CmoCh16G001970 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G001970
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBnaA10g07910D protein
LocationCmo_Chr16 : 870564 .. 874669 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGATTGGATGACCTTTGGGCGCAGCCTTGCTGCCATGGTTGAAAAAGTGCTCGCAGGTTGTAGGGTATGTGGTTTTTCCACACTACCAATCAATGTCATTAGAGGCTTGCTTGGGAAAGGCTGGTGAAGTCAGTAAAAAGAACTAAGAAACAAGAGCATCCCGAGACTACTCTCCATTGAAAGACCAGACCTTCCTTTCTTTGATGATGCTATGCTAGCTCACTCAGGTTTGGTTACGTGGGAAAGAAGAGACAGGTTGGCTGAGTTTGAACATGGAGAAAATAATGCAGTTTCAATGATCAAAGTCCGAAACTTCCATTCATGTGTCAAACATATATCTGCACCAGAACTCCTAACTTAGTTCTTCAAAAGAAGTACATGTCAATCATCGTTACACTATGTTCAACTTATAGAATTAGAATTAAATTATTTTTTTGACATTCATGCTAGTAGTTGGACCTGTATTGAAACTATGCTCTTTTGTGGCTTTGTGGAACGTAACAACGTTGTTGGAAGATGCGTCTGTTTCTCATTCGAACGCTCATTTAGTGTTACAAAATAAAATTATAATATTTAAAATATATAAGGGCAAAATTGACATAAATGGTAAATATATATACACACACGGTTGTTTGTTTGTTGTTTTAAGATATAGGGTCTGCAGAAAACCGCTATAACCGAGAAACCAAATGAACCATCCAGTTTGTACTGGAAGGAAGAATAACGCCGGTCGGAAGGCCCACTGGAACCGATGGCTCTGATTTTTCCTATCGCATGGTCGTCGACTCTCGTAAGTTCCCTCAATTTCTTCTACTAATTTCTGTTAGACTGTTGAGCAATCATGTATGACAATAAGTTGATTGATATGGATGAGAAAAACTTTTGTTTTCCTCTTTGTTTGGTCCTCATTGGTGCCATGTTTCTGCTCAGCTTTTGGGTTAGTGGAAGAGGATTTTCTAGCTCTTGTTTTTCAGGCATTGGAACAGGAAATGGGATTCATTTAGCTATTTTAATTGTCTTATTCAAATCAATTTCGGTTTTTCTGATGGGTTCTTCCAATTCTAGGATATCAAAAGGTTGCCAAGGGGAAATCTCGTTTCTACAACCTGATTTTAGCTCAGGTACATGCATTATATTGCTTTTACAGAAAATTTTGTGTACGTTTACTATCTGAATACTTATATTTACTTTCACTTGTAATGAAAAAAGCCTGAAACTTAACGAAGATTGATGACAGACAGTAGATAGTAGATGTCCTACAATGTCTAAAATGGTTGCCGATTTTTGTTTTCAAGATATAATTCACATTGTAATTTAGTAGCACAATGACGTGTATTAATCTAGTAAAAAACCAGTATCCTATTTATACATGCAATGAATTCTCGACTGAGTACATATAGGATTATTGTTCTGTTTCAAGAAATTGGAGTTAAACTATGATATAGAACCAGATTGCCCAGCTGCAAATGCTGTAGTCTCTATCCCATTTCCAGTCAAATCGACACTATGATGCTACTATTCTTGTGTCACAAATGTAAAGGCCATGCTTTTCAACAGAAGTGGATCCATTAATAGTTATGTTTGGATATAAGGAAAAAATTATTTAAAGCCAATAAAAATGGTGAGATATTTTCAATTTGATAGTAGTGTGATAAAGCCTCTATTCCTGTGAGATCCCACGTCGGTTGGAGAGGGGAACGAAACATTTCTTATATGGGTGTGGAAACCTCTTCCTAATAAACGTGTTTTAAAATCGTGAGGTTGACGACAATATGTAACAGGCCAAATCGGACAATATCTACTAGCGGTGGGCTTGGACGGTTACAAATGGTATTAGAGCCAGACACCAGGCAGTGTGCCAGCGAGGATATTGGACTCCCAAGGTGGATGGATTGTGAAATCTCACATCGATTGGAAAAGGGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGATGCGTTTTAAAACTGTGAGGCTGACGGCTATATGTACGGGCCAAAGTGGACAATATCTGCTAGCGGTGGGTTTGGGCTGTTACAGTTCCTGACTTCCTTGGATATCCAAGGACATCCAGATCGGTAATTTCCTAGTTCCTCTCACATTGTCTTTAATTGCTTGTGATATGAGTTAAATGTTTTTGTCTGCTGGAAGTTTGGTGCTGATTAAGGGTACCGTATGATTGTCACCTAAGTATCATGAAGGTCTATTGTCTGTGTGATTAATAAAGCTTTCATGAAATACTTGGTTCAATTTTTTCTTCAAGTTCTTTCGTCTTTGGTTTAACTGACTGGAATGCTTCCTAGTTCCTCTATTGAAATCAATGAACATTTATATCTACTATTTGAAATCAGACGAAACGAAGCTGGAAGAGTTTGGCGGTGACATAAAACCTCATATAATGATCTTATAATGTTTGCTTACCTTTGTGATGTTGGTTTTTACTACTGCAGGTTATTATTCACCTATGTGGAGTGGTATACTTGTTTATATTAACATCAAAGAAAGGTACTCTTGATAAACTTGCTATTTCATCTGCCATCACTGGTTTATTTTCGTTGTTTGTCGGAGAACTAGGTCGCTAGTGATACTCTAACCTTTTGCACCTATTTTCATACACATCTTTATATGTTTTAACATTAGTGGTTGATTATTTTCCAATGTACAGGCCGAAGGCACAGCCGTGCAAGCTTCATGAAAGTATATATGATTGCCTCATCTCTTGCACTCCTACTACTTCTTTTTGATGTCTCTCAGGGTAATTACACGTTTGAGGTATGGAAAACTAATCCATTTTCCGCTGTGCTGCTCTAAGAGAGAAATCAAATGGAAAGGTTATCGAGCAAGAGCTTAACTGGAATTGTTATGCATGTTGACTAGTTGAAGAAGCAATAGCAATGGAGACGATAAATTAAATTGGTGGGTAAAAATTTAGATAAGGATCCATCTGGGAGATCGCACAATGGTTGGATAGGAGACCGAAATATTGTTTATAAGAGTTTGGAAACTTCTCTCTAGTAGATGTGTTTTAAAAACCTTGAGCGGAAGCCCGAAAGAAAAAACCTAAAGAAGACAATATCTGCTGGCGATGGACTTGGGTTATTGTAAATGGTATCAGAGCCAGACATTGGGCGATGTACCAGCGAGGAGGCTGAGCCCCGAAGGGGGTGGACACGAGGCTGTATGCCAGTGAGGACGCTGGACCCTGAAGGGTGGTGGATTGTGAGATCCCATATCGGTTGGAGAGGAGAACGAAACATTGTTTATAAAAGTGTGGAAACTTCTTTCTAGTAGACGTATTTTAAAAACCTTGAGGGAAAGCTCGAAAGGGAAAGTCCAAAGAGGACAATATCTTCTAGCTGTGGACTTGGGCTATTTCACCATCTTTGTATTTCCCATTAATGAGCATGCCTTCTTCAAGCTTTTATAGTTGATGAGACTCTATAGATTCATTGTTAGCTTAGCTTTGTTACCCTTGGCATCTATACTTGAAAATGGTGGGAAGCTTCATTTTGATTGGCTGATTGTTTTTATAACTCTATGGCCTTTGATCACAGCTTCCATGTGGTAATGTCTGTTATGAATGGTGCTTTATTCTTCATTCTAACTGAGTTTGGACTCTCATGAACCATTTAGGGTATGGGGGATCTAAGTAATTGGAAGGCGAAAAAGCTCGAACTTTTCGAGATGATCCGCATTTGTCTTGGTGGGTTTCACATTACATAGGTTATCTTCATTGTTTTCATATTCATACGTAAGAACTAAGATTGGAATTCTGATATGTGTTCATACAGGGGCTCTGCCTCAGATATTTGCAACCAGCACAGTGATTTCCCTCGTCGGTAACATGTCTCTTCCAAAACGTGCCTCTTAATTATTGTGTACCAAACTGTTGTCCTTCTAACGACCAGGAAAGATCTCTCTACTGTTTCCTTCTGGATTCTGAATCCAAAAATCATGCACAAGAAGGCTTGGATTTGTCTTGTCTCTCTAAATCATTATTACAGAATGGTTTCACTTGGATGTTGAAATTGGTGGAGTAAAATATATAGGGTATAAACAAAATTTTCTGGAATTTTCTTTTTTGATGGG

mRNA sequence

ATGGCAGATTGGATGACCTTTGGGCGCAGCCTTGCTGCCATGGTTGAAAAAGTGCTCGCAGGATATCAAAAGGTTGCCAAGGGGAAATCTCGTTTCTACAACCTGATTTTAGCTCAGGTTATTATTCACCTATGTGGAGTGGTATACTTGTTTATATTAACATCAAAGAAAGGTACTCTTGATAAACTTGCTATTTCATCTGCCATCACTGGTTTATTTTCGTTGTTTGTCGGAGAACTAGGCCGAAGGCACAGCCGTGCAAGCTTCATGAAAGTATATATGATTGCCTCATCTCTTGCACTCCTACTACTTCTTTTTGATGTCTCTCAGGGTAATTACACGTTTGAGGGTATGGGGGATCTAAGTAATTGGAAGGCGAAAAAGCTCGAACTTTTCGAGATGATCCGCATTTGTCTTGGGGCTCTGCCTCAGATATTTGCAACCAGCACAGTGATTTCCCTCGTCGGTAACATGTCTCTTCCAAAACGTGCCTCTTAATTATTGTGTACCAAACTGTTGTCCTTCTAACGACCAGGAAAGATCTCTCTACTGTTTCCTTCTGGATTCTGAATCCAAAAATCATGCACAAGAAGGCTTGGATTTGTCTTGTCTCTCTAAATCATTATTACAGAATGGTTTCACTTGGATGTTGAAATTGGTGGAGTAAAATATATAGGGTATAAACAAAATTTTCTGGAATTTTCTTTTTTGATGGG

Coding sequence (CDS)

ATGGCAGATTGGATGACCTTTGGGCGCAGCCTTGCTGCCATGGTTGAAAAAGTGCTCGCAGGATATCAAAAGGTTGCCAAGGGGAAATCTCGTTTCTACAACCTGATTTTAGCTCAGGTTATTATTCACCTATGTGGAGTGGTATACTTGTTTATATTAACATCAAAGAAAGGTACTCTTGATAAACTTGCTATTTCATCTGCCATCACTGGTTTATTTTCGTTGTTTGTCGGAGAACTAGGCCGAAGGCACAGCCGTGCAAGCTTCATGAAAGTATATATGATTGCCTCATCTCTTGCACTCCTACTACTTCTTTTTGATGTCTCTCAGGGTAATTACACGTTTGAGGGTATGGGGGATCTAAGTAATTGGAAGGCGAAAAAGCTCGAACTTTTCGAGATGATCCGCATTTGTCTTGGGGCTCTGCCTCAGATATTTGCAACCAGCACAGTGATTTCCCTCGTCGGTAACATGTCTCTTCCAAAACGTGCCTCTTAA
Homology
[Close]
BLAST of CmoCh16G001970 vs. TrEMBL
Match: A0A0A0L667_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175730 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.8e-56
Identity = 119/144 (82.64%), Postives = 130/144 (90.28%), Query Frame = 1 

Query: 22  YQKVAKGKSRFYNLILAQVIIHLCGVVYLFILTSKKGTLDKLAISSAITGLFSLFVGELG 81
           YQKVAKGKSRF++LILAQV+I LCGV YLF+LTSKK T DKLAISSAITG FSLF+GELG
Sbjct: 29  YQKVAKGKSRFHSLILAQVVIQLCGVAYLFLLTSKKETPDKLAISSAITGFFSLFIGELG 88

Query: 82  RRHSRASFMKVYMIASSLALLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGA 141
           +RHSR SF+KVY IASSL+LLLLL DVSQGNYTFE +GDLSNW+AK+LELFEMIRI LGA
Sbjct: 89  QRHSRTSFLKVYAIASSLSLLLLLVDVSQGNYTFESIGDLSNWQAKQLELFEMIRISLGA 148

Query: 142 LPQIFATSTVISLVGNMSLPKRAS 166
           L QIFA STVISLV NMS PKRAS
Sbjct: 149 LLQIFAISTVISLVSNMSPPKRAS 172

[Close]
BLAST of CmoCh16G001970 vs. TrEMBL
Match: B9R9R1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1500150 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-29
Identity = 73/144 (50.69%), Postives = 99/144 (68.75%), Query Frame = 1 

Query: 22  YQKVAKGKSRFYNLILAQVIIHLCGVVYLFILTSKKGTLDKLAISSAITGLFSLFVGELG 81
           Y KVAKGKSR   LIL Q +I L G++ + +  S +   ++LAI S++ G FSL  GELG
Sbjct: 27  YTKVAKGKSRLCTLILTQAVIQLIGLLCIVLSISNEKGANRLAILSSVIGFFSLLTGELG 86

Query: 82  RRHSRASFMKVYMIASSLALLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGA 141
           RR SR SF++VY+I S +ALLL +F  +  N T E + +LS+W+  K EL E + + LG+
Sbjct: 87  RRRSRVSFLRVYIITSFIALLLSIFCATASNSTLEVIQNLSHWEKNKFELVETLLLILGS 146

Query: 142 LPQIFATSTVISLVGNMSLPKRAS 166
           L Q+F  STVISL+GNMS PK+AS
Sbjct: 147 LLQLFTISTVISLIGNMSPPKKAS 170

[Close]
BLAST of CmoCh16G001970 vs. TrEMBL
Match: M5XDW6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012396mg PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.1e-27
Identity = 75/144 (52.08%), Postives = 92/144 (63.89%), Query Frame = 1 

Query: 22  YQKVAKGKSRFYNLILAQVIIHLCGVVYLFILTSKKGTLDKLAISSAITGLFSLFVGELG 81
           YQKVAKGKSR   LIL Q +I L GV+  F+ TS     + +AISS   G  SL +GELG
Sbjct: 29  YQKVAKGKSRLSALILTQAVIQLIGVL-AFLFTSNGEGPNVIAISSFAIGSISLIIGELG 88

Query: 82  RRHSRASFMKVYMIASSLALLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGA 141
           RR SR S +KVY++ASS+ +LL +  V+ GN T E   + SNW+ KK EL E  R  +  
Sbjct: 89  RRRSRVSLLKVYIVASSIGILLSIACVATGNLTLEVFQNPSNWETKKFELLEATRTAIAF 148

Query: 142 LPQIFATSTVISLVGNMSLPKRAS 166
           L QIF  ST  SL+ NMS PKRAS
Sbjct: 149 LVQIFTVSTTASLISNMSPPKRAS 171

[Close]
BLAST of CmoCh16G001970 vs. TrEMBL
Match: V4U6R7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006041mg PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.6e-26
Identity = 69/144 (47.92%), Postives = 97/144 (67.36%), Query Frame = 1 

Query: 22  YQKVAKGKSRFYNLILAQVIIHLCGVVYLFILTSKKGTLDKLAISSAITGLFSLFVGELG 81
           Y KVA+GKSR   LI AQ  I L G+++ F+L SK+   + L++SSA  GL SL +GELG
Sbjct: 30  YTKVARGKSRLSKLIFAQAAIQLIGLLFTFVLNSKEEGPNPLSLSSASLGLVSLIIGELG 89

Query: 82  RRHSRASFMKVYMIASSLALLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGA 141
           ++ SR S ++V ++ASS+A+LL +F V + N   E + + S W+ KK EL E  R+ +G+
Sbjct: 90  QKRSRVSLLRVCVVASSIAVLLSVFSVVRTNSILEVINNPSIWETKKFELLETARVLIGS 149

Query: 142 LPQIFATSTVISLVGNMSLPKRAS 166
             QIF  ST ISLV NMS PK++S
Sbjct: 150 SVQIFLVSTTISLVHNMSPPKKSS 173

[Close]
BLAST of CmoCh16G001970 vs. TrEMBL
Match: A0A067JQX3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26241 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.9e-25
Identity = 69/144 (47.92%), Postives = 91/144 (63.19%), Query Frame = 1 

Query: 22  YQKVAKGKSRFYNLILAQVIIHLCGVVYLFILTSKKGTLDKLAISSAITGLFSLFVGELG 81
           Y KVAKGKSR   LI  Q +I L G++   +   K+   D LAISS++ GL SL +GE G
Sbjct: 27  YTKVAKGKSRLSALISTQAVIQLIGLLNAVLSIPKEKGPDTLAISSSVIGLISLLIGEFG 86

Query: 82  RRHSRASFMKVYMIASSLALLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGA 141
           RR SR SF++VY+I S++A LL LF     N   E +  L++ + KK EL   + + LG 
Sbjct: 87  RRRSRVSFLRVYIITSTIATLLSLFCAVSSNSMLEVIWKLNDLERKKFELINSLLLLLGL 146

Query: 142 LPQIFATSTVISLVGNMSLPKRAS 166
             QIF  STV+SL+GNMS PK+AS
Sbjct: 147 FVQIFTISTVVSLIGNMSPPKKAS 170

[Close]
BLAST of CmoCh16G001970 vs. TAIR10
Match: AT5G51510.1 (AT5G51510.1 unknown protein)

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-17
Identity = 55/144 (38.19%), Postives = 80/144 (55.56%), Query Frame = 1 

Query: 22  YQKVAKGKSRFYNLILAQVIIHLCGVVYLFILTSKKGTLDKLAISSAITGLFSLFVGELG 81
           Y KV K K+R   LI  Q  I++ G+   F+ T+KK   + LAI++A+ GL    +GELG
Sbjct: 29  YTKVTKEKARLRPLIFVQAAIYVIGLSCAFLTTTKKDEKNTLAIAAAVAGLVCSLIGELG 88

Query: 82  RRHSRASFMKVYMIASSLALLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGA 141
            R SR + +++Y  AS++ ++L +F   +   T E     S+    KLEL   I   LGA
Sbjct: 89  CRRSRVNLLRLYTAASTIVMVLSVFCAVRSRLTMEERN--SSGTTAKLELAGFICAQLGA 148

Query: 142 LPQIFATSTVISLVGNMSLPKRAS 166
           + QI A     SLV NMS P +A+
Sbjct: 149 VVQILAIIVTGSLVNNMSPPTKAA 170

[Close]
BLAST of CmoCh16G001970 vs. NCBI nr
Match: gi|659077236|ref|XP_008439098.1| (PREDICTED: uncharacterized protein LOC103483988 [Cucumis melo])

HSP 1 Score: 228.4 bits (581), Expect = 9.1e-57
Identity = 119/144 (82.64%), Postives = 130/144 (90.28%), Query Frame = 1 

Query: 22  YQKVAKGKSRFYNLILAQVIIHLCGVVYLFILTSKKGTLDKLAISSAITGLFSLFVGELG 81
           YQKVAKGKSRF+ LILAQ++I LCGV YLFILTSKK T DKLAISSAITG FSLF+GELG
Sbjct: 29  YQKVAKGKSRFHTLILAQIVIQLCGVAYLFILTSKKETPDKLAISSAITGFFSLFIGELG 88

Query: 82  RRHSRASFMKVYMIASSLALLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGA 141
           +RHSR SF+KVY+IASSL+LLLLL DVSQGNYTFE +GDLSNW+ K+LELFEMIRI LGA
Sbjct: 89  QRHSRTSFLKVYVIASSLSLLLLLVDVSQGNYTFESIGDLSNWQTKQLELFEMIRISLGA 148

Query: 142 LPQIFATSTVISLVGNMSLPKRAS 166
           L QIFA STVISLVGNMS PKRAS
Sbjct: 149 LLQIFAISTVISLVGNMSPPKRAS 172

[Close]
BLAST of CmoCh16G001970 vs. NCBI nr
Match: gi|449460816|ref|XP_004148140.1| (PREDICTED: uncharacterized protein LOC101211693 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 2.6e-56
Identity = 119/144 (82.64%), Postives = 130/144 (90.28%), Query Frame = 1 

Query: 22  YQKVAKGKSRFYNLILAQVIIHLCGVVYLFILTSKKGTLDKLAISSAITGLFSLFVGELG 81
           YQKVAKGKSRF++LILAQV+I LCGV YLF+LTSKK T DKLAISSAITG FSLF+GELG
Sbjct: 29  YQKVAKGKSRFHSLILAQVVIQLCGVAYLFLLTSKKETPDKLAISSAITGFFSLFIGELG 88

Query: 82  RRHSRASFMKVYMIASSLALLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGA 141
           +RHSR SF+KVY IASSL+LLLLL DVSQGNYTFE +GDLSNW+AK+LELFEMIRI LGA
Sbjct: 89  QRHSRTSFLKVYAIASSLSLLLLLVDVSQGNYTFESIGDLSNWQAKQLELFEMIRISLGA 148

Query: 142 LPQIFATSTVISLVGNMSLPKRAS 166
           L QIFA STVISLV NMS PKRAS
Sbjct: 149 LLQIFAISTVISLVSNMSPPKRAS 172

[Close]
BLAST of CmoCh16G001970 vs. NCBI nr
Match: gi|694389744|ref|XP_009370480.1| (PREDICTED: uncharacterized protein LOC103959836 [Pyrus x bretschneideri])

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 78/144 (54.17%), Postives = 98/144 (68.06%), Query Frame = 1 

Query: 22  YQKVAKGKSRFYNLILAQVIIHLCGVVYLFILTSKKGTLDKLAISSAITGLFSLFVGELG 81
           YQKVAKGKSR Y+LIL Q +IHL GV+Y F+ TS     + +AISS   G  SL +GELG
Sbjct: 29  YQKVAKGKSRLYSLILTQAVIHLTGVLYAFLFTSDGEGPNVIAISSVAIGSISLIIGELG 88

Query: 82  RRHSRASFMKVYMIASSLALLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGA 141
           RR SR S +KVYM+AS + +LL +  V++G+ T   + + SNW+ KK EL E  R  +  
Sbjct: 89  RRRSRVSLLKVYMVASFIGILLSIACVAKGSLTLAVLQNSSNWETKKFELVEATRTVIAF 148

Query: 142 LPQIFATSTVISLVGNMSLPKRAS 166
           L QIFA ST  SL+GNMS PKRAS
Sbjct: 149 LVQIFAISTTTSLIGNMSPPKRAS 172

[Close]
BLAST of CmoCh16G001970 vs. NCBI nr
Match: gi|657969443|ref|XP_008376440.1| (PREDICTED: uncharacterized protein LOC103439644 [Malus domestica])

HSP 1 Score: 144.1 bits (362), Expect = 2.2e-31
Identity = 78/144 (54.17%), Postives = 98/144 (68.06%), Query Frame = 1 

Query: 22  YQKVAKGKSRFYNLILAQVIIHLCGVVYLFILTSKKGTLDKLAISSAITGLFSLFVGELG 81
           YQKVAKGKSR Y+LIL Q +I L GV+Y F+ TS     + +AISS   G  SL +GELG
Sbjct: 29  YQKVAKGKSRLYSLILTQAVIQLTGVLYAFLFTSDGEGPNVIAISSVAIGSISLIIGELG 88

Query: 82  RRHSRASFMKVYMIASSLALLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGA 141
           RR SR S +KVYM+ASS+ +LL +  V++G+ T   + + SNW+ KK EL E  R  +  
Sbjct: 89  RRRSRVSLLKVYMVASSIGILLSIACVAKGSLTLAVLQNSSNWETKKFELVEATRTVIAF 148

Query: 142 LPQIFATSTVISLVGNMSLPKRAS 166
           L QIFA ST  SL+GNMS PKRAS
Sbjct: 149 LVQIFAISTTTSLIGNMSPPKRAS 172

[Close]
BLAST of CmoCh16G001970 vs. NCBI nr
Match: gi|694395094|ref|XP_009372894.1| (PREDICTED: uncharacterized protein LOC103961965 [Pyrus x bretschneideri])

HSP 1 Score: 144.1 bits (362), Expect = 2.2e-31
Identity = 78/144 (54.17%), Postives = 98/144 (68.06%), Query Frame = 1 

Query: 22  YQKVAKGKSRFYNLILAQVIIHLCGVVYLFILTSKKGTLDKLAISSAITGLFSLFVGELG 81
           YQKVAKGKSR Y+LIL Q +I L GV+Y F+ TS     + +AISS   G  SL +GELG
Sbjct: 29  YQKVAKGKSRLYSLILTQAVIQLTGVLYAFLFTSDGEGPNVIAISSVAIGSISLIIGELG 88

Query: 82  RRHSRASFMKVYMIASSLALLLLLFDVSQGNYTFEGMGDLSNWKAKKLELFEMIRICLGA 141
           RR SR S +KVYM+ASS+ +LL +  V++G+ T   + + SNW+ KK EL E  R  +  
Sbjct: 89  RRRSRVSLLKVYMVASSIGILLSIACVAKGSLTLAVLQNSSNWETKKFELVEATRTVIAF 148

Query: 142 LPQIFATSTVISLVGNMSLPKRAS 166
           L QIFA ST  SL+GNMS PKRAS
Sbjct: 149 LVQIFAISTTTSLIGNMSPPKRAS 172

The following BLAST results are available for this feature:
BLAST of CmoCh16G001970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G001970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L667_CUCSA1.8e-5682.64Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175730 PE=4 SV=1[more]
B9R9R1_RICCO2.5e-2950.69Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1500150 PE=4 SV=1[more]
M5XDW6_PRUPE3.1e-2752.08Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012396mg PE=4 SV=1[more]
V4U6R7_9ROSI2.6e-2647.92Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006041mg PE=4 SV=1[more]
A0A067JQX3_JATCU4.9e-2547.92Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26241 PE=4 SV=1[more]
BLAST of CmoCh16G001970 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G51510.12.6e-1738.19 unknown protein[more]
BLAST of CmoCh16G001970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077236|ref|XP_008439098.1|9.1e-5782.64PREDICTED: uncharacterized protein LOC103483988 [Cucumis melo][more]
gi|449460816|ref|XP_004148140.1|2.6e-5682.64PREDICTED: uncharacterized protein LOC101211693 [Cucumis sativus][more]
gi|694389744|ref|XP_009370480.1|1.3e-3154.17PREDICTED: uncharacterized protein LOC103959836 [Pyrus x bretschneideri][more]
gi|657969443|ref|XP_008376440.1|2.2e-3154.17PREDICTED: uncharacterized protein LOC103439644 [Malus domestica][more]
gi|694395094|ref|XP_009372894.1|2.2e-3154.17PREDICTED: uncharacterized protein LOC103961965 [Pyrus x bretschneideri][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007029 endoplasmic reticulum organization
biological_process GO:0008150 biological_process
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G001970.1CmoCh16G001970.1mRNA