Cp4.1LG12g09820 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g09820
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBacterial trigger factor protein
LocationCp4.1LG12 : 5368907 .. 5374806 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTTAAACTTGGTAGAAAATTTGAGCGGTATATCTGGTTGTACCGAAAACCACGGTCGGAAAGAAACGCTGGTTGAGTTCGGTGAAGTGGATAAGAGCGACGATGCAAATAGCCGCTACGAACTTCTTTCTTTCGGCAAACCCCAAGGTGAATCATTCCTTCTGTCCGGCTCTATTTGTGTTTATCTCCCATTTACCGATCAACTTTCAGAGAATCATATTCCGTATTCAATGATAAATAGATGCAATTTTTTACTTTGTTATTGGACTATATATTGAGTGAGCAAGGAAGAACAGAGGTAGCGAACAATATAACACAAAGTATTATGTATTGACCAACTACAATCTGTGCTAACAGAGCTGTTGGTTTTCTTCTGGGCAAAATATTTGAAGAGGAAAAAATCCCACATGGGAAATATCGTCTAAAGTGATGGATTTCAAGTGTTATGTAGTGGTTTATTGCTACATTTTTGTCGGGTCTTAGTTAGAAACACTCTTATGTCTTGGTTTCCTATGCTAACTAAAGTTAAATTCCTTTGTGTTGTTTTGTTTGAGAGGGAATTTTGAGGGAGTGTTTTTGTAATTGGGGTTGGAGGGAGAATTCTATTTGATGATAATTCTTATGGAGTTTCCTTTTCGGTGGGCCGGGATTTGTTCTCTAGATTGGGAGTTTTTCACTTCAGTTCTCGTGTTCTTTGATTGTTCTTATTACTGAAGTTTTTTTTCTTCTTGTTCCTGTTCTGTGCTGATTTTTGGGACGTTCCATAAAAGTAAATGATGGGAATGTTGTTGTTTGGAGAGAAAGGAGGTTCAACATTGGTATTTGGGATATTTGGCCCCTGGTGGTTGACTGGCTTGCAGGTGTTCGTGTTAAGGTTTACAATATTTGCTTGAAGTAGGAGTATTTGTGTGATAAGTTTTTTGTTAAAAACCAAAAGCATGCTTTTAAGTCATCGAAGTTTGGAATATCCCTTCCGGTACCAAGGGCAGCCGTAAAAGCATCATATTCAACACTAATACCATTCAACAAATATTCAACCAAAAGTTCATTAATTATATGTTCACCAGGAATTGAGTTTTTTTACATATGAAGTCTTTAGATAGACTGGTTTGATCTTCAAGCTTCTTATTATGAATATCTCCTCTCGGGTTCGGTGTCTAGCTTGAGAAGTATTGTTATACAATGTGCTGGGCACACCCCATTTAGCATTCATCATCATACTTCACTATTCTCGCTAGCATCGTATCAGTCAGAAAAATAAAGCCAACTCATAGGCCATGACTGAACGATTATAACTTGGATACAATTTACTTCCATCTATATGCTTTCTAGATTGTTTGCAACAATAGCGCTTATTTTTTTGGGGATACGAAACGGAGTATATTACTGAGAAAAAAGAGAAAAACAGCCTAGGGGTTGGGGAAGAGGGATTCCGCTCCCAACAACTACTAAAAGAGATATTTCCAATTGTAAAGGAGCATGGANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATCAACATGAGAGGACTTATCTTCCAAAGTTCTTTGACTCCTTCCCGACCAAATATGCCATAGTAAGGCCCATAGCCACAAGGTTCCGCAAGACTTTCATCCTCTTTGCCAACTTCCTACCAGATAAAACTTTAAGGAGTCAATCATCCACTTGTTCGGACAGCAAGAAATGCCAATAACTTCAAACAGAAAAGCCCAACCTCTAGAGGTGACAGTGAAGAAAAAGATGAACAATAGATTCTTTGAGTTTGACAGTCAGAATGATTTGAAGATGAAAATGGTTTAAGGTAATGGACAATAACCGGATTTTGGTTTGGATTTGTGTCACTTGGTTGAGTTGTGGGGTGGGTGCTTGGTCCTCCTCAGGTTGTAGGAAGAACAGATGGAGCAGAACAGGTCCCACTAATTGAAGATGACAACATTTGACACAAGCCGTTAGCAAATGTTTTGATACTCTAAACGCTATGGATTGATCAAGGAAGAAGAAATGCGGCAACAGAGAGTAGTAGAAGAAAGCAGTAGTGTAAGGCTGTGTAATAGCTCAACAACTTTCTATTTACCTCATAATTATACTGAAGTAAAGAAAGCCTAGCATTACCACCTCACACCTAAGTAATGAACTGAAATAAAAGAACATGACATCAGACATCTAGTATAGTGACATGCACAGTCGTCGAAGGCCAGACATAGGAAATAATATCATGCACCAAGAATTATCTGGTCCCATATTTTGTGAAGTTAATTTCATTCTTATTCAACCTTCTTTCTTAATTGTAGGCTATATATCATAAGCAGACAGCAGATTACTTTACTCCAAATCTCACCAGCAAAAGCGTGTCTTTTCCTAGTCAAATGGGATATGGCAGCAGAAAAATTTCTGTGAGGTAATTTCTATTTAATTTTACCAAATTATATGTTCCAAAGAGTTGTATAAGCCAAATTATGAAAGTTAGTCGTGTCCCAGAGTAGGAAGACTTCAGCATCTAATTGATTTAATCTGAACTTTTCTTTTATATGATGAAGCTGATTGGTTGACTATCGAAGTTTACGAAACATATAAACTCATAAAAGACTTTCTTTACTAAGAAATTTTGACTTCTAATCTGGATATATGAATGCTCACGATTGCCTCATTTTTCTCAATTGGATGCTTCACAACCTGTCCTGCTATTTAGTCACTTCAAAATAGAAAGTTAACATGGAGTATCCCACCAATTCGCCATCAAGATCATAACTAAATTTTGGATGTAATTTTTCTTTGTGGATGATCGAACCAACTTTTATCTAAAGTAAACTACAAAAAAGGTCCACAAAAAGCAGAAACATACTAGAACATAATTACAAGAACAAATGGCAACTGGTTGTTATCAAATTTTTGGATAGGAAGTTACCATTTGCTTTTTGTTAAATCTACTAAAACCCGAAAAAGATAGGCCATGGATTTAATATTTTATCGATTCAGAAACTAGCACGCTATCTAGTAAGTGAGTTATCAATAATAATTAGGGAGGAAATAATATTTGCTTCTCTATGGTTGAGGAGGACCTTCAGTGTGCAGTTCACTTGGAGGAGAGATTGCCTCTCTATGATTGAGGCTGTCCTCTTGAGTTTGCCCTTTTGTAGAATTTCCACGTGTTGTGGCAAGCGAGCTTCTTTGCTATTGCTTGAGATATTTGATTTGAGAGAATAATAGGATCTTTAGAGAGGTTGAAAGATCAAGGGAGGAGGTTTCGGGAGGGGGATCGGTTTAATGCCTTCTTGTGGACATCTGTTTATAGTCTCCTTTGTAATTATGGTATTGGCATGATTTTGTTGGATTGAAACCTTATTTTTAGTTAGTTGGGCTCCTTTTATGTGGGCTGTTTCTTTGTATGCCTTTTTCATTTTTTCTCAAACTATCATGCCTACGTTCCTAACTATAAAAATTATTTTGTTCACTTTACAGTAAAAGTAACAGATATCTTCCAGCTGCATGTGCTGCATTATCAGGTTAAAATGCTCGTCTCTTCGAAGAACAATTTCAATATTTTCCAATTATACGAGGACTTTGTTAGCTAAAATCTTTAATTCTATTGTGAGCAGAAGATGTGAGTGTTTCTTCTTCTCAGTTTGAAGACTTCTCTGTCACTAAAGCTACTAATATCAATGAGAATAAAGAACTAAAGGTATGAAATACGGTGAGTTTTATTCTTAGGTTCCTTATGTCTATAATCCTCAGATTACTATCTTTCAAATATTTTGTTTGTTGTTACTTCACTTAGACATTCAATTTAGTCTCTAAAAACATGTCTAGTCCTTGCCATTGATTATCCATTAGTTAGTTTAAAAGAATTGAAAAAAATCATAAAAAACTAATGGTAATGTTTGTAAGTTCAATGCAGATTCAGGAACCATGTTTTATTTATTTATTTGATTGATTTTTCTTGAGTTTGCAACCAGATTTGTATTGAGGTCTCTGGAGCTAAAACACGAGCAATTTTCGACAATGTGTTCAATGAAATGGTTGATAAAGCGCAGCCTATTCCCGGTTTTAGAAGAGCGAAAGGAGGTAATATCCAGAGGCGTGTTTCTTATTTGAGGTGCTCATGGCTTTCATTTTTGTTTTATCAAAACCATTCTAATAATGTTGCTAGCACCATTGTTTTCGGCTGAGCTGTTGTATATTTTACGCGCATGGTTAAGGTTACAGGTGATTGTGTTGTCTTCATGTTAGAGAAATGGAAACGTTACTAAACGACTCCTAAAAATCAGAAAATCGCTTTCTTTAATTCGTTTCTCACAATGTTTTCATTTTTCTTATCCTTTCCAATTCATTTCATTGGACTTGAATAACGCTGTTCTTCATCGAATGTCAGGAAAGACGCCGAATGTAAGTTTTCTTTCCTTTCAATCTCTTGGTTTTCAATAAGCAACTATTGACTATGTCTGAATAATGATAAGTTCATCATTTGTTATCGACAGATACCTCGGGAAATTCTATTAGAGATACTCGGACCTTCGAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCATATGTGGAAAAGGTAAAGATATAATTGCCATTTTTATATTCTGGTTTTGAGCTGGGGTTATCTTAATCTTAAAATATTAGGCAATTCGAATCCATTTATATGTTTTGCCCTGTTCTATATGATGAATTAATAACTCAAGTCTAGAAATTGTTTTAGCATACGGAGTGGAGCCTTCTGCAATCTACGTTAAATAGTGAAAATTTTTCCACTTCATAGTAGATATTTTCTGTACATAGATACAAATATTATTGTGAGATCTCACCTTGGTTGGAGAGGAGAACGGAACCTTCTTTATAAGAGTATGAAAACCTCTCCCTAGCAGACGCGTTTTAACAACCTTGAGGGGAAGCCCGAAAGGGAAAACCCAAAGAGGACAATATCTGCTAGTGGTGGGCTTGGGCCATTACAAATGGTATCACAGGCAGACACCAGGCGATGTGCTAGCGAGGAGGCTGAACCCGAATGGGGGATGGACACGAGGCGGTGTTCCAGCAAGGACTTTGTGCCCCGTAGGGGAGTGGATTGGAGGATCCTACATCGATTGGAGAAGGGAACGAGTGCCAGTGAGGACGCTAGCCCCGAAGGGAGGTGGATTGTGAGATCCTATATCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGAGTGTGGAAACCTCTCTCTAGGACAATATCTTGAGAGTAAATCCAAAAGGGAAAGTCCAAAGAGGACAATATTTGCTAGTGGTGGGCTTGAGCCGTTACAAATATGGACACAGTTCATAGTTTGGTCATCTTCATCCATAGTAGTGTTGAGCCTCATCGATAGAGGTTGTAAAGAGGATTTAAAAGCAATTAAAACATCCTCTTCTTTCTCTTTTCTATGGTAATTCATTGATTATTCTATGATAGTTTTTTTAGATTTTCATATCGAAATAGGAACTGGACCAAAAACGATATCATATATCAATGCGATTGTATAATGTGAATAGAACTGACTGGAATATAATAGAATAGAACTTTTCCCATTATAAAAAAACTAGAAGTGAATTCATTTGCTTAACGTTGGAAGTGCTGTTCATCTTAGTGTTTTTCTCTATTTTACCAATGAAGCAGGAAGCTCTAAAAGTGGGCAAAGACCTGAGAATAGAGCAAAGCTATGAGGATCTTGAAGAACAATTTGAACCAGATGAAAAGTTCTTTTTTGATGCCATTATTCAGCTCAACCAAACAAACTGAATTATTGAATTACATTGTAAGATACTTTCACCCTGAATTTTGATTAATTCAAAGTGTTTTTTTTAGCATTTCCTACACCTAATTTAGTGTTTACTCAAAAATTTCGAGCTTC

mRNA sequence

AAGTTAAACTTGGTAGAAAATTTGAGCGGTATATCTGGTTGTACCGAAAACCACGGTCGGAAAGAAACGCTGGTTGAGTTCGGTGAAGTGGATAAGAGCGACGATGCAAATAGCCGCTACGAACTTCTTTCTTTCGGCAAACCCCAAGTAAATGATGGGAATGTTGTTGTTTGGAGAGAAAGGAGGTTCAACATTGGTATTTGGGATATTTGGCCCCTGGTGGTTGACTGGCTTGCAGGTGTTCGTGTTAAGGCTATATATCATAAGCAGACAGCAGATTACTTTACTCCAAATCTCACCAGCAAAAGCGTGTCTTTTCCTAGTCAAATGGGATATGGCAGCAGAAAAATTTCTGTGAGATATCTTCCAGCTGCATGTGCTGCATTATCAGAAGATGTGAGTGTTTCTTCTTCTCAGTTTGAAGACTTCTCTGTCACTAAAGCTACTAATATCAATGAGAATAAAGAACTAAAGATTTGTATTGAGGTCTCTGGAGCTAAAACACGAGCAATTTTCGACAATGTGTTCAATGAAATGGTTGATAAAGCGCAGCCTATTCCCGGTTTTAGAAGAGCGAAAGGAGGAAAGACGCCGAATATACCTCGGGAAATTCTATTAGAGATACTCGGACCTTCGAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCATATGTGGAAAAGGAAGCTCTAAAAGTGGGCAAAGACCTGAGAATAGAGCAAAGCTATGAGGATCTTGAAGAACAATTTGAACCAGATGAAAAGTTCTTTTTTGATGCCATTATTCAGCTCAACCAAACAAACTGAATTATTGAATTACATTGTAAGATACTTTCACCCTGAATTTTGATTAATTCAAAGTGTTTTTTTTAGCATTTCCTACACCTAATTTAGTGTTTACTCAAAAATTTCGAGCTTC

Coding sequence (CDS)

AAGTTAAACTTGGTAGAAAATTTGAGCGGTATATCTGGTTGTACCGAAAACCACGGTCGGAAAGAAACGCTGGTTGAGTTCGGTGAAGTGGATAAGAGCGACGATGCAAATAGCCGCTACGAACTTCTTTCTTTCGGCAAACCCCAAGTAAATGATGGGAATGTTGTTGTTTGGAGAGAAAGGAGGTTCAACATTGGTATTTGGGATATTTGGCCCCTGGTGGTTGACTGGCTTGCAGGTGTTCGTGTTAAGGCTATATATCATAAGCAGACAGCAGATTACTTTACTCCAAATCTCACCAGCAAAAGCGTGTCTTTTCCTAGTCAAATGGGATATGGCAGCAGAAAAATTTCTGTGAGATATCTTCCAGCTGCATGTGCTGCATTATCAGAAGATGTGAGTGTTTCTTCTTCTCAGTTTGAAGACTTCTCTGTCACTAAAGCTACTAATATCAATGAGAATAAAGAACTAAAGATTTGTATTGAGGTCTCTGGAGCTAAAACACGAGCAATTTTCGACAATGTGTTCAATGAAATGGTTGATAAAGCGCAGCCTATTCCCGGTTTTAGAAGAGCGAAAGGAGGAAAGACGCCGAATATACCTCGGGAAATTCTATTAGAGATACTCGGACCTTCGAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCATATGTGGAAAAGGAAGCTCTAAAAGTGGGCAAAGACCTGAGAATAGAGCAAAGCTATGAGGATCTTGAAGAACAATTTGAACCAGATGAAAAGTTCTTTTTTGATGCCATTATTCAGCTCAACCAAACAAACTGA

Protein sequence

KLNLVENLSGISGCTENHGRKETLVEFGEVDKSDDANSRYELLSFGKPQVNDGNVVVWRERRFNIGIWDIWPLVVDWLAGVRVKAIYHKQTADYFTPNLTSKSVSFPSQMGYGSRKISVRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRRAKGGKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLEEQFEPDEKFFFDAIIQLNQTN
Homology
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BLAST of Cp4.1LG12g09820 vs. Swiss-Prot
Match: TIG_CYAP8 (Trigger factor OS=Cyanothece sp. (strain PCC 8801) GN=tig PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-07
Identity = 32/119 (26.89%), Postives = 66/119 (55.46%), Query Frame = 1 

Query: 154 NKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRRAKGGKTPNIPREILLEILGPSK 213
           + ++ + IE+S   ++  ++   N +   A  IPGFR+ K      +PR+ILL+ +G   
Sbjct: 10  DSQIGLEIEISAEASKKAYETKVNTLARTAN-IPGFRKGK------VPRQILLQRIGTEY 69

Query: 214 VYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLEEQFEPDEKFFFDAIIQLNQT 273
           +    ++E+I  ++ A +++E+L+   D  ++  +++L +QF+P E   F A I +  T
Sbjct: 70  IKATTLQELIEDSLKAAIKQESLESIGDFELKSKFDELVQQFKPGEPLTFSAAIDVPPT 121

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BLAST of Cp4.1LG12g09820 vs. Swiss-Prot
Match: TIG_THEEB (Trigger factor OS=Thermosynechococcus elongatus (strain BP-1) GN=tig PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-06
Identity = 34/115 (29.57%), Postives = 60/115 (52.17%), Query Frame = 1 

Query: 149 TNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRRAKGGKTPNIPREILLEI 208
           T    N +L   IEVSG  ++ +++ V N+++   Q +PGFR+ K       PR+++L+ 
Sbjct: 3   TEPRSNSQLLATIEVSGTHSQQVYNQVVNDLLRHTQ-VPGFRKGKA------PRQLVLQQ 62

Query: 209 LGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLEEQFEPDEKFFF 264
           LG  ++    ++++I   V   VEK  +    +L +     +L +QF P E F F
Sbjct: 63  LGRERLRYLAMEKLIEDAVKTAVEKNNIPYLGNLELAGGITELLDQFHPGENFSF 110

[Close]
BLAST of Cp4.1LG12g09820 vs. Swiss-Prot
Match: TIG_SYNP2 (Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=tig PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.2e-06
Identity = 28/112 (25.00%), Postives = 65/112 (58.04%), Query Frame = 1 

Query: 161 IEVSGAKTRAIFDNVFNEMVDKAQPIPGFRRAKGGKTPNIPREILLEILGPSKVYKQVIK 220
           IEV    T+  +D+   ++  +   +PGFR+ K      +P++IL++ LGP+++   V++
Sbjct: 17  IEVPADVTQKAYDDTVRKLA-RTVNLPGFRKGK------VPKQILIQRLGPNRIKASVLE 76

Query: 221 EVINSTVAAYVEKEALKVGKDLRIEQSYEDLEEQFEPDEKFFFDAIIQLNQT 273
           ++I+ ++ A + +E ++   + +++ S++DL   ++P E   F A + +  T
Sbjct: 77  DLIDDSLKAAIAQENIEALGNFQLKSSFDDLISAYKPGEASSFKAAVDVPAT 121

[Close]
BLAST of Cp4.1LG12g09820 vs. Swiss-Prot
Match: TIG_GLOVI (Trigger factor OS=Gloeobacter violaceus (strain PCC 7421) GN=tig PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-06
Identity = 28/114 (24.56%), Postives = 66/114 (57.89%), Query Frame = 1 

Query: 156 ELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRRAKGGKTPNIPREILLEILGPSKVY 215
           ++ + +EV G K++  ++ +  + +  A+ IPGFR  K       PR+++L+  G  ++ 
Sbjct: 12  QMGLNVEVEGEKSKQAYEKLVRDTMRTAR-IPGFRPGKA------PRQLVLQFYGKERLR 71

Query: 216 KQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLEEQFEPDEKFFFDAIIQL 270
            Q ++ +I+S++   +E+E++    +L++  S+E+L  +++P E   F A + +
Sbjct: 72  AQALENLIDSSLKEAIEQESIASLGNLQLRDSFEELLGRYQPGEPLSFKAAVDV 118

[Close]
BLAST of Cp4.1LG12g09820 vs. TrEMBL
Match: A0A0A0KBW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G086150 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.6e-81
Identity = 162/202 (80.20%), Postives = 176/202 (87.13%), Query Frame = 1 

Query: 76  DWLAGVRVKAIYHKQTADYFTPNLTSKSVSFPSQMGYGSRKISV----RYLPAACAALSE 135
           ++   V  KAIYHKQT DYFTPNLT   VSFPSQ+ YGSRKIS+    RYLPAACA LSE
Sbjct: 7   NFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAACAVLSE 66

Query: 136 DVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRR 195
           +VSVSSSQFEDFSVT  TN  ENKELKI +EVSGAKTRAIF+ VF+ MV +AQPIPGFRR
Sbjct: 67  NVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRR 126

Query: 196 AKGGKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDL 255
            KGGKTPNIPR+ILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRI+QSYEDL
Sbjct: 127 VKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDL 186

Query: 256 EEQFEPDEKFFFDAIIQLNQTN 274
           E+QFEPDE FFFDAIIQL ++N
Sbjct: 187 EDQFEPDENFFFDAIIQLKESN 208

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BLAST of Cp4.1LG12g09820 vs. TrEMBL
Match: U5FVR2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12910g PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.6e-57
Identity = 125/199 (62.81%), Postives = 154/199 (77.39%), Query Frame = 1 

Query: 80  GVRVKAIYHKQTADYFTPNLTSKSVSFPSQM-----GYGSRKISVRYLP-AACAALSEDV 139
           G+ +K I HK T + FTPNLT K   F  Q+     G+  R+    + P AA  + +EDV
Sbjct: 12  GLNLKLISHKHTVNVFTPNLTRKIPCFSHQVRCGAQGFWRRENGRCFTPVAAVVSAAEDV 71

Query: 140 SVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRRAK 199
            VSSS+F+D +V   T+ NE++ELKI +EVSGAKTRAIF++VF +MV  AQPIPGFRR K
Sbjct: 72  EVSSSRFKDCTVM-ITSTNEDQELKIRVEVSGAKTRAIFEDVFKKMVTAAQPIPGFRRVK 131

Query: 200 GGKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLEE 259
           GGKTP+IPR+ILLE+LGPSKVYK+VIK+VINSTVA YV+KE LKV KDLR+EQS+EDLE+
Sbjct: 132 GGKTPDIPRDILLEVLGPSKVYKEVIKKVINSTVAEYVDKEGLKVSKDLRVEQSFEDLED 191

Query: 260 QFEPDEKFFFDAIIQLNQT 273
            FEPDEKF FDA+IQL QT
Sbjct: 192 AFEPDEKFSFDAVIQLQQT 209

[Close]
BLAST of Cp4.1LG12g09820 vs. TrEMBL
Match: A0A061EIP8_THECC (Transport, ribosome-binding, bacterial, putative isoform 2 OS=Theobroma cacao GN=TCM_019901 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.8e-57
Identity = 129/196 (65.82%), Postives = 150/196 (76.53%), Query Frame = 1 

Query: 84  KAIYHKQTADYFTPNLTSKSVSFPSQMGYGSRKISVR----YLPAACAALS--EDVSVSS 143
           K I +KQ  D F PNL+     FP Q  Y + K   R    +L    A  S  EDV VSS
Sbjct: 15  KIISYKQVEDVFIPNLSCNRACFPPQKRYRALKYQGRERHVHLLTVHAVSSDLEDVGVSS 74

Query: 144 SQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRRAKGGKT 203
            QFEDF+VT A+ INEN+ELKI +E+SGAKTRAIFD+VF++MV  AQPIPGFRR KGGKT
Sbjct: 75  -QFEDFNVTTAS-INENRELKISVEISGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKT 134

Query: 204 PNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLEEQFEP 263
           PNIPR+ILLE+LG SKVYKQVI +VINSTVA YVEKE+L VGKDLR+EQS+EDLEE FEP
Sbjct: 135 PNIPRDILLEVLGASKVYKQVITKVINSTVAEYVEKESLAVGKDLRVEQSFEDLEEMFEP 194

Query: 264 DEKFFFDAIIQLNQTN 274
           DEKF FDA+I+L +TN
Sbjct: 195 DEKFRFDAVIKLQETN 208

[Close]
BLAST of Cp4.1LG12g09820 vs. TrEMBL
Match: D7T2D4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00410 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.7e-54
Identity = 123/198 (62.12%), Postives = 145/198 (73.23%), Query Frame = 1 

Query: 80  GVRVKAIYHKQTADYFTPNLTSKSVSFPSQMGYGSRKISVR----YLPAACAALS--EDV 139
           G+  K I+HKQT     PN  S       QM Y ++   VR    Y PA CA  S  +D 
Sbjct: 11  GLNPKMIHHKQTV---LPNFFSIRPCCSLQMKYNTQAFRVRAIHKYCPAVCAVSSGVKDP 70

Query: 140 SVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRRAK 199
            VSSSQFEDFSVT AT+    KELKI +E+SG KTR IFDNVF++MV  AQPIPGFRR K
Sbjct: 71  GVSSSQFEDFSVT-ATSTGNAKELKISVELSGVKTRTIFDNVFSKMVADAQPIPGFRRVK 130

Query: 200 GGKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLEE 259
           GGKTP+IPR+ILLE+LGPSKVY QVIK+VINSTVA YVEKE +KV KDLR+EQS+EDLE+
Sbjct: 131 GGKTPDIPRDILLEVLGPSKVYMQVIKKVINSTVAEYVEKEGIKVSKDLRVEQSFEDLED 190

Query: 260 QFEPDEKFFFDAIIQLNQ 272
            FEP E+F FDA++QL +
Sbjct: 191 AFEPGEEFRFDAVVQLQE 204

[Close]
BLAST of Cp4.1LG12g09820 vs. TrEMBL
Match: A0A061EIA3_THECC (Transport, ribosome-binding, bacterial, putative isoform 1 OS=Theobroma cacao GN=TCM_019901 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.8e-53
Identity = 129/218 (59.17%), Postives = 150/218 (68.81%), Query Frame = 1 

Query: 84  KAIYHKQTADYFTPNLTSKSVSFPSQMGYGSRKISVR----YLPAACAALS--EDVSVSS 143
           K I +KQ  D F PNL+     FP Q  Y + K   R    +L    A  S  EDV VSS
Sbjct: 15  KIISYKQVEDVFIPNLSCNRACFPPQKRYRALKYQGRERHVHLLTVHAVSSDLEDVGVSS 74

Query: 144 SQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRRAKGGKT 203
            QFEDF+VT A+ INEN+ELKI +E+SGAKTRAIFD+VF++MV  AQPIPGFRR KGGKT
Sbjct: 75  -QFEDFNVTTAS-INENRELKISVEISGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKT 134

Query: 204 PNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEK----------------------EA 263
           PNIPR+ILLE+LG SKVYKQVI +VINSTVA YVEK                      E+
Sbjct: 135 PNIPRDILLEVLGASKVYKQVITKVINSTVAEYVEKQRLHRSRSGHLSECSCKHPDYEES 194

Query: 264 LKVGKDLRIEQSYEDLEEQFEPDEKFFFDAIIQLNQTN 274
           L VGKDLR+EQS+EDLEE FEPDEKF FDA+I+L +TN
Sbjct: 195 LAVGKDLRVEQSFEDLEEMFEPDEKFRFDAVIKLQETN 230

[Close]
BLAST of Cp4.1LG12g09820 vs. TAIR10
Match: AT2G30695.1 (AT2G30695.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 162.2 bits (409), Expect = 4.7e-40
Identity = 89/154 (57.79%), Postives = 112/154 (72.73%), Query Frame = 1 

Query: 120 RYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEM 179
           R   A CAA S DV  SS   E   +TK      N E+K+ ++VSG KT+ +F++VF +M
Sbjct: 49  RQFVAVCAAPS-DVETSSKD-ESVLITKVETETSN-EVKVHVQVSGEKTQTVFNHVFEKM 108

Query: 180 VDKAQPIPGFRRAKGGKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVG 239
           V  AQPIPGFRR KGGKTPNIP+++LLEILG SKVYKQVIK++INS +  YV++E LKVG
Sbjct: 109 VAAAQPIPGFRRVKGGKTPNIPKDVLLEILGYSKVYKQVIKKLINSAIEDYVKQEDLKVG 168

Query: 240 KDLRIEQSYEDLEEQFEPDEKFFFDAIIQLNQTN 274
           K+L + QSYEDLEE FEP E F FDA I+L + +
Sbjct: 169 KELTVVQSYEDLEETFEPGESFSFDATIKLQEAS 199

[Close]
BLAST of Cp4.1LG12g09820 vs. NCBI nr
Match: gi|449445672|ref|XP_004140596.1| (PREDICTED: uncharacterized protein LOC101211587 isoform X2 [Cucumis sativus])

HSP 1 Score: 310.8 bits (795), Expect = 2.3e-81
Identity = 162/202 (80.20%), Postives = 176/202 (87.13%), Query Frame = 1 

Query: 76  DWLAGVRVKAIYHKQTADYFTPNLTSKSVSFPSQMGYGSRKISV----RYLPAACAALSE 135
           ++   V  KAIYHKQT DYFTPNLT   VSFPSQ+ YGSRKIS+    RYLPAACA LSE
Sbjct: 7   NFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAACAVLSE 66

Query: 136 DVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRR 195
           +VSVSSSQFEDFSVT  TN  ENKELKI +EVSGAKTRAIF+ VF+ MV +AQPIPGFRR
Sbjct: 67  NVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRR 126

Query: 196 AKGGKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDL 255
            KGGKTPNIPR+ILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRI+QSYEDL
Sbjct: 127 VKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDL 186

Query: 256 EEQFEPDEKFFFDAIIQLNQTN 274
           E+QFEPDE FFFDAIIQL ++N
Sbjct: 187 EDQFEPDENFFFDAIIQLKESN 208

[Close]
BLAST of Cp4.1LG12g09820 vs. NCBI nr
Match: gi|659120111|ref|XP_008460019.1| (PREDICTED: uncharacterized protein LOC103498958 isoform X4 [Cucumis melo])

HSP 1 Score: 307.8 bits (787), Expect = 1.9e-80
Identity = 159/194 (81.96%), Postives = 172/194 (88.66%), Query Frame = 1 

Query: 84  KAIYHKQTADYFTPNLTSKSVSFPSQMGYGSRKISV----RYLPAACAALSEDVSVSSSQ 143
           KA+YHKQT DYFTPNLT  SVSFPSQ+ YGS KIS+    RYLPAACA LSE+ SVSSSQ
Sbjct: 15  KAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAACAVLSENASVSSSQ 74

Query: 144 FEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRRAKGGKTPN 203
           FEDFSVT  TN  ENKELKI +EVSG KTRAIF+ VF+ MV +AQPIPGFRR KGGKTPN
Sbjct: 75  FEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPN 134

Query: 204 IPREILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLEEQFEPDE 263
           IPR+ILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRI+QSYEDLE+QFEPDE
Sbjct: 135 IPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDLEDQFEPDE 194

Query: 264 KFFFDAIIQLNQTN 274
           KFFFDAIIQL ++N
Sbjct: 195 KFFFDAIIQLKESN 208

[Close]
BLAST of Cp4.1LG12g09820 vs. NCBI nr
Match: gi|778711466|ref|XP_011656735.1| (PREDICTED: uncharacterized protein LOC101211587 isoform X1 [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 5.7e-80
Identity = 162/203 (79.80%), Postives = 176/203 (86.70%), Query Frame = 1 

Query: 76  DWLAGVRVKAIYHKQTADYFTPNLTSKSVSFPSQMGYGSRKISV----RYLPAACAALSE 135
           ++   V  KAIYHKQT DYFTPNLT   VSFPSQ+ YGSRKIS+    RYLPAACA LSE
Sbjct: 7   NFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAACAVLSE 66

Query: 136 DVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRR 195
           +VSVSSSQFEDFSVT  TN  ENKELKI +EVSGAKTRAIF+ VF+ MV +AQPIPGFRR
Sbjct: 67  NVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRR 126

Query: 196 AKGGKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKDLRIEQSYED 255
            KGGKTPNIPR+ILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRI+QSYED
Sbjct: 127 VKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYED 186

Query: 256 LEEQFEPDEKFFFDAIIQLNQTN 274
           LE+QFEPDE FFFDAIIQL ++N
Sbjct: 187 LEDQFEPDENFFFDAIIQLKESN 209

[Close]
BLAST of Cp4.1LG12g09820 vs. NCBI nr
Match: gi|659120109|ref|XP_008460018.1| (PREDICTED: uncharacterized protein LOC103498958 isoform X3 [Cucumis melo])

HSP 1 Score: 303.1 bits (775), Expect = 4.8e-79
Identity = 159/195 (81.54%), Postives = 172/195 (88.21%), Query Frame = 1 

Query: 84  KAIYHKQTADYFTPNLTSKSVSFPSQMGYGSRKISV----RYLPAACAALSEDVSVSSSQ 143
           KA+YHKQT DYFTPNLT  SVSFPSQ+ YGS KIS+    RYLPAACA LSE+ SVSSSQ
Sbjct: 15  KAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAACAVLSENASVSSSQ 74

Query: 144 FEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRRAKGGKTPN 203
           FEDFSVT  TN  ENKELKI +EVSG KTRAIF+ VF+ MV +AQPIPGFRR KGGKTPN
Sbjct: 75  FEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPN 134

Query: 204 IPREILLEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKDLRIEQSYEDLEEQFEPD 263
           IPR+ILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRI+QSYEDLE+QFEPD
Sbjct: 135 IPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPD 194

Query: 264 EKFFFDAIIQLNQTN 274
           EKFFFDAIIQL ++N
Sbjct: 195 EKFFFDAIIQLKESN 209

[Close]
BLAST of Cp4.1LG12g09820 vs. NCBI nr
Match: gi|659120107|ref|XP_008460017.1| (PREDICTED: uncharacterized protein LOC103498958 isoform X2 [Cucumis melo])

HSP 1 Score: 302.0 bits (772), Expect = 1.1e-78
Identity = 159/198 (80.30%), Postives = 172/198 (86.87%), Query Frame = 1 

Query: 84  KAIYHKQTADYFTPNLTSKSVSFPSQMGYGSRKISV----RYLPAACAALSEDVSVSSSQ 143
           KA+YHKQT DYFTPNLT  SVSFPSQ+ YGS KIS+    RYLPAACA LSE+ SVSSSQ
Sbjct: 15  KAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAACAVLSENASVSSSQ 74

Query: 144 FEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRRAKGG---- 203
           FEDFSVT  TN  ENKELKI +EVSG KTRAIF+ VF+ MV +AQPIPGFRR KGG    
Sbjct: 75  FEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQPIPGFRRVKGGNIQR 134

Query: 204 KTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLEEQF 263
           KTPNIPR+ILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRI+QSYEDLE+QF
Sbjct: 135 KTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDLEDQF 194

Query: 264 EPDEKFFFDAIIQLNQTN 274
           EPDEKFFFDAIIQL ++N
Sbjct: 195 EPDEKFFFDAIIQLKESN 212

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g09820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TIG_CYAP82.2e-0726.89Trigger factor OS=Cyanothece sp. (strain PCC 8801) GN=tig PE=3 SV=1[more]
TIG_THEEB1.4e-0629.57Trigger factor OS=Thermosynechococcus elongatus (strain BP-1) GN=tig PE=3 SV=1[more]
TIG_SYNP23.2e-0625.00Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=tig... [more]
TIG_GLOVI4.1e-0624.56Trigger factor OS=Gloeobacter violaceus (strain PCC 7421) GN=tig PE=3 SV=1[more]
BLAST of Cp4.1LG12g09820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBW0_CUCSA1.6e-8180.20Uncharacterized protein OS=Cucumis sativus GN=Csa_6G086150 PE=4 SV=1[more]
U5FVR2_POPTR1.6e-5762.81Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12910g PE=4 SV=1[more]
A0A061EIP8_THECC2.8e-5765.82Transport, ribosome-binding, bacterial, putative isoform 2 OS=Theobroma cacao GN... [more]
D7T2D4_VITVI1.7e-5462.12Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00410 PE=4 SV=... [more]
A0A061EIA3_THECC1.8e-5359.17Transport, ribosome-binding, bacterial, putative isoform 1 OS=Theobroma cacao GN... [more]
BLAST of Cp4.1LG12g09820 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G30695.14.7e-4057.79 FUNCTIONS IN: molecular_function unknown[more]
BLAST of Cp4.1LG12g09820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445672|ref|XP_004140596.1|2.3e-8180.20PREDICTED: uncharacterized protein LOC101211587 isoform X2 [Cucumis sativus][more]
gi|659120111|ref|XP_008460019.1|1.9e-8081.96PREDICTED: uncharacterized protein LOC103498958 isoform X4 [Cucumis melo][more]
gi|778711466|ref|XP_011656735.1|5.7e-8079.80PREDICTED: uncharacterized protein LOC101211587 isoform X1 [Cucumis sativus][more]
gi|659120109|ref|XP_008460018.1|4.8e-7981.54PREDICTED: uncharacterized protein LOC103498958 isoform X3 [Cucumis melo][more]
gi|659120107|ref|XP_008460017.1|1.1e-7880.30PREDICTED: uncharacterized protein LOC103498958 isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO:0006457protein folding
Vocabulary: INTERPRO
TermDefinition
IPR008881Trigger_fac_ribosome-bd_bac
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019752 carboxylic acid metabolic process
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0022607 cellular component assembly
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0006457 protein folding
biological_process GO:0015031 protein transport
biological_process GO:0044711 single-organism biosynthetic process
biological_process GO:0006399 tRNA metabolic process
biological_process GO:0006364 rRNA processing
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0009658 chloroplast organization
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0010207 photosystem II assembly
cellular_component GO:0005575 cellular_component
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g09820.1Cp4.1LG12g09820.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008881Trigger factor, ribosome-binding, bacterialGENE3DG3DSA:3.30.70.1050coord: 152..267
score: 4.6
IPR008881Trigger factor, ribosome-binding, bacterialPFAMPF05697Trigger_Ncoord: 150..266
score: 1.3
IPR008881Trigger factor, ribosome-binding, bacterialunknownSSF102735Trigger factor ribosome-binding domaincoord: 152..267
score: 7.19
NoneNo IPR availablePANTHERPTHR30560TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASEcoord: 78..269
score: 2.0
NoneNo IPR availablePANTHERPTHR30560:SF4SUBFAMILY NOT NAMEDcoord: 78..269
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g09820CmaCh17G006150Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g09820CmaCh08G001870Cucurbita maxima (Rimu)cmacpeB910
Cp4.1LG12g09820CmoCh17G006000Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g09820CmoCh08G001930Cucurbita moschata (Rifu)cmocpeB846
Cp4.1LG12g09820Carg05017Silver-seed gourdcarcpeB0121
Cp4.1LG12g09820Carg18915Silver-seed gourdcarcpeB1075
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g09820Cucurbita pepo (Zucchini)cpecpeB175