+YVK +AY+SMV+GLC+M +P +AE +++
Sbjct: 209 NLVESNSKQGSIQGFSEASFRLREIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIE 268

Query: 225 EMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHN 284
           EM+ +   P  FEY+S++Y YG LGLF+DM R +  M  +   +DTVCSNMVLSSYGAH+
Sbjct: 269 EMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHD 328

Query: 285 KLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSILQDKSGDLPVLIEDLITVLDGDE 344
            L  M  WLQ +K   +PFS+RTYNSVLNSCP I S+L+D     PV + +L T L+ DE
Sbjct: 329 ALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTIISMLKDLD-SCPVSLSELRTFLNEDE 388

Query: 345 ALLVEELVGSSVLKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPA 404
           ALLV EL  SSVL E + W+A+E KLDLHG+H+ ++Y+I+L+WM E RL+F +E CVIPA
Sbjct: 389 ALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEKCVIPA 448

Query: 405 QVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKN 446
           ++ V+ GSG HS VRGESPVKAL+++IM RT SP+RIDRKN
Sbjct: 449 EIVVVSGSGKHSNVRGESPVKALVKKIMVRTGSPMRIDRKN 488

[Close]

BLAST of Cp4.1LG16g03300.1 vs. Swiss-Prot
Match: PP217_ARATH (Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-07
Identity = 39/146 (26.71%), Postives = 68/146 (46.58%), Query Frame = 1


Query: 178 GFGNAYACLLELLYN--SSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAA 237
           GF N      EL Y+       +  RAY  ++ G C   +  +A  L++EMK KGF P  
Sbjct: 566 GFANE---TYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTV 625

Query: 238 FEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQI 297
             Y S+I     +   ++     EE K+  I L+ V  + ++  +G   ++ +  L L+ 
Sbjct: 626 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEE 685

Query: 298 MKTSALPFSVRTYNSVLNSCPKITSI 322
           +    L  ++ T+NS+L++  K   I
Sbjct: 686 LMQKGLTPNLYTWNSLLDALVKAEEI 708

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BLAST of Cp4.1LG16g03300.1 vs. Swiss-Prot
Match: PP442_ARATH (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.4e-06
Identity = 45/185 (24.32%), Postives = 80/185 (43.24%), Query Frame = 1


Query: 129 VAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFGNAYACLLE 188
           +  + K G +  ++ L    I+   I + +    Y  L+E   +   E+     Y  L+E
Sbjct: 354 ICVMSKEGVMEKAKALFDGMIASGLIPQAQA---YASLIEGYCR---EKNVRQGYELLVE 413

Query: 189 LLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRSIIYAYGTL 248
           +     +I +    Y ++V G+CS      A ++VKEM A G  P    Y ++I  +   
Sbjct: 414 M--KKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQN 473

Query: 249 GLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSALPFSVRTY 308
             F D  R L+EMK   IA D  C N ++       ++ +   +L  M  + L  +  TY
Sbjct: 474 SRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTY 530

Query: 309 NSVLN 314
            + ++
Sbjct: 534 GAFIS 530

[Close]

BLAST of Cp4.1LG16g03300.1 vs. Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.8e-06
Identity = 48/198 (24.24%), Postives = 90/198 (45.45%), Query Frame = 1


Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKL---VNFYCQLVESQSKHGSER 180
           ++ +VA +++ L K G++  +  + +      G+QE      V  Y  L+ + +  G  R
Sbjct: 172 DNSVVAIIISMLGKEGRVSSAANMFN------GLQEDGFSLDVYSYTSLISAFANSGRYR 231

Query: 181 GFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRP-QEAESLVKEMKAKGFAPAAF 240
              N +  + E     + I      Y  ++     M  P  +  SLV++MK+ G AP A+
Sbjct: 232 EAVNVFKKMEEDGCKPTLI-----TYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAY 291

Query: 241 EYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIM 300
            Y ++I       L ++  +  EEMK    + D V  N +L  YG  ++  + +  L  M
Sbjct: 292 TYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEM 351

Query: 301 KTSALPFSVRTYNSVLNS 315
             +    S+ TYNS++++
Sbjct: 352 VLNGFSPSIVTYNSLISA 358

[Close]

BLAST of Cp4.1LG16g03300.1 vs. TrEMBL
Match: Q5DMV7_CUCME (Pentatricopeptide (PPR) repeat protein-like OS=Cucumis melo GN=PPR PE=4 SV=1)

HSP 1 Score: 705.7 bits (1820), Expect = 4.1e-200
Identity = 367/450 (81.56%), Postives = 401/450 (89.11%), Query Frame = 1


Query: 1   MELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELRLCPPPYVIGD VRLF +  KR DGF SY F PNLQVKC TLTKQ+HRFLSTL+TT 
Sbjct: 1   MELRLCPPPYVIGDGVRLFLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTG 60

Query: 61  AAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKSITL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFL +NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 181 NAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+ L ELLYNS S+YVKRRAYESMVTGLCSMKRP EAESLVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYGAHNKL DM+LWLQ MKTS+
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSS 300

Query: 301 -LPFSVRTYNSVLNSCPKITSILQD-KSGDLPVLIEDLITVLDGD-EALLVEE-LVGSSV 360
               SVRTYNSVLNSCPKITS+LQD KSGDLPVLIEDLI +LDGD EALLV+E LVGSSV
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHG HVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESNVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNT 447
           IVRGESPVKALI+EIM RT+SPLRIDRKNT
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNT 450

[Close]

BLAST of Cp4.1LG16g03300.1 vs. TrEMBL
Match: M4R4K5_CUCME (PPR OS=Cucumis melo GN=PPR PE=4 SV=1)

HSP 1 Score: 704.5 bits (1817), Expect = 9.2e-200
Identity = 367/450 (81.56%), Postives = 400/450 (88.89%), Query Frame = 1


Query: 1   MELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELRLCPPPYVIGD VRL  +  KR DGF SY F PNLQVKC TLTKQ+HRFLSTL+TTA
Sbjct: 1   MELRLCPPPYVIGDGVRLLLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTA 60

Query: 61  AAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKSITL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFL +NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 181 NAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+ L ELLYNS S+YVKRRAYESMVTGLCSMKRP EAESLVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYGAHNKL DM+LWLQ MKTS 
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSP 300

Query: 301 -LPFSVRTYNSVLNSCPKITSILQD-KSGDLPVLIEDLITVLDGD-EALLVEE-LVGSSV 360
               SVRTYNSVLNSCPKITS+LQD KSGDLPVLIEDLI +LDGD EALLV+E LVGSSV
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHG HVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESYVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNT 447
           IVRGESPVKALI+EIM RT+SPLRIDRKNT
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNT 450

[Close]

BLAST of Cp4.1LG16g03300.1 vs. TrEMBL
Match: M5VLA1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021547mg PE=4 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 1.4e-131
Identity = 245/406 (60.34%), Postives = 316/406 (77.83%), Query Frame = 1


Query: 40  VKCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQP 99
           ++CA +TKQ  RFL+ LA  A A D   TN+LI KF+ SS KSI LN LS +LS  T  P
Sbjct: 30  IQCA-VTKQGQRFLTKLA--ANARDAKVTNKLIAKFLTSSTKSIALNTLSYLLSPDTTLP 89

Query: 100 GLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKL 159
            L S+AL  YS+ITE SWF WN KLVA LVA LDK GQ  ++E LISE ISKLG +ER+L
Sbjct: 90  HLSSLALPFYSKITEASWFEWNPKLVAALVALLDKQGQHNEAEVLISETISKLGSREREL 149

Query: 160 VNFYCQLVESQSKHGSERGFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEA 219
             F+CQLVES SK  S+ GF ++Y+ L +LL+NSSS+YVK RA+ESMV+GLC M RP+EA
Sbjct: 150 ALFHCQLVESHSKLSSKHGFDSSYSYLYQLLHNSSSVYVKNRAFESMVSGLCEMDRPREA 209

Query: 220 ESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSS 279
           ++L++EM+ +G  P+ FE+RS++Y YG LGLFEDM + +E+M+N  IA+DT+CSNMVLSS
Sbjct: 210 DNLIEEMRVRGLKPSVFEFRSVVYGYGRLGLFEDMLKVVEQMENQGIAIDTICSNMVLSS 269

Query: 280 YGAHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSILQDKSGDLPVLIEDLITV 339
           YGAH++LA M++WL+ MK+ +LPFS+RTYNSVLNSC  I ++LQ+   D P  IE+L  V
Sbjct: 270 YGAHSELAAMLVWLRKMKSLSLPFSIRTYNSVLNSCLTIMAMLQEPK-DFPCSIEELNGV 329

Query: 340 LDGDEALLVEELVGSSVLKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDES 399
           L+GDEALLV+ELV S+VL EVMVW+ +E KLDLHG+H+G+AY+I+LEW + MR +F    
Sbjct: 330 LNGDEALLVKELVESTVLDEVMVWEPLEAKLDLHGMHLGSAYLILLEWFEAMRCRFNSGK 389

Query: 400 CVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKN 446
            VIPA+V VICGSG HS VRGESPVK L++++M R +SP+RIDRKN
Sbjct: 390 DVIPAEVVVICGSGKHSSVRGESPVKGLVKQMMLRMESPMRIDRKN 431

[Close]

BLAST of Cp4.1LG16g03300.1 vs. TrEMBL
Match: A0A061DXY1_THECC (Pentatricopeptide (PPR) repeat-containing protein, putative OS=Theobroma cacao GN=TCM_006548 PE=4 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 1.3e-129
Identity = 239/419 (57.04%), Postives = 313/419 (74.70%), Query Frame = 1


Query: 33  HFRPNL-QVKCAT----LTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNV 92
           H RP    +KC +    LTKQ HRF S+LA TA   D +  NRLI+KFVASSPKSI LN 
Sbjct: 17  HLRPTRPSIKCESGGVPLTKQGHRFFSSLAATADVNDPATANRLIKKFVASSPKSIALNA 76

Query: 93  LSDILSSRTAQPGLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISE 152
           LS +LS R + P L ++A  LY++I+ETSW+ WN KLVA+L+A L K G+  +SE LIS+
Sbjct: 77  LSHLLSPRNSHPHLSALAFPLYTKISETSWYNWNPKLVAELIALLVKQGRYDESEALISQ 136

Query: 153 AISKLGIQERKLVNFYCQLVESQSKHGSERGFGNAYACLLELLYNSSSIYVKRRAYESMV 212
           A+SKL  +ER LV FYC  +ES SKH S+ GF +AY  L EL+ NSSS+YVKR+ Y+SMV
Sbjct: 137 AVSKLKFRERDLVQFYCNWIESCSKHNSKEGFNDAYCYLSELICNSSSVYVKRQGYKSMV 196

Query: 213 TGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIA 272
           + LC M RP EAE+LV+EM+  G  P  FE+R I Y YG LGLFEDM+R + EM+ +   
Sbjct: 197 SSLCEMDRPNEAENLVEEMRKNGLTPTLFEFRFISYGYGQLGLFEDMERMVCEMEIEGFE 256

Query: 273 LDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSILQDKSG 332
           +DT+CSNMVLSSYGA+N  + MV WLQ MKT  +PFS+RTYNSVLNSCP+I S++Q    
Sbjct: 257 VDTICSNMVLSSYGAYNAFSKMVPWLQKMKTLQIPFSIRTYNSVLNSCPEIMSLVQGLD- 316

Query: 333 DLPVLIEDLITVLDGDEALLVEELV-GSSVLKEVMVWDAMEMKLDLHGVHVGAAYVIILE 392
            +P+ + +L  +L+ DEALLV+ELV  SSVL E M W+  E KLDLHG+H+G+AY+I+L+
Sbjct: 317 SVPLSLGELAKILNEDEALLVQELVKSSSVLDEAMEWNGSEGKLDLHGMHLGSAYLIMLQ 376

Query: 393 WMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKN 446
           W++EM+ +F+ E CVIPAQ+T++CGSG HS VRGESPVK L+R++M + +SP++IDRKN
Sbjct: 377 WIEEMKCRFKVEECVIPAQITIVCGSGKHSSVRGESPVKTLMRKMMVKMKSPMKIDRKN 434

[Close]

BLAST of Cp4.1LG16g03300.1 vs. TrEMBL
Match: B9S5H0_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0975970 PE=4 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 1.7e-129
Identity = 234/417 (56.12%), Postives = 310/417 (74.34%), Query Frame = 1


Query: 41  KCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPG 100
           +CA L+KQ  RFLS+LA     GD  ATNRLI+KFVA+SPKSI L+ LS +L+  ++   
Sbjct: 41  RCAALSKQGQRFLSSLAIATTKGDTVATNRLIKKFVAASPKSIALDALSHLLNPHSSHSH 100

Query: 101 LCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLV 160
           L S+A TLY +I E  WF WN KLVAD+VAFLDK G+  +S TL+S++ISKL ++ER L 
Sbjct: 101 LSSLAFTLYLKIAEARWFQWNPKLVADVVAFLDKQGRYDESATLVSDSISKLQVKERDLA 160

Query: 161 NFYCQLVESQSKHGSERGFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAE 220
            FYC LVESQSK  S RGF N+ A L++L+ NS+S+YVKR+ Y+SMV GLC M RP+EAE
Sbjct: 161 RFYCNLVESQSKQNSIRGFDNSVASLMQLVCNSNSVYVKRQGYKSMVNGLCEMGRPREAE 220

Query: 221 SLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSY 280
           +L++EM  +G  P+ FE++ ++YAYG+LG FE+M + L +M+     +DTVCSNM+L+SY
Sbjct: 221 TLIEEMGKEGVRPSMFEFKCVVYAYGSLGSFEEMNKCLHQMERAGFRVDTVCSNMILASY 280

Query: 281 GAHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSILQDKSGDLPVLIEDLITVL 340
           GAHN L +MVLWLQ MK   +PFS+RT NS LNSCP I S++Q+ S D P+ I DL+ +L
Sbjct: 281 GAHNALPEMVLWLQKMKDLGIPFSLRTCNSALNSCPTIMSMMQN-SNDFPISIHDLMKIL 340

Query: 341 DGDEALLVEELVGSSVLKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESC 400
             DEALLV+E+V SSVL E M WD  E KLDLHG H+ +AY+IIL W++EMR +F+  + 
Sbjct: 341 SEDEALLVKEIVTSSVLDEAMKWDVAEAKLDLHGTHLCSAYLIILLWIEEMRKRFKSVNY 400

Query: 401 VIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKNTVAPQVAGSLVE 458
           V P ++TV+CGSGNHSIVRGESPVK ++++ M R +SP+RIDR+N       G +VE
Sbjct: 401 VNPTEITVVCGSGNHSIVRGESPVKCMVKDFMVRARSPMRIDRRNIGCFIAKGKVVE 456

[Close]

BLAST of Cp4.1LG16g03300.1 vs. TAIR10
Match: AT2G17033.2 (AT2G17033.2 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 441.0 bits (1133), Expect = 9.6e-124
Identity = 225/401 (56.11%), Postives = 294/401 (73.32%), Query Frame = 1


Query: 45  LTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSV 104
           L K   RFLS+L++ A AGD SA NR I+KFVA+SPKS+ LNVLS +LS +T+ P L   
Sbjct: 89  LMKHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFF 148

Query: 105 ALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYC 164
           AL+LYS ITE SWF WN KL+A+L+A L+K  +  +SETL+S A+S+L   ER    F C
Sbjct: 149 ALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLC 208

Query: 165 QLVESQSKHGSERGFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVK 224
            LVES SK GS +GF  A   L E++  SSS+YVK +AY+SMV+GLC+M +P +AE +++
Sbjct: 209 NLVESNSKQGSIQGFSEASFRLREIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIE 268

Query: 225 EMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHN 284
           EM+ +   P  FEY+S++Y YG LGLF+DM R +  M  +   +DTVCSNMVLSSYGAH+
Sbjct: 269 EMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHD 328

Query: 285 KLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSILQDKSGDLPVLIEDLITVLDGDE 344
            L  M  WLQ +K   +PFS+RTYNSVLNSCP I S+L+D     PV + +L T L+ DE
Sbjct: 329 ALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTIISMLKDLD-SCPVSLSELRTFLNEDE 388

Query: 345 ALLVEELVGSSVLKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPA 404
           ALLV EL  SSVL E + W+A+E KLDLHG+H+ ++Y+I+L+WM E RL+F +E CVIPA
Sbjct: 389 ALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEKCVIPA 448

Query: 405 QVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKN 446
           ++ V+ GSG HS VRGESPVKAL+++IM RT SP+RIDRKN
Sbjct: 449 EIVVVSGSGKHSNVRGESPVKALVKKIMVRTGSPMRIDRKN 488

[Close]

BLAST of Cp4.1LG16g03300.1 vs. TAIR10
Match: AT3G06920.1 (AT3G06920.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 6.0e-09
Identity = 39/146 (26.71%), Postives = 68/146 (46.58%), Query Frame = 1


Query: 178 GFGNAYACLLELLYN--SSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAA 237
           GF N      EL Y+       +  RAY  ++ G C   +  +A  L++EMK KGF P  
Sbjct: 566 GFANE---TYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTV 625

Query: 238 FEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQI 297
             Y S+I     +   ++     EE K+  I L+ V  + ++  +G   ++ +  L L+ 
Sbjct: 626 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEE 685

Query: 298 MKTSALPFSVRTYNSVLNSCPKITSI 322
           +    L  ++ T+NS+L++  K   I
Sbjct: 686 LMQKGLTPNLYTWNSLLDALVKAEEI 708

[Close]

BLAST of Cp4.1LG16g03300.1 vs. TAIR10
Match: AT5G61990.1 (AT5G61990.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 1.9e-07
Identity = 45/185 (24.32%), Postives = 80/185 (43.24%), Query Frame = 1


Query: 129 VAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFGNAYACLLE 188
           +  + K G +  ++ L    I+   I + +    Y  L+E   +   E+     Y  L+E
Sbjct: 354 ICVMSKEGVMEKAKALFDGMIASGLIPQAQA---YASLIEGYCR---EKNVRQGYELLVE 413

Query: 189 LLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRSIIYAYGTL 248
           +     +I +    Y ++V G+CS      A ++VKEM A G  P    Y ++I  +   
Sbjct: 414 M--KKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQN 473

Query: 249 GLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSALPFSVRTY 308
             F D  R L+EMK   IA D  C N ++       ++ +   +L  M  + L  +  TY
Sbjct: 474 SRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTY 530

Query: 309 NSVLN 314
            + ++
Sbjct: 534 GAFIS 530

[Close]

BLAST of Cp4.1LG16g03300.1 vs. TAIR10
Match: AT5G02860.1 (AT5G02860.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 3.3e-07
Identity = 48/198 (24.24%), Postives = 90/198 (45.45%), Query Frame = 1


Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKL---VNFYCQLVESQSKHGSER 180
           ++ +VA +++ L K G++  +  + +      G+QE      V  Y  L+ + +  G  R
Sbjct: 172 DNSVVAIIISMLGKEGRVSSAANMFN------GLQEDGFSLDVYSYTSLISAFANSGRYR 231

Query: 181 GFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRP-QEAESLVKEMKAKGFAPAAF 240
              N +  + E     + I      Y  ++     M  P  +  SLV++MK+ G AP A+
Sbjct: 232 EAVNVFKKMEEDGCKPTLI-----TYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAY 291

Query: 241 EYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIM 300
            Y ++I       L ++  +  EEMK    + D V  N +L  YG  ++  + +  L  M
Sbjct: 292 TYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEM 351

Query: 301 KTSALPFSVRTYNSVLNS 315
             +    S+ TYNS++++
Sbjct: 352 VLNGFSPSIVTYNSLISA 358

[Close]

BLAST of Cp4.1LG16g03300.1 vs. TAIR10
Match: AT1G02150.1 (AT1G02150.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 9.6e-07
Identity = 38/125 (30.40%), Postives = 60/125 (48.00%), Query Frame = 1


Query: 174 GSERGFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAP 233
           G  RG  +A    L+L  N    +  RR Y S++      K  ++AE+L+  M+ KG+A 
Sbjct: 147 GKVRGIPDAEEFFLQLPEN----FKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYAL 206

Query: 234 AAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWL 293
               +  ++  Y  L  ++ +   + EMK  DI LD    N+ LSS G+   +  M L  
Sbjct: 207 HPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVY 266

Query: 294 QIMKT 299
           Q MK+
Sbjct: 267 QQMKS 267

[Close]

BLAST of Cp4.1LG16g03300.1 vs. NCBI nr
Match: gi|659119236|ref|XP_008459547.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Cucumis melo])

HSP 1 Score: 705.7 bits (1820), Expect = 5.9e-200
Identity = 367/450 (81.56%), Postives = 401/450 (89.11%), Query Frame = 1


Query: 1   MELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELRLCPPPYVIGD VRLF +  KR DGF SY F PNLQVKC TLTKQ+HRFLSTL+TT 
Sbjct: 1   MELRLCPPPYVIGDGVRLFLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTG 60

Query: 61  AAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKSITL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFL +NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 181 NAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+ L ELLYNS S+YVKRRAYESMVTGLCSMKRP EAESLVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYGAHNKL DM+LWLQ MKTS+
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSS 300

Query: 301 -LPFSVRTYNSVLNSCPKITSILQD-KSGDLPVLIEDLITVLDGD-EALLVEE-LVGSSV 360
               SVRTYNSVLNSCPKITS+LQD KSGDLPVLIEDLI +LDGD EALLV+E LVGSSV
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHG HVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESNVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNT 447
           IVRGESPVKALI+EIM RT+SPLRIDRKNT
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNT 450

[Close]

BLAST of Cp4.1LG16g03300.1 vs. NCBI nr
Match: gi|469474106|gb|AGH33847.1| (PPR [Cucumis melo])

HSP 1 Score: 704.5 bits (1817), Expect = 1.3e-199
Identity = 367/450 (81.56%), Postives = 400/450 (88.89%), Query Frame = 1


Query: 1   MELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELRLCPPPYVIGD VRL  +  KR DGF SY F PNLQVKC TLTKQ+HRFLSTL+TTA
Sbjct: 1   MELRLCPPPYVIGDGVRLLLQPLKRLDGFRSYPFLPNLQVKCTTLTKQTHRFLSTLSTTA 60

Query: 61  AAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKSITL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFL +NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGFG
Sbjct: 121 NSKLVADLVAFLGQNGLYSESEALISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFG 180

Query: 181 NAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+ L ELLYNS S+YVKRRAYESMVTGLCSMKRP EAESLVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAESLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYGAHNKL DM+LWLQ MKTS 
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMLLWLQRMKTSP 300

Query: 301 -LPFSVRTYNSVLNSCPKITSILQD-KSGDLPVLIEDLITVLDGD-EALLVEE-LVGSSV 360
               SVRTYNSVLNSCPKITS+LQD KSGDLPVLIEDLI +LDGD EALLV+E LVGSSV
Sbjct: 301 HCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIEDLIAILDGDEEALLVKELLVGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHG HVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESYVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNT 447
           IVRGESPVKALI+EIM RT+SPLRIDRKNT
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNT 450

[Close]

BLAST of Cp4.1LG16g03300.1 vs. NCBI nr
Match: gi|778707816|ref|XP_011656064.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Cucumis sativus])

HSP 1 Score: 693.7 bits (1789), Expect = 2.3e-196
Identity = 364/450 (80.89%), Postives = 398/450 (88.44%), Query Frame = 1


Query: 1   MELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTA 60
           MELRLCPPPYVIGD VRLF    KR   F SY F PNLQVKC +LTKQ+HRFLSTL+TTA
Sbjct: 1   MELRLCPPPYVIGDGVRLFLHPFKRLHAFRSYPFVPNLQVKCTSLTKQTHRFLSTLSTTA 60

Query: 61  AAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVALTLYSRITETSWFTW 120
           A GD SATNRLIRKFVASSPKSITL+VLS+I+S+ T QP LCS ALTLYSRITE SWFTW
Sbjct: 61  ATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTPQPELCSAALTLYSRITEASWFTW 120

Query: 121 NSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFG 180
           NSKLVADLVAFLD+NG   +SE LISEAISKLG QERKLVNFY QLVESQSKHG ERGF 
Sbjct: 121 NSKLVADLVAFLDQNGLYSESEVLISEAISKLGSQERKLVNFYSQLVESQSKHGFERGFV 180

Query: 181 NAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRS 240
           ++Y+ LLELLYNS S+YVKRRAYESMVTGLCSMKRP EAE+LVKEM++KG  P A+EYRS
Sbjct: 181 DSYSRLLELLYNSPSVYVKRRAYESMVTGLCSMKRPHEAENLVKEMRSKGITPTAYEYRS 240

Query: 241 IIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSA 300
           IIYAYGTLGLFE+MKRSL++M+ND+I LDTVCSNMVLSSYGAHNKL DMVLWLQ MKTS 
Sbjct: 241 IIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVLSSYGAHNKLGDMVLWLQRMKTSP 300

Query: 301 -LPFSVRTYNSVLNSCPKITSILQD-KSGDLPVLIEDLITVLDGD-EALLVEELV-GSSV 360
               SVRTYNSVLNSCPKIT++LQD KS +LPVLIEDLI VLDGD EALLVEEL+ GSSV
Sbjct: 301 HCNSSVRTYNSVLNSCPKITAMLQDHKSTNLPVLIEDLIAVLDGDEEALLVEELLAGSSV 360

Query: 361 LKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDESCVIPAQVTVICGSGNHS 420
           L E+MVWDAME+KLDLHG HVGAAYVI+L+W+KEMRL FEDES VIPAQVT+ICGSG HS
Sbjct: 361 LNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRLNFEDESYVIPAQVTLICGSGKHS 420

Query: 421 IVRGESPVKALIREIMFRTQSPLRIDRKNT 447
           IVRGESPVKALI+EIM RT+SPLRIDRKNT
Sbjct: 421 IVRGESPVKALIKEIMVRTESPLRIDRKNT 450

[Close]

BLAST of Cp4.1LG16g03300.1 vs. NCBI nr
Match: gi|595793963|ref|XP_007200730.1| (hypothetical protein PRUPE_ppa021547mg [Prunus persica])

HSP 1 Score: 478.0 bits (1229), Expect = 2.0e-131
Identity = 245/406 (60.34%), Postives = 316/406 (77.83%), Query Frame = 1


Query: 40  VKCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQP 99
           ++CA +TKQ  RFL+ LA  A A D   TN+LI KF+ SS KSI LN LS +LS  T  P
Sbjct: 30  IQCA-VTKQGQRFLTKLA--ANARDAKVTNKLIAKFLTSSTKSIALNTLSYLLSPDTTLP 89

Query: 100 GLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKL 159
            L S+AL  YS+ITE SWF WN KLVA LVA LDK GQ  ++E LISE ISKLG +ER+L
Sbjct: 90  HLSSLALPFYSKITEASWFEWNPKLVAALVALLDKQGQHNEAEVLISETISKLGSREREL 149

Query: 160 VNFYCQLVESQSKHGSERGFGNAYACLLELLYNSSSIYVKRRAYESMVTGLCSMKRPQEA 219
             F+CQLVES SK  S+ GF ++Y+ L +LL+NSSS+YVK RA+ESMV+GLC M RP+EA
Sbjct: 150 ALFHCQLVESHSKLSSKHGFDSSYSYLYQLLHNSSSVYVKNRAFESMVSGLCEMDRPREA 209

Query: 220 ESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIALDTVCSNMVLSS 279
           ++L++EM+ +G  P+ FE+RS++Y YG LGLFEDM + +E+M+N  IA+DT+CSNMVLSS
Sbjct: 210 DNLIEEMRVRGLKPSVFEFRSVVYGYGRLGLFEDMLKVVEQMENQGIAIDTICSNMVLSS 269

Query: 280 YGAHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSILQDKSGDLPVLIEDLITV 339
           YGAH++LA M++WL+ MK+ +LPFS+RTYNSVLNSC  I ++LQ+   D P  IE+L  V
Sbjct: 270 YGAHSELAAMLVWLRKMKSLSLPFSIRTYNSVLNSCLTIMAMLQEPK-DFPCSIEELNGV 329

Query: 340 LDGDEALLVEELVGSSVLKEVMVWDAMEMKLDLHGVHVGAAYVIILEWMKEMRLKFEDES 399
           L+GDEALLV+ELV S+VL EVMVW+ +E KLDLHG+H+G+AY+I+LEW + MR +F    
Sbjct: 330 LNGDEALLVKELVESTVLDEVMVWEPLEAKLDLHGMHLGSAYLILLEWFEAMRCRFNSGK 389

Query: 400 CVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKN 446
            VIPA+V VICGSG HS VRGESPVK L++++M R +SP+RIDRKN
Sbjct: 390 DVIPAEVVVICGSGKHSSVRGESPVKGLVKQMMLRMESPMRIDRKN 431

[Close]

BLAST of Cp4.1LG16g03300.1 vs. NCBI nr
Match: gi|590683980|ref|XP_007041729.1| (Pentatricopeptide (PPR) repeat-containing protein, putative [Theobroma cacao])

HSP 1 Score: 471.5 bits (1212), Expect = 1.9e-129
Identity = 239/419 (57.04%), Postives = 313/419 (74.70%), Query Frame = 1


Query: 33  HFRPNL-QVKCAT----LTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNV 92
           H RP    +KC +    LTKQ HRF S+LA TA   D +  NRLI+KFVASSPKSI LN 
Sbjct: 17  HLRPTRPSIKCESGGVPLTKQGHRFFSSLAATADVNDPATANRLIKKFVASSPKSIALNA 76

Query: 93  LSDILSSRTAQPGLCSVALTLYSRITETSWFTWNSKLVADLVAFLDKNGQIVDSETLISE 152
           LS +LS R + P L ++A  LY++I+ETSW+ WN KLVA+L+A L K G+  +SE LIS+
Sbjct: 77  LSHLLSPRNSHPHLSALAFPLYTKISETSWYNWNPKLVAELIALLVKQGRYDESEALISQ 136

Query: 153 AISKLGIQERKLVNFYCQLVESQSKHGSERGFGNAYACLLELLYNSSSIYVKRRAYESMV 212
           A+SKL  +ER LV FYC  +ES SKH S+ GF +AY  L EL+ NSSS+YVKR+ Y+SMV
Sbjct: 137 AVSKLKFRERDLVQFYCNWIESCSKHNSKEGFNDAYCYLSELICNSSSVYVKRQGYKSMV 196

Query: 213 TGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDDIA 272
           + LC M RP EAE+LV+EM+  G  P  FE+R I Y YG LGLFEDM+R + EM+ +   
Sbjct: 197 SSLCEMDRPNEAENLVEEMRKNGLTPTLFEFRFISYGYGQLGLFEDMERMVCEMEIEGFE 256

Query: 273 LDTVCSNMVLSSYGAHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSILQDKSG 332
           +DT+CSNMVLSSYGA+N  + MV WLQ MKT  +PFS+RTYNSVLNSCP+I S++Q    
Sbjct: 257 VDTICSNMVLSSYGAYNAFSKMVPWLQKMKTLQIPFSIRTYNSVLNSCPEIMSLVQGLD- 316

Query: 333 DLPVLIEDLITVLDGDEALLVEELV-GSSVLKEVMVWDAMEMKLDLHGVHVGAAYVIILE 392
            +P+ + +L  +L+ DEALLV+ELV  SSVL E M W+  E KLDLHG+H+G+AY+I+L+
Sbjct: 317 SVPLSLGELAKILNEDEALLVQELVKSSSVLDEAMEWNGSEGKLDLHGMHLGSAYLIMLQ 376

Query: 393 WMKEMRLKFEDESCVIPAQVTVICGSGNHSIVRGESPVKALIREIMFRTQSPLRIDRKN 446
           W++EM+ +F+ E CVIPAQ+T++CGSG HS VRGESPVK L+R++M + +SP++IDRKN
Sbjct: 377 WIEEMKCRFKVEECVIPAQITIVCGSGKHSSVRGESPVKTLMRKMMVKMKSPMKIDRKN 434

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g03300.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP157_ARATH	1.7e-122	56.11	Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana GN...	[more]
PP217_ARATH	1.1e-07	26.71	Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN...	[more]
PP442_ARATH	3.4e-06	24.32	Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidop...	[more]
PP362_ARATH	5.8e-06	24.24	Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cp4.1LG16g03300.1 vs. TrEMBL


Match Name	E-value	Identity	Description
Q5DMV7_CUCME	4.1e-200	81.56	Pentatricopeptide (PPR) repeat protein-like OS=Cucumis melo GN=PPR PE=4 SV=1	[more]
M4R4K5_CUCME	9.2e-200	81.56	PPR OS=Cucumis melo GN=PPR PE=4 SV=1	[more]
M5VLA1_PRUPE	1.4e-131	60.34	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021547mg PE=4 SV=1	[more]
A0A061DXY1_THECC	1.3e-129	57.04	Pentatricopeptide (PPR) repeat-containing protein, putative OS=Theobroma cacao G...	[more]
B9S5H0_RICCO	1.7e-129	56.12	Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO...	[more]

BLAST of Cp4.1LG16g03300.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G17033.2	9.6e-124	56.11	pentatricopeptide (PPR) repeat-containing protein	[more]
AT3G06920.1	6.0e-09	26.71	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G61990.1	1.9e-07	24.32	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G02860.1	3.3e-07	24.24	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G02150.1	9.6e-07	30.40	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Cp4.1LG16g03300.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119236\|ref\|XP_008459547.1\|	5.9e-200	81.56	PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Cucumis melo]	[more]
gi\|469474106\|gb\|AGH33847.1\|	1.3e-199	81.56	PPR [Cucumis melo]	[more]
gi\|778707816\|ref\|XP_011656064.1\|	2.3e-196	80.89	PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Cucumis sativu...	[more]
gi\|595793963\|ref\|XP_007200730.1\|	2.0e-131	60.34	hypothetical protein PRUPE_ppa021547mg [Prunus persica]	[more]
gi\|590683980\|ref\|XP_007041729.1\|	1.9e-129	57.04	Pentatricopeptide (PPR) repeat-containing protein, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR002625	Smr_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG16g03300	Cp4.1LG16g03300	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG16g03300.1	Cp4.1LG16g03300.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG16g03300.1:five_prime_utr:001	Cp4.1LG16g03300.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG16g03300.1:cds:001	Cp4.1LG16g03300.1:cds:001	CDS
Cp4.1LG16g03300.1:cds:002	Cp4.1LG16g03300.1:cds:002	CDS
Cp4.1LG16g03300.1:cds:003	Cp4.1LG16g03300.1:cds:003	CDS
Cp4.1LG16g03300.1:cds:004	Cp4.1LG16g03300.1:cds:004	CDS
Cp4.1LG16g03300.1:cds:005	Cp4.1LG16g03300.1:cds:005	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG16g03300.1:three_prime_utr:001	Cp4.1LG16g03300.1:three_prime_utr:001	three_prime_UTR
Cp4.1LG16g03300.1:three_prime_utr:002	Cp4.1LG16g03300.1:three_prime_utr:002	three_prime_UTR
Cp4.1LG16g03300.1:three_prime_utr:003	Cp4.1LG16g03300.1:three_prime_utr:003	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002625	Smr domain	SMART	SM00463	SMR_2	coord: 367..454 score: 7.3
IPR002625	Smr domain	PROFILE	PS50828	SMR	coord: 370..450 score: 12
IPR002625	Smr domain	unknown	SSF160443	SMR domain-like	coord: 367..436 score: 6.1
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 238..265 score: 0.59coord: 202..231 score: 3.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 202..233 score: 3.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 234..268 score: 7.695coord: 269..303 score: 6.095coord: 199..233 score: 1
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 100..479 score: 1.0E-86coord: 47..78 score: 1.0
None	No IPR available	PANTHER	PTHR24015:SF537	SUBFAMILY NOT NAMED	coord: 47..78 score: 1.0E-86coord: 100..479 score: 1.0