CmoCh04G024010 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G024010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transcription factor
Location	Cmo_Chr04 : 17881789 .. 17884338 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCAATGGCACTTGCAAACTCATCTGTACATGAAGCCGATGGCATGGACAAAGCTGGTGGATATATCAAGTCTATACCCATTGCTACCCATGACACTCCAAATGCTACCTTTCTCTTTCGAAACACGACGAATTACCAACTCGATCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAACTGCCTCATTCTCTCATCAACTTCAAGTGTGGGATTGACAGTATCTTCCATAAGAACAATGAATCTTTGCTGAGCTTTGAGCCACAAGGGGTTTGTCAAGACACTTACAATTGGGATGATCACCAGCGTTTGATGGAAGATCCCAATTGCTTTCAAACAGCTACCAATGGTTATTCCTCTCCAAAAGAGAACAAAAATGGTGATGGGTCTGTGTATGATTGGCTTTACTCTGAAGCAAGTGGTGTTTCTGATGCCATTCAGGAAGCTGAAGGAGCTCACGAGGTTGCCAATCAAAAGCGACCTCATATGGTATTGAATTCCAAAGTTTTCAATTGTTGTTTTCTGCAATAAGTTTAAAATTTTTTTTTTTTCCTTTTTGTTGAGAAAATGTGAGATTCGTATCGATTGGGGAGGAGAACAAAACATTCTTTATAAGGGCATGGAAACCTCTCCTTAGTAGACGCGTTTTAAAAACCTTGAAGAAAAGTCCGAAAGGTAAAATCAAAGAAGACAATATCTACTAGCAGTGGGCTTGAGCCGTTACAAATGGTATCAGAGCCAGACAACGGATGATGAGCCAGTGAGGAGGATAAGCTCCAAAGAGGGGTGGAAAAGAGGCGATGTGCTAGCAAGCACACTAGGCCCTAAAGGAGGTGGATTGGAGGGTCCCACATCAATTGGAGAAGGGAACAAGTGTCAGCGGGGACGCTGGCCACAAAAGAAGGTGGATTGTGAGATCCCACATCGATTGGGGAGGAGAACAAAACATTCTTTATAAAGGTGTAGAAACCTCTCACTACAAAAAAGGACAGGCTGGGGTAGAAAATGTTTGAATTCTTAACTAAATTACAAGTTTTTTTATTTTGAAAGTTAGCTTAGAAGAAGTGTTTGATTGATTGATCGACTGACAGGGAGAGAGCAGTGGGAGTGTTAGTAAGAAGCAATGCACAGCAGCTGCAGCTAAGAAACAGAAACCCAAATCATCAACAGCAAAGGATCCACAGAGCATTGCAGCCAAGGTTTTAGTTTTGTTTTTCTGACAACGTTGGCTTACAATTTAAGGAACAAATAATTTTAAGGTTCTGAAAGAATGTCTGCTTTTGTCTTTGTTTTTATGTTTCTTAGAATCGACGAGAGAGGATTAGCGAGCGGCTGAAGATACTTCAAGAATTGGTTCCCAATGGCTCCAAGGTGCTTACTCTTATCTAATATTAAAAACATCTTCATATCTCAATACGCTCCGTTCCTTCGTTCTAATAAAGGCAGATCTTCCTCTTAACTAGCCAATGTGAAACTCCAAAAATCTCTTCATCTTAAATAGTCATCTACTCGTCTAAACACTATCCAGTGTCGGCTCCTTTCAATCAATCTAATAGATCTCCTTCATGCATCGTTTCTATGAACACACCTTCGAGACTCACATGTTTATTTATTTGACACCCACCCAAGAATTCTATGTGAGATTCCATATTGATTGTAGAGGGGAACGAAGCATTCTTTATAAGGGTATAGATATCTCTCGGTAGGTGGGCTTAGGCTGTTATATTCCATTACTAAGTTATGGATATGATTCTGATAGGACAAGTGATCTTGTCCACGTTGAATATATACTCTCGTAGTTTTGCTTTTGATTCCTCAGAAACTTAACTTTCTCGGAACTCTACTCTTTCAGGTTGATTTGGTAACGATGTTGGAAAAAGCAATTAGTTATGTAAAATTTCTTCAACTTCAAGTGAAGGTACAAATTCCATATCACTCTGTTTCCAAATTTTGGATAAAGATCCTTCCTTCTTGGCTCTGATATCATAGTAAAAATTTTGAATATCAGATCCTAGCTACGGATGAGTTTTGGCCAGTTCAAGGTGGGAAAGCTCCTGATATATCACAAGTTAAGGAAGCCATTGATGCTATTCTTTCATCTCAAAGAGAAAGAAGTTCAAGCTCAAACAGTCAAAAATGATGGAATCAGTAGACATAATTTGTATGAGAACAGTTTAGAGCACTCAATAATTCAAACCCATGAATTAATAAACCATTCTGATAAAGAAATGACAAAAAAAAACGACAAGATTTGGATCAGAAATTAATGCTGTTCCTTAAAAAAATGAAGCTGGAAATGTTGTTCTACCCAGTTATGAACTACTCAATGAAGGCCTCACTTGGAGATCTGTTTAGAAAATTTTGTTTTTTAGAGGAGAATCTACCAGCAAATTATATGTATATCTTCTGCAGAATTTCATACAGGCGATTAAATGAACAAAATTAAGTCTGTAATGATCTACAAATAATTAATGCACAGATTTGGAAGATTTAGGATCTTCTCCATTAATAATATATTAAAAGAAAAATGACAGATTATACAAATAAAAT

mRNA sequence

CTCTCAATGGCACTTGCAAACTCATCTGTACATGAAGCCGATGGCATGGACAAAGCTGGTGGATATATCAAGTCTATACCCATTGCTACCCATGACACTCCAAATGCTACCTTTCTCTTTCGAAACACGACGAATTACCAACTCGATCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAACTGCCTCATTCTCTCATCAACTTCAAGTGTGGGATTGACAGTATCTTCCATAAGAACAATGAATCTTTGCTGAGCTTTGAGCCACAAGGGGTTTGTCAAGACACTTACAATTGGGATGATCACCAGCGTTTGATGGAAGATCCCAATTGCTTTCAAACAGCTACCAATGGTTATTCCTCTCCAAAAGAGAACAAAAATGGTGATGGGTCTGTGTATGATTGGCTTTACTCTGAAGCAAGTGGTGTTTCTGATGCCATTCAGGAAGCTGAAGGAGCTCACGAGGTTGCCAATCAAAAGCGACCTCATATGGGAGAGAGCAGTGGGAGTGTTAGTAAGAAGCAATGCACAGCAGCTGCAGCTAAGAAACAGAAACCCAAATCATCAACAGCAAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAGAGGATTAGCGAGCGGCTGAAGATACTTCAAGAATTGGTTCCCAATGGCTCCAAGATCCTAGCTACGGATGAGTTTTGGCCAGTTCAAGGTGGGAAAGCTCCTGATATATCACAAGTTAAGGAAGCCATTGATGCTATTCTTTCATCTCAAAGAGAAAGAAGTTCAAGCTCAAACAGTCAAAAATGATGGAATCAGTAGACATAATTTGTATGAGAACAGTTTAGAGCACTCAATAATTCAAACCCATGAATTAATAAACCATTCTGATAAAGAAATGACAAAAAAAAACGACAAGATTTGGATCAGAAATTAATGCTGTTCCTTAAAAAAATGAAGCTGGAAATGTTGTTCTACCCAGTTATGAACTACTCAATGAAGGCCTCACTTGGAGATCTGTTTAGAAAATTTTGTTTTTTAGAGGAGAATCTACCAGCAAATTATATGTATATCTTCTGCAGAATTTCATACAGGCGATTAAATGAACAAAATTAAGTCTGTAATGATCTACAAATAATTAATGCACAGATTTGGAAGATTTAGGATCTTCTCCATTAATAATATATTAAAAGAAAAATGACAGATTATACAAATAAAAT

Coding sequence (CDS)

ATGGCACTTGCAAACTCATCTGTACATGAAGCCGATGGCATGGACAAAGCTGGTGGATATATCAAGTCTATACCCATTGCTACCCATGACACTCCAAATGCTACCTTTCTCTTTCGAAACACGACGAATTACCAACTCGATCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAACTGCCTCATTCTCTCATCAACTTCAAGTGTGGGATTGACAGTATCTTCCATAAGAACAATGAATCTTTGCTGAGCTTTGAGCCACAAGGGGTTTGTCAAGACACTTACAATTGGGATGATCACCAGCGTTTGATGGAAGATCCCAATTGCTTTCAAACAGCTACCAATGGTTATTCCTCTCCAAAAGAGAACAAAAATGGTGATGGGTCTGTGTATGATTGGCTTTACTCTGAAGCAAGTGGTGTTTCTGATGCCATTCAGGAAGCTGAAGGAGCTCACGAGGTTGCCAATCAAAAGCGACCTCATATGGGAGAGAGCAGTGGGAGTGTTAGTAAGAAGCAATGCACAGCAGCTGCAGCTAAGAAACAGAAACCCAAATCATCAACAGCAAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAGAGGATTAGCGAGCGGCTGAAGATACTTCAAGAATTGGTTCCCAATGGCTCCAAGATCCTAGCTACGGATGAGTTTTGGCCAGTTCAAGGTGGGAAAGCTCCTGATATATCACAAGTTAAGGAAGCCATTGATGCTATTCTTTCATCTCAAAGAGAAAGAAGTTCAAGCTCAAACAGTCAAAAATGA

Homology

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BLAST of CmoCh04G024010 vs. Swiss-Prot
Match: BH086_ARATH (Putative transcription factor bHLH086 OS=Arabidopsis thaliana GN=BHLH86 PE=3 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 9.7e-29
Identity = 92/198 (46.46%), Postives = 120/198 (60.61%), Query Frame = 1


Query: 96  WDDHQ------RLMEDPNCFQTAT------NGYSSPKENKNGDGSVYDWLYSEASGVSDA 155
           W  HQ      R+++ PN F+T +      N  S P  N +G+G   DWLYS ++ V+  
Sbjct: 109 WSHHQVDSISPRVIKTPNSFETTSSFGLTSNSMSKPATN-HGNG---DWLYSGSTIVNIG 168

Query: 156 IQEAEGAHEVANQKRPHMGESSGSVSKKQCTAAAAKKQKPKSSTA-KDPQSIAAKNRRER 215
            +    + ++A  KRP  GE++  +SKK  +    K  KPK++T+ KDPQS+AAKNRRER
Sbjct: 169 SRHESTSPKLAGNKRPFTGENT-QLSKKPSSGTNGKI-KPKATTSPKDPQSLAAKNRRER 228

Query: 216 ISERLKILQELVPNGSKI----------------------LATDEFWPVQGGKAPDISQV 259
           ISERLK+LQELVPNG+K+                      LA DEFWP QGGKAPDISQV
Sbjct: 229 ISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVLAADEFWPAQGGKAPDISQV 288

[Close]

BLAST of CmoCh04G024010 vs. Swiss-Prot
Match: BH083_ARATH (Transcription factor bHLH83 OS=Arabidopsis thaliana GN=BHLH83 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.4e-27
Identity = 83/164 (50.61%), Postives = 105/164 (64.02%), Query Frame = 1


Query: 118 SPKENKNGDGSVYDWLYSEASGVSDAIQEAEGAHEVANQKRPHMGESSGSVSKKQCTAAA 177
           SP+  +   G   DWLYS+++ V+   +    + + A  KR H GES+     K+ ++  
Sbjct: 134 SPRSTETPQGQK-DWLYSDSTVVTTGSRNESLSPKSAGNKRSHTGESTQP--SKKLSSGV 193

Query: 178 AKKQKPKSSTA-KDPQSIAAKNRRERISERLKILQELVPNGSKI---------------- 237
             K KPK +T+ KDPQS+AAKNRRERISERLKILQELVPNG+K+                
Sbjct: 194 TGKTKPKPTTSPKDPQSLAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKFL 253

Query: 238 ------LATDEFWPVQGGKAPDISQVKEAIDAIL-SSQRERSSS 258
                 LATDEFWP QGGKAPDISQVK+AIDAIL SSQR+R+S+
Sbjct: 254 QVQVKVLATDEFWPAQGGKAPDISQVKDAIDAILSSSQRDRNSN 294

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BLAST of CmoCh04G024010 vs. TrEMBL
Match: A0A0A0KN55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G420280 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.3e-80
Identity = 197/301 (65.45%), Postives = 214/301 (71.10%), Query Frame = 1


Query: 1   MALANSSVHEADGMDK-AGGYIKSIPIAT---HDTPNATFLFRNTTNYQLDHHQQQQQQQ 60
           MALANS++ E DGM+K  GGY+KS+ I     H  PN  F+FR+TTNYQL   QQQ    
Sbjct: 1   MALANSAIQEVDGMEKNGGGYLKSLAIGKGHDHQNPNGDFVFRDTTNYQLGQQQQQ---- 60

Query: 61  QQLPHSLINFKCGIDSIFHK-NNESLLSFEPQGVCQD--TYNWDDHQRLMEDPNCFQTAT 120
                SLINF        HK NNESLLSFE QG+CQ   TYNWDD QR+MEDPNCFQTAT
Sbjct: 61  -----SLINFG-------HKMNNESLLSFEAQGICQLDLTYNWDDQQRVMEDPNCFQTAT 120

Query: 121 N--GYSSPKE----NKNGD-GSVYDWLYSEAS-GVSDAIQEAEGAHEVA-NQKRPHM-GE 180
           N   YS  K+    NKNGD GSVY+WLYSE++   SD+IQEAEG  E+  N KR H  GE
Sbjct: 121 NHNNYSPSKDHHHHNKNGDNGSVYEWLYSESTTDFSDSIQEAEGTQEIVPNHKRSHTTGE 180

Query: 181 SSGSVSKKQCTAAAAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSK---- 240
           SSGSV KKQCTAA  KKQKPKS+TAKDPQSIAAKNRRERISERLKILQELVPNGSK    
Sbjct: 181 SSGSVCKKQCTAAP-KKQKPKSATAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLV 240

Query: 241 ------------------ILATDEFWPVQGGKAPDISQVKEAIDAILSSQRERSSSSNSQ 263
                             ILATDEFWPVQGGKAPDISQVKEAID ILSSQRERSSSSNS+
Sbjct: 241 TMLEKAISYVKFLQLQVKILATDEFWPVQGGKAPDISQVKEAIDVILSSQRERSSSSNSE 284

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BLAST of CmoCh04G024010 vs. TrEMBL
Match: V4SXU2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013420mg PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.2e-47
Identity = 138/285 (48.42%), Postives = 169/285 (59.30%), Query Frame = 1


Query: 13  GMDKAGGYIKSIPIATHDTPNATFLFRNTTNYQLDHHQQQQQQQQQLPHSLINFKCGIDS 72
           G  KA G++KSI I+   +P++     N+  Y+  + ++ +        SLINFK G D 
Sbjct: 22  GSKKAPGFVKSIGISNTSSPSSA----NSNGYEFHNAEEARD-------SLINFKSGHDH 81

Query: 73  IFHKNNESLLSFEPQGVCQDTYN-WD------------DHQRLMEDPNCFQTATN-GYSS 132
             H N  +LLSFE      D Y+ W+            DH RLMED NCF TA+N G+  
Sbjct: 82  FMHANASNLLSFEQNETKDDEYSMWEGNFNQINQKYSSDH-RLMEDFNCFDTASNYGFMI 141

Query: 133 PKENKNGDGSVYDWLYSEASGVSDAIQEAEGAHEVANQKRPHMGESSGSVSKKQCTAAAA 192
               ++  G   DWLY+EA+ V+D I E+      ++ KRP+ GES  +V KKQC  AA 
Sbjct: 142 NNSARDCHG---DWLYTEATAVTDTILESGSQDASSSLKRPNTGESMQAV-KKQCAIAAT 201

Query: 193 KKQKPKSSTA---KDPQSIAAKNRRERISERLKILQELVPNGSKI--------------- 252
           KK   K  T+   KDPQSIAAKNRRERISERLKILQELVPNGSK+               
Sbjct: 202 KKTNNKQKTSAPPKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKF 261

Query: 253 -------LATDEFWPVQGGKAPDISQVKEAIDAILSSQRERSSSS 259
                  LATDEFWPVQGGKAPDISQV+EAIDAILSSQR+RSSSS
Sbjct: 262 LQLQVKVLATDEFWPVQGGKAPDISQVREAIDAILSSQRDRSSSS 290

[Close]

BLAST of CmoCh04G024010 vs. TrEMBL
Match: A0A067FAC6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038918mg PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 7.2e-47
Identity = 137/285 (48.07%), Postives = 169/285 (59.30%), Query Frame = 1


Query: 13  GMDKAGGYIKSIPIATHDTPNATFLFRNTTNYQLDHHQQQQQQQQQLPHSLINFKCGIDS 72
           G  KA G++KSI I+   +P++     N+  Y+  + ++ +        SLINFK G D 
Sbjct: 22  GSKKAPGFVKSIGISNTSSPSSA----NSNGYEFHNAEEARD-------SLINFKSGHDH 81

Query: 73  IFHKNNESLLSFEPQGVCQDTYN-WD------------DHQRLMEDPNCFQTATN-GYSS 132
             H N  +LLSFE      D Y+ W+            DH RLMED NCF TA+N G+  
Sbjct: 82  FMHANASNLLSFEQNETKDDEYSMWEGNFNQINQKYSSDH-RLMEDFNCFDTASNYGFMI 141

Query: 133 PKENKNGDGSVYDWLYSEASGVSDAIQEAEGAHEVANQKRPHMGESSGSVSKKQCTAAAA 192
               ++  G   DWLY+EA+ V+D I E+      ++ KRP+ G+S  +V KKQC  AA 
Sbjct: 142 NNSARDCHG---DWLYTEATAVTDTILESGSQDASSSLKRPNTGDSMQAV-KKQCAIAAT 201

Query: 193 KKQKPKSSTA---KDPQSIAAKNRRERISERLKILQELVPNGSKI--------------- 252
           KK   K  T+   KDPQSIAAKNRRERISERLKILQELVPNGSK+               
Sbjct: 202 KKTNNKQKTSAPPKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKF 261

Query: 253 -------LATDEFWPVQGGKAPDISQVKEAIDAILSSQRERSSSS 259
                  LATDEFWPVQGGKAPDISQV+EAIDAILSSQR+RSSSS
Sbjct: 262 LQLQVKVLATDEFWPVQGGKAPDISQVREAIDAILSSQRDRSSSS 290

[Close]

BLAST of CmoCh04G024010 vs. TrEMBL
Match: B9T2K1_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_0285440 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.5e-44
Identity = 128/257 (49.81%), Postives = 156/257 (60.70%), Query Frame = 1


Query: 53  QQQQQQLPHSLINFKCGIDSIFHKNNESLLSFEPQ---------GVCQDTYNWD-----D 112
           + Q  +  HSLINF+ G D   H N  SLLSFE           G+ +D   W+     +
Sbjct: 77  RHQAHEGAHSLINFRGGYDGFLHGNG-SLLSFEQNNKVSSQTSSGLKEDYSTWEVDFNCN 136

Query: 113 HQ------------RLMEDPNCFQTATNGYSSPKENKNGDGSVYDWLYSEASGVSDAIQE 172
           +Q            RL+E+ NCF TA+N  S     K   G   DWLYSE + ++D   +
Sbjct: 137 YQWNQMNPKSSADPRLVENINCFHTASNFNSIDNSEKEDPG---DWLYSEGTIITDHSIQ 196

Query: 173 AEGAHEVANQKRPHMGESSGSVSKKQCTAAAAKKQKPKSSTAKDPQSIAAKNRRERISER 232
             G  +    KRPHMGES+ +V KKQC +A  KKQKPK+S +KDPQSIAAKNRRERISER
Sbjct: 197 EPGTQDANFHKRPHMGESTQAV-KKQCNSAT-KKQKPKTSPSKDPQSIAAKNRRERISER 256

Query: 233 LKILQELVPNGSKI----------------------LATDEFWPVQGGKAPDISQVKEAI 262
           LKILQELVPNGSK+                      LATDEFWPVQGGKAPD+SQVKEAI
Sbjct: 257 LKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDVSQVKEAI 316

[Close]

BLAST of CmoCh04G024010 vs. TrEMBL
Match: A0A061EH34_THECC (Rhd six-like 1, putative OS=Theobroma cacao GN=TCM_019210 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.6e-44
Identity = 136/307 (44.30%), Postives = 174/307 (56.68%), Query Frame = 1


Query: 10  EADGMDKAGGYIKSIPIATHDTPNATFLFRNTTNYQ------LDHHQQQQQQQQQLPHSL 69
           E  G++K GG +K+   ++    + +F   N+ N        +++H ++ Q       SL
Sbjct: 34  EGGGLEKLGGVVKNFSTSS----STSFSSPNSVNSDGLAFRAVNYHPEEAQ-------SL 93

Query: 70  INFK-CGIDSIFHKNNESLLSFEPQ----------------------GVCQDTYNWDD-- 129
           INFK  G D+  H  N SLLSFE                        G     Y W+   
Sbjct: 94  INFKGAGYDNFMHGTNGSLLSFEQNERVLQNTYLKTSSHKDEYSIWAGSLNQNYQWNQVN 153

Query: 130 -----HQRLMEDPNCFQTATNGYSSPKENKNGDGSVYDWLYSEASGVSDAIQEAEGAHEV 189
                  R++ED +CF+TA+N  S     K   G   DWLYSEA+ V+++IQE+ G+ E 
Sbjct: 154 PKSSTDPRVVEDFSCFETASNFNSMTSATKENHG---DWLYSEAAVVANSIQES-GSPEA 213

Query: 190 ANQKRPHMGESSGSVSKKQCTAAAAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQEL 249
           +  KRPH GES+ ++ KKQC+  A KK K KS  +KDPQSIAAKNRRERISERLKILQEL
Sbjct: 214 SGLKRPHTGESNQAL-KKQCSNEA-KKAKTKSGPSKDPQSIAAKNRRERISERLKILQEL 273

Query: 250 VPNGSKI----------------------LATDEFWPVQGGKAPDISQVKEAIDAILSSQ 259
           VPNGSK+                      LATDEFWPVQGGKAPDISQV+EAIDAILSSQ
Sbjct: 274 VPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVREAIDAILSSQ 323

[Close]

BLAST of CmoCh04G024010 vs. TAIR10
Match: AT5G37800.1 (AT5G37800.1 RHD SIX-LIKE 1)

HSP 1 Score: 128.6 bits (322), Expect = 5.5e-30
Identity = 92/198 (46.46%), Postives = 120/198 (60.61%), Query Frame = 1


Query: 96  WDDHQ------RLMEDPNCFQTAT------NGYSSPKENKNGDGSVYDWLYSEASGVSDA 155
           W  HQ      R+++ PN F+T +      N  S P  N +G+G   DWLYS ++ V+  
Sbjct: 109 WSHHQVDSISPRVIKTPNSFETTSSFGLTSNSMSKPATN-HGNG---DWLYSGSTIVNIG 168

Query: 156 IQEAEGAHEVANQKRPHMGESSGSVSKKQCTAAAAKKQKPKSSTA-KDPQSIAAKNRRER 215
            +    + ++A  KRP  GE++  +SKK  +    K  KPK++T+ KDPQS+AAKNRRER
Sbjct: 169 SRHESTSPKLAGNKRPFTGENT-QLSKKPSSGTNGKI-KPKATTSPKDPQSLAAKNRRER 228

Query: 216 ISERLKILQELVPNGSKI----------------------LATDEFWPVQGGKAPDISQV 259
           ISERLK+LQELVPNG+K+                      LA DEFWP QGGKAPDISQV
Sbjct: 229 ISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVLAADEFWPAQGGKAPDISQV 288

[Close]

BLAST of CmoCh04G024010 vs. TAIR10
Match: AT1G66470.1 (AT1G66470.1 ROOT HAIR DEFECTIVE6)

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-28
Identity = 83/164 (50.61%), Postives = 105/164 (64.02%), Query Frame = 1


Query: 118 SPKENKNGDGSVYDWLYSEASGVSDAIQEAEGAHEVANQKRPHMGESSGSVSKKQCTAAA 177
           SP+  +   G   DWLYS+++ V+   +    + + A  KR H GES+     K+ ++  
Sbjct: 134 SPRSTETPQGQK-DWLYSDSTVVTTGSRNESLSPKSAGNKRSHTGESTQP--SKKLSSGV 193

Query: 178 AKKQKPKSSTA-KDPQSIAAKNRRERISERLKILQELVPNGSKI---------------- 237
             K KPK +T+ KDPQS+AAKNRRERISERLKILQELVPNG+K+                
Sbjct: 194 TGKTKPKPTTSPKDPQSLAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKFL 253

Query: 238 ------LATDEFWPVQGGKAPDISQVKEAIDAIL-SSQRERSSS 258
                 LATDEFWP QGGKAPDISQVK+AIDAIL SSQR+R+S+
Sbjct: 254 QVQVKVLATDEFWPAQGGKAPDISQVKDAIDAILSSSQRDRNSN 294

[Close]

BLAST of CmoCh04G024010 vs. TAIR10
Match: AT5G67060.1 (AT5G67060.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-06
Identity = 23/33 (69.70%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 188 AKDPQSIAAKNRRERISERLKILQELVPNGSKI 221
           +KDPQS+AA++RRERISER++ILQ LVP G+K+
Sbjct: 129 SKDPQSVAARHRRERISERIRILQRLVPGGTKM 161

[Close]

BLAST of CmoCh04G024010 vs. TAIR10
Match: AT3G50330.1 (AT3G50330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-06
Identity = 23/33 (69.70%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 188 AKDPQSIAAKNRRERISERLKILQELVPNGSKI 221
           +KDPQS+AA++RRERISER++ILQ LVP G+K+
Sbjct: 126 SKDPQSVAARHRRERISERIRILQRLVPGGTKM 158

[Close]

BLAST of CmoCh04G024010 vs. NCBI nr
Match: gi|449445206|ref|XP_004140364.1| (PREDICTED: putative transcription factor bHLH086 [Cucumis sativus])

HSP 1 Score: 307.8 bits (787), Expect = 1.9e-80
Identity = 197/301 (65.45%), Postives = 214/301 (71.10%), Query Frame = 1


Query: 1   MALANSSVHEADGMDK-AGGYIKSIPIAT---HDTPNATFLFRNTTNYQLDHHQQQQQQQ 60
           MALANS++ E DGM+K  GGY+KS+ I     H  PN  F+FR+TTNYQL   QQQ    
Sbjct: 1   MALANSAIQEVDGMEKNGGGYLKSLAIGKGHDHQNPNGDFVFRDTTNYQLGQQQQQ---- 60

Query: 61  QQLPHSLINFKCGIDSIFHK-NNESLLSFEPQGVCQD--TYNWDDHQRLMEDPNCFQTAT 120
                SLINF        HK NNESLLSFE QG+CQ   TYNWDD QR+MEDPNCFQTAT
Sbjct: 61  -----SLINFG-------HKMNNESLLSFEAQGICQLDLTYNWDDQQRVMEDPNCFQTAT 120

Query: 121 N--GYSSPKE----NKNGD-GSVYDWLYSEAS-GVSDAIQEAEGAHEVA-NQKRPHM-GE 180
           N   YS  K+    NKNGD GSVY+WLYSE++   SD+IQEAEG  E+  N KR H  GE
Sbjct: 121 NHNNYSPSKDHHHHNKNGDNGSVYEWLYSESTTDFSDSIQEAEGTQEIVPNHKRSHTTGE 180

Query: 181 SSGSVSKKQCTAAAAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSK---- 240
           SSGSV KKQCTAA  KKQKPKS+TAKDPQSIAAKNRRERISERLKILQELVPNGSK    
Sbjct: 181 SSGSVCKKQCTAAP-KKQKPKSATAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLV 240

Query: 241 ------------------ILATDEFWPVQGGKAPDISQVKEAIDAILSSQRERSSSSNSQ 263
                             ILATDEFWPVQGGKAPDISQVKEAID ILSSQRERSSSSNS+
Sbjct: 241 TMLEKAISYVKFLQLQVKILATDEFWPVQGGKAPDISQVKEAIDVILSSQRERSSSSNSE 284

[Close]

BLAST of CmoCh04G024010 vs. NCBI nr
Match: gi|659121136|ref|XP_008460515.1| (PREDICTED: putative transcription factor bHLH086 [Cucumis melo])

HSP 1 Score: 295.0 bits (754), Expect = 1.3e-76
Identity = 191/299 (63.88%), Postives = 213/299 (71.24%), Query Frame = 1


Query: 1   MALANSSVHEADGMDK-AGGYIKSIPIAT-HD-TPNATFLFRNTTNYQLDHHQQQQQQQQ 60
           M+LANS++ E DGM+K  GGY+KS+ I   HD  PN  F+FR+ TNYQL   QQQ     
Sbjct: 1   MSLANSAIQEVDGMEKNGGGYLKSLAIGKGHDQNPNGDFVFRDATNYQLGLQQQQ----- 60

Query: 61  QLPHSLINFKCGIDSIFHK-NNESLLSFEPQGVCQD--TYNWDDHQRLMEDPNCFQTAT- 120
               SLINF        HK NNESLLSFE QG+CQ   TYNWDD +R+MEDPNCFQTAT 
Sbjct: 61  ----SLINFG-------HKMNNESLLSFEAQGICQLDLTYNWDDQERVMEDPNCFQTATS 120

Query: 121 -NGYSSPKE---NKNGD-GSVYDWLYSEAS-GVSDAIQEAEGAHEVA-NQKRPHM-GESS 180
            N YS  K+   NKNG+ GSVY+WLY E++   SD+IQ+AEG  E+  N KR H  GESS
Sbjct: 121 HNNYSPSKDHHHNKNGNSGSVYEWLYCESTTDFSDSIQDAEGTQEIVPNHKRSHSTGESS 180

Query: 181 GSVSKKQCTAAAAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSK------ 240
           GSV KKQCTAA  KKQKPKS+TAKDPQSIAAKNRRERISERLKILQELVPNGSK      
Sbjct: 181 GSVCKKQCTAAP-KKQKPKSATAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTM 240

Query: 241 ----------------ILATDEFWPVQGGKAPDISQVKEAIDAILSSQRERSSSSNSQK 263
                           ILATDEFWPVQGGKAPDISQVKEAID ILSSQRERSSSSN++K
Sbjct: 241 LEKAISYVKFLQLQVKILATDEFWPVQGGKAPDISQVKEAIDVILSSQRERSSSSNTEK 282

[Close]

BLAST of CmoCh04G024010 vs. NCBI nr
Match: gi|567876091|ref|XP_006430635.1| (hypothetical protein CICLE_v10013420mg [Citrus clementina])

HSP 1 Score: 196.8 bits (499), Expect = 4.6e-47
Identity = 138/285 (48.42%), Postives = 169/285 (59.30%), Query Frame = 1


Query: 13  GMDKAGGYIKSIPIATHDTPNATFLFRNTTNYQLDHHQQQQQQQQQLPHSLINFKCGIDS 72
           G  KA G++KSI I+   +P++     N+  Y+  + ++ +        SLINFK G D 
Sbjct: 22  GSKKAPGFVKSIGISNTSSPSSA----NSNGYEFHNAEEARD-------SLINFKSGHDH 81

Query: 73  IFHKNNESLLSFEPQGVCQDTYN-WD------------DHQRLMEDPNCFQTATN-GYSS 132
             H N  +LLSFE      D Y+ W+            DH RLMED NCF TA+N G+  
Sbjct: 82  FMHANASNLLSFEQNETKDDEYSMWEGNFNQINQKYSSDH-RLMEDFNCFDTASNYGFMI 141

Query: 133 PKENKNGDGSVYDWLYSEASGVSDAIQEAEGAHEVANQKRPHMGESSGSVSKKQCTAAAA 192
               ++  G   DWLY+EA+ V+D I E+      ++ KRP+ GES  +V KKQC  AA 
Sbjct: 142 NNSARDCHG---DWLYTEATAVTDTILESGSQDASSSLKRPNTGESMQAV-KKQCAIAAT 201

Query: 193 KKQKPKSSTA---KDPQSIAAKNRRERISERLKILQELVPNGSKI--------------- 252
           KK   K  T+   KDPQSIAAKNRRERISERLKILQELVPNGSK+               
Sbjct: 202 KKTNNKQKTSAPPKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKF 261

Query: 253 -------LATDEFWPVQGGKAPDISQVKEAIDAILSSQRERSSSS 259
                  LATDEFWPVQGGKAPDISQV+EAIDAILSSQR+RSSSS
Sbjct: 262 LQLQVKVLATDEFWPVQGGKAPDISQVREAIDAILSSQRDRSSSS 290

[Close]

BLAST of CmoCh04G024010 vs. NCBI nr
Match: gi|641844201|gb|KDO63095.1| (hypothetical protein CISIN_1g038918mg [Citrus sinensis])

HSP 1 Score: 195.7 bits (496), Expect = 1.0e-46
Identity = 137/285 (48.07%), Postives = 169/285 (59.30%), Query Frame = 1


Query: 13  GMDKAGGYIKSIPIATHDTPNATFLFRNTTNYQLDHHQQQQQQQQQLPHSLINFKCGIDS 72
           G  KA G++KSI I+   +P++     N+  Y+  + ++ +        SLINFK G D 
Sbjct: 22  GSKKAPGFVKSIGISNTSSPSSA----NSNGYEFHNAEEARD-------SLINFKSGHDH 81

Query: 73  IFHKNNESLLSFEPQGVCQDTYN-WD------------DHQRLMEDPNCFQTATN-GYSS 132
             H N  +LLSFE      D Y+ W+            DH RLMED NCF TA+N G+  
Sbjct: 82  FMHANASNLLSFEQNETKDDEYSMWEGNFNQINQKYSSDH-RLMEDFNCFDTASNYGFMI 141

Query: 133 PKENKNGDGSVYDWLYSEASGVSDAIQEAEGAHEVANQKRPHMGESSGSVSKKQCTAAAA 192
               ++  G   DWLY+EA+ V+D I E+      ++ KRP+ G+S  +V KKQC  AA 
Sbjct: 142 NNSARDCHG---DWLYTEATAVTDTILESGSQDASSSLKRPNTGDSMQAV-KKQCAIAAT 201

Query: 193 KKQKPKSSTA---KDPQSIAAKNRRERISERLKILQELVPNGSKI--------------- 252
           KK   K  T+   KDPQSIAAKNRRERISERLKILQELVPNGSK+               
Sbjct: 202 KKTNNKQKTSAPPKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKF 261

Query: 253 -------LATDEFWPVQGGKAPDISQVKEAIDAILSSQRERSSSS 259
                  LATDEFWPVQGGKAPDISQV+EAIDAILSSQR+RSSSS
Sbjct: 262 LQLQVKVLATDEFWPVQGGKAPDISQVREAIDAILSSQRDRSSSS 290

[Close]

BLAST of CmoCh04G024010 vs. NCBI nr
Match: gi|645246158|ref|XP_008229223.1| (PREDICTED: putative transcription factor bHLH086 [Prunus mume])

HSP 1 Score: 194.1 bits (492), Expect = 3.0e-46
Identity = 137/286 (47.90%), Postives = 162/286 (56.64%), Query Frame = 1


Query: 28  THDTPNAT------FLFRNTTNYQLDHHQQQQQQQQQLPHSLINFKCGIDSIFHKNNESL 87
           TH++P  +      F+FR T+NY    HQ        + HS+INFK    + F +N+ESL
Sbjct: 15  THESPQVSSDLSNGFVFRATSNYHQPDHQ--------VAHSVINFKSSGYNSFFQNSESL 74

Query: 88  LSFEPQGV---------------CQD-----TYNWD-----DHQRLMEDPNCFQTATNGY 147
           LSFE                   C D      Y W+        RL  D NCFQT +N  
Sbjct: 75  LSFEKNSKQNILKTRNDKDEHFNCDDDLHHGNYQWNHTASVSDPRLSGDFNCFQTRSNYS 134

Query: 148 SSPKENKNGDGS-VYDWLYSEASGVSDAIQEAEGAHEVANQKRPHMGESSGSVSKKQCTA 207
           S P  +K+  G   Y WLYSEA+ V+D  QE E   +    KRPH GE+   + KKQCT 
Sbjct: 135 SMPNTSKDDHGDEAYGWLYSEATVVADGFQEPES--QEGFHKRPHTGEAMQPL-KKQCTN 194

Query: 208 AAAKKQKPKSST-AKDPQSIAAKNRRERISERLKILQELVPNGSKI-------------- 259
           +  KK KPKSS+  KDPQSIAAKNRRERISERL+ILQELVPNG K+              
Sbjct: 195 SGTKKPKPKSSSPTKDPQSIAAKNRRERISERLRILQELVPNGCKVDLVTMLEKAISYVK 254

The following BLAST results are available for this feature:

BLAST of CmoCh04G024010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BH086_ARATH	9.7e-29	46.46	Putative transcription factor bHLH086 OS=Arabidopsis thaliana GN=BHLH86 PE=3 SV=...	[more]
BH083_ARATH	2.4e-27	50.61	Transcription factor bHLH83 OS=Arabidopsis thaliana GN=BHLH83 PE=2 SV=1	[more]

BLAST of CmoCh04G024010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN55_CUCSA	1.3e-80	65.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G420280 PE=4 SV=1	[more]
V4SXU2_9ROSI	3.2e-47	48.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013420mg PE=4 SV=1	[more]
A0A067FAC6_CITSI	7.2e-47	48.07	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038918mg PE=4 SV=1	[more]
B9T2K1_RICCO	1.5e-44	49.81	DNA binding protein, putative OS=Ricinus communis GN=RCOM_0285440 PE=4 SV=1	[more]
A0A061EH34_THECC	2.6e-44	44.30	Rhd six-like 1, putative OS=Theobroma cacao GN=TCM_019210 PE=4 SV=1	[more]

BLAST of CmoCh04G024010 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37800.1	5.5e-30	46.46	RHD SIX-LIKE 1	[more]
AT1G66470.1	1.3e-28	50.61	ROOT HAIR DEFECTIVE6	[more]
AT5G67060.1	2.5e-06	69.70	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G50330.1	2.5e-06	69.70	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of CmoCh04G024010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445206\|ref\|XP_004140364.1\|	1.9e-80	65.45	PREDICTED: putative transcription factor bHLH086 [Cucumis sativus]	[more]
gi\|659121136\|ref\|XP_008460515.1\|	1.3e-76	63.88	PREDICTED: putative transcription factor bHLH086 [Cucumis melo]	[more]
gi\|567876091\|ref\|XP_006430635.1\|	4.6e-47	48.42	hypothetical protein CICLE_v10013420mg [Citrus clementina]	[more]
gi\|641844201\|gb\|KDO63095.1\|	1.0e-46	48.07	hypothetical protein CISIN_1g038918mg [Citrus sinensis]	[more]
gi\|645246158\|ref\|XP_008229223.1\|	3.0e-46	47.90	PREDICTED: putative transcription factor bHLH086 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G024010.1	CmoCh04G024010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 184..253 score: 1.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 187..250 score: 11
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 185..254 score: 2.0
None	No IPR available	PANTHER	PTHR16223	FAMILY NOT NAMED	coord: 51..253 score: 1.9
None	No IPR available	PANTHER	PTHR16223:SF19	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 51..253 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G024010	Cucsa.006340	Cucumber (Gy14) v1	cgycmoB0116
CmoCh04G024010	CmaCh15G007400	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G024010	CmaCh04G022970	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G024010	Cla019764	Watermelon (97103) v1	cmowmB667
CmoCh04G024010	Csa5G420280	Cucumber (Chinese Long) v2	cmocuB740
CmoCh04G024010	MELO3C022846	Melon (DHL92) v3.5.1	cmomeB626
CmoCh04G024010	ClCG03G008680	Watermelon (Charleston Gray)	cmowcgB647
CmoCh04G024010	CSPI05G14960	Wild cucumber (PI 183967)	cmocpiB749
CmoCh04G024010	Lsi09G009330	Bottle gourd (USVL1VR-Ls)	cmolsiB610
CmoCh04G024010	Cp4.1LG13g05200	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G024010	Cp4.1LG01g20040	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G024010	MELO3C022846.2	Melon (DHL92) v3.6.1	cmomedB715
CmoCh04G024010	CsaV3_5G024030	Cucumber (Chinese Long) v3	cmocucB0876
CmoCh04G024010	Cla97C03G059930	Watermelon (97103) v2	cmowmbB719
CmoCh04G024010	Bhi12G001071	Wax gourd	cmowgoB0822
CmoCh04G024010	CsGy5G014810	Cucumber (Gy14) v2	cgybcmoB654
CmoCh04G024010	Carg18266	Silver-seed gourd	carcmoB0716

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G024010	CmoCh15G007640	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G024010	Silver-seed gourd	carcmoB1121