CmoCh16G012270.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G012270.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Nucleic acid binding protein, putative
Location	Cmo_Chr16 : 8790149 .. 8792914 (+)
Sequence length	1098

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTTCATCAGGGGCGACGAAGACTTGGACACACTGAGAGGCAATCCTAAATTCAGAATCAAGCTTTTCGTTCTAATTTCGTGTAGATTTCAGTTTTCCGGCGATCGTCGGTTGATTCGATATCTGTTCCGGCGATTTATGTTCGTCATTTCTAGCAATGTCGGTTAGTACTTCGTGAATTTCCCTCTCTTTTCATCGCGTTTGAAGATTCTGATTGCGAAGTGGAAAATCGTTGGGGAAGGATTCCATTGGGTTAGATTTGGACCCTTACTCTGTAGTTTTTCTTTGGAGTTATTACAAATTAGTGCAATGTGCGGCCAAGGGATTAGATCTCTTGTGGTTTATTTTCCCGTTTGATTTTCCCATTTGAGGGTTTTGTATCATGTCGAGATTTTCCCATTCAGTGTATCAAGAATTAGGATTTATGTTTAAGCAAATTGGTCCATTTCTATGTTTTGATCGATGAAATGTATTTTGAATCTGTTCCACGTTCGTTCCTCCTACTGAACCTGGACCTGCATAGAAGCATACATTCGAAATTAAAACCAGGAACGTCATGCCTGTAATTAATACTTCGAAGTGTGTAATCTTCGCTCCCTTTGGATTACTATTGCTGCTTGGCTTGTTGATGTCCATCGTTTTCTTGGCTGCACCCATGAGATTTTCCTTTTTGCTTTTCATTTCTTTTCTGGACATAGCTGATTTTTTTTACTCTCTTTCTGACTTATGTTGATCACTGTTCAGCTGTAGCAATGAATTTATGCACCTTCTTGGAGATAGTGGGAGATTTCTTGATCTTTGTCTGAACTGCTTTGTTCTGTATGTGCAGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGGTTGTGCAGGTTTTCATTTCAGTTTATGATATATATTCTTTTCGTTCAATGTTTTTATTCTTTTGCAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGTAAGTTCACTTTGTAGACAAAGTCTCTAGGTCGCGGTAATTATAAGTTTCATACCTATTGGCATTTAAGATATAACTCTCAAAGATTCCATTATTAGTGGAGCTGTGAGTCAAAGTTGAAATATTGTTGGCAATATGGTTGTTCAAGCTTAAAATGGTGTTCATGGCTGTTATTAGTGGTCACGTCACATAGCCTTCATCTAGGGAGAGGATGTTGCTATAACAACCTCACCTGGGAGATTCCACATCGGTTGAGGAGGAGAACGAACATTTTTTATAAGGGTATGGAAACCTCTCCTAGCATATGCGTTGTAAAAACCTTGAGGAGAAGTCCGAAAGAAAAAGCCCAAAGAGGACGATATCTGCTAGCGGTGGGCTTGGGCCGTTACATCACCACTAGAAGAGATCAGCGAGCACCTTAGCATTTCTTCTTCTGTTCTCTTTTACTTGTACCTTACATCATTTCCACCTCCATCCTCGGTGCGAGCCCCAATATATGTATTAGATGGATCTTGTTGCCATTTTACAATCACATGATGTATGATATGAGTGAGCATTTTGCCACTTAACGAGTTAAATGGTCTAAGGGACACGACCTTCGGTGCAAACATCAGGAGGTCAAATTTTGGCTTGATTGCTCTTCTATTATGTGGGAGTATAAGATAGACCTTAGCTGGAAGTTTGTTCTGCATCAATAAAATTGCCCCATTTCTCTTTCCTTGAGATGCATATTGTTTGATTTTTTTTCTTACATTCATCACTCGTTATACTTAACGTATTAACTAATGAGAAACAGCAATACGAATCGCCCGAGCTAGTTAATTAATGGAGCTCAACTTCTTGTCAGGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCCCCTGAAGCTACCGCACCACCCCCTGTAAGATTCTTGGGACTGTTTGTTTTTTGGGCTGCTATGTGTGTCACTTTATATGATTTCTCTTAGTTTACCAGCTTATTGTCTTGATTGTTGCAGGCCCCTGGAACTAATGCACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGATGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGCGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCTGAAGAAGATCAGAAAAAGAAGATGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAGCCCGAACCCGCTCAAGGTCTGATCCTCTAAATTGTTGTCACATTTGTTGATATCTATGCCTGAAAGTTCTTGTAGCTGTAATGTGTATTTCACCTTCAAATCTGGCATGGCT

mRNA sequence

TTCTTTCATCAGGGGCGACGAAGACTTGGACACACTGAGAGGCAATCCTAAATTCAGAATCAAGCTTTTCGTTCTAATTTCGTGTAGATTTCAGTTTTCCGGCGATCGTCGGTTGATTCGATATCTGTTCCGGCGATTTATGTTCGTCATTTCTAGCAATGTCGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGGTTGTGCAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCCCCTGAAGCTACCGCACCACCCCCTGCCCCTGGAACTAATGCACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGATGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGCGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCTGAAGAAGATCAGAAAAAGAAGATGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAGCCCGAACCCGCTCAAGGTCTGATCCTCTAAATTGTTGTCACATTTGTTGATATCTATGCCTGAAAGTTCTTGTAGCTGTAATGTGTATTTCACCTTCAAATCTGGCATGGCT

Coding sequence (CDS)

ATGTCGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGGTTGTGCAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCCCCTGAAGCTACCGCACCACCCCCTGCCCCTGGAACTAATGCACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGATGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGCGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCTGAAGAAGATCAGAAAAAGAAGATGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAGCCCGAACCCGCTCAAGGTCTGATCCTCTAA

Homology

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BLAST of CmoCh16G012270.1 vs. Swiss-Prot
Match: BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 5.7e-67
Identity = 150/258 (58.14%), Postives = 190/258 (73.64%), Query Frame = 1


Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAETAI 62
           V++VKV N+S GA+E D+KEFFSFSG++  +++Q     +E S  AYVTFK+TQGAETA+
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQ----SNEHS--AYVTFKETQGAETAV 64

Query: 63  LLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGT-AESAYQKAEDVVSSMLAKG 122
           LLSGA+I D SV I   P+Y       +PP AP      + AES  QKAEDVVSSMLAKG
Sbjct: 65  LLSGASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKG 124

Query: 123 FILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQ 182
           FILGKDA+  AKAFDEKH  +STA+A VA+LD+KIG ++KL+AGT LV EK++ VDQ FQ
Sbjct: 125 FILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQ 184

Query: 183 VSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAV 242
           V+E+TKS +A AE+ VS+AG+A+M NRYV +G SW A  FN+VA+AAGEVGQKTKEK+  
Sbjct: 185 VTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKV-- 244

Query: 243 SEEDQKKKMTVETLHLPE 260
            E +Q  +       LPE
Sbjct: 245 -EAEQPSQPAQSQQQLPE 246

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BLAST of CmoCh16G012270.1 vs. TrEMBL
Match: A0A0A0L545_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008890 PE=4 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 4.1e-120
Identity = 243/288 (84.38%), Postives = 261/288 (90.62%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MS+KTV+VSNVSLGASERD+KEFFSFSGDI Y+EMQ   SE+ERSQ AYVTFKD QGAET
Sbjct: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQ---SETERSQTAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDALNSAKAFDEKHQL+STASAKVAT DKKIGFTEK+SAGT LV +KVREVDQKF
Sbjct: 121 GFILGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFN+VAKAAGEVGQKTKEK+ 
Sbjct: 181 QVSEKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVV 240

Query: 241 VSEEDQKKKMTVE---TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           V+EE+QKKK TVE    +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 VTEEEQKKK-TVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

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BLAST of CmoCh16G012270.1 vs. TrEMBL
Match: A9PE83_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.4e-96
Identity = 208/287 (72.47%), Postives = 237/287 (82.58%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MSVKTVKVSNVSLGASERDLKEFFSFSGDI YVEM+   S++ERSQIAYVTFKD+QGA+T
Sbjct: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIEYVEMK---SDNERSQIAYVTFKDSQGADT 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSV +   PDY LPP A A   A G  APG  ESA +KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVTVALDPDYQLPPAALAELSATGNKAPGD-ESALRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDA+N AK FDEKHQL+STASAKV + DKKIG TEK+SAGT +VG+KVREVDQKF
Sbjct: 121 GFILGKDAINKAKGFDEKHQLTSTASAKVVSFDKKIGLTEKISAGTTVVGDKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAFAVAE+KVS+AG+AIMSNRYV +G +WV   FNKVAKAAG+VGQK KEK  
Sbjct: 181 QVSEKTKSAFAVAEQKVSSAGSAIMSNRYVFTGAAWVTGAFNKVAKAAGDVGQKAKEKAG 240

Query: 241 VSEEDQKKKMTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           ++EE+QK+KM  +   +HL ESPKA++    +P    KP PAQGLIL
Sbjct: 241 MAEEEQKRKMVDDFAQVHLSESPKASSASDQKPS---KPPPAQGLIL 280

[Close]

BLAST of CmoCh16G012270.1 vs. TrEMBL
Match: B9GLU8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s02090g PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 1.8e-96
Identity = 208/287 (72.47%), Postives = 236/287 (82.23%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MSVKTVKVSNVSLGASERDLKEFFSFSGDI YVEM+   S++ERSQIAYVTFKD+QGA+T
Sbjct: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIEYVEMK---SDNERSQIAYVTFKDSQGADT 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSV +   PDY LPP A A   A G  APG  ESA +KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVTVALDPDYQLPPAALAELSATGNKAPGD-ESALRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDA+N AK FDEKHQL+STASAKV + DKKIG TEK+SAGT +VG+KVREVDQKF
Sbjct: 121 GFILGKDAINKAKGFDEKHQLTSTASAKVVSFDKKIGLTEKISAGTTVVGDKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAFAVAE+KVS+AG+AIMSNRYV +G +WV   FNKVAKAAG+VGQK KEK  
Sbjct: 181 QVSEKTKSAFAVAEQKVSSAGSAIMSNRYVFTGAAWVTGAFNKVAKAAGDVGQKAKEKAG 240

Query: 241 VSEEDQKKKMTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           ++EE+QK+KM  +   +HL ESPKA+     +P    KP PAQGLIL
Sbjct: 241 MAEEEQKRKMVDDFAQVHLSESPKASGASDQKPS---KPPPAQGLIL 280

[Close]

BLAST of CmoCh16G012270.1 vs. TrEMBL
Match: A0A067JY86_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19366 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 2.0e-95
Identity = 205/288 (71.18%), Postives = 235/288 (81.60%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MSVKTVKVSNVSLGA+ERDLKEFFSFSGDI YVE+QR   ++E SQ AYVTFKD+QGAET
Sbjct: 1   MSVKTVKVSNVSLGATERDLKEFFSFSGDIEYVEVQR---DNEHSQTAYVTFKDSQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSV ITP PDY LPPEA A      T  PG AESA++KAEDVVSSMLAK
Sbjct: 61  AVLLSGATIVDLSVTITPDPDYQLPPEALASSATENTT-PGGAESAFRKAEDVVSSMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           G+ILGKDA+N AK  DEKHQL+ +ASAKVA+ DKKIG TEK+SAGT +VG+KVREVDQK+
Sbjct: 121 GYILGKDAVNKAKTLDEKHQLTKSASAKVASFDKKIGLTEKISAGTTVVGDKVREVDQKY 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTK+AFA AE+KVS AG+AIM NRYV +G +WV   FN+VAK AGEVGQK KEK+ 
Sbjct: 181 QVSEKTKTAFAAAEQKVSTAGSAIMKNRYVFTGAAWVTGAFNRVAKKAGEVGQKAKEKVG 240

Query: 241 VSEEDQKKKMTVE--TLHLPESPKAAAPVPPEPQQRP-KPEPAQGLIL 286
           V+EE+QK+KM  E   +HL ESPKA+     E +Q P KP P QGLIL
Sbjct: 241 VAEEEQKRKMVDEFAHVHLSESPKASG----ESEQPPSKPAPVQGLIL 280

[Close]

BLAST of CmoCh16G012270.1 vs. TrEMBL
Match: A0A059C040_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00244 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 4.5e-95
Identity = 201/287 (70.03%), Postives = 234/287 (81.53%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MS+ TVKVSNVSLGA+ERDLKEFFSFSGDIAYVEM    S++ERSQ+AYVTFKD QGAET
Sbjct: 1   MSLTTVKVSNVSLGATERDLKEFFSFSGDIAYVEMH---SDTERSQVAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           AI+LSGATIVD+SV+I   PDY LPP+A A PP     +P   +SA +KAEDVV+SMLAK
Sbjct: 61  AIMLSGATIVDMSVSIAHAPDYKLPPDAIA-PPVTENKSPAGGDSALRKAEDVVTSMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDA+N AK+ DEKHQL+STAS+KVA+ DKKIG TEK+S GT +VG KVREVDQKF
Sbjct: 121 GFILGKDAVNKAKSLDEKHQLTSTASSKVASFDKKIGLTEKISVGTAVVGGKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAF  AE+KVS+AG+AIM NRYV +G SWV   FNKVAKAAGEVGQKTKEK+ 
Sbjct: 181 QVSEKTKSAFVAAEQKVSSAGSAIMKNRYVFTGASWVTGAFNKVAKAAGEVGQKTKEKVG 240

Query: 241 VSEEDQKKKMTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           ++EE+QK+K+  +   +HL ESPKA A   P+P    K EP QGLIL
Sbjct: 241 MAEEEQKRKVVDDFAQIHLSESPKATASAEPKPS---KHEPVQGLIL 280

[Close]

BLAST of CmoCh16G012270.1 vs. TAIR10
Match: AT4G17720.1 (AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 322.4 bits (825), Expect = 2.8e-88
Identity = 181/268 (67.54%), Postives = 217/268 (80.97%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           M++ TVKVSNVSLGA++RDLKEFFSFSGDI Y+E Q   SE+ER+++AYVTFKD QGAET
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQ---SETERTKLAYVTFKDLQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAP-PPAPGTNAPGTAESAYQKAEDVVSSMLA 120
           A+LLSGATIVD SV ++  PDY L PEA A   P     +P   +S  +KAEDVVSSMLA
Sbjct: 61  AVLLSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLA 120

Query: 121 KGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQK 180
           KGFILGKDA+  AK+ DEKHQL+STASAKVA+ DKKIGFT+K++ GTV+VGEKVREVDQK
Sbjct: 121 KGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQK 180

Query: 181 FQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKI 240
           +QVSEKTKSA A AE+ VSNAG+AIM NRYV +G +WV   FNKVAKAA EVGQK KEK+
Sbjct: 181 YQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKV 240

Query: 241 AVSEEDQKKKMTVE--TLHLPESPKAAA 266
            ++EE+ K+K+  E   +HL ESPKAA+
Sbjct: 241 GMAEEEDKRKVVDEFARVHLSESPKAAS 265

[Close]

BLAST of CmoCh16G012270.1 vs. TAIR10
Match: AT5G46870.1 (AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 296.2 bits (757), Expect = 2.2e-80
Identity = 168/272 (61.76%), Postives = 213/272 (78.31%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MS+ TVKVSNVSL A+ERDLKEFFSFSGDIAY+E Q   SE++ S++AYVTFKD QGAET
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQ---SENDGSKLAYVTFKDLQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPA---PGTNAPGTAE--SAYQKAEDVVS 120
           A+LL+G+TIVD SV +T  PDY LPP+A A   +      ++  T E  S ++KAEDVVS
Sbjct: 61  AVLLTGSTIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVS 120

Query: 121 SMLAKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVRE 180
            M++KGF+LGKDA+  AK+ DEKHQL+STASA+V + DK+IGFTEK++ GT +V EKV+E
Sbjct: 121 GMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKE 180

Query: 181 VDQKFQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKT 240
           VDQKFQV+EKTKSA A AE+ VSNAG+AIM NRYV +G +WV   FN+V+KAA EVGQK 
Sbjct: 181 VDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKA 240

Query: 241 KEKIAVSEEDQKKKM----TVETLHLPESPKA 264
           KEK+ ++EE++++K      V  +HL ESPKA
Sbjct: 241 KEKVGLAEEEEEEKKKVVDEVAIVHLTESPKA 269

[Close]

BLAST of CmoCh16G012270.1 vs. TAIR10
Match: AT5G16840.2 (AT5G16840.2 binding partner of acd11 1)

HSP 1 Score: 257.7 bits (657), Expect = 8.5e-69
Identity = 151/258 (58.53%), Postives = 191/258 (74.03%), Query Frame = 1


Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAETAI 62
           V++VKV N+S GA+E D+KEFFSFSG++  +++Q   S +E S  AYVTFK+TQGAETA+
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQ---SSNEHS--AYVTFKETQGAETAV 64

Query: 63  LLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGT-AESAYQKAEDVVSSMLAKG 122
           LLSGA+I D SV I   P+Y       +PP AP      + AES  QKAEDVVSSMLAKG
Sbjct: 65  LLSGASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKG 124

Query: 123 FILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQ 182
           FILGKDA+  AKAFDEKH  +STA+A VA+LD+KIG ++KL+AGT LV EK++ VDQ FQ
Sbjct: 125 FILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQ 184

Query: 183 VSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAV 242
           V+E+TKS +A AE+ VS+AG+A+M NRYV +G SW A  FN+VA+AAGEVGQKTKEK+  
Sbjct: 185 VTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKV-- 244

Query: 243 SEEDQKKKMTVETLHLPE 260
            E +Q  +       LPE
Sbjct: 245 -EAEQPSQPAQSQQQLPE 247

[Close]

BLAST of CmoCh16G012270.1 vs. TAIR10
Match: AT1G67950.3 (AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 232.6 bits (592), Expect = 2.9e-61
Identity = 139/266 (52.26%), Postives = 184/266 (69.17%), Query Frame = 1


Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAETAI 62
           VKTVK+SNVSL  S++D+KEFFSFSGDI YVEM+   SE++ SQ+AYVTFKD+QGAETA+
Sbjct: 28  VKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMR---SETQESQVAYVTFKDSQGAETAM 87

Query: 63  LLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAKGF 122
           LL+GA I DL V+ITP  +Y LPPEA     A  +        + +KAEDVV+ M+ +G+
Sbjct: 88  LLTGAVIADLRVSITPAVNYQLPPEAL----ALDSQEHSFNGFSVKKAEDVVNIMVGRGY 147

Query: 123 ILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQV 182
            LGKDA+  AKAFD++H L S ASA +A+LD K+G +EKLS GT +V EK+R++D+++QV
Sbjct: 148 ALGKDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVVNEKLRDIDERYQV 207

Query: 183 SEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVS 242
            E TKSA A AEE   +A  A+M+N YV SG SW ++ F  V KA        KEK+   
Sbjct: 208 REITKSALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKA-------VKEKVENG 267

Query: 243 EEDQKKKMTVETLHLPESPKAAAPVP 269
            E +K+ +T++    P SPK  A VP
Sbjct: 268 GEGRKEIITLD----PSSPKVPAVVP 275

[Close]

BLAST of CmoCh16G012270.1 vs. TAIR10
Match: AT5G32450.1 (AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-52
Identity = 122/264 (46.21%), Postives = 171/264 (64.77%), Query Frame = 1


Query: 2   SVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAETA 61
           + ++V+V+NVS  A+ER++ EFFSFSGDI ++E+Q+   E  +S+IA+VTF D +  E A
Sbjct: 3   TTRSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQK---EFGQSRIAFVTFTDPKALEIA 62

Query: 62  ILLSGATIVDLSVNITPCPDYV--------------LPPEATAPPPAPGTNAPGTAESAY 121
           +LLSGATIVD  V IT   +YV              +P           TN  G + +  
Sbjct: 63  LLLSGATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYV 122

Query: 122 QKAEDVVSSMLAKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTV 181
            KA+DVV+++LAKG  LG+DA+N AKAFDEKHQL + ASAKV++ DK++G TEKLS G  
Sbjct: 123 SKAQDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGIS 182

Query: 182 LVGEKVREVDQKFQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKA 241
            V EKV+ VDQK QVS+KT +A   AE K+++ G+A+ S+RYV +G +W +  F+KVA+ 
Sbjct: 183 AVNEKVKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARV 242

Query: 242 AGEVGQKTKEKIAVSEEDQKKKMT 252
               G KTKEK  ++  +   K T
Sbjct: 243 GQVAGSKTKEKFNLAVSNMSSKDT 263

[Close]

BLAST of CmoCh16G012270.1 vs. NCBI nr
Match: gi|659095580|ref|XP_008448657.1| (PREDICTED: uncharacterized protein LOC103490760 isoform X1 [Cucumis melo])

HSP 1 Score: 443.4 bits (1139), Expect = 3.1e-121
Identity = 246/288 (85.42%), Postives = 262/288 (90.97%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MS+KTVKVSNVSLGASERD+KEFFSFSGDI Y+EMQ   SE+ERSQ AYVTFKD QGAET
Sbjct: 1   MSIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQ---SETERSQTAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDALNSAKAFDEKHQL+STASAKVATLDKKIGFTEK+SAGT LV +KVREVDQKF
Sbjct: 121 GFILGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFNKVAKAAGEVGQKTKEK+ 
Sbjct: 181 QVSEKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVV 240

Query: 241 VSEEDQKKKMTVE---TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           V+EE+QKKK TVE    +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 VTEEEQKKK-TVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of CmoCh16G012270.1 vs. NCBI nr
Match: gi|659095582|ref|XP_008448658.1| (PREDICTED: uncharacterized protein LOC103490760 isoform X2 [Cucumis melo])

HSP 1 Score: 441.8 bits (1135), Expect = 9.0e-121
Identity = 245/288 (85.07%), Postives = 261/288 (90.62%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           M +KTVKVSNVSLGASERD+KEFFSFSGDI Y+EMQ   SE+ERSQ AYVTFKD QGAET
Sbjct: 1   MQIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQ---SETERSQTAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDALNSAKAFDEKHQL+STASAKVATLDKKIGFTEK+SAGT LV +KVREVDQKF
Sbjct: 121 GFILGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFNKVAKAAGEVGQKTKEK+ 
Sbjct: 181 QVSEKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVV 240

Query: 241 VSEEDQKKKMTVE---TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           V+EE+QKKK TVE    +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 VTEEEQKKK-TVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of CmoCh16G012270.1 vs. NCBI nr
Match: gi|449462041|ref|XP_004148750.1| (PREDICTED: uncharacterized protein LOC101207930 isoform X1 [Cucumis sativus])

HSP 1 Score: 439.1 bits (1128), Expect = 5.8e-120
Identity = 243/288 (84.38%), Postives = 261/288 (90.62%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MS+KTV+VSNVSLGASERD+KEFFSFSGDI Y+EMQ   SE+ERSQ AYVTFKD QGAET
Sbjct: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQ---SETERSQTAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDALNSAKAFDEKHQL+STASAKVAT DKKIGFTEK+SAGT LV +KVREVDQKF
Sbjct: 121 GFILGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFN+VAKAAGEVGQKTKEK+ 
Sbjct: 181 QVSEKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVV 240

Query: 241 VSEEDQKKKMTVE---TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           V+EE+QKKK TVE    +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 VTEEEQKKK-TVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of CmoCh16G012270.1 vs. NCBI nr
Match: gi|778675001|ref|XP_011650336.1| (PREDICTED: uncharacterized protein LOC101207930 isoform X2 [Cucumis sativus])

HSP 1 Score: 437.6 bits (1124), Expect = 1.7e-119
Identity = 242/288 (84.03%), Postives = 260/288 (90.28%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           M +KTV+VSNVSLGASERD+KEFFSFSGDI Y+EMQ   SE+ERSQ AYVTFKD QGAET
Sbjct: 1   MQIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQ---SETERSQTAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDALNSAKAFDEKHQL+STASAKVAT DKKIGFTEK+SAGT LV +KVREVDQKF
Sbjct: 121 GFILGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFN+VAKAAGEVGQKTKEK+ 
Sbjct: 181 QVSEKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVV 240

Query: 241 VSEEDQKKKMTVE---TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           V+EE+QKKK TVE    +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 VTEEEQKKK-TVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of CmoCh16G012270.1 vs. NCBI nr
Match: gi|743809448|ref|XP_011018509.1| (PREDICTED: uncharacterized protein LOC105121532 isoform X1 [Populus euphratica])

HSP 1 Score: 360.9 bits (925), Expect = 2.0e-96
Identity = 207/287 (72.13%), Postives = 236/287 (82.23%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MSVKTVKVSNVSLGASERDLKEFFSFSGDI YVEM+   S++ERSQIAYVTFKD+QGA+T
Sbjct: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIEYVEMK---SDNERSQIAYVTFKDSQGADT 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSV +   PDY LPP A A   A G  APG  ESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVTVALDPDYELPPAALAELSATGNKAPGD-ESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKF 180
           GFILGKDA+N AK FDEKHQL+STASAKV + DKKIG TEK+SAGT +VG+KVREVDQKF
Sbjct: 121 GFILGKDAINKAKGFDEKHQLTSTASAKVVSFDKKIGLTEKISAGTTVVGDKVREVDQKF 180

Query: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           QVSEKTKSAFA AE+KVS AG+AIMSNRYV +G +WV   FNKVAKAAG+VGQK KEK+ 
Sbjct: 181 QVSEKTKSAFAAAEQKVSTAGSAIMSNRYVFTGAAWVTGAFNKVAKAAGDVGQKAKEKVG 240

Query: 241 VSEEDQKKKMTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 286
           ++EE+QK+KM  +   +HL ESPKA+     +P    KP PAQGLIL
Sbjct: 241 MAEEEQKRKMVDDFAQVHLSESPKASDASDQKPS---KPPPAQGLIL 280

The following BLAST results are available for this feature:

BLAST of CmoCh16G012270.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BPA1_ARATH	5.7e-67	58.14	Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1	[more]

BLAST of CmoCh16G012270.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L545_CUCSA	4.1e-120	84.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008890 PE=4 SV=1	[more]
A9PE83_POPTR	1.4e-96	72.47	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
B9GLU8_POPTR	1.8e-96	72.47	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s02090g PE=4 SV=1	[more]
A0A067JY86_JATCU	2.0e-95	71.18	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19366 PE=4 SV=1	[more]
A0A059C040_EUCGR	4.5e-95	70.03	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00244 PE=4 SV=1	[more]

BLAST of CmoCh16G012270.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17720.1	2.8e-88	67.54	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	2.2e-80	61.76	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	8.5e-69	58.53	binding partner of acd11 1	[more]
AT1G67950.3	2.9e-61	52.26	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G32450.1	1.5e-52	46.21	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmoCh16G012270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095580\|ref\|XP_008448657.1\|	3.1e-121	85.42	PREDICTED: uncharacterized protein LOC103490760 isoform X1 [Cucumis melo]	[more]
gi\|659095582\|ref\|XP_008448658.1\|	9.0e-121	85.07	PREDICTED: uncharacterized protein LOC103490760 isoform X2 [Cucumis melo]	[more]
gi\|449462041\|ref\|XP_004148750.1\|	5.8e-120	84.38	PREDICTED: uncharacterized protein LOC101207930 isoform X1 [Cucumis sativus]	[more]
gi\|778675001\|ref\|XP_011650336.1\|	1.7e-119	84.03	PREDICTED: uncharacterized protein LOC101207930 isoform X2 [Cucumis sativus]	[more]
gi\|743809448\|ref\|XP_011018509.1\|	2.0e-96	72.13	PREDICTED: uncharacterized protein LOC105121532 isoform X1 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh16G012270	CmoCh16G012270	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh16G012270.1	CmoCh16G012270.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G012270.1.exon.5	CmoCh16G012270.1.exon.5	exon
CmoCh16G012270.1.exon.4	CmoCh16G012270.1.exon.4	exon
CmoCh16G012270.1.exon.3	CmoCh16G012270.1.exon.3	exon
CmoCh16G012270.1.exon.2	CmoCh16G012270.1.exon.2	exon
CmoCh16G012270.1.exon.1	CmoCh16G012270.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G012270.1.five_prime_UTR.1	CmoCh16G012270.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G012270.1.CDS.1	CmoCh16G012270.1.CDS.1	CDS
CmoCh16G012270.1.CDS.2	CmoCh16G012270.1.CDS.2	CDS
CmoCh16G012270.1.CDS.3	CmoCh16G012270.1.CDS.3	CDS
CmoCh16G012270.1.CDS.4	CmoCh16G012270.1.CDS.4	CDS
CmoCh16G012270.1.CDS.5	CmoCh16G012270.1.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G012270.1.three_prime_UTR.1	CmoCh16G012270.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 7..69 score: 4.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 5..77 score: 5.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 4..81 score: 10
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 4..74 score: 6.
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 3..79 score: 4.34