Cp4.1LG13g05200 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g05200
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBasic helix-loop-helix transcription factor
LocationCp4.1LG13 : 5598091 .. 5599777 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCCTACAAATAGGGTCTAGAAAGTAGGAGGGTTGTGTATGATTTGAGTACATTTAAAGCACTCTTTCATTGTGTGTCAGTGTCAATGGCACTCGCAAATTCAGCTGAACAAGAGCAGCAAATATCTGACTCTCTCATCAACTTCAAGTGTGGGATTGGCAACAACGAGCCTTTGCTGAGCTTTGAGCCACAAGGGGTTTGTCAATTAGACACTCACAATTGGGATCAATTGCGTGCCATGGAGGATCCCAGCCCTCCAAGACATCACGGAGATCATAGCCCTCTTTATGGGTGCCTTTCTTATGCCATTCAAGACCCTGAAGCAGCTCAGGACATAACTGGAAATCACAAGCGAGCCCATACGACGGTATTAAATCGTTCGTCTTCATTGCTAAATTATAAGTTTCGTCCCTAAACTCGTATTAGATTGATCGATTGATTGACAGGGAAATAGCAGTGAGGGTGTTTGTAAGAAGCAATGTAAATCATCAACAGCCAAGGATCCACAGAGCATTGCAGCCAAGGTTTGGTCTTGTTTTGTTTGAACAACGTTGGCTAAGAAAATGTCTGTTTTATTGTTTGTTTTGTTACTTAGAATCGACGAGAGAGGATTAGTGAGAGGCTGAAGATACTCCAAGAATTGGTTCCTAATGGCTCCAAGGTGCTTATTGCTATCTAAATTAAGAAAAGCTTTGAACTTTTATGGAATTTTGGGCCATTTTTAACTTCATTTTGCAGGTTGATTTGGTAACCATGTTGGAGAAAGCCATTAGTTATGTCAAGTTTCTTCAACGTGTCAAGGTACGAATATAAGTTACGAATAGAAATGTATGTTTAAATTAGAGAATCCGGACTTGTAGGGACCTATTGAAGTAGAGAGAGATTTCTCCCCATTAGTTAAACGAGGCTAAAGATAGAGATTATATTCTCTACCTCCAACCCGCTCAAATCTATTAGAAACTACAAACCTCCACAATGGTATGATATGGTCTATTTTGAGTATAAGCTCTCATGGTTTCTTTTTAGGCTTCCACCTCGTACTAATGGAGATGTATTCCTCACTTGCAAACCCATGATCATTCTTTGAATTAGTCAATGTGGGACTCCCTCCCAACAATCCTCCCCTCGAACCTGAGGCCTATGGGGCCCTCGAACAGCCTCCCTATAATCGAACAAAGGGCTCAACTTCTTCTCTGGAGATATCAAACAAAGTACAACTACACCTTCGAGACTAGTAATTTCTTTGTTCGACATTTGAGGATTCAATTAGCATACCTAAGTTAACGACATGACTTTAGATACCATGTTAGAGATGCATTTCTTACTTATATAGACTCGTGATCATTCTCTTAATTAGTTAATGTGGAACTCCCTCCCAACAATTCTCAAACACGTCTCTATGCCCTCTTTATCGTTCTAGTTAAAATTTTGAATTTCAGATCCTAGCGGCCGACGAATTTTGGCCCGTTCAAGGAGGGAAAGCTCCAGATATTTCACAAGTTAGGGAAGCCATTGATGCCATTCTTTCATCACAAAGAGAAAGAAGCTGAAGCTCAAGTAGTCAAAAGTGATGGTGTTTTTGGCCTCCGCGTAGACCGACATTACTCAAATGAGCTAGCAACTGAAATGTATGCATATCAGAATGCACGCCCAATGCCTTATCAGGGCCAATGTGCTTTAATCTTT

mRNA sequence

CCCCCTACAAATAGGGTCTAGAAAGTAGGAGGGTTGTGTATGATTTGAGTACATTTAAAGCACTCTTTCATTGTGTGTCAGTGTCAATGGCACTCGCAAATTCAGCTGAACAAGAGCAGCAAATATCTGACTCTCTCATCAACTTCAAGTGTGGGATTGGCAACAACGAGCCTTTGCTGAGCTTTGAGCCACAAGGGGTTTGTCAATTAGACACTCACAATTGGGATCAATTGCGTGCCATGGAGGATCCCAGCCCTCCAAGACATCACGGAGATCATAGCCCTCTTTATGGGTGCCTTTCTTATGCCATTCAAGACCCTGAAGCAGCTCAGGACATAACTGGAAATCACAAGCGAGCCCATACGACGGGAAATAGCAGTGAGGGTGTTTGTAAGAAGCAATGTAAATCATCAACAGCCAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAGAGGATTAGTGAGAGGCTGAAGATACTCCAAGAATTGGTTCCTAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAGAAAGCCATTAGTTATGTCAAGTTTCTTCAACGTGTCAAGGAGGGAAAGCTCCAGATATTTCACAAGTTAGGGAAGCCATTGATGCCATTCTTTCATCACAAAGAGAAAGAAGCTGAAGCTCAAGTAGTCAAAAGTGATGGTGTTTTTGGCCTCCGCGTAGACCGACATTACTCAAATGAGCTAGCAACTGAAATGTATGCATATCAGAATGCACGCCCAATGCCTTATCAGGGCCAATGTGCTTTAATCTTT

Coding sequence (CDS)

ATGGCACTCGCAAATTCAGCTGAACAAGAGCAGCAAATATCTGACTCTCTCATCAACTTCAAGTGTGGGATTGGCAACAACGAGCCTTTGCTGAGCTTTGAGCCACAAGGGGTTTGTCAATTAGACACTCACAATTGGGATCAATTGCGTGCCATGGAGGATCCCAGCCCTCCAAGACATCACGGAGATCATAGCCCTCTTTATGGGTGCCTTTCTTATGCCATTCAAGACCCTGAAGCAGCTCAGGACATAACTGGAAATCACAAGCGAGCCCATACGACGGGAAATAGCAGTGAGGGTGTTTGTAAGAAGCAATGTAAATCATCAACAGCCAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAGAGGATTAGTGAGAGGCTGAAGATACTCCAAGAATTGGTTCCTAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAGAAAGCCATTAGTTATGTCAAGTTTCTTCAACGTGTCAAGGAGGGAAAGCTCCAGATATTTCACAAGTTAGGGAAGCCATTGATGCCATTCTTTCATCACAAAGAGAAAGAAGCTGAAGCTCAAGTAGTCAAAAGTGATGGTGTTTTTGGCCTCCGCGTAGACCGACATTACTCAAATGAGCTAGCAACTGAAATGTATGCATATCAGAATGCACGCCCAATGCCTTATCAGGGCCAATGTGCTTTAATCTTT

Protein sequence

MALANSAEQEQQISDSLINFKCGIGNNEPLLSFEPQGVCQLDTHNWDQLRAMEDPSPPRHHGDHSPLYGCLSYAIQDPEAAQDITGNHKRAHTTGNSSEGVCKKQCKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQRVKEGKLQIFHKLGKPLMPFFHHKEKEAEAQVVKSDGVFGLRVDRHYSNELATEMYAYQNARPMPYQGQCALIF
Homology
[Close]
BLAST of Cp4.1LG13g05200 vs. Swiss-Prot
Match: BH083_ARATH (Transcription factor bHLH83 OS=Arabidopsis thaliana GN=BHLH83 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-17
Identity = 57/90 (63.33%), Postives = 65/90 (72.22%), Query Frame = 1 

Query: 79  EAAQDITGNHKRAHTTGNS------SEGVCKKQCKSSTA--KDPQSIAAKNRRERISERL 138
           E+    +  +KR+HT  ++      S GV  K     T   KDPQS+AAKNRRERISERL
Sbjct: 162 ESLSPKSAGNKRSHTGESTQPSKKLSSGVTGKTKPKPTTSPKDPQSLAAKNRRERISERL 221

Query: 139 KILQELVPNGSKVDLVTMLEKAISYVKFLQ 161
           KILQELVPNG+KVDLVTMLEKAISYVKFLQ
Sbjct: 222 KILQELVPNGTKVDLVTMLEKAISYVKFLQ 251

[Close]
BLAST of Cp4.1LG13g05200 vs. Swiss-Prot
Match: BH086_ARATH (Putative transcription factor bHLH086 OS=Arabidopsis thaliana GN=BHLH86 PE=3 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-16
Identity = 61/115 (53.04%), Postives = 76/115 (66.09%), Query Frame = 1 

Query: 57  PPRHHGDHSPLYG---CLSYAIQDPEAAQDITGNHKRAHTTGNS------SEGVCKK-QC 116
           P  +HG+   LY     ++   +    +  + GN KR  T  N+      S G   K + 
Sbjct: 144 PATNHGNGDWLYSGSTIVNIGSRHESTSPKLAGN-KRPFTGENTQLSKKPSSGTNGKIKP 203

Query: 117 KSSTA-KDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ 161
           K++T+ KDPQS+AAKNRRERISERLK+LQELVPNG+KVDLVTMLEKAI YVKFLQ
Sbjct: 204 KATTSPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQ 257

[Close]
BLAST of Cp4.1LG13g05200 vs. Swiss-Prot
Match: BH140_ARATH (Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-12
Identity = 50/137 (36.50%), Postives = 78/137 (56.93%), Query Frame = 1 

Query: 88  HKRAHTTGNSSEGVCKKQCKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVT 147
           H+    TGN+     + +  S+ + DPQS+AA++RR RIS+R KILQ +VP G+K+D V+
Sbjct: 25  HRHKSETGNTK----RSRSTSTLSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVS 84

Query: 148 MLEKAISYVKFLQRVKEGKLQIFHKLGKPLMPFFHHKEKEAEAQVVKSDGVFGLRVDRHY 207
           ML++AISYVKFL      K QI++   + ++ F +  E  +        G FG ++   Y
Sbjct: 85  MLDEAISYVKFL------KAQIWYH--QNMLLFINDHETTSSCTYSPGAGEFGPKL-FGY 144

Query: 208 SNELATEMYAYQNARPM 225
            ++ A  M  Y    P+
Sbjct: 145 DDDYAPIMDTYSQGVPL 148

[Close]
BLAST of Cp4.1LG13g05200 vs. Swiss-Prot
Match: BH084_ARATH (Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.3e-12
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1 

Query: 103 KKQCKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ 161
           K +     A DPQS+ A+ RRERI+ERL+ILQ LVPNG+KVD+ TMLE+A+ YVKFLQ
Sbjct: 236 KTRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQ 293

[Close]
BLAST of Cp4.1LG13g05200 vs. Swiss-Prot
Match: BH054_ARATH (Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.3e-12
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1 

Query: 103 KKQCKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ 161
           K +    TA DPQS+ A+ RRE+I+ERLK LQ LVPNG+KVD+ TMLE+A+ YVKFLQ
Sbjct: 166 KTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQ 223

[Close]
BLAST of Cp4.1LG13g05200 vs. TrEMBL
Match: A0A0A0KN55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G420280 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.4e-41
Identity = 113/187 (60.43%), Postives = 124/187 (66.31%), Query Frame = 1 

Query: 11  QQISDSLINFKCGIGNNEPLLSFEPQGVCQLD-THNWD-QLRAMEDP------------S 70
           QQ   SLINF   + NNE LLSFE QG+CQLD T+NWD Q R MEDP            S
Sbjct: 52  QQQQQSLINFGHKM-NNESLLSFEAQGICQLDLTYNWDDQQRVMEDPNCFQTATNHNNYS 111

Query: 71  PPRHH------GDHSPLYGCL--------SYAIQDPEAAQDITGNHKRAHTTGNSSEGVC 130
           P + H      GD+  +Y  L        S +IQ+ E  Q+I  NHKR+HTTG SS  VC
Sbjct: 112 PSKDHHHHNKNGDNGSVYEWLYSESTTDFSDSIQEAEGTQEIVPNHKRSHTTGESSGSVC 171

Query: 131 KKQC---------KSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAI 161
           KKQC         KS+TAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAI
Sbjct: 172 KKQCTAAPKKQKPKSATAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAI 231

[Close]
BLAST of Cp4.1LG13g05200 vs. TrEMBL
Match: B9T2K1_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_0285440 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.3e-20
Identity = 81/160 (50.62%), Postives = 97/160 (60.62%), Query Frame = 1 

Query: 18  INFKCGIGNNE--PLLSFEPQGV----CQLDTHNWDQLRAMEDPSPPRHHGDHSPLYGCL 77
           ++F C    N+  P  S +P+ V    C     N++ +   E   P    GD     G +
Sbjct: 130 VDFNCNYQWNQMNPKSSADPRLVENINCFHTASNFNSIDNSEKEDP----GDWLYSEGTI 189

Query: 78  --SYAIQDPEAAQDITGNHKRAHTTGNSSEGVCKKQCKSST---------AKDPQSIAAK 137
              ++IQ+P   QD    HKR H  G S++ V KKQC S+T         +KDPQSIAAK
Sbjct: 190 ITDHSIQEP-GTQD-ANFHKRPHM-GESTQAV-KKQCNSATKKQKPKTSPSKDPQSIAAK 249

Query: 138 NRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ 161
           NRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ
Sbjct: 250 NRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ 281

[Close]
BLAST of Cp4.1LG13g05200 vs. TrEMBL
Match: A0A0D2R023_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G064400 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 87/180 (48.33%), Postives = 96/180 (53.33%), Query Frame = 1 

Query: 16  SLINFKCG------IGNNEPLLSFEP-----QGVCQLDTHNWDQLRAMEDPSPPRHHGDH 75
           SLINFK         G N  LLSFE      Q    L T  +    +M D   PR   D 
Sbjct: 38  SLINFKDSGYDNFIRGTNGSLLSFEQNEKGRQHTTCLRTSGYKHGHSMVDQWDPRAVEDF 97

Query: 76  SPLYGCL--------------SYAIQDPEA-AQDITGNHKRAHTTGNSSEGVCKKQC--- 135
           S                    S +IQDP + A D+    KR H  G++     KKQC   
Sbjct: 98  SCFETASNGDWLYYDEAVFADSSSIQDPGSPAADL----KRPHVGGSNQ--ALKKQCTNE 157

Query: 136 ------KSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ 161
                 KS  +K+PQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ
Sbjct: 158 TKKGKTKSEPSKEPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ 211

[Close]
BLAST of Cp4.1LG13g05200 vs. TrEMBL
Match: M5WZF1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025775mg PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 89/210 (42.38%), Postives = 106/210 (50.48%), Query Frame = 1 

Query: 13  ISDSLINFKCG-----IGNNEPLLSFEPQGV---------------CQLDTHN----WDQ 72
           ++ S+INFK         N+E LLSFE                   C+ D H+    W+ 
Sbjct: 1   VAHSVINFKNSGYNSFFQNSESLLSFEKNSKQNILKTRNDKDEHFNCEDDLHHGNYQWNH 60

Query: 73  LRAMEDP----------------SPPR----HHGDHSPLYGCL-------SYAIQDPEAA 132
             ++ DP                S P      HGD +  YG L       +   Q+PE+ 
Sbjct: 61  TASVSDPRLSGDFNCFQTASNYSSMPNTSEDDHGDEA--YGWLYSEATVVADGFQEPESQ 120

Query: 133 QDITGNHKRAHTTGNSSEGVCKKQC-----------KSSTAKDPQSIAAKNRRERISERL 161
           +   G HKR H  G + + + KKQC            SS  KDPQSIAAKNRRERISERL
Sbjct: 121 E---GFHKRPHA-GEAMQPL-KKQCTNSGTKKPKPKSSSPTKDPQSIAAKNRRERISERL 180

[Close]
BLAST of Cp4.1LG13g05200 vs. TrEMBL
Match: A0A103Y591_CYNCS (Myc-type, basic helix-loop-helix (BHLH) domain-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_018933 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 83/203 (40.89%), Postives = 106/203 (52.22%), Query Frame = 1 

Query: 5   NSAEQEQQISD--SLINFKCGIGNNEPL---------LSFE-------------PQGVCQ 64
           N  +Q+QQ  +  S+I+FK G  +N  +         LSFE             P  +  
Sbjct: 64  NPHQQQQQPEEGHSVISFKPGYYDNNFMQGGSKGSCFLSFEEINDEQPYSSTLSPDQLMN 123

Query: 65  LDTHNWDQLRAMEDPS----------PPRHHGDHSPLYGCLSYAIQDPEAAQDITGN-HK 124
           L + ++D  R +E+ +              H +    +   + +  D  A QD   + HK
Sbjct: 124 LGSGSFDSFRLLENMNCIQSGGTTTIKENSHNEELESFSWPNPSSNDHLATQDHQSSFHK 183

Query: 125 RAHTTGNSSEGVCKKQC------------KSSTAKDPQSIAAKNRRERISERLKILQELV 161
           R H+    SE   KKQC            KS+  KDPQSIAAKNRRERISERLK+LQ+LV
Sbjct: 184 RTHS--GESEQAFKKQCNANSIATKKTKQKSTQPKDPQSIAAKNRRERISERLKVLQDLV 243

[Close]
BLAST of Cp4.1LG13g05200 vs. TAIR10
Match: AT1G66470.1 (AT1G66470.1 ROOT HAIR DEFECTIVE6)

HSP 1 Score: 91.7 bits (226), Expect = 6.6e-19
Identity = 57/90 (63.33%), Postives = 65/90 (72.22%), Query Frame = 1 

Query: 79  EAAQDITGNHKRAHTTGNS------SEGVCKKQCKSSTA--KDPQSIAAKNRRERISERL 138
           E+    +  +KR+HT  ++      S GV  K     T   KDPQS+AAKNRRERISERL
Sbjct: 162 ESLSPKSAGNKRSHTGESTQPSKKLSSGVTGKTKPKPTTSPKDPQSLAAKNRRERISERL 221

Query: 139 KILQELVPNGSKVDLVTMLEKAISYVKFLQ 161
           KILQELVPNG+KVDLVTMLEKAISYVKFLQ
Sbjct: 222 KILQELVPNGTKVDLVTMLEKAISYVKFLQ 251

[Close]
BLAST of Cp4.1LG13g05200 vs. TAIR10
Match: AT5G37800.1 (AT5G37800.1 RHD SIX-LIKE 1)

HSP 1 Score: 88.2 bits (217), Expect = 7.3e-18
Identity = 61/115 (53.04%), Postives = 76/115 (66.09%), Query Frame = 1 

Query: 57  PPRHHGDHSPLYG---CLSYAIQDPEAAQDITGNHKRAHTTGNS------SEGVCKK-QC 116
           P  +HG+   LY     ++   +    +  + GN KR  T  N+      S G   K + 
Sbjct: 144 PATNHGNGDWLYSGSTIVNIGSRHESTSPKLAGN-KRPFTGENTQLSKKPSSGTNGKIKP 203

Query: 117 KSSTA-KDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ 161
           K++T+ KDPQS+AAKNRRERISERLK+LQELVPNG+KVDLVTMLEKAI YVKFLQ
Sbjct: 204 KATTSPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQ 257

[Close]
BLAST of Cp4.1LG13g05200 vs. TAIR10
Match: AT5G01310.1 (AT5G01310.1 APRATAXIN-like)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-13
Identity = 50/137 (36.50%), Postives = 78/137 (56.93%), Query Frame = 1 

Query: 88  HKRAHTTGNSSEGVCKKQCKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVT 147
           H+    TGN+     + +  S+ + DPQS+AA++RR RIS+R KILQ +VP G+K+D V+
Sbjct: 25  HRHKSETGNTK----RSRSTSTLSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVS 84

Query: 148 MLEKAISYVKFLQRVKEGKLQIFHKLGKPLMPFFHHKEKEAEAQVVKSDGVFGLRVDRHY 207
           ML++AISYVKFL      K QI++   + ++ F +  E  +        G FG ++   Y
Sbjct: 85  MLDEAISYVKFL------KAQIWYH--QNMLLFINDHETTSSCTYSPGAGEFGPKL-FGY 144

Query: 208 SNELATEMYAYQNARPM 225
            ++ A  M  Y    P+
Sbjct: 145 DDDYAPIMDTYSQGVPL 148

[Close]
BLAST of Cp4.1LG13g05200 vs. TAIR10
Match: AT1G27740.1 (AT1G27740.1 root hair defective 6-like 4)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-13
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1 

Query: 103 KKQCKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ 161
           K +    TA DPQS+ A+ RRE+I+ERLK LQ LVPNG+KVD+ TMLE+A+ YVKFLQ
Sbjct: 166 KTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQ 223

[Close]
BLAST of Cp4.1LG13g05200 vs. TAIR10
Match: AT4G33880.1 (AT4G33880.1 ROOT HAIR DEFECTIVE 6-LIKE 2)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-13
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1 

Query: 103 KKQCKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ 161
           K +     A DPQS+ A+ RRERI+ERL+ILQ LVPNG+KVD+ TMLE+A+ YVKFLQ
Sbjct: 265 KTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQ 322

[Close]
BLAST of Cp4.1LG13g05200 vs. NCBI nr
Match: gi|449445206|ref|XP_004140364.1| (PREDICTED: putative transcription factor bHLH086 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 3.4e-41
Identity = 113/187 (60.43%), Postives = 124/187 (66.31%), Query Frame = 1 

Query: 11  QQISDSLINFKCGIGNNEPLLSFEPQGVCQLD-THNWD-QLRAMEDP------------S 70
           QQ   SLINF   + NNE LLSFE QG+CQLD T+NWD Q R MEDP            S
Sbjct: 52  QQQQQSLINFGHKM-NNESLLSFEAQGICQLDLTYNWDDQQRVMEDPNCFQTATNHNNYS 111

Query: 71  PPRHH------GDHSPLYGCL--------SYAIQDPEAAQDITGNHKRAHTTGNSSEGVC 130
           P + H      GD+  +Y  L        S +IQ+ E  Q+I  NHKR+HTTG SS  VC
Sbjct: 112 PSKDHHHHNKNGDNGSVYEWLYSESTTDFSDSIQEAEGTQEIVPNHKRSHTTGESSGSVC 171

Query: 131 KKQC---------KSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAI 161
           KKQC         KS+TAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAI
Sbjct: 172 KKQCTAAPKKQKPKSATAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAI 231

[Close]
BLAST of Cp4.1LG13g05200 vs. NCBI nr
Match: gi|659121136|ref|XP_008460515.1| (PREDICTED: putative transcription factor bHLH086 [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 6.4e-40
Identity = 113/188 (60.11%), Postives = 125/188 (66.49%), Query Frame = 1 

Query: 9   QEQQISDSLINFKCGIGNNEPLLSFEPQGVCQLD-THNWD-QLRAMEDP----------- 68
           Q+QQ   SLINF   + NNE LLSFE QG+CQLD T+NWD Q R MEDP           
Sbjct: 52  QQQQ---SLINFGHKM-NNESLLSFEAQGICQLDLTYNWDDQERVMEDPNCFQTATSHNN 111

Query: 69  -SPPRHH-----GDHSPLYGCL--------SYAIQDPEAAQDITGNHKRAHTTGNSSEGV 128
            SP + H     G+   +Y  L        S +IQD E  Q+I  NHKR+H+TG SS  V
Sbjct: 112 YSPSKDHHHNKNGNSGSVYEWLYCESTTDFSDSIQDAEGTQEIVPNHKRSHSTGESSGSV 171

Query: 129 CKKQC---------KSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKA 161
           CKKQC         KS+TAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKA
Sbjct: 172 CKKQCTAAPKKQKPKSATAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKA 231

[Close]
BLAST of Cp4.1LG13g05200 vs. NCBI nr
Match: gi|694392655|ref|XP_009371796.1| (PREDICTED: putative transcription factor bHLH086 [Pyrus x bretschneideri])

HSP 1 Score: 110.2 bits (274), Expect = 5.1e-21
Identity = 94/203 (46.31%), Postives = 108/203 (53.20%), Query Frame = 1 

Query: 15  DSLINFKCGIGNN-EPLLSFEP-----QGV----------CQLDTHN-----WDQLRAME 74
           D LINFK G  N+ E LLSF+      Q +          C  D ++     W+Q+  + 
Sbjct: 33  DHLINFKSGYYNSGESLLSFDKNKQSSQSIYLNSSTSKDDCDSDLYHGSYSQWNQMAGIG 92

Query: 75  DPS---------------------PPRHHGDHSPLYGCL----SYAIQDPEAAQDITGNH 134
           DPS                         HGDH   YG L    S + Q+P+  +   G H
Sbjct: 93  DPSLSGNFSCLQTASNYSSSIPNTSKEDHGDHEA-YGWLHSEASDSFQEPDEQK--AGFH 152

Query: 135 KRAHTTGNSSEGVCKKQC---------KSSTA--KDPQSIAAKNRRERISERLKILQELV 161
           KR   TG S +   KKQC         KSST+  KDPQSIAAKNRRERISERLKILQELV
Sbjct: 153 KRP-ITGESMQP-SKKQCTGATKKPKPKSSTSPSKDPQSIAAKNRRERISERLKILQELV 212

[Close]
BLAST of Cp4.1LG13g05200 vs. NCBI nr
Match: gi|255583421|ref|XP_002532470.1| (PREDICTED: transcription factor bHLH83 [Ricinus communis])

HSP 1 Score: 107.5 bits (267), Expect = 3.3e-20
Identity = 81/160 (50.62%), Postives = 97/160 (60.62%), Query Frame = 1 

Query: 18  INFKCGIGNNE--PLLSFEPQGV----CQLDTHNWDQLRAMEDPSPPRHHGDHSPLYGCL 77
           ++F C    N+  P  S +P+ V    C     N++ +   E   P    GD     G +
Sbjct: 130 VDFNCNYQWNQMNPKSSADPRLVENINCFHTASNFNSIDNSEKEDP----GDWLYSEGTI 189

Query: 78  --SYAIQDPEAAQDITGNHKRAHTTGNSSEGVCKKQCKSST---------AKDPQSIAAK 137
              ++IQ+P   QD    HKR H  G S++ V KKQC S+T         +KDPQSIAAK
Sbjct: 190 ITDHSIQEP-GTQD-ANFHKRPHM-GESTQAV-KKQCNSATKKQKPKTSPSKDPQSIAAK 249

Query: 138 NRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ 161
           NRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ
Sbjct: 250 NRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ 281

[Close]
BLAST of Cp4.1LG13g05200 vs. NCBI nr
Match: gi|823155885|ref|XP_012477890.1| (PREDICTED: putative transcription factor bHLH086 [Gossypium raimondii])

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 87/180 (48.33%), Postives = 96/180 (53.33%), Query Frame = 1 

Query: 16  SLINFKCG------IGNNEPLLSFEP-----QGVCQLDTHNWDQLRAMEDPSPPRHHGDH 75
           SLINFK         G N  LLSFE      Q    L T  +    +M D   PR   D 
Sbjct: 38  SLINFKDSGYDNFIRGTNGSLLSFEQNEKGRQHTTCLRTSGYKHGHSMVDQWDPRAVEDF 97

Query: 76  SPLYGCL--------------SYAIQDPEA-AQDITGNHKRAHTTGNSSEGVCKKQC--- 135
           S                    S +IQDP + A D+    KR H  G++     KKQC   
Sbjct: 98  SCFETASNGDWLYYDEAVFADSSSIQDPGSPAADL----KRPHVGGSNQ--ALKKQCTNE 157

Query: 136 ------KSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ 161
                 KS  +K+PQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ
Sbjct: 158 TKKGKTKSEPSKEPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQ 211

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g05200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH083_ARATH1.2e-1763.33Transcription factor bHLH83 OS=Arabidopsis thaliana GN=BHLH83 PE=2 SV=1[more]
BH086_ARATH1.3e-1653.04Putative transcription factor bHLH086 OS=Arabidopsis thaliana GN=BHLH86 PE=3 SV=... [more]
BH140_ARATH2.5e-1236.50Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140 PE=3 SV=1[more]
BH084_ARATH3.3e-1263.79Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2 SV=1[more]
BH054_ARATH4.3e-1263.79Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2 SV=1[more]
BLAST of Cp4.1LG13g05200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KN55_CUCSA2.4e-4160.43Uncharacterized protein OS=Cucumis sativus GN=Csa_5G420280 PE=4 SV=1[more]
B9T2K1_RICCO2.3e-2050.63DNA binding protein, putative OS=Ricinus communis GN=RCOM_0285440 PE=4 SV=1[more]
A0A0D2R023_GOSRA1.1e-1948.33Uncharacterized protein OS=Gossypium raimondii GN=B456_004G064400 PE=4 SV=1[more]
M5WZF1_PRUPE1.5e-1942.38Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025775mg PE=4 S... [more]
A0A103Y591_CYNCS1.5e-1940.89Myc-type, basic helix-loop-helix (BHLH) domain-containing protein OS=Cynara card... [more]
BLAST of Cp4.1LG13g05200 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G66470.16.6e-1963.33 ROOT HAIR DEFECTIVE6[more]
AT5G37800.17.3e-1853.04 RHD SIX-LIKE 1[more]
AT5G01310.11.4e-1336.50 APRATAXIN-like[more]
AT1G27740.12.4e-1363.79 root hair defective 6-like 4[more]
AT4G33880.12.4e-1363.79 ROOT HAIR DEFECTIVE 6-LIKE 2[more]
BLAST of Cp4.1LG13g05200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445206|ref|XP_004140364.1|3.4e-4160.43PREDICTED: putative transcription factor bHLH086 [Cucumis sativus][more]
gi|659121136|ref|XP_008460515.1|6.4e-4060.11PREDICTED: putative transcription factor bHLH086 [Cucumis melo][more]
gi|694392655|ref|XP_009371796.1|5.1e-2146.31PREDICTED: putative transcription factor bHLH086 [Pyrus x bretschneideri][more]
gi|255583421|ref|XP_002532470.1|3.3e-2050.63PREDICTED: transcription factor bHLH83 [Ricinus communis][more]
gi|823155885|ref|XP_012477890.1|1.6e-1948.33PREDICTED: putative transcription factor bHLH086 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g05200.1Cp4.1LG13g05200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 108..165
score: 6.4
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 118..160
score: 3.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 116..165
score: 1.5
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 110..159
score: 15
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 110..174
score: 3.53
NoneNo IPR availablePANTHERPTHR16223FAMILY NOT NAMEDcoord: 107..160
score: 4.7
NoneNo IPR availablePANTHERPTHR16223:SF19TRANSCRIPTION FACTOR BHLH83-RELATEDcoord: 107..160
score: 4.7