Cp4.1LG14g09780.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG14g09780.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	Cp4.1LG14 : 8255995 .. 8258980 (+)
Sequence length	1317

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTTCGTGTCAATAGCTATTTTTCTTTCATCAGAGGCGACGAGGACTTGGACACACTGAGGGGAAATCCTTAATTCAGAATCAAGCTTTTCGTTCTAATTTCGTGTAGATTTCAGTTTTCCGGCGATCGTCGGTTGATTCGATATCTGTTCCGGCGATTTATGTTCGTCATTTCTAGCAATGTCGGTTAGTACTTCGTGAATTTCCCTCTCTTTTCATCGCGTTTGAAGATTCTGATTGCGAAGTGGAAAATCGTTGGGGAAGGATTGCATTGGGTTAGATTTGGACCCTTACGCTGTAGTTTTTCTTTGGAGTTATTACAAATTAGTGCAATGTGCGGCCAAGGGATTAGATCTCTTGTGGTTTATTTTCCCGTTTGATTTTCCCATTTGAGGGTTTTGTATCATGTCGAGATTTTCCCATTCAGTTTATCAAGAATTAGGATTTATGTTTAAGCAAATTGGTCCATTTCTATGTTTTGATCGATGAAATGTATTTTGAATCCGTTCCACGTTCGTTCCTCCTACTGAACCTGAACCTGCATAGAAGCATACATTCGAAATTAAAACCAGGAACGTCATGCCTGTAATTAATACTTCGAAGTGTGTAATTATTATTGCTGCTTGGCTTGTTGATGTCCATCGTTTTCTTGGCTGCATCCATGAGATTTTCTTTTTAGCTTTTCATTTCTTTTCTGGCCATAGCTGATTTTTTTTTTTTTTTTTACGCTCTTTCTGACTTATGTTGATCACTGTTCAGCTGTAGCAATGAATTTATGCACCTTCTTGGAGATAGTGGGAGATTTCTTGATCTTTGTCTGAACTGCTTTGTTCTGTATGTGCAGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGGTTGTGCAGGTTTTCATTTCAGTTTATGATATATATTCTTTTCGTTCAATGTTTTTATTCTTTTGCAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGTAAGTTCACTTTGTAGACAAAGTCTCTAGGTCGCGGTAATTATAAGTTTCATACCTATTGGCATTTAAGATATAACTCTCAAAGATTCCATTATTAGTGGAGCTGTGAGTCAAAGTTGAAATATTGTTGGCAATATGGTTGTTCAAGCTTAAAATGGTGTTCATGGCTGTTATTAGTGGTCACGTCACATAGCCTTCATCTAGGGAGAGGATGTTGCTTTAACAACCTCACCTGGGAGATCCCACATCGGTTGGAGAGGAGAACGAACATTTTTTATAAGGGTATGGAAACCTCTCCTAGCATATGCGTTTTAAAAACCTTGAGGAGAAGTCCGAAAGGAAAAGCCCAAAGAGGACGATATCTGCTAGCGGTGGGCTTGGGCCGTTACATCACCACTAGAAGAGATCAGCGAGCACCTTAACATTTCTTCTTCTGTTCTCTTTTACTTGTACCTTACATCATTTCCACCTCCATCCTCGGTGCGAGCCCCAATATATGTATTAGGTGGATCTTGTTGCCATTTTACAATCACATGATGTATGATATGAGTGAGCATTTTGCCACTTAACGAGTTAAATGGTCTAAGGGACACGACCTTCGGTGCAAACATCAGGAGGTCAAATTTTGGCTTGATTGCTCTTCTATTATGTGAGAGTATAAGATAGACCTTAGCTGGAAGTTTGTTCTGCATCAATAAAATTGCCCCATTTTTCCTTGAGATGCATATTGTTTGAGTTTTTTTTCTTACATTCATCACTCGTTATACTTAACGTATTAACTAATGAGAAACAGCAATACGAATCGCCCGAGCTAGTTAATTAATGGAGCTCAACTTCTTGTCAGGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCTCCTGAAGCTACCGCACCACCCCCTGTAAGATTCTTGGGACTGTTTGTTTTTTGGGCTGCTATGTGTGTCACTTTATATGATTTCTCTTAGTAGTTTACCAGCTTATTGTCTTGATTGTTGCAGGCCCCTGGAACTAATGAACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGACGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGCGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCGGAAGAAGATGAGAAAAAGAAGACGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAACCCGAACCCGCTCAAGGTCTGATCCTCTAAATTGTTGTCACGTTTGTTGATATCTATGCCTGAAAGTTCTTGTAGCTGTAATGTGTATTTCCCCTTCAAATCTGGCATGGCTATATATATATATATATTAGGATGAAAATATAGAGTAGATTTCTTCCTGAATTAGTGGTCGGACTCTTCATTGCATAAGATATCTCCATCTGCAAGAATTTTAAAACAGCAGATTTTTCATTATTGTCAACAAAGTCTCTCTGCTCTTTCTACAATGCTTATGTATCAGTGCAGTTATGGCTTGTCTTTGGATTTCAGTGATTATTT

mRNA sequence

TTGTTCGTGTCAATAGCTATTTTTCTTTCATCAGAGGCGACGAGGACTTGGACACACTGAGGGGAAATCCTTAATTCAGAATCAAGCTTTTCGTTCTAATTTCGTGTAGATTTCAGTTTTCCGGCGATCGTCGGTTGATTCGATATCTGTTCCGGCGATTTATGTTCGTCATTTCTAGCAATGTCGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCTCCTGAAGCTACCGCACCACCCCCTGCCCCTGGAACTAATGAACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGACGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGCGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCGGAAGAAGATGAGAAAAAGAAGACGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAACCCGAACCCGCTCAAGGTCTGATCCTCTAAATTGTTGTCACGTTTGTTGATATCTATGCCTGAAAGTTCTTGTAGCTGTAATGTGTATTTCCCCTTCAAATCTGGCATGGCTATATATATATATATATTAGGATGAAAATATAGAGTAGATTTCTTCCTGAATTAGTGGTCGGACTCTTCATTGCATAAGATATCTCCATCTGCAAGAATTTTAAAACAGCAGATTTTTCATTATTGTCAACAAAGTCTCTCTGCTCTTTCTACAATGCTTATGTATCAGTGCAGTTATGGCTTGTCTTTGGATTTCAGTGATTATTT

Coding sequence (CDS)

ATGTCGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGCGACATTGCATATGTTGAAATGCAGAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATACACAAGGAGCAGAGACTGCCATTCTTTTGTCTGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCTCCTGAAGCTACCGCACCACCCCCTGCCCCTGGAACTAATGAACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTCAGCAGTATGCTTGCTAAGGGCTTTATCTTGGGCAAAGACGCACTCAACTCTGCAAAGGCATTTGATGAGAAGCACCAATTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATCGGGTTCACTGAGAAACTTAGCGCTGGAACGGTTTTGGTGGGCGAAAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCGGAAGAAGATGAGAAAAAGAAGACGACGGTCGAAACTTTGCATCTCCCCGAATCCCCTAAAGCAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAACCCGAACCCGCTCAAGGTCTGATCCTCTAA

Protein sequence

MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAILLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEEDEKKKTTVETLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL

Homology

[Close]

BLAST of Cp4.1LG14g09780.1 vs. Swiss-Prot
Match: BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.0e-67
Identity = 148/255 (58.04%), Postives = 188/255 (73.73%), Query Frame = 1


Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAILLS 62
           V++VKV N+S GA+E D+KEFFSFSG++  +++QS       AYVTFK+TQGAETA+LLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS---AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDLSVNITPCPDYVLPPEATAPPPAP-GTNEPGTAESAYQKAEDVVSSMLAKGFIL 122
           GA+I D SV I   P+Y       +PP AP    +   AES  QKAEDVVSSMLAKGFIL
Sbjct: 65  GASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKGFIL 124

Query: 123 GKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVSE 182
           GKDA+  AKAFDEKH  +STA+A VA+LD+KIG ++KL+AGT LV EK++ VDQ FQV+E
Sbjct: 125 GKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTE 184

Query: 183 KTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEE 242
           +TKS +A AE+ VS+AG+A+M NRYV +G SW A  FN+VA+AAGEVGQKTKEK+   E 
Sbjct: 185 RTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKV---EA 244

Query: 243 DEKKKTTVETLHLPE 257
           ++  +       LPE
Sbjct: 245 EQPSQPAQSQQQLPE 246

[Close]

BLAST of Cp4.1LG14g09780.1 vs. TrEMBL
Match: A0A0A0L545_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008890 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 1.3e-121
Identity = 240/284 (84.51%), Postives = 260/284 (91.55%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           MS+KTV+VSNVSLGASERD+KEFFSFSGDI Y+EMQSE+ERSQ AYVTFKD QGAETA+L
Sbjct: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFI 120
           LSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQL+STASAKVAT DKKIGFTEK+SAGT LV +KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSE 240
           EKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFN+VAKAAGEVGQKTKEK+ V+E
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           E++KKKT  +   +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of Cp4.1LG14g09780.1 vs. TrEMBL
Match: A9PE83_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 2.4e-96
Identity = 205/284 (72.18%), Postives = 235/284 (82.75%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           MSVKTVKVSNVSLGASERDLKEFFSFSGDI YVEM+S++ERSQIAYVTFKD+QGA+TA+L
Sbjct: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIEYVEMKSDNERSQIAYVTFKDSQGADTAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFI 120
           LSGATIVDLSV +   PDY LPP A A   A G   PG  ESA +KAEDVVS MLAKGFI
Sbjct: 61  LSGATIVDLSVTVALDPDYQLPPAALAELSATGNKAPGD-ESALRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVS 180
           LGKDA+N AK FDEKHQL+STASAKV + DKKIG TEK+SAGT +VG+KVREVDQKFQVS
Sbjct: 121 LGKDAINKAKGFDEKHQLTSTASAKVVSFDKKIGLTEKISAGTTVVGDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSE 240
           EKTKSAFAVAE+KVS+AG+AIMSNRYV +G +WV   FNKVAKAAG+VGQK KEK  ++E
Sbjct: 181 EKTKSAFAVAEQKVSSAGSAIMSNRYVFTGAAWVTGAFNKVAKAAGDVGQKAKEKAGMAE 240

Query: 241 EDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           E++K+K   +   +HL ESPKA++    +P    KP PAQGLIL
Sbjct: 241 EEQKRKMVDDFAQVHLSESPKASSASDQKPS---KPPPAQGLIL 280

[Close]

BLAST of Cp4.1LG14g09780.1 vs. TrEMBL
Match: B9GLU8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s02090g PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 3.1e-96
Identity = 205/284 (72.18%), Postives = 234/284 (82.39%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           MSVKTVKVSNVSLGASERDLKEFFSFSGDI YVEM+S++ERSQIAYVTFKD+QGA+TA+L
Sbjct: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIEYVEMKSDNERSQIAYVTFKDSQGADTAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFI 120
           LSGATIVDLSV +   PDY LPP A A   A G   PG  ESA +KAEDVVS MLAKGFI
Sbjct: 61  LSGATIVDLSVTVALDPDYQLPPAALAELSATGNKAPGD-ESALRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVS 180
           LGKDA+N AK FDEKHQL+STASAKV + DKKIG TEK+SAGT +VG+KVREVDQKFQVS
Sbjct: 121 LGKDAINKAKGFDEKHQLTSTASAKVVSFDKKIGLTEKISAGTTVVGDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSE 240
           EKTKSAFAVAE+KVS+AG+AIMSNRYV +G +WV   FNKVAKAAG+VGQK KEK  ++E
Sbjct: 181 EKTKSAFAVAEQKVSSAGSAIMSNRYVFTGAAWVTGAFNKVAKAAGDVGQKAKEKAGMAE 240

Query: 241 EDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           E++K+K   +   +HL ESPKA+     +P    KP PAQGLIL
Sbjct: 241 EEQKRKMVDDFAQVHLSESPKASGASDQKPS---KPPPAQGLIL 280

[Close]

BLAST of Cp4.1LG14g09780.1 vs. TrEMBL
Match: A0A061G7T0_THECC (RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 OS=Theobroma cacao GN=TCM_016568 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 5.3e-96
Identity = 200/282 (70.92%), Postives = 232/282 (82.27%), Query Frame = 1


Query: 2   SVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAILL 61
           S+KTVKVSNVSLGA++RD+KEFFSFSGDI YVEMQS++E+SQ+AYVTFKD+QGAETA+LL
Sbjct: 3   SIKTVKVSNVSLGATQRDVKEFFSFSGDIEYVEMQSDNEQSQVAYVTFKDSQGAETAVLL 62

Query: 62  SGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFIL 121
           +GA IVDLSV+IT  PDY LPP A  PP A     PG  +SA +KAEDVVS MLAKGFIL
Sbjct: 63  TGAIIVDLSVSITLAPDYKLPPAAFLPPSAIQNKTPGGGDSAIRKAEDVVSGMLAKGFIL 122

Query: 122 GKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVSE 181
           GKDA+N AK FDEKHQL+STASAKVA+ DKKIGFTEK++AGT +V  KVREVDQKFQVSE
Sbjct: 123 GKDAVNKAKTFDEKHQLTSTASAKVASFDKKIGFTEKITAGTTVVSGKVREVDQKFQVSE 182

Query: 182 KTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEE 241
           KTKSAFA AE+KVS+AG+AIM NRYV +G SWV   FNKVAKAAG+VGQKTKEK+  +EE
Sbjct: 183 KTKSAFAAAEQKVSSAGSAIMKNRYVFTGASWVTGAFNKVAKAAGDVGQKTKEKVGEAEE 242

Query: 242 DEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLI 282
           + K+K   +   +HL ESPKA+A   P  Q   KP PAQGLI
Sbjct: 243 ERKRKVVDDFAQIHLSESPKASA---PSEQPLSKPAPAQGLI 281

[Close]

BLAST of Cp4.1LG14g09780.1 vs. TrEMBL
Match: A0A059BZT5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00244 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 6.9e-96
Identity = 201/285 (70.53%), Postives = 234/285 (82.11%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           MS+ TVKVSNVSLGA+ERDLKEFFSFSGDIAYVEM S++ERSQ+AYVTFKD QGAETAI+
Sbjct: 1   MSLTTVKVSNVSLGATERDLKEFFSFSGDIAYVEMHSDTERSQVAYVTFKDAQGAETAIM 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNE-PGTAESAYQKAEDVVSSMLAKGF 120
           LSGATIVD+SV+I   PDY LPP+A APP     N+ P   +SA +KAEDVV+SMLAKGF
Sbjct: 61  LSGATIVDMSVSIAHAPDYKLPPDAIAPPVKVTENKSPAGGDSALRKAEDVVTSMLAKGF 120

Query: 121 ILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQV 180
           ILGKDA+N AK+ DEKHQL+STAS+KVA+ DKKIG TEK+S GT +VG KVREVDQKFQV
Sbjct: 121 ILGKDAVNKAKSLDEKHQLTSTASSKVASFDKKIGLTEKISVGTAVVGGKVREVDQKFQV 180

Query: 181 SEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVS 240
           SEKTKSAF  AE+KVS+AG+AIM NRYV +G SWV   FNKVAKAAGEVGQKTKEK+ ++
Sbjct: 181 SEKTKSAFVAAEQKVSSAGSAIMKNRYVFTGASWVTGAFNKVAKAAGEVGQKTKEKVGMA 240

Query: 241 EEDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           EE++K+K   +   +HL ESPKA A   P+P    K EP QGLIL
Sbjct: 241 EEEQKRKVVDDFAQIHLSESPKATASAEPKPS---KHEPVQGLIL 282

[Close]

BLAST of Cp4.1LG14g09780.1 vs. TAIR10
Match: AT4G17720.1 (AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 327.0 bits (837), Expect = 1.1e-89
Identity = 181/265 (68.30%), Postives = 216/265 (81.51%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           M++ TVKVSNVSLGA++RDLKEFFSFSGDI Y+E QSE+ER+++AYVTFKD QGAETA+L
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAP-PPAPGTNEPGTAESAYQKAEDVVSSMLAKGF 120
           LSGATIVD SV ++  PDY L PEA A   P      P   +S  +KAEDVVSSMLAKGF
Sbjct: 61  LSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLAKGF 120

Query: 121 ILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQV 180
           ILGKDA+  AK+ DEKHQL+STASAKVA+ DKKIGFT+K++ GTV+VGEKVREVDQK+QV
Sbjct: 121 ILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQKYQV 180

Query: 181 SEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVS 240
           SEKTKSA A AE+ VSNAG+AIM NRYV +G +WV   FNKVAKAA EVGQK KEK+ ++
Sbjct: 181 SEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGMA 240

Query: 241 EEDEKKKTTVE--TLHLPESPKAAA 263
           EE++K+K   E   +HL ESPKAA+
Sbjct: 241 EEEDKRKVVDEFARVHLSESPKAAS 265

[Close]

BLAST of Cp4.1LG14g09780.1 vs. TAIR10
Match: AT5G46870.1 (AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 302.4 bits (773), Expect = 3.0e-82
Identity = 167/269 (62.08%), Postives = 212/269 (78.81%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           MS+ TVKVSNVSL A+ERDLKEFFSFSGDIAY+E QSE++ S++AYVTFKD QGAETA+L
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAE-----SAYQKAEDVVSSML 120
           L+G+TIVD SV +T  PDY LPP+A A   +   +   ++      S ++KAEDVVS M+
Sbjct: 61  LTGSTIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMI 120

Query: 121 AKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQ 180
           +KGF+LGKDA+  AK+ DEKHQL+STASA+V + DK+IGFTEK++ GT +V EKV+EVDQ
Sbjct: 121 SKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQ 180

Query: 181 KFQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEK 240
           KFQV+EKTKSA A AE+ VSNAG+AIM NRYV +G +WV   FN+V+KAA EVGQK KEK
Sbjct: 181 KFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKAKEK 240

Query: 241 IAVSEEDEKKK----TTVETLHLPESPKA 261
           + ++EE+E++K      V  +HL ESPKA
Sbjct: 241 VGLAEEEEEEKKKVVDEVAIVHLTESPKA 269

[Close]

BLAST of Cp4.1LG14g09780.1 vs. TAIR10
Match: AT5G16840.2 (AT5G16840.2 binding partner of acd11 1)

HSP 1 Score: 261.5 bits (667), Expect = 5.8e-70
Identity = 150/255 (58.82%), Postives = 191/255 (74.90%), Query Frame = 1


Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAILLS 62
           V++VKV N+S GA+E D+KEFFSFSG++  +++QS +E S  AYVTFK+TQGAETA+LLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDLSVNITPCPDYVLPPEATAPPPAP-GTNEPGTAESAYQKAEDVVSSMLAKGFIL 122
           GA+I D SV I   P+Y       +PP AP    +   AES  QKAEDVVSSMLAKGFIL
Sbjct: 65  GASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKGFIL 124

Query: 123 GKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVSE 182
           GKDA+  AKAFDEKH  +STA+A VA+LD+KIG ++KL+AGT LV EK++ VDQ FQV+E
Sbjct: 125 GKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTE 184

Query: 183 KTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEE 242
           +TKS +A AE+ VS+AG+A+M NRYV +G SW A  FN+VA+AAGEVGQKTKEK+   E 
Sbjct: 185 RTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKV---EA 244

Query: 243 DEKKKTTVETLHLPE 257
           ++  +       LPE
Sbjct: 245 EQPSQPAQSQQQLPE 247

[Close]

BLAST of Cp4.1LG14g09780.1 vs. TAIR10
Match: AT1G67950.3 (AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 237.7 bits (605), Expect = 9.0e-63
Identity = 140/263 (53.23%), Postives = 183/263 (69.58%), Query Frame = 1


Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAILLS 62
           VKTVK+SNVSL  S++D+KEFFSFSGDI YVEM+SE++ SQ+AYVTFKD+QGAETA+LL+
Sbjct: 28  VKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAMLLT 87

Query: 63  GATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFILG 122
           GA I DL V+ITP  +Y LPPEA A      + E      + +KAEDVV+ M+ +G+ LG
Sbjct: 88  GAVIADLRVSITPAVNYQLPPEALALD----SQEHSFNGFSVKKAEDVVNIMVGRGYALG 147

Query: 123 KDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVSEK 182
           KDA+  AKAFD++H L S ASA +A+LD K+G +EKLS GT +V EK+R++D+++QV E 
Sbjct: 148 KDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVVNEKLRDIDERYQVREI 207

Query: 183 TKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEED 242
           TKSA A AEE   +A  A+M+N YV SG SW ++ F  V KA        KEK+    E 
Sbjct: 208 TKSALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKA-------VKEKVENGGEG 267

Query: 243 EKKKTTVETLHLPESPKAAAPVP 266
            K+  T++    P SPK  A VP
Sbjct: 268 RKEIITLD----PSSPKVPAVVP 275

[Close]

BLAST of Cp4.1LG14g09780.1 vs. TAIR10
Match: AT5G32450.1 (AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-53
Identity = 122/261 (46.74%), Postives = 170/261 (65.13%), Query Frame = 1


Query: 2   SVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAILL 61
           + ++V+V+NVS  A+ER++ EFFSFSGDI ++E+Q E  +S+IA+VTF D +  E A+LL
Sbjct: 3   TTRSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLL 62

Query: 62  SGATIVDLSVNITPCPDYV--------------LPPEATAPPPAPGTNEPGTAESAYQKA 121
           SGATIVD  V IT   +YV              +P           TN  G + +   KA
Sbjct: 63  SGATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYVSKA 122

Query: 122 EDVVSSMLAKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVG 181
           +DVV+++LAKG  LG+DA+N AKAFDEKHQL + ASAKV++ DK++G TEKLS G   V 
Sbjct: 123 QDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISAVN 182

Query: 182 EKVREVDQKFQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGE 241
           EKV+ VDQK QVS+KT +A   AE K+++ G+A+ S+RYV +G +W +  F+KVA+    
Sbjct: 183 EKVKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARVGQV 242

Query: 242 VGQKTKEKIAVSEEDEKKKTT 249
            G KTKEK  ++  +   K T
Sbjct: 243 AGSKTKEKFNLAVSNMSSKDT 263

[Close]

BLAST of Cp4.1LG14g09780.1 vs. NCBI nr
Match: gi|659095580|ref|XP_008448657.1| (PREDICTED: uncharacterized protein LOC103490760 isoform X1 [Cucumis melo])

HSP 1 Score: 448.4 bits (1152), Expect = 9.5e-123
Identity = 243/284 (85.56%), Postives = 261/284 (91.90%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           MS+KTVKVSNVSLGASERD+KEFFSFSGDI Y+EMQSE+ERSQ AYVTFKD QGAETA+L
Sbjct: 1   MSIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFI 120
           LSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQL+STASAKVATLDKKIGFTEK+SAGT LV +KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSE 240
           EKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFNKVAKAAGEVGQKTKEK+ V+E
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           E++KKKT  +   +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of Cp4.1LG14g09780.1 vs. NCBI nr
Match: gi|659095582|ref|XP_008448658.1| (PREDICTED: uncharacterized protein LOC103490760 isoform X2 [Cucumis melo])

HSP 1 Score: 446.8 bits (1148), Expect = 2.8e-122
Identity = 242/284 (85.21%), Postives = 260/284 (91.55%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           M +KTVKVSNVSLGASERD+KEFFSFSGDI Y+EMQSE+ERSQ AYVTFKD QGAETA+L
Sbjct: 1   MQIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFI 120
           LSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQL+STASAKVATLDKKIGFTEK+SAGT LV +KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSE 240
           EKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFNKVAKAAGEVGQKTKEK+ V+E
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           E++KKKT  +   +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of Cp4.1LG14g09780.1 vs. NCBI nr
Match: gi|449462041|ref|XP_004148750.1| (PREDICTED: uncharacterized protein LOC101207930 isoform X1 [Cucumis sativus])

HSP 1 Score: 444.1 bits (1141), Expect = 1.8e-121
Identity = 240/284 (84.51%), Postives = 260/284 (91.55%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           MS+KTV+VSNVSLGASERD+KEFFSFSGDI Y+EMQSE+ERSQ AYVTFKD QGAETA+L
Sbjct: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFI 120
           LSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQL+STASAKVAT DKKIGFTEK+SAGT LV +KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSE 240
           EKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFN+VAKAAGEVGQKTKEK+ V+E
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           E++KKKT  +   +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of Cp4.1LG14g09780.1 vs. NCBI nr
Match: gi|778675001|ref|XP_011650336.1| (PREDICTED: uncharacterized protein LOC101207930 isoform X2 [Cucumis sativus])

HSP 1 Score: 442.6 bits (1137), Expect = 5.2e-121
Identity = 239/284 (84.15%), Postives = 259/284 (91.20%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           M +KTV+VSNVSLGASERD+KEFFSFSGDI Y+EMQSE+ERSQ AYVTFKD QGAETA+L
Sbjct: 1   MQIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFI 120
           LSGATIVDLSVNIT CPDY LPPEATAPPPAPGT  PG AESA++KAEDVVS MLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQL+STASAKVAT DKKIGFTEK+SAGT LV +KVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSE 240
           EKTKSAFAVAEEKVSNAG+AIM NRYV SGTSWVADTFN+VAKAAGEVGQKTKEK+ V+E
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           E++KKKT  +   +HL ESPKAA+  P EPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of Cp4.1LG14g09780.1 vs. NCBI nr
Match: gi|743809448|ref|XP_011018509.1| (PREDICTED: uncharacterized protein LOC105121532 isoform X1 [Populus euphratica])

HSP 1 Score: 360.1 bits (923), Expect = 3.4e-96
Identity = 204/284 (71.83%), Postives = 234/284 (82.39%), Query Frame = 1


Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDTQGAETAIL 60
           MSVKTVKVSNVSLGASERDLKEFFSFSGDI YVEM+S++ERSQIAYVTFKD+QGA+TA+L
Sbjct: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIEYVEMKSDNERSQIAYVTFKDSQGADTAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNEPGTAESAYQKAEDVVSSMLAKGFI 120
           LSGATIVDLSV +   PDY LPP A A   A G   PG  ESA++KAEDVVS MLAKGFI
Sbjct: 61  LSGATIVDLSVTVALDPDYELPPAALAELSATGNKAPGD-ESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKLSAGTVLVGEKVREVDQKFQVS 180
           LGKDA+N AK FDEKHQL+STASAKV + DKKIG TEK+SAGT +VG+KVREVDQKFQVS
Sbjct: 121 LGKDAINKAKGFDEKHQLTSTASAKVVSFDKKIGLTEKISAGTTVVGDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSE 240
           EKTKSAFA AE+KVS AG+AIMSNRYV +G +WV   FNKVAKAAG+VGQK KEK+ ++E
Sbjct: 181 EKTKSAFAAAEQKVSTAGSAIMSNRYVFTGAAWVTGAFNKVAKAAGDVGQKAKEKVGMAE 240

Query: 241 EDEKKKTTVE--TLHLPESPKAAAPVPPEPQQRPKPEPAQGLIL 283
           E++K+K   +   +HL ESPKA+     +P    KP PAQGLIL
Sbjct: 241 EEQKRKMVDDFAQVHLSESPKASDASDQKPS---KPPPAQGLIL 280

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g09780.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BPA1_ARATH	2.0e-67	58.04	Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1	[more]

BLAST of Cp4.1LG14g09780.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L545_CUCSA	1.3e-121	84.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008890 PE=4 SV=1	[more]
A9PE83_POPTR	2.4e-96	72.18	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
B9GLU8_POPTR	3.1e-96	72.18	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s02090g PE=4 SV=1	[more]
A0A061G7T0_THECC	5.3e-96	70.92	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 OS=Theobroma cacao GN=...	[more]
A0A059BZT5_EUCGR	6.9e-96	70.53	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00244 PE=4 SV=1	[more]

BLAST of Cp4.1LG14g09780.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17720.1	1.1e-89	68.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	3.0e-82	62.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	5.8e-70	58.82	binding partner of acd11 1	[more]
AT1G67950.3	9.0e-63	53.23	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G32450.1	1.3e-53	46.74	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cp4.1LG14g09780.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095580\|ref\|XP_008448657.1\|	9.5e-123	85.56	PREDICTED: uncharacterized protein LOC103490760 isoform X1 [Cucumis melo]	[more]
gi\|659095582\|ref\|XP_008448658.1\|	2.8e-122	85.21	PREDICTED: uncharacterized protein LOC103490760 isoform X2 [Cucumis melo]	[more]
gi\|449462041\|ref\|XP_004148750.1\|	1.8e-121	84.51	PREDICTED: uncharacterized protein LOC101207930 isoform X1 [Cucumis sativus]	[more]
gi\|778675001\|ref\|XP_011650336.1\|	5.2e-121	84.15	PREDICTED: uncharacterized protein LOC101207930 isoform X2 [Cucumis sativus]	[more]
gi\|743809448\|ref\|XP_011018509.1\|	3.4e-96	71.83	PREDICTED: uncharacterized protein LOC105121532 isoform X1 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG14g09780	Cp4.1LG14g09780	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG14g09780.1	Cp4.1LG14g09780.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG14g09780.1:five_prime_utr:001	Cp4.1LG14g09780.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG14g09780.1:cds:001	Cp4.1LG14g09780.1:cds:001	CDS
Cp4.1LG14g09780.1:cds:002	Cp4.1LG14g09780.1:cds:002	CDS
Cp4.1LG14g09780.1:cds:003	Cp4.1LG14g09780.1:cds:003	CDS
Cp4.1LG14g09780.1:cds:004	Cp4.1LG14g09780.1:cds:004	CDS
Cp4.1LG14g09780.1:cds:005	Cp4.1LG14g09780.1:cds:005	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG14g09780.1:three_prime_utr:001	Cp4.1LG14g09780.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 7..66 score: 1.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 5..74 score: 5.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 4..78 score: 10
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 4..71 score: 5.
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 3..76 score: 1.15