CmoCh17G006000 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G006000
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transport, ribosome-binding, bacterial, putative isoform 2
Location	Cmo_Chr17 : 6376513 .. 6377945 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGAAAGACGCCGAATGTAAGTTTTTTTCCTTTCAATCTCTTGGTTTTCAATAAGCAACTATTGACTATGTCTGAATAATGACGAGTTCATCATTTGTTATCGACAGATACCTCGGGAAATTCTATTAGAGATACTCGGACCCTCGAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCATATGTGGAAAAGGTAGAGATATAATTGCCATTTTCATATTCTGGTTTCGAGCTGGGGTTATTTTGATCTTATAATCTTAATTAATTTGAATCCATTTACATGTTTTTCCCTGTCCTATATGATGAATTAATAACTCAAGTCTAGAAATTGTTTTAGCATACGGAGTGGAGCCTTCTGAAATCTACGTTAAAATAGTGAAAATGTTTTCACTTCATAGTAGATATTTTCTGCACATAGATACACATATTGTAAGATCCCACGTTGGTTGGGGAGGAGAACAAAATATTCTTTATAAGAGTGTGGAAACCTCTCTCTAGTAGACGCGTTTTAACAACCTTGAGGGGAGGCCCGAAAGGGAAAGTCCAAAGAGGACAAGATCTGCTAGTGGTGGGCTTGAGCCGTTACAAATGGTATCAAAGCCAGACACCAGGTGATGTGCCAGCGAAGAGGTTGAGCCCTAGAGGGGGATGGACACGAGGCGGTGTGCCAGCAAGGACGTTGGGCCCTGAAGGGGGGTGGATTGGAGGATCCCACATCGATTGGAGAAGGGAACGAGTGCGAGTGAGGATGCTGGGCCCCGAAGGGGGGTGGATTGTGAGATCCCATATCGATTGGGGAGGAGAATGAAACATTTTTTATAAGAGTGTGGAAACCTCTTCCTAGCAGACACGTTTTAAATACCTCGAGGGGAAACTAAAAAAGGAAAGTTCAAAAAGGACAATATTGGTTAGCGGTGGGTTTGGGTCGTTACAAATATGGACAGAGTTCATATTTTGATCATCTTCCTCCATAGTAGAGTTGAGCCGCATCGATAGAGGTAGTATAGAGGATTTAAAAGCAATTAAAACATCCTCTTCTTCTCTTTTTATGGTAATTCATTGATTATTCTATGACAACTTTTTTAGATTTTCATATCGAAATAGGAACTGGACCGAAAAAGATATCATATATCAATGCTATGATACAATGTGACTAGAACTGTGACATGACTGGAATATAATAGAATAGAACTTTTCCCATTATAAAAACACTAGAAGTGAATTCATTTGCTTAACGTTTGAAGTGCTGTTCATCTTAGTGTTTTTTCTCTATTTTACCAATGAAGCAGGAAGCTCTAAAAGTGGTCAAAGACTTGAGAATAGAACAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAAGTTCTTTTTTGATGCCATTATTCAGCTCAACCAAACAAACTGA

mRNA sequence

ATGTCAGGAAAGACGCCGAATATACCTCGGGAAATTCTATTAGAGATACTCGGACCCTCGAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCATATGTGGAAAAGTGTTTTTTCTCTATTTTACCAATGAAGCAGGAAGCTCTAAAAGTGGTCAAAGACTTGAGAATAGAACAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAAGTTCTTTTTTGATGCCATTATTCAGCTCAACCAAACAAACTGA

Coding sequence (CDS)

ATGTCAGGAAAGACGCCGAATATACCTCGGGAAATTCTATTAGAGATACTCGGACCCTCGAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCATATGTGGAAAAGTGTTTTTTCTCTATTTTACCAATGAAGCAGGAAGCTCTAAAAGTGGTCAAAGACTTGAGAATAGAACAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAAGTTCTTTTTTGATGCCATTATTCAGCTCAACCAAACAAACTGA

Homology

[Close]

BLAST of CmoCh17G006000 vs. TrEMBL
Match: A0A0A0KBW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G086150 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.9e-29
Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 1


Query: 3   GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRI 62
           GKTPNIPR+ILLEILGPSKVYKQVIKEVINSTVAAYVEK          EALKV KDLRI
Sbjct: 130 GKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK----------EALKVGKDLRI 189

Query: 63  EQSYEDLEDQFEPDEKFFFDAIIQLNQTN 92
           +QSYEDLEDQFEPDE FFFDAIIQL ++N
Sbjct: 190 DQSYEDLEDQFEPDENFFFDAIIQLKESN 208

[Close]

BLAST of CmoCh17G006000 vs. TrEMBL
Match: U5FVR2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12910g PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.0e-24
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 1


Query: 3   GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRI 62
           GKTP+IPR+ILLE+LGPSKVYK+VIK+VINSTVA YV+K          E LKV KDLR+
Sbjct: 132 GKTPDIPRDILLEVLGPSKVYKEVIKKVINSTVAEYVDK----------EGLKVSKDLRV 191

Query: 63  EQSYEDLEDQFEPDEKFFFDAIIQLNQT 91
           EQS+EDLED FEPDEKF FDA+IQL QT
Sbjct: 192 EQSFEDLEDAFEPDEKFSFDAVIQLQQT 209

[Close]

BLAST of CmoCh17G006000 vs. TrEMBL
Match: A0A061EIP8_THECC (Transport, ribosome-binding, bacterial, putative isoform 2 OS=Theobroma cacao GN=TCM_019901 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.3e-23
Identity = 61/89 (68.54%), Postives = 71/89 (79.78%), Query Frame = 1


Query: 3   GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRI 62
           GKTPNIPR+ILLE+LG SKVYKQVI +VINSTVA YVEK          E+L V KDLR+
Sbjct: 130 GKTPNIPRDILLEVLGASKVYKQVITKVINSTVAEYVEK----------ESLAVGKDLRV 189

Query: 63  EQSYEDLEDQFEPDEKFFFDAIIQLNQTN 92
           EQS+EDLE+ FEPDEKF FDA+I+L +TN
Sbjct: 190 EQSFEDLEEMFEPDEKFRFDAVIKLQETN 208

[Close]

BLAST of CmoCh17G006000 vs. TrEMBL
Match: B9SX51_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0547660 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.3e-23
Identity = 61/85 (71.76%), Postives = 69/85 (81.18%), Query Frame = 1


Query: 3   GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRI 62
           GKTP+IPR+ILLE+LGPSKVYK+VIK+VINSTVA YVEK          E LKV KDLRI
Sbjct: 109 GKTPDIPRDILLEVLGPSKVYKEVIKKVINSTVAKYVEK----------EGLKVSKDLRI 168

Query: 63  EQSYEDLEDQFEPDEKFFFDAIIQL 88
           EQS+EDLE+ FEPD KF FDA+IQL
Sbjct: 169 EQSFEDLEETFEPDAKFSFDAVIQL 183

[Close]

BLAST of CmoCh17G006000 vs. TrEMBL
Match: A0A0A0KEX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G085130 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-22
Identity = 63/84 (75.00%), Postives = 69/84 (82.14%), Query Frame = 1


Query: 8  IPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYE 67
          IPR+ILLEILGPSKVYKQVIKEVIN TVAAYVE          QEALKV KDLRI+QSYE
Sbjct: 13 IPRDILLEILGPSKVYKQVIKEVINFTVAAYVE----------QEALKVRKDLRIDQSYE 72

Query: 68 DLEDQFEPDEKFFFDAIIQLNQTN 92
          DLEDQ EPD KFFF++IIQL ++N
Sbjct: 73 DLEDQSEPDGKFFFESIIQLKESN 86

[Close]

BLAST of CmoCh17G006000 vs. TAIR10
Match: AT2G30695.1 (AT2G30695.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-20
Identity = 52/89 (58.43%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 3   GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRI 62
           GKTPNIP+++LLEILG SKVYKQVIK++INS +  YV          KQE LKV K+L +
Sbjct: 121 GKTPNIPKDVLLEILGYSKVYKQVIKKLINSAIEDYV----------KQEDLKVGKELTV 180

Query: 63  EQSYEDLEDQFEPDEKFFFDAIIQLNQTN 92
            QSYEDLE+ FEP E F FDA I+L + +
Sbjct: 181 VQSYEDLEETFEPGESFSFDATIKLQEAS 199

[Close]

BLAST of CmoCh17G006000 vs. NCBI nr
Match: gi|659120109|ref|XP_008460018.1| (PREDICTED: uncharacterized protein LOC103498958 isoform X3 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 6.8e-30
Identity = 74/89 (83.15%), Postives = 78/89 (87.64%), Query Frame = 1


Query: 3   GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRI 62
           GKTPNIPR+ILLEILGPSKVYKQVIKEVINSTVAAYVEK         QEALKV KDLRI
Sbjct: 130 GKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK---------QEALKVGKDLRI 189

Query: 63  EQSYEDLEDQFEPDEKFFFDAIIQLNQTN 92
           +QSYEDLEDQFEPDEKFFFDAIIQL ++N
Sbjct: 190 DQSYEDLEDQFEPDEKFFFDAIIQLKESN 209

[Close]

BLAST of CmoCh17G006000 vs. NCBI nr
Match: gi|778711466|ref|XP_011656735.1| (PREDICTED: uncharacterized protein LOC101211587 isoform X1 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-29
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 3   GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRI 62
           GKTPNIPR+ILLEILGPSKVYKQVIKEVINSTVAAYVE         KQEALKV KDLRI
Sbjct: 130 GKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVE---------KQEALKVGKDLRI 189

Query: 63  EQSYEDLEDQFEPDEKFFFDAIIQLNQTN 92
           +QSYEDLEDQFEPDE FFFDAIIQL ++N
Sbjct: 190 DQSYEDLEDQFEPDENFFFDAIIQLKESN 209

[Close]

BLAST of CmoCh17G006000 vs. NCBI nr
Match: gi|659120105|ref|XP_008460016.1| (PREDICTED: uncharacterized protein LOC103498958 isoform X1 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 3.4e-29
Identity = 73/88 (82.95%), Postives = 77/88 (87.50%), Query Frame = 1


Query: 4   KTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIE 63
           KTPNIPR+ILLEILGPSKVYKQVIKEVINSTVAAYVEK         QEALKV KDLRI+
Sbjct: 135 KTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK---------QEALKVGKDLRID 194

Query: 64  QSYEDLEDQFEPDEKFFFDAIIQLNQTN 92
           QSYEDLEDQFEPDEKFFFDAIIQL ++N
Sbjct: 195 QSYEDLEDQFEPDEKFFFDAIIQLKESN 213

[Close]

BLAST of CmoCh17G006000 vs. NCBI nr
Match: gi|659120111|ref|XP_008460019.1| (PREDICTED: uncharacterized protein LOC103498958 isoform X4 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 3.4e-29
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 3   GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRI 62
           GKTPNIPR+ILLEILGPSKVYKQVIKEVINSTVAAYVEK          EALKV KDLRI
Sbjct: 130 GKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK----------EALKVGKDLRI 189

Query: 63  EQSYEDLEDQFEPDEKFFFDAIIQLNQTN 92
           +QSYEDLEDQFEPDEKFFFDAIIQL ++N
Sbjct: 190 DQSYEDLEDQFEPDEKFFFDAIIQLKESN 208

[Close]

BLAST of CmoCh17G006000 vs. NCBI nr
Match: gi|449445672|ref|XP_004140596.1| (PREDICTED: uncharacterized protein LOC101211587 isoform X2 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 1


Query: 3   GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRI 62
           GKTPNIPR+ILLEILGPSKVYKQVIKEVINSTVAAYVEK          EALKV KDLRI
Sbjct: 130 GKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK----------EALKVGKDLRI 189

Query: 63  EQSYEDLEDQFEPDEKFFFDAIIQLNQTN 92
           +QSYEDLEDQFEPDE FFFDAIIQL ++N
Sbjct: 190 DQSYEDLEDQFEPDENFFFDAIIQLKESN 208

The following BLAST results are available for this feature:

BLAST of CmoCh17G006000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh17G006000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBW0_CUCSA	8.9e-29	80.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G086150 PE=4 SV=1	[more]
U5FVR2_POPTR	1.0e-24	71.59	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12910g PE=4 SV=1	[more]
A0A061EIP8_THECC	4.3e-23	68.54	Transport, ribosome-binding, bacterial, putative isoform 2 OS=Theobroma cacao GN...	[more]
B9SX51_RICCO	7.3e-23	71.76	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0547660 PE=4 SV=1	[more]
A0A0A0KEX9_CUCSA	1.3e-22	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G085130 PE=4 SV=1	[more]

BLAST of CmoCh17G006000 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30695.1	1.4e-20	58.43	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CmoCh17G006000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120109\|ref\|XP_008460018.1\|	6.8e-30	83.15	PREDICTED: uncharacterized protein LOC103498958 isoform X3 [Cucumis melo]	[more]
gi\|778711466\|ref\|XP_011656735.1\|	2.0e-29	82.02	PREDICTED: uncharacterized protein LOC101211587 isoform X1 [Cucumis sativus]	[more]
gi\|659120105\|ref\|XP_008460016.1\|	3.4e-29	82.95	PREDICTED: uncharacterized protein LOC103498958 isoform X1 [Cucumis melo]	[more]
gi\|659120111\|ref\|XP_008460019.1\|	3.4e-29	82.02	PREDICTED: uncharacterized protein LOC103498958 isoform X4 [Cucumis melo]	[more]
gi\|449445672\|ref\|XP_004140596.1\|	1.3e-28	80.90	PREDICTED: uncharacterized protein LOC101211587 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0006457	protein folding
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006399	tRNA metabolic process
biological_process	GO:0015031	protein transport
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G006000.1	CmoCh17G006000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR30560	TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE	coord: 8..87 score: 8.4
None	No IPR available	PANTHER	PTHR30560:SF4	SUBFAMILY NOT NAMED	coord: 8..87 score: 8.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G006000	CmaCh17G006150	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G006000	Cla007031	Watermelon (97103) v1	cmowmB350
CmoCh17G006000	Csa6G085130	Cucumber (Chinese Long) v2	cmocuB363
CmoCh17G006000	MELO3C022428	Melon (DHL92) v3.5.1	cmomeB310
CmoCh17G006000	ClCG06G001070	Watermelon (Charleston Gray)	cmowcgB320
CmoCh17G006000	CSPI06G06670	Wild cucumber (PI 183967)	cmocpiB367
CmoCh17G006000	Cp4.1LG12g09820	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G006000	MELO3C022428.2	Melon (DHL92) v3.6.1	cmomedB355
CmoCh17G006000	CsaV3_6G007000	Cucumber (Chinese Long) v3	cmocucB0439
CmoCh17G006000	Cla97C06G110340	Watermelon (97103) v2	cmowmbB356
CmoCh17G006000	CsGy6G006680	Cucumber (Gy14) v2	cgybcmoB740
CmoCh17G006000	Carg18915	Silver-seed gourd	carcmoB1037

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G006000	Silver-seed gourd	carcmoB0118
CmoCh17G006000	Wax gourd	cmowgoB0467
CmoCh17G006000	Cucurbita moschata (Rifu)	cmocmoB327
CmoCh17G006000	Cucurbita maxima (Rimu)	cmacmoB903
CmoCh17G006000	Cucurbita pepo (Zucchini)	cmocpeB356
CmoCh17G006000	Bottle gourd (USVL1VR-Ls)	cmolsiB324