Cp4.1LG12g01330 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g01330
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG12 : 851801 .. 852355 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAATTTGGCCGGGCAACCGCCGCCGATCTCCACCATCTACGCCCACTCCCGATTCCCGGTAGTCCACTCGTCGCTTGCCGGATCTGCGATGCAGTGTTTTCCAGTAGCCAAGCCCTAATTAACCATATCGGAGCACACGTCTCCGATGAAAGCGCCTCCTCTGCTGCAGCTTCTAGAAGACAGAGTCAACAACGAAGCCAAACGCATCGGCTTCCGCCTGGTCCGCCGCGAGCGACGGCGATGTTTCTGCCGAGTAGATATTCAGTGCCTCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCGAATCAACTCTCTCCATTCGCGAGAAGCCTGTTTAGAGAAGGACCGCCGTCGTATCCGCCGCCTGTCGGTCAGTACCTTACGAATTGGAATGCGGCGGAGGAGGCGAGCGGCGATTGTACGAAGCCTTATATAAATCAGTTGGAGAAATGCTTACCGAAAGTGGGCGGCGGCGGAGGTGAAGAAGACGACGGGCGTCAACTGTATTTCAGCAAACTAGACCTGACCCTGAGGCTGTGA

mRNA sequence

ATGGCCGAATTTGGCCGGGCAACCGCCGCCGATCTCCACCATCTACGCCCACTCCCGATTCCCGGTAGTCCACTCGTCGCTTGCCGGATCTGCGATGCAGTGTTTTCCAGTAGCCAAGCCCTAATTAACCATATCGGAGCACACGTCTCCGATGAAAGCGCCTCCTCTGCTGCAGCTTCTAGAAGACAGAGTCAACAACGAAGCCAAACGCATCGGCTTCCGCCTGGTCCGCCGCGAGCGACGGCGATGTTTCTGCCGAGTAGATATTCAGTGCCTCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCGAATCAACTCTCTCCATTCGCGAGAAGCCTGTTTAGAGAAGGACCGCCGTCGTATCCGCCGCCTGTCGGTCAGTACCTTACGAATTGGAATGCGGCGGAGGAGGCGAGCGGCGATTGTACGAAGCCTTATATAAATCAGTTGGAGAAATGCTTACCGAAAGTGGGCGGCGGCGGAGGTGAAGAAGACGACGGGCGTCAACTGTATTTCAGCAAACTAGACCTGACCCTGAGGCTGTGA

Coding sequence (CDS)

ATGGCCGAATTTGGCCGGGCAACCGCCGCCGATCTCCACCATCTACGCCCACTCCCGATTCCCGGTAGTCCACTCGTCGCTTGCCGGATCTGCGATGCAGTGTTTTCCAGTAGCCAAGCCCTAATTAACCATATCGGAGCACACGTCTCCGATGAAAGCGCCTCCTCTGCTGCAGCTTCTAGAAGACAGAGTCAACAACGAAGCCAAACGCATCGGCTTCCGCCTGGTCCGCCGCGAGCGACGGCGATGTTTCTGCCGAGTAGATATTCAGTGCCTCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCGAATCAACTCTCTCCATTCGCGAGAAGCCTGTTTAGAGAAGGACCGCCGTCGTATCCGCCGCCTGTCGGTCAGTACCTTACGAATTGGAATGCGGCGGAGGAGGCGAGCGGCGATTGTACGAAGCCTTATATAAATCAGTTGGAGAAATGCTTACCGAAAGTGGGCGGCGGCGGAGGTGAAGAAGACGACGGGCGTCAACTGTATTTCAGCAAACTAGACCTGACCCTGAGGCTGTGA

Protein sequence

MAEFGRATAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDESASSAAASRRQSQQRSQTHRLPPGPPRATAMFLPSRYSVPPNSLGFDAAESLWPNQLSPFARSLFREGPPSYPPPVGQYLTNWNAAEEASGDCTKPYINQLEKCLPKVGGGGGEEDDGRQLYFSKLDLTLRL

Homology

[Close]

BLAST of Cp4.1LG12g01330 vs. TrEMBL
Match: A0A0A0LNN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G174080 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.1e-53
Identity = 120/172 (69.77%), Postives = 131/172 (76.16%), Query Frame = 1


Query: 1   MAEFGRATAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDESASSAAAS 60
           MA+F R T ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDE A+    S
Sbjct: 1   MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGAT----S 60

Query: 61  RRQSQQRSQTHRLPPGP-----PRATAMFLPSRYSVPPNSLGFDAAESLWPNQLSPFARS 120
           RR  Q   Q  R P GP     PRATA+FLP+RYS  PN +GF+ AES+W NQ+SPF RS
Sbjct: 61  RRPVQ--DQQRRFPAGPAFLTAPRATAVFLPNRYS-SPNGIGFEGAESVWGNQISPFGRS 120

Query: 121 LFREGPPS-YPPP--VGQYLTNWNAAEE-ASGDCTKPYINQLEKCLPKVGGG 164
           +FREG  + YPPP  +GQY TN  A EE   GDCTKPYINQLEKCLPKV GG
Sbjct: 121 VFREGVAAPYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKGG 165

[Close]

BLAST of Cp4.1LG12g01330 vs. TrEMBL
Match: M5XVD2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021272mg PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-06
Identity = 62/189 (32.80%), Postives = 88/189 (46.56%), Query Frame = 1


Query: 17  PLPIP-GSPLVACRICDAVFSSSQALINHIGAHVSDESASSAAASRRQSQQRSQTHRLPP 76
           P  +P GS  +ACRICD VF S+QALINHI +H+ D+  +  A+  RQ  Q++ T+    
Sbjct: 21  PASMPSGSTEIACRICDRVFMSTQALINHIESHIVDDGLT--ASRLRQLTQQTNTNPPIR 80

Query: 77  GPPRATAMFLPSR-----YSVPPNSLGF--DAAESLWP---NQLSPFARSLFREGPPSYP 136
           G P A  +  P       + V  N +GF        +P    QLSP+A         +  
Sbjct: 81  GNP-AFPLQNPFHQRNPFHDVHNNQIGFAPPPPHHQYPYPQQQLSPYALPRNVNVNVNQG 140

Query: 137 PPVGQYL----TNWNAA------EEASGDCTKPYINQLEKCLPKVGGGGGEEDDGRQLYF 185
                Y+     N  AA      ++ S DCT P ++QLE+ LP V        +  +   
Sbjct: 141 VVGSHYMVMQSANQTAARMASEEDDLSSDCTMPLLSQLERPLPPVNYELDHRGNIGEASS 200

[Close]

BLAST of Cp4.1LG12g01330 vs. NCBI nr
Match: gi|700206472|gb|KGN61591.1| (hypothetical protein Csa_2G174080 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 3.0e-53
Identity = 120/172 (69.77%), Postives = 131/172 (76.16%), Query Frame = 1


Query: 1   MAEFGRATAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDESASSAAAS 60
           MA+F R T ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDE A+    S
Sbjct: 1   MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGAT----S 60

Query: 61  RRQSQQRSQTHRLPPGP-----PRATAMFLPSRYSVPPNSLGFDAAESLWPNQLSPFARS 120
           RR  Q   Q  R P GP     PRATA+FLP+RYS  PN +GF+ AES+W NQ+SPF RS
Sbjct: 61  RRPVQ--DQQRRFPAGPAFLTAPRATAVFLPNRYS-SPNGIGFEGAESVWGNQISPFGRS 120

Query: 121 LFREGPPS-YPPP--VGQYLTNWNAAEE-ASGDCTKPYINQLEKCLPKVGGG 164
           +FREG  + YPPP  +GQY TN  A EE   GDCTKPYINQLEKCLPKV GG
Sbjct: 121 VFREGVAAPYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKGG 165

[Close]

BLAST of Cp4.1LG12g01330 vs. NCBI nr
Match: gi|645235578|ref|XP_008224336.1| (PREDICTED: uncharacterized protein LOC103324080 [Prunus mume])

HSP 1 Score: 62.8 bits (151), Expect = 7.4e-07
Identity = 62/192 (32.29%), Postives = 88/192 (45.83%), Query Frame = 1


Query: 17  PLPIP-GSPLVACRICDAVFSSSQALINHIGAHVSDESASSAAASRRQSQQRSQTHRLPP 76
           P  +P GS  +ACRICD VF S+QALINHI +H+ D+  +  A+  RQ  Q++ T+    
Sbjct: 14  PASMPSGSTEIACRICDRVFMSTQALINHIESHIVDDGLT--ASRLRQLTQQTNTN---- 73

Query: 77  GPPRATAMFLPSR--------YSVPPNSLGF--DAAESLWP---NQLSPFARSLFREGPP 136
            P R+  +F  S         + V  N +GF        +P    QLSP+A         
Sbjct: 74  PPIRSNPVFPLSNPFNQRNPFHDVHNNQIGFAPPPPHHQYPYPQQQLSPYALPRNVNVNV 133

Query: 137 SYPPPVGQYLTNWNAAEEA----------SGDCTKPYINQLEKCLPKVGGGGGEEDDGRQ 185
           +       Y+   +A E A          S DCT P ++QLE+ LP V        +  +
Sbjct: 134 NQGVVGSHYMVMQSANETAARMASEEDNLSSDCTMPLLSQLERPLPPVNYELDRLGNIGE 193

[Close]

BLAST of Cp4.1LG12g01330 vs. NCBI nr
Match: gi|596238260|ref|XP_007224424.1| (hypothetical protein PRUPE_ppa021272mg [Prunus persica])

HSP 1 Score: 60.8 bits (146), Expect = 2.8e-06
Identity = 62/189 (32.80%), Postives = 88/189 (46.56%), Query Frame = 1


Query: 17  PLPIP-GSPLVACRICDAVFSSSQALINHIGAHVSDESASSAAASRRQSQQRSQTHRLPP 76
           P  +P GS  +ACRICD VF S+QALINHI +H+ D+  +  A+  RQ  Q++ T+    
Sbjct: 21  PASMPSGSTEIACRICDRVFMSTQALINHIESHIVDDGLT--ASRLRQLTQQTNTNPPIR 80

Query: 77  GPPRATAMFLPSR-----YSVPPNSLGF--DAAESLWP---NQLSPFARSLFREGPPSYP 136
           G P A  +  P       + V  N +GF        +P    QLSP+A         +  
Sbjct: 81  GNP-AFPLQNPFHQRNPFHDVHNNQIGFAPPPPHHQYPYPQQQLSPYALPRNVNVNVNQG 140

Query: 137 PPVGQYL----TNWNAA------EEASGDCTKPYINQLEKCLPKVGGGGGEEDDGRQLYF 185
                Y+     N  AA      ++ S DCT P ++QLE+ LP V        +  +   
Sbjct: 141 VVGSHYMVMQSANQTAARMASEEDDLSSDCTMPLLSQLERPLPPVNYELDHRGNIGEASS 200

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g01330 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG12g01330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNN3_CUCSA	2.1e-53	69.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G174080 PE=4 SV=1	[more]
M5XVD2_PRUPE	1.9e-06	32.80	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021272mg PE=4 SV=1	[more]

BLAST of Cp4.1LG12g01330 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG12g01330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206472\|gb\|KGN61591.1\|	3.0e-53	69.77	hypothetical protein Csa_2G174080 [Cucumis sativus]	[more]
gi\|645235578\|ref\|XP_008224336.1\|	7.4e-07	32.29	PREDICTED: uncharacterized protein LOC103324080 [Prunus mume]	[more]
gi\|596238260\|ref\|XP_007224424.1\|	2.8e-06	32.80	hypothetical protein PRUPE_ppa021272mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g01330.1	Cp4.1LG12g01330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 28..48 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 26..53 score: 9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG12g01330	CmaCh17G001560	Cucurbita maxima (Rimu)	cmacpeB371
Cp4.1LG12g01330	Cla007595	Watermelon (97103) v1	cpewmB161
Cp4.1LG12g01330	Csa2G174080	Cucumber (Chinese Long) v2	cpecuB127
Cp4.1LG12g01330	MELO3C023008	Melon (DHL92) v3.5.1	cpemeB137
Cp4.1LG12g01330	CSPI02G10250	Wild cucumber (PI 183967)	cpecpiB126
Cp4.1LG12g01330	Lsi09G012260	Bottle gourd (USVL1VR-Ls)	cpelsiB101
Cp4.1LG12g01330	MELO3C023008.2	Melon (DHL92) v3.6.1	cpemedB166
Cp4.1LG12g01330	CsaV3_2G012680	Cucumber (Chinese Long) v3	cpecucB0145
Cp4.1LG12g01330	Bhi12G001418	Wax gourd	cpewgoB0172

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG12g01330	Cucurbita pepo (Zucchini)	cpecpeB155
Cp4.1LG12g01330	Cucurbita pepo (Zucchini)	cpecpeB169
Cp4.1LG12g01330	Cucurbita pepo (Zucchini)	cpecpeB184
Cp4.1LG12g01330	Cucurbita pepo (Zucchini)	cpecpeB189
Cp4.1LG12g01330	Cucurbita pepo (Zucchini)	cpecpeB194
Cp4.1LG12g01330	Cucumber (Gy14) v1	cgycpeB0670
Cp4.1LG12g01330	Cucumber (Gy14) v1	cgycpeB1007
Cp4.1LG12g01330	Cucurbita maxima (Rimu)	cmacpeB259
Cp4.1LG12g01330	Cucurbita maxima (Rimu)	cmacpeB519
Cp4.1LG12g01330	Cucurbita maxima (Rimu)	cmacpeB600
Cp4.1LG12g01330	Cucurbita maxima (Rimu)	cmacpeB810
Cp4.1LG12g01330	Cucurbita maxima (Rimu)	cmacpeB895
Cp4.1LG12g01330	Cucurbita moschata (Rifu)	cmocpeB223
Cp4.1LG12g01330	Cucurbita moschata (Rifu)	cmocpeB335
Cp4.1LG12g01330	Cucurbita moschata (Rifu)	cmocpeB549
Cp4.1LG12g01330	Cucurbita moschata (Rifu)	cmocpeB765
Cp4.1LG12g01330	Cucurbita moschata (Rifu)	cmocpeB833
Cp4.1LG12g01330	Wild cucumber (PI 183967)	cpecpiB135
Cp4.1LG12g01330	Cucumber (Chinese Long) v2	cpecuB134
Cp4.1LG12g01330	Bottle gourd (USVL1VR-Ls)	cpelsiB120
Cp4.1LG12g01330	Bottle gourd (USVL1VR-Ls)	cpelsiB124
Cp4.1LG12g01330	Watermelon (Charleston Gray)	cpewcgB138
Cp4.1LG12g01330	Watermelon (Charleston Gray)	cpewcgB144
Cp4.1LG12g01330	Watermelon (Charleston Gray)	cpewcgB150
Cp4.1LG12g01330	Watermelon (97103) v1	cpewmB147
Cp4.1LG12g01330	Watermelon (97103) v1	cpewmB151
Cp4.1LG12g01330	Melon (DHL92) v3.5.1	cpemeB143
Cp4.1LG12g01330	Cucumber (Gy14) v2	cgybcpeB175
Cp4.1LG12g01330	Cucumber (Gy14) v2	cgybcpeB302
Cp4.1LG12g01330	Melon (DHL92) v3.6.1	cpemedB170
Cp4.1LG12g01330	Silver-seed gourd	carcpeB0322
Cp4.1LG12g01330	Silver-seed gourd	carcpeB0331
Cp4.1LG12g01330	Silver-seed gourd	carcpeB1087
Cp4.1LG12g01330	Silver-seed gourd	carcpeB1328
Cp4.1LG12g01330	Silver-seed gourd	carcpeB1501
Cp4.1LG12g01330	Cucumber (Chinese Long) v3	cpecucB0153
Cp4.1LG12g01330	Wax gourd	cpewgoB0189
Cp4.1LG12g01330	Wax gourd	cpewgoB0196