Carg18915 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18915
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	trigger factor-like
Location	Cucurbita_argyrosperma_scaffold_086 : 125104 .. 129432 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCGGTATATCTGGTTGTACAGACAACCACTGTCTGAAAGAAACGAAGGTTGAGTTCGGTGAAGTGGATAAGAGCGACGAGAGAGACGATGCAAATAGCCGCTACGAATTTCTTTCTTTCGGCAAACCCCAAGGTGAATCATCCTTCTGTCCGGCTCTATTTATGTTTATCTTCCATTTACCGATCAACTTTCAGAGAATCATATTCCGTATTCAATGATAAATAGTTGCAACTTTTTTTTTTTTTTTTTTTTTTTTAATTTTGTTACTGGACTATATTGAGTGAGCAAGGAAGAACAGATGTAGCAAGCAATATAACACAAAGTATTATGTATTGGCCAACTACAATTTGTGCTAACAGAGCCGTTGGTTTTCTGGGAAAAATATTTGGAGAGGAAAGAATCGGAAAGGTCGTCTAAAGTGATGGATTTCAAGTGTTATGTAGTGGTTTATTGCTACATTTTCGTCGGGTCTTAGTTAGAAACGCTCTTTTGTGGGTTAGGTTCGTGTTAGGGTTCATTTTTTTTTTTGTTTTTTTTTTTTTTTAATTTTTGATTCTTTCATTTCTAATTATAGTTTTTCTGTTAATATTCATCTGAAGTTTATTTCATTCTTATTCAACTTTCTTTCTTAATTGCAGGCTATATATCATAAGCAGACAGCAGATTGCTTTACTCCAAATCTCACCAGCATAAGCGTGTCTTTTCCCAGTCAAATGGGATATGGCAGCAGAAAAATTTCTGTGAGGTAATTTCTATTTAATTTTACCAAATTATATGTTCCAAAGAATTGTATAAGCCAAATTATGAAAGTTAGTCGTGTCCCTGATTAGGAAGACTTCAGCATCTAATTGATTTACTCTGAACTTTACTTTTATATGATGAAGCTGACTGGTTGACGATCAAAGTTTACGAAACATATAAACTCATAAAAGACTTTCTTTACTAAGAAATTTTGACTTCTAATCTGGATATATGAATGCTCACGAATTGCCTCATTTTTCTCAACTGGATGCTTCACATCCTGTCCTGCTATTTAGTCACTTCAAAATAGAAAGTTAACATGGAGTATCCCACCAATTCGCCATCCAGATCATAACTAAATTTTGGATGTAGTTTTTCTTTGTGGATGATCGAACCAACTTTTATCTAAAGTAAACTACAAAAAAGGTCCACAAAAAGCAGAAACATACTATAACATAATTACAAGAACAAATGGCAACTGGTTGTTATCAAATTTTTGGATAGGAAGTTACCATTTGCCTTTTGTTAAATCTACTAAAACCCGAAAAAGATAGGCCATGGATTTAATATTTTATCGATTCAGAAACTAGCAAGCTATCTAGTAAGTGATTTATCAATAATAATTAGGGAGGAAATAATATTTGCTTCTCTATGGTTGAGGCCCTTCATTGCGCGGTTCACTTGGAGGAGAGATTGCCTCTCTATGATTGAGGCTGTCCTCTTGAGTTTGCCCTTCTGTAGAATGGCCACGTGTTGTGGCAAGTGAGCTTCTTTGCTATTGCTTGAGATATTTGATTTGAGAGAATGAGGTTGAAAGATCTAGGGAGGAGGTTTCGGGAGGGGGCTCGGTTTAATGCCTCTTTGTGGACATCTGTTTATAGTCTCCTTTGTAATTATGGTATTGGCATGATTTTGTTGGATTGAAGCCTTTTTTTAGTTAGTTGGGGCTCCTTTTTTTGTGGGATGTTTTGTTGTATGCCCTCTTTTTTCATTTTTTCTCAAACCAGCACGCCTAACGTCTTAATGATTTACTGCGGGTTCGCTTCTCTCAAAGTATTAAGAATATGATAAGTAGGAGTTGCTTACGTTCCTAATTATAGAAATTATTTTGTTCACTTTACAGTAAAAGTAACAGATATCTTCCAGCTGCTTGTGCTGCATTATCAGGTTAAAACGCTCGTCTCTTCGAAGAGCAATTTCAATATTTTCCATTTATACGAGGACTATGTTAGCTAAATCTTTAATTCTATTGTGAGCAGAAGATGTGAGTGTTTCTTCTTCTCAGTTTGAAGACTTCTCTGTCACTAAAGCTACTAATATCAATGAGAATAAAGAACTAAAGGTATGAAATACGGTGAGTTTTATTCTTAGGTTCCTTATGTCTATAATCCTCAGATTACTATCTTTCAAATATTTTGTTTGTTGTTACTTCACTTAGACATTCAATTTAGTCTCTAAAAACATGTCTAGTCCTTGCCATTGATTATCCATTAGTTAGTTTAAAAGAATTGAAAAAAATCATAAAAGACTAATGGTAATGTTTGTAAGTTCAATGCAGATTCAGGAGCCATGTTTTATTTATTTATTTGATTGATTTTTCTTGAGTTTGCAACCAGATTTGTATTGAGGTCTCTGGAGCTAAAACACGAGCAATTTTCGACATTGTGTTCAATGAAATGGTTGATAAAGCGCAGCCTATTCCCGGTTTTAGAAGAGCGAAAGGAGGTAATATCCAGAGGCGTGTTTCTTATTCGAGTTGCTCATGGCTTTCATTTTTGTTTTATCAATATCAATCTAATAATGTTGCTAGCACCATTGTTTTCGGCCGAGCTGTTGTATATTTTACGCGCATGGTTAAGGTTACAGTTGATTGTGTTGTCTTCATGTTAGAGAAATGAAAACGTTACTAAACGACTCCTAAAAAATCAGAAAATCGCTTTCTTTAATTCGTTTCTCACAATGTTTTCATTTTTCTTATCCTTTCCAATTCATTTCATTGGACTTGAATAATGCTGTTCTTCATTGAATGTCAGGAAAGACGCCGAATGTAAGTTTTTTTCCTTTCAATCTCTTGGTTTTCAATAAGCAACTATTGACTATGTCTGAATAATGACGAGTTCATCATTTGTTATCGACAGATACCTCGGGAAATTCTATTAGAGATACTCGGACCTTCGAAGGTGTACAAGCAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCATATGTGGAAAAGGTAGAGATATAATTGCCATTTTCATATTCTGGTTTCGAGCTGGGGTTATTTCGATCTTATAATCTTAATTAATTTGAATCCATTTACATGTTTTTCCCTGTCCTATATGATGAATTAATAACTCAAGTCTAGAAATTGTTTTAGCATACAGAGTGGAGCCTTCTGAAATCTACGTTAAAATAGTGAAAATGTTTTCACTTCATAGTAGATATTTTCTGCACATAGATTCACATATTGTAAGATTCCACGTCAGTTGGGGAGGAGAACAAAATATTCTTTATAAGAGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAACAACCTTGAGGGTAGGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGTGGTGGGTTTGAGCTGTTACAAATGGTATCAAAGCCAGACACCAGGTGATGTGCCAGCGAGGAGGTTGAGCCCTAGAGGGGGATGGACACGAGGCGGTGTGCCAGCAAGGATGTTGGGCCCTGAAGGGGGGTGAATTGGAGGATCCCACATCGATTGGAGAAGGGAACGAGTGCGAGTGAGTATGCTGGGCCCCGAAGGGGGATGGATTGTGAGATCCCATATCGATTGGGGAGGAGAACGAAACATTCTTCTTCCTAGCAGACACGTTTTAAATACCTCGAGGGGAAACCCAAAAAGGAAAGTTCAAAAAGGACAATATTGGTTAGCGGTGGATTTGGGTCGTTACAAATATGGACAGAGTTCATATTTTGATCATCTTCCTCCATAGTAGAGTTGAGCCGCATCGATAGAGGTAGTATAGAGGATTTAAAAGCAATTAGAACATCCTCTTCTTCTCTTTTTATGGTAATTCATTGATTATTCTATGACAGCTTTTTTAGGTTTTCATATCGAAATAGGAACTGGACCGAAAACGATATCATATCAATGCTATTATACAATGTGACTAGAACTGTGACATGACTGGAATATAATAGAATAGAACTTTTCCCATAATAAAAACACTAGAAGTGAATTCATTTGCTTAACGTTTGAAGTGCTGTTCATCTTAGTGTTTTTTCTCTATTTTACCAATGAAGCAGGAAGCTCTAAAAGTGGGCAAACACTTGAGAATAGAACAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAAGTTCTTTTTTGATGCCATTATTCAGCTCAACCAAACAAACTGAACTATTGAATTACATTGCAAGATACTTTCACCCTGAATTTTGATTAATTGAAAGTGTTTTTTTTTTAAGCATTTCCAACACTTAATGTAACAAATGTAGTGTTTGCTAAAAAAATTTCGAGCCTCGTATTGATATGAATCATGATGTAT

mRNA sequence

AGCGGTATATCTGGTTGTACAGACAACCACTGTCTGAAAGAAACGAAGGTTGAGTTCGGTGAAGTGGATAAGAGCGACGAGAGAGACGATGCAAATAGCCGCTACGAATTTCTTTCTTTCGGCAAACCCCAAGGCTATATATCATAAGCAGACAGCAGATTGCTTTACTCCAAATCTCACCAGCATAAGCGTGTCTTTTCCCAGTCAAATGGGATATGGCAGCAGAAAAATTTCTGTGAGTAAAAGTAACAGATATCTTCCAGCTGCTTGTGCTGCATTATCAGAAGATGTGAGTGTTTCTTCTTCTCAGTTTGAAGACTTCTCTGTCACTAAAGCTACTAATATCAATGAGAATAAAGAACTAAAGATTTGTATTGAGGTCTCTGGAGCTAAAACACGAGCAATTTTCGACATTGTGTTCAATGAAATGGTTGATAAAGCGCAGCCTATTCCCGGTTTTAGAAGAGCGAAAGGAGGTAATATCCAGAGGCGTGTTTCTTATTCGAGTTGCTCATGGCTTTCATTTTTGTTTTATCAATATCAATCTAATAATGTTGCTAGCACCATTGTTTTCGGCCGAGCTGTTGTATATTTTACGCGCATGGTTAAGATACCTCGGGAAATTCTATTAGAGATACTCGGACCTTCGAAGGTGTACAAGCAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCATATGTGGAAAAGGAAGCTCTAAAAGTGGGCAAACACTTGAGAATAGAACAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAAGTTCTTTTTTGATGCCATTATTCAGCTCAACCAAACAAACTGAACTATTGAATTACATTGCAAGATACTTTCACCCTGAATTTTGATTAATTGAAAGTGTTTTTTTTTTAAGCATTTCCAACACTTAATGTAACAAATGTAGTGTTTGCTAAAAAAATTTCGAGCCTCGTATTGATATGAATCATGATGTAT

Coding sequence (CDS)

ATGCAAATAGCCGCTACGAATTTCTTTCTTTCGGCAAACCCCAAGGCTATATATCATAAGCAGACAGCAGATTGCTTTACTCCAAATCTCACCAGCATAAGCGTGTCTTTTCCCAGTCAAATGGGATATGGCAGCAGAAAAATTTCTGTGAGTAAAAGTAACAGATATCTTCCAGCTGCTTGTGCTGCATTATCAGAAGATGTGAGTGTTTCTTCTTCTCAGTTTGAAGACTTCTCTGTCACTAAAGCTACTAATATCAATGAGAATAAAGAACTAAAGATTTGTATTGAGGTCTCTGGAGCTAAAACACGAGCAATTTTCGACATTGTGTTCAATGAAATGGTTGATAAAGCGCAGCCTATTCCCGGTTTTAGAAGAGCGAAAGGAGGTAATATCCAGAGGCGTGTTTCTTATTCGAGTTGCTCATGGCTTTCATTTTTGTTTTATCAATATCAATCTAATAATGTTGCTAGCACCATTGTTTTCGGCCGAGCTGTTGTATATTTTACGCGCATGGTTAAGATACCTCGGGAAATTCTATTAGAGATACTCGGACCTTCGAAGGTGTACAAGCAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCATATGTGGAAAAGGAAGCTCTAAAAGTGGGCAAACACTTGAGAATAGAACAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAAGTTCTTTTTTGATGCCATTATTCAGCTCAACCAAACAAACTGA

Protein sequence

MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDIVFNEMVDKAQPIPGFRRAKGGNIQRRVSYSSCSWLSFLFYQYQSNNVASTIVFGRAVVYFTRMVKIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKHLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN

Homology

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BLAST of Carg18915 vs. NCBI nr
Match: XP_022953543.1 (uncharacterized protein LOC111456053 isoform X2 [Cucurbita moschata])

HSP 1 Score: 365.2 bits (936), Expect = 1.8e-97
Identity = 201/248 (81.05%), Postives = 202/248 (81.45%), Query Frame = 0


Query: 1   MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAA 60
           MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAA
Sbjct: 1   MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAA 60

Query: 61  CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDIVFNEMVDKAQP 120
           CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFD VFNEMVDKAQP
Sbjct: 61  CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQP 120

Query: 121 IPGFRRAKGGNIQRRVSYSSCSWLSFLFYQYQSNNVASTIVFGRAVVYFTRMVKIPREIL 180
           IPGFRRAKGG                                        +   IPREIL
Sbjct: 121 IPGFRRAKGG----------------------------------------KTPNIPREIL 180

Query: 181 LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKHLRIEQSYEDLEDQFEPDEKFFFDA 240
           LEILGPSKVYKQVIKEVINSTVAAYVEKEALKV K LRIEQSYEDLEDQFEPDEKFFFDA
Sbjct: 181 LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDA 208

Query: 241 IIQLNQTN 249
           IIQLNQTN
Sbjct: 241 IIQLNQTN 208

[Close]

BLAST of Carg18915 vs. NCBI nr
Match: XP_022953542.1 (uncharacterized protein LOC111456053 isoform X1 [Cucurbita moschata])

HSP 1 Score: 360.5 bits (924), Expect = 4.5e-96
Identity = 201/249 (80.72%), Postives = 202/249 (81.12%), Query Frame = 0


Query: 1   MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAA 60
           MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAA
Sbjct: 1   MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAA 60

Query: 61  CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDIVFNEMVDKAQP 120
           CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFD VFNEMVDKAQP
Sbjct: 61  CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQP 120

Query: 121 IPGFRRAKGGNIQRRVSYSSCSWLSFLFYQYQSNNVASTIVFGRAVVYFTRMVKIPREIL 180
           IPGFRRAKGG                                        +   IPREIL
Sbjct: 121 IPGFRRAKGG----------------------------------------KTPNIPREIL 180

Query: 181 LEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKHLRIEQSYEDLEDQFEPDEKFFFD 240
           LEILGPSKVYKQVIKEVINSTVAAYVEK EALKV K LRIEQSYEDLEDQFEPDEKFFFD
Sbjct: 181 LEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFD 209

Query: 241 AIIQLNQTN 249
           AIIQLNQTN
Sbjct: 241 AIIQLNQTN 209

[Close]

BLAST of Carg18915 vs. NCBI nr
Match: XP_023549255.1 (uncharacterized protein LOC111807668 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360.1 bits (923), Expect = 5.8e-96
Identity = 199/248 (80.24%), Postives = 201/248 (81.05%), Query Frame = 0


Query: 1   MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAA 60
           MQIAATNFFLSANPKAIYHKQTAD FTPNLTS SVSFPSQMGYGSRKISVSKSNRYLPAA
Sbjct: 1   MQIAATNFFLSANPKAIYHKQTADYFTPNLTSKSVSFPSQMGYGSRKISVSKSNRYLPAA 60

Query: 61  CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDIVFNEMVDKAQP 120
           CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFD VFNEMVDKAQP
Sbjct: 61  CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQP 120

Query: 121 IPGFRRAKGGNIQRRVSYSSCSWLSFLFYQYQSNNVASTIVFGRAVVYFTRMVKIPREIL 180
           IPGFRRAKGG                                        +   IPREIL
Sbjct: 121 IPGFRRAKGG----------------------------------------KTPNIPREIL 180

Query: 181 LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKHLRIEQSYEDLEDQFEPDEKFFFDA 240
           LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGK LRIEQSYEDLE+QFEPDEKFFFDA
Sbjct: 181 LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLEEQFEPDEKFFFDA 208

Query: 241 IIQLNQTN 249
           IIQLNQTN
Sbjct: 241 IIQLNQTN 208

[Close]

BLAST of Carg18915 vs. NCBI nr
Match: XP_022992398.1 (uncharacterized protein LOC111488717 [Cucurbita maxima])

HSP 1 Score: 359.4 bits (921), Expect = 1.0e-95
Identity = 198/248 (79.84%), Postives = 199/248 (80.24%), Query Frame = 0


Query: 1   MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAA 60
           MQIAATNFFLSANPKA YHKQTADCFTPNLTS SVSFPSQMGYGSRKISVSKSNRYLPAA
Sbjct: 1   MQIAATNFFLSANPKAKYHKQTADCFTPNLTSKSVSFPSQMGYGSRKISVSKSNRYLPAA 60

Query: 61  CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDIVFNEMVDKAQP 120
           CAALSEDV VSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFD VFNEMVDKAQP
Sbjct: 61  CAALSEDVIVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQP 120

Query: 121 IPGFRRAKGGNIQRRVSYSSCSWLSFLFYQYQSNNVASTIVFGRAVVYFTRMVKIPREIL 180
           IPGFRR KGG                                        +   IPREIL
Sbjct: 121 IPGFRRVKGG----------------------------------------KTPNIPREIL 180

Query: 181 LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKHLRIEQSYEDLEDQFEPDEKFFFDA 240
           LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGK LRIEQSYEDLEDQFEPDEKFFFDA
Sbjct: 181 LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDA 208

Query: 241 IIQLNQTN 249
           IIQLNQTN
Sbjct: 241 IIQLNQTN 208

[Close]

BLAST of Carg18915 vs. NCBI nr
Match: XP_023549254.1 (uncharacterized protein LOC111807668 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355.5 bits (911), Expect = 1.4e-94
Identity = 199/249 (79.92%), Postives = 201/249 (80.72%), Query Frame = 0


Query: 1   MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAA 60
           MQIAATNFFLSANPKAIYHKQTAD FTPNLTS SVSFPSQMGYGSRKISVSKSNRYLPAA
Sbjct: 1   MQIAATNFFLSANPKAIYHKQTADYFTPNLTSKSVSFPSQMGYGSRKISVSKSNRYLPAA 60

Query: 61  CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDIVFNEMVDKAQP 120
           CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFD VFNEMVDKAQP
Sbjct: 61  CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQP 120

Query: 121 IPGFRRAKGGNIQRRVSYSSCSWLSFLFYQYQSNNVASTIVFGRAVVYFTRMVKIPREIL 180
           IPGFRRAKGG                                        +   IPREIL
Sbjct: 121 IPGFRRAKGG----------------------------------------KTPNIPREIL 180

Query: 181 LEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKHLRIEQSYEDLEDQFEPDEKFFFD 240
           LEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGK LRIEQSYEDLE+QFEPDEKFFFD
Sbjct: 181 LEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEEQFEPDEKFFFD 209

Query: 241 AIIQLNQTN 249
           AIIQLNQTN
Sbjct: 241 AIIQLNQTN 209

[Close]

BLAST of Carg18915 vs. TAIR10
Match: AT2G30695.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-31
Identity = 86/203 (42.36%), Postives = 112/203 (55.17%), Query Frame = 0


Query: 46  RKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRA 105
           +K+    +NR   A CAA S DV  SS   E   +TK      N E+K+ ++VSG KT+ 
Sbjct: 40  QKLCTRATNRQFVAVCAAPS-DVETSSKD-ESVLITKVETETSN-EVKVHVQVSGEKTQT 99

Query: 106 IFDIVFNEMVDKAQPIPGFRRAKGGNIQRRVSYSSCSWLSFLFYQYQSNNVASTIVFGRA 165
           +F+ VF +MV  AQPIPGFRR KGG                                   
Sbjct: 100 VFNHVFEKMVAAAQPIPGFRRVKGG----------------------------------- 159

Query: 166 VVYFTRMVKIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKHLRIEQSYED 225
                +   IP+++LLEILG SKVYKQVIK++INS +  YV++E LKVGK L + QSYED
Sbjct: 160 -----KTPNIPKDVLLEILGYSKVYKQVIKKLINSAIEDYVKQEDLKVGKELTVVQSYED 199

Query: 226 LEDQFEPDEKFFFDAIIQLNQTN 249
           LE+ FEP E F FDA I+L + +
Sbjct: 220 LEETFEPGESFSFDATIKLQEAS 199

[Close]

BLAST of Carg18915 vs. TrEMBL
Match: tr|A0A1S3CC05|A0A1S3CC05_CUCME (trigger factor-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.2e-84
Identity = 174/248 (70.16%), Postives = 189/248 (76.21%), Query Frame = 0


Query: 1   MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAA 60
           MQIAA NFFLSANPKA+YHKQT D FTPNLT  SVSFPSQ+ YGS KIS+SK+NRYLPAA
Sbjct: 1   MQIAAANFFLSANPKAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAA 60

Query: 61  CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDIVFNEMVDKAQP 120
           CA LSE+ SVSSSQFEDFSVT  TN  ENKELKI +EVSG KTRAIF++VF+ MV +AQP
Sbjct: 61  CAVLSENASVSSSQFEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRAKGGNIQRRVSYSSCSWLSFLFYQYQSNNVASTIVFGRAVVYFTRMVKIPREIL 180
           IPGFRR KGGNIQR+                                       IPR+IL
Sbjct: 121 IPGFRRVKGGNIQRKTP------------------------------------NIPRDIL 180

Query: 181 LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKHLRIEQSYEDLEDQFEPDEKFFFDA 240
           LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGK LRI+QSYEDLEDQFEPDEKFFFDA
Sbjct: 181 LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDLEDQFEPDEKFFFDA 212

Query: 241 IIQLNQTN 249
           IIQL ++N
Sbjct: 241 IIQLKESN 212

[Close]

BLAST of Carg18915 vs. TrEMBL
Match: tr|A0A1S3CBJ8|A0A1S3CBJ8_CUCME (trigger factor-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 2.9e-83
Identity = 174/249 (69.88%), Postives = 189/249 (75.90%), Query Frame = 0


Query: 1   MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAA 60
           MQIAA NFFLSANPKA+YHKQT D FTPNLT  SVSFPSQ+ YGS KIS+SK+NRYLPAA
Sbjct: 1   MQIAAANFFLSANPKAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAA 60

Query: 61  CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDIVFNEMVDKAQP 120
           CA LSE+ SVSSSQFEDFSVT  TN  ENKELKI +EVSG KTRAIF++VF+ MV +AQP
Sbjct: 61  CAVLSENASVSSSQFEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRAKGGNIQRRVSYSSCSWLSFLFYQYQSNNVASTIVFGRAVVYFTRMVKIPREIL 180
           IPGFRR KGGNIQR+                                       IPR+IL
Sbjct: 121 IPGFRRVKGGNIQRKTP------------------------------------NIPRDIL 180

Query: 181 LEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKHLRIEQSYEDLEDQFEPDEKFFFD 240
           LEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGK LRI+QSYEDLEDQFEPDEKFFFD
Sbjct: 181 LEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDEKFFFD 213

Query: 241 AIIQLNQTN 249
           AIIQL ++N
Sbjct: 241 AIIQLKESN 213

[Close]

BLAST of Carg18915 vs. TrEMBL
Match: tr|A0A0A0KBW0|A0A0A0KBW0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G086150 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 3.2e-82
Identity = 172/248 (69.35%), Postives = 186/248 (75.00%), Query Frame = 0


Query: 1   MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAA 60
           MQIAA NFFLS NPKAIYHKQT D FTPNLT I VSFPSQ+ YGSRKIS+SK+NRYLPAA
Sbjct: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA 60

Query: 61  CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDIVFNEMVDKAQP 120
           CA LSE+VSVSSSQFEDFSVT  TN  ENKELKI +EVSGAKTRAIF++VF+ MV +AQP
Sbjct: 61  CAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRAKGGNIQRRVSYSSCSWLSFLFYQYQSNNVASTIVFGRAVVYFTRMVKIPREIL 180
           IPGFRR KGG                                        +   IPR+IL
Sbjct: 121 IPGFRRVKGG----------------------------------------KTPNIPRDIL 180

Query: 181 LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKHLRIEQSYEDLEDQFEPDEKFFFDA 240
           LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGK LRI+QSYEDLEDQFEPDE FFFDA
Sbjct: 181 LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDLEDQFEPDENFFFDA 208

Query: 241 IIQLNQTN 249
           IIQL ++N
Sbjct: 241 IIQLKESN 208

[Close]

BLAST of Carg18915 vs. TrEMBL
Match: tr|A0A1S3CB34|A0A1S3CB34_CUCME (trigger factor-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.1e-81
Identity = 170/248 (68.55%), Postives = 185/248 (74.60%), Query Frame = 0


Query: 1   MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAA 60
           MQIAA NFFLSANPKA+YHKQT D FTPNLT  SVSFPSQ+ YGS KIS+SK+NRYLPAA
Sbjct: 1   MQIAAANFFLSANPKAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAA 60

Query: 61  CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDIVFNEMVDKAQP 120
           CA LSE+ SVSSSQFEDFSVT  TN  ENKELKI +EVSG KTRAIF++VF+ MV +AQP
Sbjct: 61  CAVLSENASVSSSQFEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRAKGGNIQRRVSYSSCSWLSFLFYQYQSNNVASTIVFGRAVVYFTRMVKIPREIL 180
           IPGFRR KGG                                        +   IPR+IL
Sbjct: 121 IPGFRRVKGG----------------------------------------KTPNIPRDIL 180

Query: 181 LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKHLRIEQSYEDLEDQFEPDEKFFFDA 240
           LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGK LRI+QSYEDLEDQFEPDEKFFFDA
Sbjct: 181 LEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLRIDQSYEDLEDQFEPDEKFFFDA 208

Query: 241 IIQLNQTN 249
           IIQL ++N
Sbjct: 241 IIQLKESN 208

[Close]

BLAST of Carg18915 vs. TrEMBL
Match: tr|A0A1S3CCS7|A0A1S3CCS7_CUCME (trigger factor-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 5.1e-80
Identity = 170/249 (68.27%), Postives = 185/249 (74.30%), Query Frame = 0


Query: 1   MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAA 60
           MQIAA NFFLSANPKA+YHKQT D FTPNLT  SVSFPSQ+ YGS KIS+SK+NRYLPAA
Sbjct: 1   MQIAAANFFLSANPKAVYHKQTTDYFTPNLTCTSVSFPSQIKYGSSKISLSKNNRYLPAA 60

Query: 61  CAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDIVFNEMVDKAQP 120
           CA LSE+ SVSSSQFEDFSVT  TN  ENKELKI +EVSG KTRAIF++VF+ MV +AQP
Sbjct: 61  CAVLSENASVSSSQFEDFSVTNVTNTTENKELKIRVEVSGTKTRAIFNVVFDRMVAEAQP 120

Query: 121 IPGFRRAKGGNIQRRVSYSSCSWLSFLFYQYQSNNVASTIVFGRAVVYFTRMVKIPREIL 180
           IPGFRR KGG                                        +   IPR+IL
Sbjct: 121 IPGFRRVKGG----------------------------------------KTPNIPRDIL 180

Query: 181 LEILGPSKVYKQVIKEVINSTVAAYVEK-EALKVGKHLRIEQSYEDLEDQFEPDEKFFFD 240
           LEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGK LRI+QSYEDLEDQFEPDEKFFFD
Sbjct: 181 LEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDEKFFFD 209

Query: 241 AIIQLNQTN 249
           AIIQL ++N
Sbjct: 241 AIIQLKESN 209

The following BLAST results are available for this feature:

BLAST of Carg18915 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953543.1	1.8e-97	81.05	uncharacterized protein LOC111456053 isoform X2 [Cucurbita moschata]	[more]
XP_022953542.1	4.5e-96	80.72	uncharacterized protein LOC111456053 isoform X1 [Cucurbita moschata]	[more]
XP_023549255.1	5.8e-96	80.24	uncharacterized protein LOC111807668 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022992398.1	1.0e-95	79.84	uncharacterized protein LOC111488717 [Cucurbita maxima]	[more]
XP_023549254.1	1.4e-94	79.92	uncharacterized protein LOC111807668 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg18915 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30695.1	2.1e-31	42.36	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Carg18915 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18915 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CC05\|A0A1S3CC05_CUCME	1.2e-84	70.16	trigger factor-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1	[more]
tr\|A0A1S3CBJ8\|A0A1S3CBJ8_CUCME	2.9e-83	69.88	trigger factor-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1	[more]
tr\|A0A0A0KBW0\|A0A0A0KBW0_CUCSA	3.2e-82	69.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G086150 PE=4 SV=1	[more]
tr\|A0A1S3CB34\|A0A1S3CB34_CUCME	2.1e-81	68.55	trigger factor-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1	[more]
tr\|A0A1S3CCS7\|A0A1S3CCS7_CUCME	5.1e-80	68.27	trigger factor-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498958 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015031	protein transport

Vocabulary: **INTERPRO**
Term	Definition
IPR005215	Trig_fac

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18915-RA	Carg18915-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005215	Trigger factor	PANTHER	PTHR30560	TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE	coord: 87..131 coord: 173..247
None	No IPR available	PANTHER	PTHR30560:SF2	SUBFAMILY NOT NAMED	coord: 87..131 coord: 173..247

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18915	Cla007031	Watermelon (97103) v1	carwmB0765
Carg18915	Csa6G085130	Cucumber (Chinese Long) v2	carcuB0786
Carg18915	MELO3C022428	Melon (DHL92) v3.5.1	carmeB0761
Carg18915	ClCG06G001070	Watermelon (Charleston Gray)	carwcgB0742
Carg18915	CSPI06G06670	Wild cucumber (PI 183967)	carcpiB0804
Carg18915	CmaCh17G006150	Cucurbita maxima (Rimu)	carcmaB1063
Carg18915	CmoCh17G006000	Cucurbita moschata (Rifu)	carcmoB1037
Carg18915	Lsi09G018300	Bottle gourd (USVL1VR-Ls)	carlsiB703
Carg18915	Cp4.1LG12g09820	Cucurbita pepo (Zucchini)	carcpeB1075
Carg18915	CsGy6G006680	Cucumber (Gy14) v2	carcgybB0763
Carg18915	MELO3C022428.2	Melon (DHL92) v3.6.1	carmedB0775
Carg18915	CsaV3_6G007000	Cucumber (Chinese Long) v3	carcucB0807
Carg18915	Cla97C06G110340	Watermelon (97103) v2	carwmbB0800

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None