Cp4.1LG14g05670 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG14g05670
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG14 : 849883 .. 851568 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATTATTCACCTATGTGGAGTGGTATACTTGTTTATATTAACATCAAAGAAAGGGACTCTTGATAAACTTGCTATTTCATCTGCCATCACTGGTTTCTTTTCGTTGTTTGTCGGAGAACTAGGTCGCTAGTGATACTCTAACCTTTTGCACCTATTTTCATACACATCTTTATATGTTTTAACATTAGTGGTTGATTATTTTCCAATGTACAGGCCGAAGGCACAGCCGTGCAAGCTTCATGAAAGTATATATGATTGCCTCATCTCTTGCACTCCTACTACTTCTTTTTGATGTCTCTCAGGGTAATTACACGTTTGAGGTATGGAAAACTAATCCATTTTCCGCTGTGCTGCTCTAAGAGAGAAATCAAATGGAAAGGTTATCGAGCAAGAGCTTAACTGGAATTGTTATGCATGTTGACTAGTTGAAGAAGCAATAGCAATGGAGACGATAAATTAAATTGGTGGGTAAAAATTTAGGTAGGGATCCATCTGGGAGATCGCACAATGGTTGGGGAGGAGACCGAAATATTGTTTATAAGAGTTCGGAAACTTCTCTCTAGTAGATGTGTTTTAAAAACCTTGAGCGGAAGCCCGAAAGAAAAAACCTAAAGAAGACAATATCTGCTGGCGATGGAGTTGGGTTATTGTAAATGGTATCAGAGTCAGACATTGGGTGATGTACCAGCGAGGAGGCTGAGCCCCGAAGGGGGTGGACACGAGGCGGTGTGCCAGTGAGGACGCTGGGCCCCGAAGGGTGGTGGATTGTGAGATCCCACATCGCTTGGAGAGGAGAACGAAACATTTTTTACAAAAGTGTGGAAACTTCTTTCTAGTAGACGTATTTTAAAAACCTTGAGGGGAAGTTCGAAAGGGAAAGTCCAAAGAGGACAATATCTTCTAGCGGTGGACTTGGGCTATTTCACCATCTTTGTATTTCCCATTAATGAGCATGCCTTCTTCAAGCTTTTATAGTTGTTGAGACTCCATAGATTCATTGTTAGCTTAGCTTTGTTACCCTTGGCATCTATACTTGAAAATGGTGGGAAGCTTCATTTTGATTGGCTGATTGTTTTTATAACTCTATGGCCTTTGATCACAGCTTCCATGTGGTAATGTCTGTTATGAATGGTGCTTTATTCTTCATTCTAACTGAGTTTGGACTCTCATGAACCATTTAGGGTATGGGGGATCTAAGTAATTGGAAGGCGAAAAAGCTCGAACTTTTCGAGATGATCCGCATTTGTCTTGGTGGGTTTCACATTACATAGGTTATCTTCATTGTTTTCATATTCATACGTAAGAACTAAGATTGGAATTCTGATATGTGTTCATACAGGGGCTCTGCTTCAGATATTTGCAACCAGCACAGTGATTTCCCTCGTCGGTAACATGTCTCTTCCAAAACGTGCCTCTTAATTATTGTGTACCAAACTGTTGCCCTTCTAACGACCAGGAAAGATCTCTCTACTGTTTCCTTCTGGATTCTGAATCCAAAAATCATGCACAAGAAGGCTTGGATTTGTCTTGTCTCTCTAAATCATTATTACAGAATGGTTTCACTTGGATGTTGAAATTGGTGGAGTAAAATATAAAGGGTATAAACAAAATTTTCTGGAATTTTCTTTTTTGATGGGATTGACAATGATTGAACTCTTTTGTTGACATGCTTACAACACGCCTT

mRNA sequence

GTTATTATTCACCTATGTGGAGTGGTATACTTGTTTATATTAACATCAAAGAAAGGGACTCTTGATAAACTTGCTATTTCATCTGCCATCACTGGCCGAAGGCACAGCCGTGCAAGCTTCATGAAAGTATATATGATTGCCTCATCTCTTGCACTCCTACTACTTCTTTTTGATGTCTCTCAGGGTAATTACACGTTTGAGGGTATGGGGGATCTAAGTAATTGGAAGGCGAAAAAGCTCGAACTTTTCGAGATGATCCGCATTTGTCTTGGGGCTCTGCTTCAGATATTTGCAACCAGCACAGTGATTTCCCTCGTCGGTAACATGTCTCTTCCAAAACGTGCCTCTTAATTATTGTGTACCAAACTGTTGCCCTTCTAACGACCAGGAAAGATCTCTCTACTGTTTCCTTCTGGATTCTGAATCCAAAAATCATGCACAAGAAGGCTTGGATTTGTCTTGTCTCTCTAAATCATTATTACAGAATGGTTTCACTTGGATGTTGAAATTGGTGGAGTAAAATATAAAGGGTATAAACAAAATTTTCTGGAATTTTCTTTTTTGATGGGATTGACAATGATTGAACTCTTTTGTTGACATGCTTACAACACGCCTT

Coding sequence (CDS)

GTTATTATTCACCTATGTGGAGTGGTATACTTGTTTATATTAACATCAAAGAAAGGGACTCTTGATAAACTTGCTATTTCATCTGCCATCACTGGCCGAAGGCACAGCCGTGCAAGCTTCATGAAAGTATATATGATTGCCTCATCTCTTGCACTCCTACTACTTCTTTTTGATGTCTCTCAGGGTAATTACACGTTTGAGGGTATGGGGGATCTAAGTAATTGGAAGGCGAAAAAGCTCGAACTTTTCGAGATGATCCGCATTTGTCTTGGGGCTCTGCTTCAGATATTTGCAACCAGCACAGTGATTTCCCTCGTCGGTAACATGTCTCTTCCAAAACGTGCCTCTTAA

Protein sequence

VIIHLCGVVYLFILTSKKGTLDKLAISSAITGRRHSRASFMKVYMIASSLALLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGALLQIFATSTVISLVGNMSLPKRAS

Homology

[Close]

BLAST of Cp4.1LG14g05670 vs. TrEMBL
Match: A0A0A0L667_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175730 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.9e-40
Identity = 96/126 (76.19%), Postives = 104/126 (82.54%), Query Frame = 1


Query: 1   VIIHLCGVVYLFILTSKKGTLDKLAISSAITG----------RRHSRASFMKVYMIASSL 60
           V+I LCGV YLF+LTSKK T DKLAISSAITG          +RHSR SF+KVY IASSL
Sbjct: 47  VVIQLCGVAYLFLLTSKKETPDKLAISSAITGFFSLFIGELGQRHSRTSFLKVYAIASSL 106

Query: 61  ALLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGALLQIFATSTVISLVGNMS 117
           +LLLLL DVSQGNYTFE +GDLSNW+AK+LELFEMIRI LGALLQIFA STVISLV NMS
Sbjct: 107 SLLLLLVDVSQGNYTFESIGDLSNWQAKQLELFEMIRISLGALLQIFAISTVISLVSNMS 166

[Close]

BLAST of Cp4.1LG14g05670 vs. TrEMBL
Match: B9R9R1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1500150 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 54/125 (43.20%), Postives = 80/125 (64.00%), Query Frame = 1


Query: 2   IIHLCGVVYLFILTSKKGTLDKLAISSAITG----------RRHSRASFMKVYMIASSLA 61
           +I L G++ + +  S +   ++LAI S++ G          RR SR SF++VY+I S +A
Sbjct: 46  VIQLIGLLCIVLSISNEKGANRLAILSSVIGFFSLLTGELGRRRSRVSFLRVYIITSFIA 105

Query: 62  LLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGALLQIFATSTVISLVGNMSL 117
           LLL +F  +  N T E + +LS+W+  K EL E + + LG+LLQ+F  STVISL+GNMS 
Sbjct: 106 LLLSIFCATASNSTLEVIQNLSHWEKNKFELVETLLLILGSLLQLFTISTVISLIGNMSP 165

[Close]

BLAST of Cp4.1LG14g05670 vs. TrEMBL
Match: M5XDW6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012396mg PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.7e-14
Identity = 55/125 (44.00%), Postives = 72/125 (57.60%), Query Frame = 1


Query: 2   IIHLCGVVYLFILTSKKGTLDKLAISSAITG----------RRHSRASFMKVYMIASSLA 61
           +I L GV+  F+ TS     + +AISS   G          RR SR S +KVY++ASS+ 
Sbjct: 48  VIQLIGVL-AFLFTSNGEGPNVIAISSFAIGSISLIIGELGRRRSRVSLLKVYIVASSIG 107

Query: 62  LLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGALLQIFATSTVISLVGNMSL 117
           +LL +  V+ GN T E   + SNW+ KK EL E  R  +  L+QIF  ST  SL+ NMS 
Sbjct: 108 ILLSIACVATGNLTLEVFQNPSNWETKKFELLEATRTAIAFLVQIFTVSTTASLISNMSP 167

[Close]

BLAST of Cp4.1LG14g05670 vs. TrEMBL
Match: V4U6R7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006041mg PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 50/124 (40.32%), Postives = 77/124 (62.10%), Query Frame = 1


Query: 3   IHLCGVVYLFILTSKKGTLDKLAISSAIT----------GRRHSRASFMKVYMIASSLAL 62
           I L G+++ F+L SK+   + L++SSA            G++ SR S ++V ++ASS+A+
Sbjct: 50  IQLIGLLFTFVLNSKEEGPNPLSLSSASLGLVSLIIGELGQKRSRVSLLRVCVVASSIAV 109

Query: 63  LLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGALLQIFATSTVISLVGNMSLP 117
           LL +F V + N   E + + S W+ KK EL E  R+ +G+ +QIF  ST ISLV NMS P
Sbjct: 110 LLSVFSVVRTNSILEVINNPSIWETKKFELLETARVLIGSSVQIFLVSTTISLVHNMSPP 169

[Close]

BLAST of Cp4.1LG14g05670 vs. TrEMBL
Match: A0A068UX27_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00037519001 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.9e-13
Identity = 47/125 (37.60%), Postives = 76/125 (60.80%), Query Frame = 1


Query: 2   IIHLCGVVYLFILTSKKGTLDKLAISSAIT----------GRRHSRASFMKVYMIASSLA 61
           II L   V +F+ T+K   LDK+A+SS++           GR+ SRASF+K+YM+ SS+A
Sbjct: 48  IIQLLAAVNVFLSTTKMEELDKIAVSSSVICFISLFIGELGRKRSRASFLKLYMLGSSIA 107

Query: 62  LLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGALLQIFATSTVISLVGNMSL 117
           +L+   ++S+  Y  + + D S+W    LEL ++    LG ++Q++  ST  SL+ NM+ 
Sbjct: 108 VLISTANLSRSAYVVQVIKDFSSWGTSMLELSKVATGLLGFVVQLYTISTTTSLIRNMAP 167

[Close]

BLAST of Cp4.1LG14g05670 vs. NCBI nr
Match: gi|659077236|ref|XP_008439098.1| (PREDICTED: uncharacterized protein LOC103483988 [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-40
Identity = 96/126 (76.19%), Postives = 105/126 (83.33%), Query Frame = 1


Query: 1   VIIHLCGVVYLFILTSKKGTLDKLAISSAITG----------RRHSRASFMKVYMIASSL 60
           ++I LCGV YLFILTSKK T DKLAISSAITG          +RHSR SF+KVY+IASSL
Sbjct: 47  IVIQLCGVAYLFILTSKKETPDKLAISSAITGFFSLFIGELGQRHSRTSFLKVYVIASSL 106

Query: 61  ALLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGALLQIFATSTVISLVGNMS 117
           +LLLLL DVSQGNYTFE +GDLSNW+ K+LELFEMIRI LGALLQIFA STVISLVGNMS
Sbjct: 107 SLLLLLVDVSQGNYTFESIGDLSNWQTKQLELFEMIRISLGALLQIFAISTVISLVGNMS 166

[Close]

BLAST of Cp4.1LG14g05670 vs. NCBI nr
Match: gi|449460816|ref|XP_004148140.1| (PREDICTED: uncharacterized protein LOC101211693 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 7.1e-40
Identity = 96/126 (76.19%), Postives = 104/126 (82.54%), Query Frame = 1


Query: 1   VIIHLCGVVYLFILTSKKGTLDKLAISSAITG----------RRHSRASFMKVYMIASSL 60
           V+I LCGV YLF+LTSKK T DKLAISSAITG          +RHSR SF+KVY IASSL
Sbjct: 47  VVIQLCGVAYLFLLTSKKETPDKLAISSAITGFFSLFIGELGQRHSRTSFLKVYAIASSL 106

Query: 61  ALLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGALLQIFATSTVISLVGNMS 117
           +LLLLL DVSQGNYTFE +GDLSNW+AK+LELFEMIRI LGALLQIFA STVISLV NMS
Sbjct: 107 SLLLLLVDVSQGNYTFESIGDLSNWQAKQLELFEMIRISLGALLQIFAISTVISLVSNMS 166

[Close]

BLAST of Cp4.1LG14g05670 vs. NCBI nr
Match: gi|694389744|ref|XP_009370480.1| (PREDICTED: uncharacterized protein LOC103959836 [Pyrus x bretschneideri])

HSP 1 Score: 95.9 bits (237), Expect = 4.9e-17
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 1


Query: 2   IIHLCGVVYLFILTSKKGTLDKLAISSAIT----------GRRHSRASFMKVYMIASSLA 61
           +IHL GV+Y F+ TS     + +AISS             GRR SR S +KVYM+AS + 
Sbjct: 48  VIHLTGVLYAFLFTSDGEGPNVIAISSVAIGSISLIIGELGRRRSRVSLLKVYMVASFIG 107

Query: 62  LLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGALLQIFATSTVISLVGNMSL 117
           +LL +  V++G+ T   + + SNW+ KK EL E  R  +  L+QIFA ST  SL+GNMS 
Sbjct: 108 ILLSIACVAKGSLTLAVLQNSSNWETKKFELVEATRTVIAFLVQIFAISTTTSLIGNMSP 167

[Close]

BLAST of Cp4.1LG14g05670 vs. NCBI nr
Match: gi|657969443|ref|XP_008376440.1| (PREDICTED: uncharacterized protein LOC103439644 [Malus domestica])

HSP 1 Score: 95.1 bits (235), Expect = 8.4e-17
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 1


Query: 2   IIHLCGVVYLFILTSKKGTLDKLAISSAITG----------RRHSRASFMKVYMIASSLA 61
           +I L GV+Y F+ TS     + +AISS   G          RR SR S +KVYM+ASS+ 
Sbjct: 48  VIQLTGVLYAFLFTSDGEGPNVIAISSVAIGSISLIIGELGRRRSRVSLLKVYMVASSIG 107

Query: 62  LLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGALLQIFATSTVISLVGNMSL 117
           +LL +  V++G+ T   + + SNW+ KK EL E  R  +  L+QIFA ST  SL+GNMS 
Sbjct: 108 ILLSIACVAKGSLTLAVLQNSSNWETKKFELVEATRTVIAFLVQIFAISTTTSLIGNMSP 167

[Close]

BLAST of Cp4.1LG14g05670 vs. NCBI nr
Match: gi|694395094|ref|XP_009372894.1| (PREDICTED: uncharacterized protein LOC103961965 [Pyrus x bretschneideri])

HSP 1 Score: 95.1 bits (235), Expect = 8.4e-17
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 1


Query: 2   IIHLCGVVYLFILTSKKGTLDKLAISSAITG----------RRHSRASFMKVYMIASSLA 61
           +I L GV+Y F+ TS     + +AISS   G          RR SR S +KVYM+ASS+ 
Sbjct: 48  VIQLTGVLYAFLFTSDGEGPNVIAISSVAIGSISLIIGELGRRRSRVSLLKVYMVASSIG 107

Query: 62  LLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGALLQIFATSTVISLVGNMSL 117
           +LL +  V++G+ T   + + SNW+ KK EL E  R  +  L+QIFA ST  SL+GNMS 
Sbjct: 108 ILLSIACVAKGSLTLAVLQNSSNWETKKFELVEATRTVIAFLVQIFAISTTTSLIGNMSP 167

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g05670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g05670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L667_CUCSA	4.9e-40	76.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175730 PE=4 SV=1	[more]
B9R9R1_RICCO	1.7e-16	43.20	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1500150 PE=4 SV=1	[more]
M5XDW6_PRUPE	4.7e-14	44.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012396mg PE=4 SV=1	[more]
V4U6R7_9ROSI	1.4e-13	40.32	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006041mg PE=4 SV=1	[more]
A0A068UX27_COFCA	3.9e-13	37.60	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00037519001 PE=4 SV=1	[more]

BLAST of Cp4.1LG14g05670 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g05670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077236\|ref\|XP_008439098.1\|	1.9e-40	76.19	PREDICTED: uncharacterized protein LOC103483988 [Cucumis melo]	[more]
gi\|449460816\|ref\|XP_004148140.1\|	7.1e-40	76.19	PREDICTED: uncharacterized protein LOC101211693 [Cucumis sativus]	[more]
gi\|694389744\|ref\|XP_009370480.1\|	4.9e-17	45.60	PREDICTED: uncharacterized protein LOC103959836 [Pyrus x bretschneideri]	[more]
gi\|657969443\|ref\|XP_008376440.1\|	8.4e-17	45.60	PREDICTED: uncharacterized protein LOC103439644 [Malus domestica]	[more]
gi\|694395094\|ref\|XP_009372894.1\|	8.4e-17	45.60	PREDICTED: uncharacterized protein LOC103961965 [Pyrus x bretschneideri]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007029	endoplasmic reticulum organization
biological_process	GO:0008150	biological_process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g05670.1	Cp4.1LG14g05670.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG14g05670	Cucsa.251590	Cucumber (Gy14) v1	cgycpeB0673
Cp4.1LG14g05670	CmaCh04G003330	Cucurbita maxima (Rimu)	cmacpeB715
Cp4.1LG14g05670	CmoCh16G001970	Cucurbita moschata (Rifu)	cmocpeB307
Cp4.1LG14g05670	CmoCh04G003500	Cucurbita moschata (Rifu)	cmocpeB668
Cp4.1LG14g05670	Csa3G175730	Cucumber (Chinese Long) v2	cpecuB214
Cp4.1LG14g05670	MELO3C006818	Melon (DHL92) v3.5.1	cpemeB190
Cp4.1LG14g05670	CSPI03G15990	Wild cucumber (PI 183967)	cpecpiB217
Cp4.1LG14g05670	Lsi05G013200	Bottle gourd (USVL1VR-Ls)	cpelsiB172
Cp4.1LG14g05670	MELO3C006818.2	Melon (DHL92) v3.6.1	cpemedB233
Cp4.1LG14g05670	CsaV3_3G016200	Cucumber (Chinese Long) v3	cpecucB0257
Cp4.1LG14g05670	Bhi01G000899	Wax gourd	cpewgoB0298
Cp4.1LG14g05670	CsGy3G016060	Cucumber (Gy14) v2	cgybcpeB327
Cp4.1LG14g05670	Carg16734	Silver-seed gourd	carcpeB1215
Cp4.1LG14g05670	Carg08009	Silver-seed gourd	carcpeB0523

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG14g05670	Cp4.1LG01g03690	Cucurbita pepo (Zucchini)	cpecpeB234

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG14g05670	Cucurbita pepo (Zucchini)	cpecpeB245
Cp4.1LG14g05670	Cucurbita maxima (Rimu)	cmacpeB344
Cp4.1LG14g05670	Watermelon (Charleston Gray)	cpewcgB207
Cp4.1LG14g05670	Watermelon (97103) v1	cpewmB227
Cp4.1LG14g05670	Silver-seed gourd	carcpeB0998