Carg23599 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23599
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	binding partner of ACD11 1-like
Location	Cucurbita_argyrosperma_scaffold_235 : 257020 .. 259718 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCGTAGCTATTTTTCTTTCATCAGAGGGGACGAAGACTTGGACACACTGAGAGGCAATCCTAAATTCAGAATCAAGCTTTTCGTTCTAATTTCGTGTAGATTTCAGTTTTCCGGCGATCGTCGGTTGATTCGATATCTGTTCCGGCGATTTATGTTCGTCATTTCTAGCAATGTCGGTTAGTACTTCGTGAATTTCCCTCTTTTTCATCGCGTTTGAAGATTCTGATTGCGAAGTGGAAAATCGTTGGGGAAGGATTCCATTGGGTTAGATTTGGACCCTTACTCTGTAGTTTTTCTTTGGAGTTATTACAAATTAGTGCAATGTGCGGCCAAGGGATTAGATCTCTTGTGGTTTATTTTCCCGTTTGATTTTCCCATTTGAGGGTTTTGTATCATGTCGAGATTTTCCCATTCAGTGTATCAAGAATTAGGATTTATGTTTAAGCAAATTGGTCCATTTCTATGTTTTGATCGATGAAATGTATTTTGAATCCGTTCCACGTTCGTTCCTCCTACTGAACCTGAACTTGCATAGAAGCATACATTCGAAATTAAAACCAGGAACGTCATGCCTGTAATTAATACTTCGAAGTGTGTAATCTTCGCTCCCTTTGGATTACTATTGCTGCTTGGCTTGTTGATGTCCATCGTTTTCTTGGCTCCACCCATGAGATTTTCCTTTTTGCTTTTCATTTCTTTTCTGGCCATAGCTGATTTTTTTTACTCTCTTTCTGACTTATGTTGATCACTGTTCAGCTGTAGCAATGAATTTATGCACCTTCTTGGAGATAGTGGGAGACTTCTTGATCTTTGTCTGAACTGCTTTGTTCTGTATGTGCAGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGGTTGTGCAGGTTTTCATTTCAGTTTATGATATATATTCTTTTCGTTCAATGTTTTTATTCGTTTGCAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGTAAGTTCACTTTGTAGACAAAGTCTCTAGGTCGCGGTAATTATAAGTTTCATACCTATTGGCATTTGAGATATAACTCTCAAAGATTCCATTATTAGTGGAGCTGTGAGTCAAAGTTGAAATATTGTTGGCAATATGGTTGTTCAAGCTTAAAATGGTGTTCATGGCTGTTATTAGTGGTCACGTCACATAGCCTTCATCTAGGGAGAGGATGTTGCTTTAACAACCTCACCTGGGAGATCCCACATCGGTTGGGGAGCAGAACGAACATTTTTTATAAGGGTATGGAAACCTCTCCTAGCATATGCGTTTTAAAAACCTTGAGGAGAAGTCCGAAAGGAAAAGCCCAAAAAAGACGATATCTGCTAGCGGTGGACTTGGGCCGTTACATCACCACTAGAAGAGATCAGCGAGCACCTTAGCATTTCTTCTTCTGTTCTCTTTTACTTGTACCTTACATCATTTCCACCTCCATCCTCGGTGCGAGCCCCAATATATGTATTAGGTGGATCTTGTTGCCATTTTACAATCACATGATGTATGATATGAGTGAGCATTTTGCCACTTAACGAGTTAAATGGTCTAAGGGACACGACCTTCGGTGCAAACATCAGGAGGTCAAATTTTGGCTTGATTGCTCTTCTATTATGTGAGAGTATAAGATAGACCTTAGCTGGAAGTTTGTTCTGCATCAATAAAATTGCCCCATTTCTCTTTCCTTGAGATTCATATTGTTTGATTTTTTTTTTCTTACATTCATCACTCGTTATACTTAACGTATTAACTAATGAGAAACAGCAATACGAATCGCCCGAGCTAGTTAATTAATGGAGCTCAACTTCTTGTCAGGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCTCCTGAAGCTACCGCACCACCCCCTGTAAGATTCTTGGGACTGTTTGTTTTTTGGGCTGCTATGTGTGTCACTTTATATGATTTCTCTTAGTTTACCTGCTTATTGTCTTGATTATTGCAGGCCCCTGGAACTAATGCACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGACGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGTGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCTGAAGAAGATCAGAAAAAGAAGACGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAACCCGAACCCGCTCAAGGTCTGATCCTCTAA

mRNA sequence

TGTCGTAGCTATTTTTCTTTCATCAGAGGGGACGAAGACTTGGACACACTGAGAGGCAATCCTAAATTCAGAATCAAGCTTTTCGTTCTAATTTCGTGTAGATTTCAGTTTTCCGGCGATCGTCGGTTGATTCGATATCTGTTCCGGCGATTTATGTTCGTCATTTCTAGCAATGTCGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGGTTGTGCAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCTCCTGAAGCTACCGCACCACCCCCTGCCCCTGGAACTAATGCACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGACGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGTGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCTGAAGAAGATCAGAAAAAGAAGACGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAACCCGAACCCGCTCAAGGTCTGATCCTCTAA

Coding sequence (CDS)

ATGTCGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGGTTGTGCAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCTCCTGAAGCTACCGCACCACCCCCTGCCCCTGGAACTAATGCACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGACGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGTGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCTGAAGAAGATCAGAAAAAGAAGACGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAACCCGAACCCGCTCAAGGTCTGATCCTCTAA

Protein sequence

MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAETAILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEEDQKKKTTVETLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL

Homology

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BLAST of Carg23599 vs. NCBI nr
Match: XP_022923202.1 (binding partner of ACD11 1-like [Cucurbita moschata])

HSP 1 Score: 427.9 bits (1099), Expect = 2.6e-116
Identity = 281/285 (98.60%), Postives = 281/285 (98.60%), Query Frame = 0


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQ   SESERSQIAYVTFKDTQGAET
Sbjct: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQ---SESERSQIAYVTFKDTQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK
Sbjct: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXX 180
           GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXX
Sbjct: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           XXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA
Sbjct: 181 XXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240

Query: 241 VSEEDQKKKTTVETLHLPESPKAAXXXXXXXXXXXXXXXAQGLIL 286
           VSEEDQKKK TVETLHLPESPKAAXXXXXXXXXXXXXXXAQGLIL
Sbjct: 241 VSEEDQKKKMTVETLHLPESPKAAXXXXXXXXXXXXXXXAQGLIL 282

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BLAST of Carg23599 vs. NCBI nr
Match: XP_023552502.1 (binding partner of ACD11 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 425.2 bits (1092), Expect = 1.7e-115
Identity = 279/285 (97.89%), Postives = 280/285 (98.25%), Query Frame = 0


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQ   SESERSQIAYVTFKDTQGAET
Sbjct: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQ---SESERSQIAYVTFKDTQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTN PGTAESAYQKAEDVVSSMLAK
Sbjct: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXX 180
           GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXX
Sbjct: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           XXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA
Sbjct: 181 XXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240

Query: 241 VSEEDQKKKTTVETLHLPESPKAAXXXXXXXXXXXXXXXAQGLIL 286
           VSEED+KKKTTVETLHLPESPKA XXXXXXXXXXXXXXXAQGLIL
Sbjct: 241 VSEEDEKKKTTVETLHLPESPKAXXXXXXXXXXXXXXXXAQGLIL 282

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BLAST of Carg23599 vs. NCBI nr
Match: XP_022965319.1 (binding partner of ACD11 1-like [Cucurbita maxima])

HSP 1 Score: 413.7 bits (1062), Expect = 5.1e-112
Identity = 239/285 (83.86%), Postives = 241/285 (84.56%), Query Frame = 0


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQ   SESERSQIAYVTFKD QGAET
Sbjct: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQ---SESERSQIAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A LLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK
Sbjct: 61  ATLLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXX 180
           GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEK+SAGTVLVG+K        
Sbjct: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKISAGTVLVGDKVREVDQKF 180

Query: 181 XXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
                            SNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA
Sbjct: 181 QVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240

Query: 241 VSEEDQKKKTTVETLHLPESPKAAXXXXXXXXXXXXXXXAQGLIL 286
           VSEEDQKKK TVETLHLPESPKAA      XX       AQGLIL
Sbjct: 241 VSEEDQKKK-TVETLHLPESPKAA-PVPPEXXQRPKPEPAQGLIL 280

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BLAST of Carg23599 vs. NCBI nr
Match: XP_008448657.1 (PREDICTED: binding partner of ACD11 1 isoform X1 [Cucumis melo])

HSP 1 Score: 337.0 bits (863), Expect = 6.1e-89
Identity = 220/287 (76.66%), Postives = 233/287 (81.18%), Query Frame = 0


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MS+KTVKVSNVSLGASERD+KEFFSFSGDI Y+EMQ   SE+ERSQ AYVTFKD QGAET
Sbjct: 1   MSIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQ---SETERSQTAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXX 180
           GFILGKDALNSAKAFDEKHQL+STASAKVATLDKKIGFTEK+SAG       XXXXXXXX
Sbjct: 121 GFILGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           XXXXXXXXXXXXXXXXX  AG+AIM NRYV SGTSWVADTFNKVAKAAGEVGQKTKEK+ 
Sbjct: 181 XXXXXXXXXXXXXXXXXXXAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVX 240

Query: 241 VSEEDQKKKTTVE--TLHLPESPKAAXXXXXXXXXXXXXXXAQGLIL 286
                    T  +   +HL ESPKAA               AQGLIL
Sbjct: 241 XXXXXXXXXTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

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BLAST of Carg23599 vs. NCBI nr
Match: XP_008448658.1 (PREDICTED: binding partner of ACD11 1 isoform X2 [Cucumis melo])

HSP 1 Score: 335.5 bits (859), Expect = 1.8e-88
Identity = 219/287 (76.31%), Postives = 232/287 (80.84%), Query Frame = 0


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           M +KTVKVSNVSLGASERD+KEFFSFSGDI Y+EMQ   SE+ERSQ AYVTFKD QGAET
Sbjct: 1   MQIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQ---SETERSQTAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXX 180
           GFILGKDALNSAKAFDEKHQL+STASAKVATLDKKIGFTEK+SAG       XXXXXXXX
Sbjct: 121 GFILGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           XXXXXXXXXXXXXXXXX  AG+AIM NRYV SGTSWVADTFNKVAKAAGEVGQKTKEK+ 
Sbjct: 181 XXXXXXXXXXXXXXXXXXXAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVX 240

Query: 241 VSEEDQKKKTTVE--TLHLPESPKAAXXXXXXXXXXXXXXXAQGLIL 286
                    T  +   +HL ESPKAA               AQGLIL
Sbjct: 241 XXXXXXXXXTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

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BLAST of Carg23599 vs. TAIR10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 279.3 bits (713), Expect = 2.7e-75
Identity = 161/267 (60.30%), Postives = 193/267 (72.28%), Query Frame = 0


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           M++ TVKVSNVSLGA++RDLKEFFSFSGDI Y+E Q   SE+ER+++AYVTFKD QGAET
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQ---SETERTKLAYVTFKDLQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAP-PPAPGTNAPGTAESAYQKAEDVVSSMLA 120
           A+LLSGATIVD SV ++  PDY L PEA A   P     +P   +S  +KAEDVVSSMLA
Sbjct: 61  AVLLSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLA 120

Query: 121 KGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXX 180
           KGFILGKDA+  AK+ DEKHQL+STASAKVA+ DKKIGFT+K++ GTV+VGEK       
Sbjct: 121 KGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQK 180

Query: 181 XXXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKI 240
                             SNAG+AIM NRYV +G +WV   FNKVAKAA EVGQK KEK+
Sbjct: 181 YQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKV 240

Query: 241 AVSEEDQKKKTTVE--TLHLPESPKAA 265
            ++EE+ K+K   E   +HL ESPKAA
Sbjct: 241 GMAEEEDKRKVVDEFARVHLSESPKAA 264

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BLAST of Carg23599 vs. TAIR10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 244.6 bits (623), Expect = 7.5e-65
Identity = 145/272 (53.31%), Postives = 185/272 (68.01%), Query Frame = 0


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MS+ TVKVSNVSL A+ERDLKEFFSFSGDIAY+E Q   SE++ S++AYVTFKD QGAET
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQ---SENDGSKLAYVTFKDLQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAP----PPAPGTNAPGTAE-SAYQKAEDVVS 120
           A+LL+G+TIVD SV +T  PDY LPP+A A       +  +++P   + S ++KAEDVVS
Sbjct: 61  AVLLTGSTIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVS 120

Query: 121 SMLAKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXX 180
            M++KGF+LGKDA+  AK+ DEKHQL+STASA+V + DK+IGFTEK++ GT +V EK   
Sbjct: 121 GMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKE 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKT 240
                                 SNAG+AIM NRYV +G +WV   FN+V+KAA EVGQK 
Sbjct: 181 VDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKA 240

Query: 241 KEKIAVS----EEDQKKKTTVETLHLPESPKA 264
           KEK+ ++             V  +HL ESPKA
Sbjct: 241 KEKVGLAXXXXXXXXXXXXEVAIVHLTESPKA 269

[Close]

BLAST of Carg23599 vs. TAIR10
Match: AT1G67950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 196.8 bits (499), Expect = 1.8e-50
Identity = 123/260 (47.31%), Postives = 161/260 (61.92%), Query Frame = 0


Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAETAI 62
           VKTVK+SNVSL  S++D+KEFFSFSGDI YVEM+   SE++ SQ+AYVTFKD+QGAETA+
Sbjct: 28  VKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMR---SETQESQVAYVTFKDSQGAETAM 87

Query: 63  LLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAKGF 122
           LL+GA I DL V+ITP  +Y LPPEA     A  +        + +KAEDVV+ M+ +G+
Sbjct: 88  LLTGAVIADLRVSITPAVNYQLPPEAL----ALDSQEHSFNGFSVKKAEDVVNIMVGRGY 147

Query: 123 ILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXXXX 182
            LGKDA+  AKAFD++H L S ASA +A+LD K+G +EKLS GT +V EK          
Sbjct: 148 ALGKDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVVNEKLRDIDERYQV 207

Query: 183 XXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVS 242
                           +A  A+M+N YV SG SW ++ F  V KA        KEK+   
Sbjct: 208 REITKSALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKA-------VKEKVENG 267

Query: 243 EEDQKKKTTVETLHLPESPK 263
            E +K+  T++    P SPK
Sbjct: 268 GEGRKEIITLD----PSSPK 269

[Close]

BLAST of Carg23599 vs. TAIR10
Match: AT5G16840.2 (binding partner of acd11 1)

HSP 1 Score: 183.0 bits (463), Expect = 2.7e-46
Identity = 123/258 (47.67%), Postives = 152/258 (58.91%), Query Frame = 0


Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAETAI 62
           V++VKV N+S GA+E D+KEFFSFSG++  +++Q   S +E S  AYVTFK+TQGAETA+
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQ---SSNEHS--AYVTFKETQGAETAV 64

Query: 63  LLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGT-AESAYQKAEDVVSSMLAKG 122
           LLSGA+I D SV I   P+Y       +PP AP      + AES  QKAEDVVSSMLAKG
Sbjct: 65  LLSGASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKG 124

Query: 123 FILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXXX 182
           FILGKDA+  AKAFDEKH  +STA+A                         XX       
Sbjct: 125 FILGKDAVGKAKAFDEKHGFTSTATAGXXXXXXXXXXXXXXXXXXXXXXXXXXAVDQNFQ 184

Query: 183 XXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAV 242
                           S+AG+A+M NRYV +G SW A  FN+VA+AAGEVGQKTKEK+  
Sbjct: 185 VTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKV-- 244

Query: 243 SEEDQKKKTTVETLHLPE 260
            E +Q  +       LPE
Sbjct: 245 -EAEQPSQPAQSQQQLPE 247

[Close]

BLAST of Carg23599 vs. TAIR10
Match: AT5G32450.1 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-41
Identity = 128/264 (48.48%), Postives = 173/264 (65.53%), Query Frame = 0


Query: 2   SVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAETA 61
           + ++V+V+NVS  A+ER++ EFFSFSGDI ++E+Q+   E  +S+IA+VTF D +  E A
Sbjct: 3   TTRSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQK---EFGQSRIAFVTFTDPKALEIA 62

Query: 62  ILLSGATIVDLSVNITPCPDYV--------------LPPEATAPPPAPGTNAPGTAESAY 121
           +LLSGATIVD  V IT   +YV              +P           TN  G + +  
Sbjct: 63  LLLSGATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYV 122

Query: 122 QKAEDVVSSMLAKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTV 181
            KA+DVV+++LAKG  LG+DA+N AKAFDEKHQL + ASAKV++ DK++G TEKLS G  
Sbjct: 123 SKAQDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGIS 182

Query: 182 LVGEKXXXXXXXXXXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKA 241
            V   XXXXXXXXXXXXXXXXXXXXXX   ++ G+A+ S+RYV +G +W +  F+KVA+ 
Sbjct: 183 AVXXXXXXXXXXXXXXXXXXXXXXXXXRKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARV 242

Query: 242 AGEVGQKTKEKIAVSEEDQKKKTT 252
               G KTKEK  ++  +   K T
Sbjct: 243 GQVAGSKTKEKFNLAVSNMSSKDT 263

[Close]

BLAST of Carg23599 vs. Swiss-Prot
Match: sp|Q9LFD5|BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.8e-44
Identity = 122/258 (47.29%), Postives = 151/258 (58.53%), Query Frame = 0


Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAETAI 62
           V++VKV N+S GA+E D+KEFFSFSG++  +++Q     +E S  AYVTFK+TQGAETA+
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQ----SNEHS--AYVTFKETQGAETAV 64

Query: 63  LLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGT-AESAYQKAEDVVSSMLAKG 122
           LLSGA+I D SV I   P+Y       +PP AP      + AES  QKAEDVVSSMLAKG
Sbjct: 65  LLSGASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKG 124

Query: 123 FILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXXX 182
           FILGKDA+  AKAFDEKH  +STA+A                         XX       
Sbjct: 125 FILGKDAVGKAKAFDEKHGFTSTATAGXXXXXXXXXXXXXXXXXXXXXXXXXXAVDQNFQ 184

Query: 183 XXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAV 242
                           S+AG+A+M NRYV +G SW A  FN+VA+AAGEVGQKTKEK+  
Sbjct: 185 VTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKV-- 244

Query: 243 SEEDQKKKTTVETLHLPE 260
            E +Q  +       LPE
Sbjct: 245 -EAEQPSQPAQSQQQLPE 246

[Close]

BLAST of Carg23599 vs. TrEMBL
Match: tr|A0A1S3BK81|A0A1S3BK81_CUCME (binding partner of ACD11 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490760 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.0e-89
Identity = 220/287 (76.66%), Postives = 233/287 (81.18%), Query Frame = 0


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MS+KTVKVSNVSLGASERD+KEFFSFSGDI Y+EMQ   SE+ERSQ AYVTFKD QGAET
Sbjct: 1   MSIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQ---SETERSQTAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXX 180
           GFILGKDALNSAKAFDEKHQL+STASAKVATLDKKIGFTEK+SAG       XXXXXXXX
Sbjct: 121 GFILGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           XXXXXXXXXXXXXXXXX  AG+AIM NRYV SGTSWVADTFNKVAKAAGEVGQKTKEK+ 
Sbjct: 181 XXXXXXXXXXXXXXXXXXXAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVX 240

Query: 241 VSEEDQKKKTTVE--TLHLPESPKAAXXXXXXXXXXXXXXXAQGLIL 286
                    T  +   +HL ESPKAA               AQGLIL
Sbjct: 241 XXXXXXXXXTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of Carg23599 vs. TrEMBL
Match: tr|A0A1S3BK74|A0A1S3BK74_CUCME (binding partner of ACD11 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490760 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.2e-88
Identity = 219/287 (76.31%), Postives = 232/287 (80.84%), Query Frame = 0


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           M +KTVKVSNVSLGASERD+KEFFSFSGDI Y+EMQ   SE+ERSQ AYVTFKD QGAET
Sbjct: 1   MQIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQ---SETERSQTAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXX 180
           GFILGKDALNSAKAFDEKHQL+STASAKVATLDKKIGFTEK+SAG       XXXXXXXX
Sbjct: 121 GFILGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           XXXXXXXXXXXXXXXXX  AG+AIM NRYV SGTSWVADTFNKVAKAAGEVGQKTKEK+ 
Sbjct: 181 XXXXXXXXXXXXXXXXXXXAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVX 240

Query: 241 VSEEDQKKKTTVE--TLHLPESPKAAXXXXXXXXXXXXXXXAQGLIL 286
                    T  +   +HL ESPKAA               AQGLIL
Sbjct: 241 XXXXXXXXXTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of Carg23599 vs. TrEMBL
Match: tr|A0A0A0L545|A0A0A0L545_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008890 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 7.6e-88
Identity = 217/287 (75.61%), Postives = 232/287 (80.84%), Query Frame = 0


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MS+KTV+VSNVSLGASERD+KEFFSFSGDI Y+EMQ   SE+ERSQ AYVTFKD QGAET
Sbjct: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQ---SETERSQTAYVTFKDAQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXX 180
           GFILGKDALNSAKAFDEKHQL+STASAKVAT DKKIGFTEK+SAG       XXXXXXXX
Sbjct: 121 GFILGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
           XXXXXXXXXXXXXXXXX  AG+AIM NRYV SGTSWVADTFN+VAKAAGEVGQKTKEK+ 
Sbjct: 181 XXXXXXXXXXXXXXXXXXXAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVX 240

Query: 241 VSEEDQKKKTTVE--TLHLPESPKAAXXXXXXXXXXXXXXXAQGLIL 286
                    T  +   +HL ESPKAA               AQGLIL
Sbjct: 241 XXXXXXXXXTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of Carg23599 vs. TrEMBL
Match: tr|A0A2C9U3Q4|A0A2C9U3Q4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G010500 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 4.5e-80
Identity = 169/265 (63.77%), Postives = 201/265 (75.85%), Query Frame = 0


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MSV+TVKVSNVS+GA+ERDLKEFFSFSGDI YVE+ R CS++E+SQ+AYVTFKD+QGAET
Sbjct: 1   MSVRTVKVSNVSIGATERDLKEFFSFSGDIEYVEVHR-CSDNEQSQVAYVTFKDSQGAET 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDL+V ITP PDY LPP A APPP   T  PG AESA++KAEDVV+SMLAK
Sbjct: 61  AVLLSGATIVDLAVTITPDPDYELPPAALAPPP---TETPGGAESAFRKAEDVVTSMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXX 180
           G+ILGKDA+N AK  DEKHQL+STAS KVA+LDKKIG TEK+S GT +VG+K        
Sbjct: 121 GYILGKDAVNKAKTLDEKHQLTSTASFKVASLDKKIGLTEKISVGTTIVGDKVREVDQKF 180

Query: 181 XXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
                            S AG+AIM NRY+ +  +WV   FNKVAKAAG+VG K KEK+ 
Sbjct: 181 QVSEKTKSAFAVAEQKVSTAGSAIMKNRYIFTSAAWVTGAFNKVAKAAGDVGSKAKEKVE 240

Query: 241 VSEEDQKKKTTVE--TLHLPESPKA 264
           ++EE+QK+K   E   +HL ESPKA
Sbjct: 241 IAEEEQKRKVVDEFAQVHLSESPKA 261

[Close]

BLAST of Carg23599 vs. TrEMBL
Match: tr|A9PE83|A9PE83_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.5e-78
Identity = 179/287 (62.37%), Postives = 205/287 (71.43%), Query Frame = 0


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQRLCSESERSQIAYVTFKDTQGAET 60
           MSVKTVKVSNVSLGASERDLKEFFSFSGDI YVEM+   S++ERSQIAYVTFKD+QGA+T
Sbjct: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIEYVEMK---SDNERSQIAYVTFKDSQGADT 60

Query: 61  AILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAK 120
           A+LLSGATIVDLSV +   PDY LPP A A   A G  APG  ESA +KAEDVVS MLAK
Sbjct: 61  AVLLSGATIVDLSVTVALDPDYQLPPAALAELSATGNKAPGD-ESALRKAEDVVSGMLAK 120

Query: 121 GFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKXXXXXXXX 180
           GFILGKDA+N AK FDEKHQL+STASAKV + DKKIG TEK+SAGT +VG+K        
Sbjct: 121 GFILGKDAINKAKGFDEKHQLTSTASAKVVSFDKKIGLTEKISAGTTVVGDKVREVDQKF 180

Query: 181 XXXXXXXXXXXXXXXXXSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIA 240
                            S+AG+AIMSNRYV +G +WV   FNKVAKAAG+VGQK KEK  
Sbjct: 181 QVSEKTKSAFAVAEQKVSSAGSAIMSNRYVFTGAAWVTGAFNKVAKAAGDVGQKAKEKAG 240

Query: 241 VSEEDQKKKTTVE--TLHLPESPKAAXXXXXXXXXXXXXXXAQGLIL 286
           ++EE+QK+K   +   +HL ESPKA+               AQGLIL
Sbjct: 241 MAEEEQKRKMVDDFAQVHLSESPKAS---SASDQKPSKPPPAQGLIL 280

The following BLAST results are available for this feature:

BLAST of Carg23599 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923202.1	2.6e-116	98.60	binding partner of ACD11 1-like [Cucurbita moschata]	[more]
XP_023552502.1	1.7e-115	97.89	binding partner of ACD11 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022965319.1	5.1e-112	83.86	binding partner of ACD11 1-like [Cucurbita maxima]	[more]
XP_008448657.1	6.1e-89	76.66	PREDICTED: binding partner of ACD11 1 isoform X1 [Cucumis melo]	[more]
XP_008448658.1	1.8e-88	76.31	PREDICTED: binding partner of ACD11 1 isoform X2 [Cucumis melo]	[more]

BLAST of Carg23599 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17720.1	2.7e-75	60.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	7.5e-65	53.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G67950.3	1.8e-50	47.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	2.7e-46	47.67	binding partner of acd11 1	[more]
AT5G32450.1	1.5e-41	48.48	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg23599 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LFD5\|BPA1_ARATH	1.8e-44	47.29	Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1	[more]

BLAST of Carg23599 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BK81\|A0A1S3BK81_CUCME	4.0e-89	76.66	binding partner of ACD11 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490760 PE...	[more]
tr\|A0A1S3BK74\|A0A1S3BK74_CUCME	1.2e-88	76.31	binding partner of ACD11 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490760 PE...	[more]
tr\|A0A0A0L545\|A0A0A0L545_CUCSA	7.6e-88	75.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008890 PE=4 SV=1	[more]
tr\|A0A2C9U3Q4\|A0A2C9U3Q4_MANES	4.5e-80	63.77	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G010500 PE=4 SV=...	[more]
tr\|A9PE83\|A9PE83_POPTR	5.5e-78	62.37	Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23599-RA	Carg23599-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 5..77 e-value: 5.5E-5 score: 32.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 7..69 e-value: 5.6E-7 score: 29.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 4..81 score: 10.889
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 4..77 e-value: 7.8E-9 score: 37.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..285
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..276
None	No IPR available	PANTHER	PTHR44136:SF5	RRM-CONTAINING PROTEIN-RELATED	coord: 1..285
None	No IPR available	PANTHER	PTHR44136	FAMILY NOT NAMED	coord: 1..285
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 3..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23599	Cla008827	Watermelon (97103) v1	carwmB1049
Carg23599	Csa3G008890	Cucumber (Chinese Long) v2	carcuB1064
Carg23599	MELO3C013833	Melon (DHL92) v3.5.1	carmeB1017
Carg23599	ClCG10G001390	Watermelon (Charleston Gray)	carwcgB1021
Carg23599	CSPI03G01420	Wild cucumber (PI 183967)	carcpiB1085
Carg23599	Cucsa.322000	Cucumber (Gy14) v1	carcgyB1164
Carg23599	CmaCh06G006370	Cucurbita maxima (Rimu)	carcmaB1454
Carg23599	CmaCh16G011770	Cucurbita maxima (Rimu)	carcmaB1453
Carg23599	CmoCh06G006420	Cucurbita moschata (Rifu)	carcmoB1409
Carg23599	CmoCh16G012270	Cucurbita moschata (Rifu)	carcmoB1407
Carg23599	Cp4.1LG14g09780	Cucurbita pepo (Zucchini)	carcpeB1461
Carg23599	Cp4.1LG08g08680	Cucurbita pepo (Zucchini)	carcpeB1463
Carg23599	CsGy3G001330	Cucumber (Gy14) v2	carcgybB1033
Carg23599	MELO3C013833.2	Melon (DHL92) v3.6.1	carmedB1029
Carg23599	CsaV3_3G001470	Cucumber (Chinese Long) v3	carcucB1097
Carg23599	Cla97C10G186000	Watermelon (97103) v2	carwmbB1107
Carg23599	Bhi11G000007	Wax gourd	carwgoB1230

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23599	Carg23395	Silver-seed gourd	carcarB651

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23599	Bottle gourd (USVL1VR-Ls)	carlsiB958