CmoCh16G012270 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G012270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNucleic acid binding protein, putative
LocationCmo_Chr16 : 8790149 .. 8792914 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTTCATCAGGGGCGACGAAGACTTGGACACACTGAGAGGCAATCCTAAATTCAGAATCAAGCTTTTCGTTCTAATTTCGTGTAGATTTCAGTTTTCCGGCGATCGTCGGTTGATTCGATATCTGTTCCGGCGATTTATGTTCGTCATTTCTAGCAATGTCGGTTAGTACTTCGTGAATTTCCCTCTCTTTTCATCGCGTTTGAAGATTCTGATTGCGAAGTGGAAAATCGTTGGGGAAGGATTCCATTGGGTTAGATTTGGACCCTTACTCTGTAGTTTTTCTTTGGAGTTATTACAAATTAGTGCAATGTGCGGCCAAGGGATTAGATCTCTTGTGGTTTATTTTCCCGTTTGATTTTCCCATTTGAGGGTTTTGTATCATGTCGAGATTTTCCCATTCAGTGTATCAAGAATTAGGATTTATGTTTAAGCAAATTGGTCCATTTCTATGTTTTGATCGATGAAATGTATTTTGAATCTGTTCCACGTTCGTTCCTCCTACTGAACCTGGACCTGCATAGAAGCATACATTCGAAATTAAAACCAGGAACGTCATGCCTGTAATTAATACTTCGAAGTGTGTAATCTTCGCTCCCTTTGGATTACTATTGCTGCTTGGCTTGTTGATGTCCATCGTTTTCTTGGCTGCACCCATGAGATTTTCCTTTTTGCTTTTCATTTCTTTTCTGGACATAGCTGATTTTTTTTACTCTCTTTCTGACTTATGTTGATCACTGTTCAGCTGTAGCAATGAATTTATGCACCTTCTTGGAGATAGTGGGAGATTTCTTGATCTTTGTCTGAACTGCTTTGTTCTGTATGTGCAGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGGTTGTGCAGGTTTTCATTTCAGTTTATGATATATATTCTTTTCGTTCAATGTTTTTATTCTTTTGCAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGTAAGTTCACTTTGTAGACAAAGTCTCTAGGTCGCGGTAATTATAAGTTTCATACCTATTGGCATTTAAGATATAACTCTCAAAGATTCCATTATTAGTGGAGCTGTGAGTCAAAGTTGAAATATTGTTGGCAATATGGTTGTTCAAGCTTAAAATGGTGTTCATGGCTGTTATTAGTGGTCACGTCACATAGCCTTCATCTAGGGAGAGGATGTTGCTATAACAACCTCACCTGGGAGATTCCACATCGGTTGAGGAGGAGAACGAACATTTTTTATAAGGGTATGGAAACCTCTCCTAGCATATGCGTTGTAAAAACCTTGAGGAGAAGTCCGAAAGAAAAAGCCCAAAGAGGACGATATCTGCTAGCGGTGGGCTTGGGCCGTTACATCACCACTAGAAGAGATCAGCGAGCACCTTAGCATTTCTTCTTCTGTTCTCTTTTACTTGTACCTTACATCATTTCCACCTCCATCCTCGGTGCGAGCCCCAATATATGTATTAGATGGATCTTGTTGCCATTTTACAATCACATGATGTATGATATGAGTGAGCATTTTGCCACTTAACGAGTTAAATGGTCTAAGGGACACGACCTTCGGTGCAAACATCAGGAGGTCAAATTTTGGCTTGATTGCTCTTCTATTATGTGGGAGTATAAGATAGACCTTAGCTGGAAGTTTGTTCTGCATCAATAAAATTGCCCCATTTCTCTTTCCTTGAGATGCATATTGTTTGATTTTTTTTCTTACATTCATCACTCGTTATACTTAACGTATTAACTAATGAGAAACAGCAATACGAATCGCCCGAGCTAGTTAATTAATGGAGCTCAACTTCTTGTCAGGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCCCCTGAAGCTACCGCACCACCCCCTGTAAGATTCTTGGGACTGTTTGTTTTTTGGGCTGCTATGTGTGTCACTTTATATGATTTCTCTTAGTTTACCAGCTTATTGTCTTGATTGTTGCAGGCCCCTGGAACTAATGCACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGATGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGCGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCTGAAGAAGATCAGAAAAAGAAGATGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAGCCCGAACCCGCTCAAGGTCTGATCCTCTAAATTGTTGTCACATTTGTTGATATCTATGCCTGAAAGTTCTTGTAGCTGTAATGTGTATTTCACCTTCAAATCTGGCATGGCT

mRNA sequence

TTCTTTCATCAGGGGCGACGAAGACTTGGACACACTGAGAGGCAATCCTAAATTCAGAATCAAGCTTTTCGTTCTAATTTCGTGTAGATTTCAGTTTTCCGGCGATCGTCGGTTGATTCGATATCTGTTCCGGCGATTTATGTTCGTCATTTCTAGCAATGTCGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGGTTGTGCAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCCCCTGAAGCTACCGCACCACCCCCTGCCCCTGGAACTAATGCACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGATGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGCGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCTGAAGAAGATCAGAAAAAGAAGATGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAGCCCGAACCCGCTCAAGGTCTGATCCTCTAAATTGTTGTCACATTTGTTGATATCTATGCCTGAAAGTTCTTGTAGCTGTAATGTGTATTTCACCTTCAAATCTGGCATGGCT

Coding sequence (CDS)

ATGTCGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGGTTGTGCAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCCCCTGAAGCTACCGCACCACCCCCTGCCCCTGGAACTAATGCACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGATGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGCGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCTGAAGAAGATCAGAAAAAGAAGATGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAGCCCGAACCCGCTCAAGGTCTGATCCTCTAA
Homology
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BLAST of CmoCh16G012270 vs. Swiss-Prot
Match: BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 5.7e-67
Identity = 150/258 (58.14%), Postives = 190/258 (73.64%), Query Frame = 1 

Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAETAI 62
           V++VKV N+S GA+E D+KEFFSFSG++  +++Q     +E S  AYVTFK+TQGAETA+
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQ----SNEHS--AYVTFKETQGAETAV 64

Query: 63  LLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGT-AESAYQKAEDVVSSMLAKG 122
           LLSGA+I D SV I   P+Y       +PP AP      + AES  QKAEDVVSSMLAKG
Sbjct: 65  LLSGASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKG 124

Query: 123 FILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQ 182
           FILGKDA+  AKAFDEKH  +STA+A VA+LD+KIG ++KL+AGT LV EK++ VDQ FQ
Sbjct: 125 FILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQ 184

Query: 183 VSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAV 242
           V+E+TKS +A AE+ VS+AG+A+M NRYV +G SW A  FN+VA+AAGEVGQKTKEK+  
Sbjct: 185 VTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKV-- 244

Query: 243 SEEDQKKKMTVETLHLPE 260
            E +Q  +       LPE
Sbjct: 245 -EAEQPSQPAQSQQQLPE 246

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BLAST of CmoCh16G012270 vs. TrEMBL
Match: A0A0A0L545_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008890 PE=4 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 4.1e-120
Identity = 243/288 (84.38%), Postives = 261/288 (90.62%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MS+KTV+VSNVSLGASERD+KEFFSFSGDI Y+EMQ   SE+ERSQ AYVTFKD QGAET
Sbjct: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQ---SETERSQTAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDALNSAKAFDEKHQL+STASAKVAT DKKIGFTEK+SAGT LV +KVREVDQKF
Sbjct: 121 GFILGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFN+VAKAAGEVGQKTKEK+ 
Sbjct: 181 QVSEKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVV 240

Query: 241 VSEEDQKKKMTVE---TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           V+EE+QKKK TVE    +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 VTEEEQKKK-TVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

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BLAST of CmoCh16G012270 vs. TrEMBL
Match: A9PE83_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.4e-96
Identity = 208/287 (72.47%), Postives = 237/287 (82.58%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MSVKTVKVSNVSLGASERDLKEFFSFSGDI YVEM+   S++ERSQIAYVTFKD+QGA+T
Sbjct: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIEYVEMK---SDNERSQIAYVTFKDSQGADT 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSV +   PDY LPP A A   A G  APG  ESA +KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVTVALDPDYQLPPAALAELSATGNKAPGD-ESALRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDA+N AK FDEKHQL+STASAKV + DKKIG TEK+SAGT +VG+KVREVDQKF
Sbjct: 121 GFILGKDAINKAKGFDEKHQLTSTASAKVVSFDKKIGLTEKISAGTTVVGDKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAFAVAE+KVS+AG+AIMSNRYV +G +WV   FNKVAKAAG+VGQK KEK  
Sbjct: 181 QVSEKTKSAFAVAEQKVSSAGSAIMSNRYVFTGAAWVTGAFNKVAKAAGDVGQKAKEKAG 240

Query: 241 VSEEDQKKKMTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           ++EE+QK+KM  +   +HL ESPKA++    +P    KP PAQGLIL
Sbjct: 241 MAEEEQKRKMVDDFAQVHLSESPKASSASDQKPS---KPPPAQGLIL 280

[Close]
BLAST of CmoCh16G012270 vs. TrEMBL
Match: B9GLU8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s02090g PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 1.8e-96
Identity = 208/287 (72.47%), Postives = 236/287 (82.23%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MSVKTVKVSNVSLGASERDLKEFFSFSGDI YVEM+   S++ERSQIAYVTFKD+QGA+T
Sbjct: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIEYVEMK---SDNERSQIAYVTFKDSQGADT 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSV +   PDY LPP A A   A G  APG  ESA +KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVTVALDPDYQLPPAALAELSATGNKAPGD-ESALRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDA+N AK FDEKHQL+STASAKV + DKKIG TEK+SAGT +VG+KVREVDQKF
Sbjct: 121 GFILGKDAINKAKGFDEKHQLTSTASAKVVSFDKKIGLTEKISAGTTVVGDKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAFAVAE+KVS+AG+AIMSNRYV +G +WV   FNKVAKAAG+VGQK KEK  
Sbjct: 181 QVSEKTKSAFAVAEQKVSSAGSAIMSNRYVFTGAAWVTGAFNKVAKAAGDVGQKAKEKAG 240

Query: 241 VSEEDQKKKMTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           ++EE+QK+KM  +   +HL ESPKA+     +P    KP PAQGLIL
Sbjct: 241 MAEEEQKRKMVDDFAQVHLSESPKASGASDQKPS---KPPPAQGLIL 280

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BLAST of CmoCh16G012270 vs. TrEMBL
Match: A0A067JY86_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19366 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 2.0e-95
Identity = 205/288 (71.18%), Postives = 235/288 (81.60%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MSVKTVKVSNVSLGA+ERDLKEFFSFSGDI YVE+QR   ++E SQ AYVTFKD+QGAET
Sbjct: 1   MSVKTVKVSNVSLGATERDLKEFFSFSGDIEYVEVQR---DNEHSQTAYVTFKDSQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSV ITP PDY LPPEA A      T  PG AESA++KAEDVVSSMLAK
Sbjct: 61  AVLLSGATIVDLSVTITPDPDYQLPPEALASSATENTT-PGGAESAFRKAEDVVSSMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           G+ILGKDA+N AK  DEKHQL+ +ASAKVA+ DKKIG TEK+SAGT +VG+KVREVDQK+
Sbjct: 121 GYILGKDAVNKAKTLDEKHQLTKSASAKVASFDKKIGLTEKISAGTTVVGDKVREVDQKY 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTK+AFA AE+KVS AG+AIM NRYV +G +WV   FN+VAK AGEVGQK KEK+ 
Sbjct: 181 QVSEKTKTAFAAAEQKVSTAGSAIMKNRYVFTGAAWVTGAFNRVAKKAGEVGQKAKEKVG 240

Query: 241 VSEEDQKKKMTVE--TLHLPESPKAAAPVPPEPQQRP-KPEPAQGLIL 286
           V+EE+QK+KM  E   +HL ESPKA+     E +Q P KP P QGLIL
Sbjct: 241 VAEEEQKRKMVDEFAHVHLSESPKASG----ESEQPPSKPAPVQGLIL 280

[Close]
BLAST of CmoCh16G012270 vs. TrEMBL
Match: A0A059C040_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00244 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 4.5e-95
Identity = 201/287 (70.03%), Postives = 234/287 (81.53%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MS+ TVKVSNVSLGA+ERDLKEFFSFSGDIAYVEM    S++ERSQ+AYVTFKD QGAET
Sbjct: 1   MSLTTVKVSNVSLGATERDLKEFFSFSGDIAYVEMH---SDTERSQVAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           AI+LSGATIVD+SV+I   PDY LPP+A A PP     +P   +SA +KAEDVV+SMLAK
Sbjct: 61  AIMLSGATIVDMSVSIAHAPDYKLPPDAIA-PPVTENKSPAGGDSALRKAEDVVTSMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDA+N AK+ DEKHQL+STAS+KVA+ DKKIG TEK+S GT +VG KVREVDQKF
Sbjct: 121 GFILGKDAVNKAKSLDEKHQLTSTASSKVASFDKKIGLTEKISVGTAVVGGKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAF  AE+KVS+AG+AIM NRYV +G SWV   FNKVAKAAGEVGQKTKEK+ 
Sbjct: 181 QVSEKTKSAFVAAEQKVSSAGSAIMKNRYVFTGASWVTGAFNKVAKAAGEVGQKTKEKVG 240

Query: 241 VSEEDQKKKMTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           ++EE+QK+K+  +   +HL ESPKA A   P+P    K EP QGLIL
Sbjct: 241 MAEEEQKRKVVDDFAQIHLSESPKATASAEPKPS---KHEPVQGLIL 280

[Close]
BLAST of CmoCh16G012270 vs. TAIR10
Match: AT4G17720.1 (AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 322.4 bits (825), Expect = 2.8e-88
Identity = 181/268 (67.54%), Postives = 217/268 (80.97%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           M++ TVKVSNVSLGA++RDLKEFFSFSGDI Y+E Q   SE+ER+++AYVTFKD QGAET
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQ---SETERTKLAYVTFKDLQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAP-PPAPGTNAPGTAESAYQKAEDVVSSMLA 120
           A+LLSGATIVD SV ++  PDY L PEA A   P     +P   +S  +KAEDVVSSMLA
Sbjct: 61  AVLLSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLA 120

Query: 121 KGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQK 180
           KGFILGKDA+  AK+ DEKHQL+STASAKVA+ DKKIGFT+K++ GTV+VGEKVREVDQK
Sbjct: 121 KGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQK 180

Query: 181 FQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKI 240
           +QVSEKTKSA A AE+ VSNAG+AIM NRYV +G +WV   FNKVAKAA EVGQK KEK+
Sbjct: 181 YQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKV 240

Query: 241 AVSEEDQKKKMTVE--TLHLPESPKAAA 266
            ++EE+ K+K+  E   +HL ESPKAA+
Sbjct: 241 GMAEEEDKRKVVDEFARVHLSESPKAAS 265

[Close]
BLAST of CmoCh16G012270 vs. TAIR10
Match: AT5G46870.1 (AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 296.2 bits (757), Expect = 2.2e-80
Identity = 168/272 (61.76%), Postives = 213/272 (78.31%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MS+ TVKVSNVSL A+ERDLKEFFSFSGDIAY+E Q   SE++ S++AYVTFKD QGAET
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQ---SENDGSKLAYVTFKDLQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPA---PGTNAPGTAE--SAYQKAEDVVS 120
           A+LL+G+TIVD SV +T  PDY LPP+A A   +      ++  T E  S ++KAEDVVS
Sbjct: 61  AVLLTGSTIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVS 120

Query: 121 SMLAKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVRE 180
            M++KGF+LGKDA+  AK+ DEKHQL+STASA+V + DK+IGFTEK++ GT +V EKV+E
Sbjct: 121 GMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKE 180

Query: 181 VDQKFQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKT 240
           VDQKFQV+EKTKSA A AE+ VSNAG+AIM NRYV +G +WV   FN+V+KAA EVGQK 
Sbjct: 181 VDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKA 240

Query: 241 KEKIAVSEEDQKKKM----TVETLHLPESPKA 264
           KEK+ ++EE++++K      V  +HL ESPKA
Sbjct: 241 KEKVGLAEEEEEEKKKVVDEVAIVHLTESPKA 269

[Close]
BLAST of CmoCh16G012270 vs. TAIR10
Match: AT5G16840.2 (AT5G16840.2 binding partner of acd11 1)

HSP 1 Score: 257.7 bits (657), Expect = 8.5e-69
Identity = 151/258 (58.53%), Postives = 191/258 (74.03%), Query Frame = 1 

Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAETAI 62
           V++VKV N+S GA+E D+KEFFSFSG++  +++Q   S +E S  AYVTFK+TQGAETA+
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQ---SSNEHS--AYVTFKETQGAETAV 64

Query: 63  LLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGT-AESAYQKAEDVVSSMLAKG 122
           LLSGA+I D SV I   P+Y       +PP AP      + AES  QKAEDVVSSMLAKG
Sbjct: 65  LLSGASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKG 124

Query: 123 FILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQ 182
           FILGKDA+  AKAFDEKH  +STA+A VA+LD+KIG ++KL+AGT LV EK++ VDQ FQ
Sbjct: 125 FILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQ 184

Query: 183 VSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAV 242
           V+E+TKS +A AE+ VS+AG+A+M NRYV +G SW A  FN+VA+AAGEVGQKTKEK+  
Sbjct: 185 VTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKV-- 244

Query: 243 SEEDQKKKMTVETLHLPE 260
            E +Q  +       LPE
Sbjct: 245 -EAEQPSQPAQSQQQLPE 247

[Close]
BLAST of CmoCh16G012270 vs. TAIR10
Match: AT1G67950.3 (AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 232.6 bits (592), Expect = 2.9e-61
Identity = 139/266 (52.26%), Postives = 184/266 (69.17%), Query Frame = 1 

Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAETAI 62
           VKTVK+SNVSL  S++D+KEFFSFSGDI YVEM+   SE++ SQ+AYVTFKD+QGAETA+
Sbjct: 28  VKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMR---SETQESQVAYVTFKDSQGAETAM 87

Query: 63  LLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAKGF 122
           LL+GA I DL V+ITP  +Y LPPEA     A  +        + +KAEDVV+ M+ +G+
Sbjct: 88  LLTGAVIADLRVSITPAVNYQLPPEAL----ALDSQEHSFNGFSVKKAEDVVNIMVGRGY 147

Query: 123 ILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQV 182
            LGKDA+  AKAFD++H L S ASA +A+LD K+G +EKLS GT +V EK+R++D+++QV
Sbjct: 148 ALGKDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVVNEKLRDIDERYQV 207

Query: 183 SEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVS 242
            E TKSA A AEE   +A  A+M+N YV SG SW ++ F  V KA        KEK+   
Sbjct: 208 REITKSALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKA-------VKEKVENG 267

Query: 243 EEDQKKKMTVETLHLPESPKAAAPVP 269
            E +K+ +T++    P SPK  A VP
Sbjct: 268 GEGRKEIITLD----PSSPKVPAVVP 275

[Close]
BLAST of CmoCh16G012270 vs. TAIR10
Match: AT5G32450.1 (AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-52
Identity = 122/264 (46.21%), Postives = 171/264 (64.77%), Query Frame = 1 

Query: 2   SVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAETA 61
           + ++V+V+NVS  A+ER++ EFFSFSGDI ++E+Q+   E  +S+IA+VTF D +  E A
Sbjct: 3   TTRSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQK---EFGQSRIAFVTFTDPKALEIA 62

Query: 62  ILLSGATIVDLSVNITPCPDYV--------------LPPEATAPPPAPGTNAPGTAESAY 121
           +LLSGATIVD  V IT   +YV              +P           TN  G + +  
Sbjct: 63  LLLSGATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYV 122

Query: 122 QKAEDVVSSMLAKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTV 181
            KA+DVV+++LAKG  LG+DA+N AKAFDEKHQL + ASAKV++ DK++G TEKLS G  
Sbjct: 123 SKAQDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGIS 182

Query: 182 LVGEKVREVDQKFQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKA 241
            V EKV+ VDQK QVS+KT +A   AE K+++ G+A+ S+RYV +G +W +  F+KVA+ 
Sbjct: 183 AVNEKVKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARV 242

Query: 242 AGEVGQKTKEKIAVSEEDQKKKMT 252
               G KTKEK  ++  +   K T
Sbjct: 243 GQVAGSKTKEKFNLAVSNMSSKDT 263

[Close]
BLAST of CmoCh16G012270 vs. NCBI nr
Match: gi|659095580|ref|XP_008448657.1| (PREDICTED: uncharacterized protein LOC103490760 isoform X1 [Cucumis melo])

HSP 1 Score: 443.4 bits (1139), Expect = 3.1e-121
Identity = 246/288 (85.42%), Postives = 262/288 (90.97%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MS+KTVKVSNVSLGASERD+KEFFSFSGDI Y+EMQ   SE+ERSQ AYVTFKD QGAET
Sbjct: 1   MSIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQ---SETERSQTAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDALNSAKAFDEKHQL+STASAKVATLDKKIGFTEK+SAGT LV +KVREVDQKF
Sbjct: 121 GFILGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFNKVAKAAGEVGQKTKEK+ 
Sbjct: 181 QVSEKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVV 240

Query: 241 VSEEDQKKKMTVE---TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           V+EE+QKKK TVE    +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 VTEEEQKKK-TVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]
BLAST of CmoCh16G012270 vs. NCBI nr
Match: gi|659095582|ref|XP_008448658.1| (PREDICTED: uncharacterized protein LOC103490760 isoform X2 [Cucumis melo])

HSP 1 Score: 441.8 bits (1135), Expect = 9.0e-121
Identity = 245/288 (85.07%), Postives = 261/288 (90.62%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           M +KTVKVSNVSLGASERD+KEFFSFSGDI Y+EMQ   SE+ERSQ AYVTFKD QGAET
Sbjct: 1   MQIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQ---SETERSQTAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDALNSAKAFDEKHQL+STASAKVATLDKKIGFTEK+SAGT LV +KVREVDQKF
Sbjct: 121 GFILGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFNKVAKAAGEVGQKTKEK+ 
Sbjct: 181 QVSEKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVV 240

Query: 241 VSEEDQKKKMTVE---TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           V+EE+QKKK TVE    +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 VTEEEQKKK-TVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]
BLAST of CmoCh16G012270 vs. NCBI nr
Match: gi|449462041|ref|XP_004148750.1| (PREDICTED: uncharacterized protein LOC101207930 isoform X1 [Cucumis sativus])

HSP 1 Score: 439.1 bits (1128), Expect = 5.8e-120
Identity = 243/288 (84.38%), Postives = 261/288 (90.62%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MS+KTV+VSNVSLGASERD+KEFFSFSGDI Y+EMQ   SE+ERSQ AYVTFKD QGAET
Sbjct: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQ---SETERSQTAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDALNSAKAFDEKHQL+STASAKVAT DKKIGFTEK+SAGT LV +KVREVDQKF
Sbjct: 121 GFILGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFN+VAKAAGEVGQKTKEK+ 
Sbjct: 181 QVSEKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVV 240

Query: 241 VSEEDQKKKMTVE---TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           V+EE+QKKK TVE    +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 VTEEEQKKK-TVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]
BLAST of CmoCh16G012270 vs. NCBI nr
Match: gi|778675001|ref|XP_011650336.1| (PREDICTED: uncharacterized protein LOC101207930 isoform X2 [Cucumis sativus])

HSP 1 Score: 437.6 bits (1124), Expect = 1.7e-119
Identity = 242/288 (84.03%), Postives = 260/288 (90.28%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           M +KTV+VSNVSLGASERD+KEFFSFSGDI Y+EMQ   SE+ERSQ AYVTFKD QGAET
Sbjct: 1   MQIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQ---SETERSQTAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDALNSAKAFDEKHQL+STASAKVAT DKKIGFTEK+SAGT LV +KVREVDQKF
Sbjct: 121 GFILGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFN+VAKAAGEVGQKTKEK+ 
Sbjct: 181 QVSEKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVV 240

Query: 241 VSEEDQKKKMTVE---TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           V+EE+QKKK TVE    +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 VTEEEQKKK-TVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]
BLAST of CmoCh16G012270 vs. NCBI nr
Match: gi|743809448|ref|XP_011018509.1| (PREDICTED: uncharacterized protein LOC105121532 isoform X1 [Populus euphratica])

HSP 1 Score: 360.9 bits (925), Expect = 2.0e-96
Identity = 207/287 (72.13%), Postives = 236/287 (82.23%), Query Frame = 1 

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MSVKTVKVSNVSLGASERDLKEFFSFSGDI YVEM+   S++ERSQIAYVTFKD+QGA+T
Sbjct: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIEYVEMK---SDNERSQIAYVTFKDSQGADT 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSV +   PDY LPP A A   A G  APG  ESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVTVALDPDYELPPAALAELSATGNKAPGD-ESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDA+N AK FDEKHQL+STASAKV + DKKIG TEK+SAGT +VG+KVREVDQKF
Sbjct: 121 GFILGKDAINKAKGFDEKHQLTSTASAKVVSFDKKIGLTEKISAGTTVVGDKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAFA AE+KVS AG+AIMSNRYV +G +WV   FNKVAKAAG+VGQK KEK+ 
Sbjct: 181 QVSEKTKSAFAAAEQKVSTAGSAIMSNRYVFTGAAWVTGAFNKVAKAAGDVGQKAKEKVG 240

Query: 241 VSEEDQKKKMTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           ++EE+QK+KM  +   +HL ESPKA+     +P    KP PAQGLIL
Sbjct: 241 MAEEEQKRKMVDDFAQVHLSESPKASDASDQKPS---KPPPAQGLIL 280

The following BLAST results are available for this feature:
BLAST of CmoCh16G012270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BPA1_ARATH5.7e-6758.14Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1[more]
BLAST of CmoCh16G012270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L545_CUCSA4.1e-12084.38Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008890 PE=4 SV=1[more]
A9PE83_POPTR1.4e-9672.47Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
B9GLU8_POPTR1.8e-9672.47Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s02090g PE=4 SV=1[more]
A0A067JY86_JATCU2.0e-9571.18Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19366 PE=4 SV=1[more]
A0A059C040_EUCGR4.5e-9570.03Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00244 PE=4 SV=1[more]
BLAST of CmoCh16G012270 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G17720.12.8e-8867.54 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G46870.12.2e-8061.76 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G16840.28.5e-6958.53 binding partner of acd11 1[more]
AT1G67950.32.9e-6152.26 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G32450.11.5e-5246.21 RNA binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CmoCh16G012270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659095580|ref|XP_008448657.1|3.1e-12185.42PREDICTED: uncharacterized protein LOC103490760 isoform X1 [Cucumis melo][more]
gi|659095582|ref|XP_008448658.1|9.0e-12185.07PREDICTED: uncharacterized protein LOC103490760 isoform X2 [Cucumis melo][more]
gi|449462041|ref|XP_004148750.1|5.8e-12084.38PREDICTED: uncharacterized protein LOC101207930 isoform X1 [Cucumis sativus][more]
gi|778675001|ref|XP_011650336.1|1.7e-11984.03PREDICTED: uncharacterized protein LOC101207930 isoform X2 [Cucumis sativus][more]
gi|743809448|ref|XP_011018509.1|2.0e-9672.13PREDICTED: uncharacterized protein LOC105121532 isoform X1 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0019348 dolichol metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0030176 integral component of endoplasmic reticulum membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0030234 enzyme regulator activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G012270.1CmoCh16G012270.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 7..69
score: 4.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 5..77
score: 5.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 4..81
score: 10
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 4..74
score: 6.
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 3..79
score: 4.34

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G012270Cucsa.322000Cucumber (Gy14) v1cgycmoB0885
CmoCh16G012270CmaCh16G011770Cucurbita maxima (Rimu)cmacmoB323
CmoCh16G012270CmaCh06G006370Cucurbita maxima (Rimu)cmacmoB807
CmoCh16G012270Cla008827Watermelon (97103) v1cmowmB285
CmoCh16G012270Csa3G008890Cucumber (Chinese Long) v2cmocuB316
CmoCh16G012270MELO3C013833Melon (DHL92) v3.5.1cmomeB284
CmoCh16G012270ClCG10G001390Watermelon (Charleston Gray)cmowcgB276
CmoCh16G012270CSPI03G01420Wild cucumber (PI 183967)cmocpiB323
CmoCh16G012270Lsi07G011750Bottle gourd (USVL1VR-Ls)cmolsiB313
CmoCh16G012270Cp4.1LG14g09780Cucurbita pepo (Zucchini)cmocpeB308
CmoCh16G012270Cp4.1LG08g08680Cucurbita pepo (Zucchini)cmocpeB327
CmoCh16G012270MELO3C013833.2Melon (DHL92) v3.6.1cmomedB329
CmoCh16G012270CsaV3_3G001470Cucumber (Chinese Long) v3cmocucB0377
CmoCh16G012270Cla97C10G186000Watermelon (97103) v2cmowmbB320
CmoCh16G012270Bhi11G000007Wax gourdcmowgoB0419
CmoCh16G012270CsGy3G001330Cucumber (Gy14) v2cgybcmoB310
CmoCh16G012270Carg23599Silver-seed gourdcarcmoB1407
CmoCh16G012270Carg23395Silver-seed gourdcarcmoB1291
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh16G012270CmoCh06G006420Cucurbita moschata (Rifu)cmocmoB293
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G012270Watermelon (97103) v2cmowmbB342
CmoCh16G012270Wax gourdcmowgoB0441
CmoCh16G012270Cucurbita moschata (Rifu)cmocmoB277
CmoCh16G012270Cucurbita moschata (Rifu)cmocmoB278
CmoCh16G012270Cucumber (Gy14) v1cgycmoB0861
CmoCh16G012270Cucurbita maxima (Rimu)cmacmoB504
CmoCh16G012270Cucurbita maxima (Rimu)cmacmoB585
CmoCh16G012270Wild cucumber (PI 183967)cmocpiB327
CmoCh16G012270Cucumber (Chinese Long) v2cmocuB319
CmoCh16G012270Melon (DHL92) v3.5.1cmomeB281
CmoCh16G012270Watermelon (Charleston Gray)cmowcgB271
CmoCh16G012270Watermelon (97103) v1cmowmB284
CmoCh16G012270Cucurbita pepo (Zucchini)cmocpeB310
CmoCh16G012270Cucurbita pepo (Zucchini)cmocpeB324
CmoCh16G012270Bottle gourd (USVL1VR-Ls)cmolsiB285
CmoCh16G012270Cucumber (Gy14) v2cgybcmoB315
CmoCh16G012270Melon (DHL92) v3.6.1cmomedB319
CmoCh16G012270Silver-seed gourdcarcmoB1050
CmoCh16G012270Silver-seed gourdcarcmoB1300
CmoCh16G012270Cucumber (Chinese Long) v3cmocucB0382