Cp4.1LG14g09780 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g09780
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
LocationCp4.1LG14 : 8255995 .. 8258980 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTTCGTGTCAATAGCTATTTTTCTTTCATCAGAGGCGACGAGGACTTGGACACACTGAGGGGAAATCCTTAATTCAGAATCAAGCTTTTCGTTCTAATTTCGTGTAGATTTCAGTTTTCCGGCGATCGTCGGTTGATTCGATATCTGTTCCGGCGATTTATGTTCGTCATTTCTAGCAATGTCGGTTAGTACTTCGTGAATTTCCCTCTCTTTTCATCGCGTTTGAAGATTCTGATTGCGAAGTGGAAAATCGTTGGGGAAGGATTGCATTGGGTTAGATTTGGACCCTTACGCTGTAGTTTTTCTTTGGAGTTATTACAAATTAGTGCAATGTGCGGCCAAGGGATTAGATCTCTTGTGGTTTATTTTCCCGTTTGATTTTCCCATTTGAGGGTTTTGTATCATGTCGAGATTTTCCCATTCAGTTTATCAAGAATTAGGATTTATGTTTAAGCAAATTGGTCCATTTCTATGTTTTGATCGATGAAATGTATTTTGAATCCGTTCCACGTTCGTTCCTCCTACTGAACCTGAACCTGCATAGAAGCATACATTCGAAATTAAAACCAGGAACGTCATGCCTGTAATTAATACTTCGAAGTGTGTAATTATTATTGCTGCTTGGCTTGTTGATGTCCATCGTTTTCTTGGCTGCATCCATGAGATTTTCTTTTTAGCTTTTCATTTCTTTTCTGGCCATAGCTGATTTTTTTTTTTTTTTTTACGCTCTTTCTGACTTATGTTGATCACTGTTCAGCTGTAGCAATGAATTTATGCACCTTCTTGGAGATAGTGGGAGATTTCTTGATCTTTGTCTGAACTGCTTTGTTCTGTATGTGCAGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGGTTGTGCAGGTTTTCATTTCAGTTTATGATATATATTCTTTTCGTTCAATGTTTTTATTCTTTTGCAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGTAAGTTCACTTTGTAGACAAAGTCTCTAGGTCGCGGTAATTATAAGTTTCATACCTATTGGCATTTAAGATATAACTCTCAAAGATTCCATTATTAGTGGAGCTGTGAGTCAAAGTTGAAATATTGTTGGCAATATGGTTGTTCAAGCTTAAAATGGTGTTCATGGCTGTTATTAGTGGTCACGTCACATAGCCTTCATCTAGGGAGAGGATGTTGCTTTAACAACCTCACCTGGGAGATCCCACATCGGTTGGAGAGGAGAACGAACATTTTTTATAAGGGTATGGAAACCTCTCCTAGCATATGCGTTTTAAAAACCTTGAGGAGAAGTCCGAAAGGAAAAGCCCAAAGAGGACGATATCTGCTAGCGGTGGGCTTGGGCCGTTACATCACCACTAGAAGAGATCAGCGAGCACCTTAACATTTCTTCTTCTGTTCTCTTTTACTTGTACCTTACATCATTTCCACCTCCATCCTCGGTGCGAGCCCCAATATATGTATTAGGTGGATCTTGTTGCCATTTTACAATCACATGATGTATGATATGAGTGAGCATTTTGCCACTTAACGAGTTAAATGGTCTAAGGGACACGACCTTCGGTGCAAACATCAGGAGGTCAAATTTTGGCTTGATTGCTCTTCTATTATGTGAGAGTATAAGATAGACCTTAGCTGGAAGTTTGTTCTGCATCAATAAAATTGCCCCATTTTTCCTTGAGATGCATATTGTTTGAGTTTTTTTTCTTACATTCATCACTCGTTATACTTAACGTATTAACTAATGAGAAACAGCAATACGAATCGCCCGAGCTAGTTAATTAATGGAGCTCAACTTCTTGTCAGGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCTCCTGAAGCTACCGCACCACCCCCTGTAAGATTCTTGGGACTGTTTGTTTTTTGGGCTGCTATGTGTGTCACTTTATATGATTTCTCTTAGTAGTTTACCAGCTTATTGTCTTGATTGTTGCAGGCCCCTGGAACTAATGAACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGACGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGCGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCGGAAGAAGATGAGAAAAAGAAGACGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAACCCGAACCCGCTCAAGGTCTGATCCTCTAAATTGTTGTCACGTTTGTTGATATCTATGCCTGAAAGTTCTTGTAGCTGTAATGTGTATTTCCCCTTCAAATCTGGCATGGCTATATATATATATATATTAGGATGAAAATATAGAGTAGATTTCTTCCTGAATTAGTGGTCGGACTCTTCATTGCATAAGATATCTCCATCTGCAAGAATTTTAAAACAGCAGATTTTTCATTATTGTCAACAAAGTCTCTCTGCTCTTTCTACAATGCTTATGTATCAGTGCAGTTATGGCTTGTCTTTGGATTTCAGTGATTATTT

mRNA sequence

TTGTTCGTGTCAATAGCTATTTTTCTTTCATCAGAGGCGACGAGGACTTGGACACACTGAGGGGAAATCCTTAATTCAGAATCAAGCTTTTCGTTCTAATTTCGTGTAGATTTCAGTTTTCCGGCGATCGTCGGTTGATTCGATATCTGTTCCGGCGATTTATGTTCGTCATTTCTAGCAATGTCGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCTCCTGAAGCTACCGCACCACCCCCTGCCCCTGGAACTAATGAACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGACGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGCGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCGGAAGAAGATGAGAAAAAGAAGACGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAACCCGAACCCGCTCAAGGTCTGATCCTCTAAATTGTTGTCACGTTTGTTGATATCTATGCCTGAAAGTTCTTGTAGCTGTAATGTGTATTTCCCCTTCAAATCTGGCATGGCTATATATATATATATATTAGGATGAAAATATAGAGTAGATTTCTTCCTGAATTAGTGGTCGGACTCTTCATTGCATAAGATATCTCCATCTGCAAGAATTTTAAAACAGCAGATTTTTCATTATTGTCAACAAAGTCTCTCTGCTCTTTCTACAATGCTTATGTATCAGTGCAGTTATGGCTTGTCTTTGGATTTCAGTGATTATTT

Coding sequence (CDS)

ATGTCGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCTCCTGAAGCTACCGCACCACCCCCTGCCCCTGGAACTAATGAACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGACGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGCGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCGGAAGAAGATGAGAAAAAGAAGACGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAACCCGAACCCGCTCAAGGTCTGATCCTCTAA

Protein sequence

MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEEDEKKKTTVETLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL
Homology
[Close]
BLAST of Cp4.1LG14g09780 vs. Swiss-Prot
Match: BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.0e-67
Identity = 148/255 (58.04%), Postives = 188/255 (73.73%), Query Frame = 1 

Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAILLS 62
           V++VKV N+S GA+E D+KEFFSFSG++  +++QS       AYVTFK+TQGAETA+LLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS---AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDLSVNITPCPDYVLPPEATAPPPAP-GTNEPGTAESAYQKAEDVVSSMLAKGFIL 122
           GA+I D SV I   P+Y       +PP AP    +   AES  QKAEDVVSSMLAKGFIL
Sbjct: 65  GASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKGFIL 124

Query: 123 GKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVSE 182
           GKDA+  AKAFDEKH  +STA+A VA+LD+KIG ++KL+AGT LV EK++ VDQ FQV+E
Sbjct: 125 GKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTE 184

Query: 183 KTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEE 242
           +TKS +A AE+ VS+AG+A+M NRYV +G SW A  FN+VA+AAGEVGQKTKEK+   E 
Sbjct: 185 RTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKV---EA 244

Query: 243 DEKKKTTVETLHLPE 257
           ++  +       LPE
Sbjct: 245 EQPSQPAQSQQQLPE 246

[Close]
BLAST of Cp4.1LG14g09780 vs. TrEMBL
Match: A0A0A0L545_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008890 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 1.3e-121
Identity = 240/284 (84.51%), Postives = 260/284 (91.55%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           MS+KTV+VSNVSLGASERD+KEFFSFSGDI Y+EMQSE+ERSQ AYVTFKD QGAETA+L
Sbjct: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFI 120
           LSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQL+STASAKVAT DKKIGFTEK+SAGT LV +KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSE 240
           EKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFN+VAKAAGEVGQKTKEK+ V+E
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           E++KKKT  +   +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]
BLAST of Cp4.1LG14g09780 vs. TrEMBL
Match: A9PE83_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 2.4e-96
Identity = 205/284 (72.18%), Postives = 235/284 (82.75%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           MSVKTVKVSNVSLGASERDLKEFFSFSGDI YVEM+S++ERSQIAYVTFKD+QGA+TA+L
Sbjct: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIEYVEMKSDNERSQIAYVTFKDSQGADTAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFI 120
           LSGATIVDLSV +   PDY LPP A A   A G   PG  ESA +KAEDVVS MLAKGFI
Sbjct: 61  LSGATIVDLSVTVALDPDYQLPPAALAELSATGNKAPGD-ESALRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVS 180
           LGKDA+N AK FDEKHQL+STASAKV + DKKIG TEK+SAGT +VG+KVREVDQKFQVS
Sbjct: 121 LGKDAINKAKGFDEKHQLTSTASAKVVSFDKKIGLTEKISAGTTVVGDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSE 240
           EKTKSAFAVAE+KVS+AG+AIMSNRYV +G +WV   FNKVAKAAG+VGQK KEK  ++E
Sbjct: 181 EKTKSAFAVAEQKVSSAGSAIMSNRYVFTGAAWVTGAFNKVAKAAGDVGQKAKEKAGMAE 240

Query: 241 EDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           E++K+K   +   +HL ESPKA++    +P    KP PAQGLIL
Sbjct: 241 EEQKRKMVDDFAQVHLSESPKASSASDQKPS---KPPPAQGLIL 280

[Close]
BLAST of Cp4.1LG14g09780 vs. TrEMBL
Match: B9GLU8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s02090g PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 3.1e-96
Identity = 205/284 (72.18%), Postives = 234/284 (82.39%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           MSVKTVKVSNVSLGASERDLKEFFSFSGDI YVEM+S++ERSQIAYVTFKD+QGA+TA+L
Sbjct: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIEYVEMKSDNERSQIAYVTFKDSQGADTAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFI 120
           LSGATIVDLSV +   PDY LPP A A   A G   PG  ESA +KAEDVVS MLAKGFI
Sbjct: 61  LSGATIVDLSVTVALDPDYQLPPAALAELSATGNKAPGD-ESALRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVS 180
           LGKDA+N AK FDEKHQL+STASAKV + DKKIG TEK+SAGT +VG+KVREVDQKFQVS
Sbjct: 121 LGKDAINKAKGFDEKHQLTSTASAKVVSFDKKIGLTEKISAGTTVVGDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSE 240
           EKTKSAFAVAE+KVS+AG+AIMSNRYV +G +WV   FNKVAKAAG+VGQK KEK  ++E
Sbjct: 181 EKTKSAFAVAEQKVSSAGSAIMSNRYVFTGAAWVTGAFNKVAKAAGDVGQKAKEKAGMAE 240

Query: 241 EDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           E++K+K   +   +HL ESPKA+     +P    KP PAQGLIL
Sbjct: 241 EEQKRKMVDDFAQVHLSESPKASGASDQKPS---KPPPAQGLIL 280

[Close]
BLAST of Cp4.1LG14g09780 vs. TrEMBL
Match: A0A061G7T0_THECC (RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 OS=Theobroma cacao GN=TCM_016568 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 5.3e-96
Identity = 200/282 (70.92%), Postives = 232/282 (82.27%), Query Frame = 1 

Query: 2   SVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAILL 61
           S+KTVKVSNVSLGA++RD+KEFFSFSGDI YVEMQS++E+SQ+AYVTFKD+QGAETA+LL
Sbjct: 3   SIKTVKVSNVSLGATQRDVKEFFSFSGDIEYVEMQSDNEQSQVAYVTFKDSQGAETAVLL 62

Query: 62  SGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFIL 121
           +GA IVDLSV+IT  PDY LPP A  PP A     PG  +SA +KAEDVVS MLAKGFIL
Sbjct: 63  TGAIIVDLSVSITLAPDYKLPPAAFLPPSAIQNKTPGGGDSAIRKAEDVVSGMLAKGFIL 122

Query: 122 GKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVSE 181
           GKDA+N AK FDEKHQL+STASAKVA+ DKKIGFTEK++AGT +V  KVREVDQKFQVSE
Sbjct: 123 GKDAVNKAKTFDEKHQLTSTASAKVASFDKKIGFTEKITAGTTVVSGKVREVDQKFQVSE 182

Query: 182 KTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEE 241
           KTKSAFA AE+KVS+AG+AIM NRYV +G SWV   FNKVAKAAG+VGQKTKEK+  +EE
Sbjct: 183 KTKSAFAAAEQKVSSAGSAIMKNRYVFTGASWVTGAFNKVAKAAGDVGQKTKEKVGEAEE 242

Query: 242 DEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLI 282
           + K+K   +   +HL ESPKA+A   P  Q   KP PAQGLI
Sbjct: 243 ERKRKVVDDFAQIHLSESPKASA---PSEQPLSKPAPAQGLI 281

[Close]
BLAST of Cp4.1LG14g09780 vs. TrEMBL
Match: A0A059BZT5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00244 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 6.9e-96
Identity = 201/285 (70.53%), Postives = 234/285 (82.11%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           MS+ TVKVSNVSLGA+ERDLKEFFSFSGDIAYVEM S++ERSQ+AYVTFKD QGAETAI+
Sbjct: 1   MSLTTVKVSNVSLGATERDLKEFFSFSGDIAYVEMHSDTERSQVAYVTFKDAQGAETAIM 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNE-PGTAESAYQKAEDVVSSMLAKGF 120
           LSGATIVD+SV+I   PDY LPP+A APP     N+ P   +SA +KAEDVV+SMLAKGF
Sbjct: 61  LSGATIVDMSVSIAHAPDYKLPPDAIAPPVKVTENKSPAGGDSALRKAEDVVTSMLAKGF 120

Query: 121 ILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQV 180
           ILGKDA+N AK+ DEKHQL+STAS+KVA+ DKKIG TEK+S GT +VG KVREVDQKFQV
Sbjct: 121 ILGKDAVNKAKSLDEKHQLTSTASSKVASFDKKIGLTEKISVGTAVVGGKVREVDQKFQV 180

Query: 181 SEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVS 240
           SEKTKSAF  AE+KVS+AG+AIM NRYV +G SWV   FNKVAKAAGEVGQKTKEK+ ++
Sbjct: 181 SEKTKSAFVAAEQKVSSAGSAIMKNRYVFTGASWVTGAFNKVAKAAGEVGQKTKEKVGMA 240

Query: 241 EEDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           EE++K+K   +   +HL ESPKA A   P+P    K EP QGLIL
Sbjct: 241 EEEQKRKVVDDFAQIHLSESPKATASAEPKPS---KHEPVQGLIL 282

[Close]
BLAST of Cp4.1LG14g09780 vs. TAIR10
Match: AT4G17720.1 (AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 327.0 bits (837), Expect = 1.1e-89
Identity = 181/265 (68.30%), Postives = 216/265 (81.51%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           M++ TVKVSNVSLGA++RDLKEFFSFSGDI Y+E QSE+ER+++AYVTFKD QGAETA+L
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAP-PPAPGTNEPGTAESAYQKAEDVVSSMLAKGF 120
           LSGATIVD SV ++  PDY L PEA A   P      P   +S  +KAEDVVSSMLAKGF
Sbjct: 61  LSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLAKGF 120

Query: 121 ILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQV 180
           ILGKDA+  AK+ DEKHQL+STASAKVA+ DKKIGFT+K++ GTV+VGEKVREVDQK+QV
Sbjct: 121 ILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQKYQV 180

Query: 181 SEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVS 240
           SEKTKSA A AE+ VSNAG+AIM NRYV +G +WV   FNKVAKAA EVGQK KEK+ ++
Sbjct: 181 SEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGMA 240

Query: 241 EEDEKKKTTVE--TLHLPESPKAAA 263
           EE++K+K   E   +HL ESPKAA+
Sbjct: 241 EEEDKRKVVDEFARVHLSESPKAAS 265

[Close]
BLAST of Cp4.1LG14g09780 vs. TAIR10
Match: AT5G46870.1 (AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 302.4 bits (773), Expect = 3.0e-82
Identity = 167/269 (62.08%), Postives = 212/269 (78.81%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           MS+ TVKVSNVSL A+ERDLKEFFSFSGDIAY+E QSE++ S++AYVTFKD QGAETA+L
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAE-----SAYQKAEDVVSSML 120
           L+G+TIVD SV +T  PDY LPP+A A   +   +   ++      S ++KAEDVVS M+
Sbjct: 61  LTGSTIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMI 120

Query: 121 AKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQ 180
           +KGF+LGKDA+  AK+ DEKHQL+STASA+V + DK+IGFTEK++ GT +V EKV+EVDQ
Sbjct: 121 SKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQ 180

Query: 181 KFQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEK 240
           KFQV+EKTKSA A AE+ VSNAG+AIM NRYV +G +WV   FN+V+KAA EVGQK KEK
Sbjct: 181 KFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKAKEK 240

Query: 241 IAVSEEDEKKK----TTVETLHLPESPKA 261
           + ++EE+E++K      V  +HL ESPKA
Sbjct: 241 VGLAEEEEEEKKKVVDEVAIVHLTESPKA 269

[Close]
BLAST of Cp4.1LG14g09780 vs. TAIR10
Match: AT5G16840.2 (AT5G16840.2 binding partner of acd11 1)

HSP 1 Score: 261.5 bits (667), Expect = 5.8e-70
Identity = 150/255 (58.82%), Postives = 191/255 (74.90%), Query Frame = 1 

Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAILLS 62
           V++VKV N+S GA+E D+KEFFSFSG++  +++QS +E S  AYVTFK+TQGAETA+LLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDLSVNITPCPDYVLPPEATAPPPAP-GTNEPGTAESAYQKAEDVVSSMLAKGFIL 122
           GA+I D SV I   P+Y       +PP AP    +   AES  QKAEDVVSSMLAKGFIL
Sbjct: 65  GASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKGFIL 124

Query: 123 GKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVSE 182
           GKDA+  AKAFDEKH  +STA+A VA+LD+KIG ++KL+AGT LV EK++ VDQ FQV+E
Sbjct: 125 GKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTE 184

Query: 183 KTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEE 242
           +TKS +A AE+ VS+AG+A+M NRYV +G SW A  FN+VA+AAGEVGQKTKEK+   E 
Sbjct: 185 RTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKV---EA 244

Query: 243 DEKKKTTVETLHLPE 257
           ++  +       LPE
Sbjct: 245 EQPSQPAQSQQQLPE 247

[Close]
BLAST of Cp4.1LG14g09780 vs. TAIR10
Match: AT1G67950.3 (AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 237.7 bits (605), Expect = 9.0e-63
Identity = 140/263 (53.23%), Postives = 183/263 (69.58%), Query Frame = 1 

Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAILLS 62
           VKTVK+SNVSL  S++D+KEFFSFSGDI YVEM+SE++ SQ+AYVTFKD+QGAETA+LL+
Sbjct: 28  VKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAMLLT 87

Query: 63  GATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFILG 122
           GA I DL V+ITP  +Y LPPEA A      + E      + +KAEDVV+ M+ +G+ LG
Sbjct: 88  GAVIADLRVSITPAVNYQLPPEALALD----SQEHSFNGFSVKKAEDVVNIMVGRGYALG 147

Query: 123 KDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVSEK 182
           KDA+  AKAFD++H L S ASA +A+LD K+G +EKLS GT +V EK+R++D+++QV E 
Sbjct: 148 KDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVVNEKLRDIDERYQVREI 207

Query: 183 TKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEED 242
           TKSA A AEE   +A  A+M+N YV SG SW ++ F  V KA        KEK+    E 
Sbjct: 208 TKSALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKA-------VKEKVENGGEG 267

Query: 243 EKKKTTVETLHLPESPKAAAPVP 266
            K+  T++    P SPK  A VP
Sbjct: 268 RKEIITLD----PSSPKVPAVVP 275

[Close]
BLAST of Cp4.1LG14g09780 vs. TAIR10
Match: AT5G32450.1 (AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-53
Identity = 122/261 (46.74%), Postives = 170/261 (65.13%), Query Frame = 1 

Query: 2   SVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAILL 61
           + ++V+V+NVS  A+ER++ EFFSFSGDI ++E+Q E  +S+IA+VTF D +  E A+LL
Sbjct: 3   TTRSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLL 62

Query: 62  SGATIVDLSVNITPCPDYV--------------LPPEATAPPPAPGTNEPGTAESAYQKA 121
           SGATIVD  V IT   +YV              +P           TN  G + +   KA
Sbjct: 63  SGATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYVSKA 122

Query: 122 EDVVSSMLAKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVG 181
           +DVV+++LAKG  LG+DA+N AKAFDEKHQL + ASAKV++ DK++G TEKLS G   V 
Sbjct: 123 QDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISAVN 182

Query: 182 EKVREVDQKFQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGE 241
           EKV+ VDQK QVS+KT +A   AE K+++ G+A+ S+RYV +G +W +  F+KVA+    
Sbjct: 183 EKVKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARVGQV 242

Query: 242 VGQKTKEKIAVSEEDEKKKTT 249
            G KTKEK  ++  +   K T
Sbjct: 243 AGSKTKEKFNLAVSNMSSKDT 263

[Close]
BLAST of Cp4.1LG14g09780 vs. NCBI nr
Match: gi|659095580|ref|XP_008448657.1| (PREDICTED: uncharacterized protein LOC103490760 isoform X1 [Cucumis melo])

HSP 1 Score: 448.4 bits (1152), Expect = 9.5e-123
Identity = 243/284 (85.56%), Postives = 261/284 (91.90%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           MS+KTVKVSNVSLGASERD+KEFFSFSGDI Y+EMQSE+ERSQ AYVTFKD QGAETA+L
Sbjct: 1   MSIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFI 120
           LSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQL+STASAKVATLDKKIGFTEK+SAGT LV +KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSE 240
           EKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFNKVAKAAGEVGQKTKEK+ V+E
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           E++KKKT  +   +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]
BLAST of Cp4.1LG14g09780 vs. NCBI nr
Match: gi|659095582|ref|XP_008448658.1| (PREDICTED: uncharacterized protein LOC103490760 isoform X2 [Cucumis melo])

HSP 1 Score: 446.8 bits (1148), Expect = 2.8e-122
Identity = 242/284 (85.21%), Postives = 260/284 (91.55%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           M +KTVKVSNVSLGASERD+KEFFSFSGDI Y+EMQSE+ERSQ AYVTFKD QGAETA+L
Sbjct: 1   MQIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFI 120
           LSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQL+STASAKVATLDKKIGFTEK+SAGT LV +KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSE 240
           EKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFNKVAKAAGEVGQKTKEK+ V+E
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           E++KKKT  +   +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]
BLAST of Cp4.1LG14g09780 vs. NCBI nr
Match: gi|449462041|ref|XP_004148750.1| (PREDICTED: uncharacterized protein LOC101207930 isoform X1 [Cucumis sativus])

HSP 1 Score: 444.1 bits (1141), Expect = 1.8e-121
Identity = 240/284 (84.51%), Postives = 260/284 (91.55%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           MS+KTV+VSNVSLGASERD+KEFFSFSGDI Y+EMQSE+ERSQ AYVTFKD QGAETA+L
Sbjct: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFI 120
           LSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQL+STASAKVAT DKKIGFTEK+SAGT LV +KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSE 240
           EKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFN+VAKAAGEVGQKTKEK+ V+E
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           E++KKKT  +   +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]
BLAST of Cp4.1LG14g09780 vs. NCBI nr
Match: gi|778675001|ref|XP_011650336.1| (PREDICTED: uncharacterized protein LOC101207930 isoform X2 [Cucumis sativus])

HSP 1 Score: 442.6 bits (1137), Expect = 5.2e-121
Identity = 239/284 (84.15%), Postives = 259/284 (91.20%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           M +KTV+VSNVSLGASERD+KEFFSFSGDI Y+EMQSE+ERSQ AYVTFKD QGAETA+L
Sbjct: 1   MQIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFI 120
           LSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQL+STASAKVAT DKKIGFTEK+SAGT LV +KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSE 240
           EKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFN+VAKAAGEVGQKTKEK+ V+E
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           E++KKKT  +   +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]
BLAST of Cp4.1LG14g09780 vs. NCBI nr
Match: gi|743809448|ref|XP_011018509.1| (PREDICTED: uncharacterized protein LOC105121532 isoform X1 [Populus euphratica])

HSP 1 Score: 360.1 bits (923), Expect = 3.4e-96
Identity = 204/284 (71.83%), Postives = 234/284 (82.39%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           MSVKTVKVSNVSLGASERDLKEFFSFSGDI YVEM+S++ERSQIAYVTFKD+QGA+TA+L
Sbjct: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIEYVEMKSDNERSQIAYVTFKDSQGADTAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFI 120
           LSGATIVDLSV +   PDY LPP A A   A G   PG  ESA++KAEDVVS MLAKGFI
Sbjct: 61  LSGATIVDLSVTVALDPDYELPPAALAELSATGNKAPGD-ESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVS 180
           LGKDA+N AK FDEKHQL+STASAKV + DKKIG TEK+SAGT +VG+KVREVDQKFQVS
Sbjct: 121 LGKDAINKAKGFDEKHQLTSTASAKVVSFDKKIGLTEKISAGTTVVGDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSE 240
           EKTKSAFA AE+KVS AG+AIMSNRYV +G +WV   FNKVAKAAG+VGQK KEK+ ++E
Sbjct: 181 EKTKSAFAAAEQKVSTAGSAIMSNRYVFTGAAWVTGAFNKVAKAAGDVGQKAKEKVGMAE 240

Query: 241 EDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           E++K+K   +   +HL ESPKA+     +P    KP PAQGLIL
Sbjct: 241 EEQKRKMVDDFAQVHLSESPKASDASDQKPS---KPPPAQGLIL 280

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g09780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BPA1_ARATH2.0e-6758.04Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1[more]
BLAST of Cp4.1LG14g09780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L545_CUCSA1.3e-12184.51Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008890 PE=4 SV=1[more]
A9PE83_POPTR2.4e-9672.18Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
B9GLU8_POPTR3.1e-9672.18Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s02090g PE=4 SV=1[more]
A0A061G7T0_THECC5.3e-9670.92RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 OS=Theobroma cacao GN=... [more]
A0A059BZT5_EUCGR6.9e-9670.53Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00244 PE=4 SV=1[more]
BLAST of Cp4.1LG14g09780 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G17720.11.1e-8968.30 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G46870.13.0e-8262.08 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G16840.25.8e-7058.82 binding partner of acd11 1[more]
AT1G67950.39.0e-6353.23 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G32450.11.3e-5346.74 RNA binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Cp4.1LG14g09780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659095580|ref|XP_008448657.1|9.5e-12385.56PREDICTED: uncharacterized protein LOC103490760 isoform X1 [Cucumis melo][more]
gi|659095582|ref|XP_008448658.1|2.8e-12285.21PREDICTED: uncharacterized protein LOC103490760 isoform X2 [Cucumis melo][more]
gi|449462041|ref|XP_004148750.1|1.8e-12184.51PREDICTED: uncharacterized protein LOC101207930 isoform X1 [Cucumis sativus][more]
gi|778675001|ref|XP_011650336.1|5.2e-12184.15PREDICTED: uncharacterized protein LOC101207930 isoform X2 [Cucumis sativus][more]
gi|743809448|ref|XP_011018509.1|3.4e-9671.83PREDICTED: uncharacterized protein LOC105121532 isoform X1 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0019348 dolichol metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0030176 integral component of endoplasmic reticulum membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0030234 enzyme regulator activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g09780.1Cp4.1LG14g09780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 7..66
score: 1.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 5..74
score: 5.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 4..78
score: 10
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 4..71
score: 5.
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 3..76
score: 1.15

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g09780Cucsa.322000Cucumber (Gy14) v1cgycpeB0845
Cp4.1LG14g09780CmaCh16G011770Cucurbita maxima (Rimu)cmacpeB345
Cp4.1LG14g09780CmaCh06G006370Cucurbita maxima (Rimu)cmacpeB817
Cp4.1LG14g09780CmoCh06G006420Cucurbita moschata (Rifu)cmocpeB771
Cp4.1LG14g09780CmoCh16G012270Cucurbita moschata (Rifu)cmocpeB308
Cp4.1LG14g09780Cla008827Watermelon (97103) v1cpewmB202
Cp4.1LG14g09780Csa3G008890Cucumber (Chinese Long) v2cpecuB212
Cp4.1LG14g09780MELO3C013833Melon (DHL92) v3.5.1cpemeB184
Cp4.1LG14g09780ClCG10G001390Watermelon (Charleston Gray)cpewcgB193
Cp4.1LG14g09780CSPI03G01420Wild cucumber (PI 183967)cpecpiB215
Cp4.1LG14g09780Lsi07G011750Bottle gourd (USVL1VR-Ls)cpelsiB183
Cp4.1LG14g09780MELO3C013833.2Melon (DHL92) v3.6.1cpemedB231
Cp4.1LG14g09780CsaV3_3G001470Cucumber (Chinese Long) v3cpecucB0255
Cp4.1LG14g09780Bhi11G000007Wax gourdcpewgoB0279
Cp4.1LG14g09780CsGy3G001330Cucumber (Gy14) v2cgybcpeB325
Cp4.1LG14g09780Carg23599Silver-seed gourdcarcpeB1461
Cp4.1LG14g09780Carg23395Silver-seed gourdcarcpeB1334
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG14g09780Cp4.1LG08g08680Cucurbita pepo (Zucchini)cpecpeB249
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g09780Melon (DHL92) v3.6.1cpemedB221
Cp4.1LG14g09780Silver-seed gourdcarcpeB1089
Cp4.1LG14g09780Silver-seed gourdcarcpeB1343
Cp4.1LG14g09780Cucumber (Chinese Long) v3cpecucB0260
Cp4.1LG14g09780Wax gourdcpewgoB0301
Cp4.1LG14g09780Cucurbita pepo (Zucchini)cpecpeB231
Cp4.1LG14g09780Cucurbita pepo (Zucchini)cpecpeB248
Cp4.1LG14g09780Cucumber (Gy14) v1cgycpeB0816
Cp4.1LG14g09780Cucurbita maxima (Rimu)cmacpeB521
Cp4.1LG14g09780Cucurbita maxima (Rimu)cmacpeB607
Cp4.1LG14g09780Cucurbita moschata (Rifu)cmocpeB480
Cp4.1LG14g09780Cucurbita moschata (Rifu)cmocpeB556
Cp4.1LG14g09780Wild cucumber (PI 183967)cpecpiB219
Cp4.1LG14g09780Cucumber (Chinese Long) v2cpecuB216
Cp4.1LG14g09780Bottle gourd (USVL1VR-Ls)cpelsiB162
Cp4.1LG14g09780Watermelon (Charleston Gray)cpewcgB188
Cp4.1LG14g09780Watermelon (97103) v1cpewmB201
Cp4.1LG14g09780Melon (DHL92) v3.5.1cpemeB183
Cp4.1LG14g09780Cucumber (Gy14) v2cgybcpeB330