Csa2G174080 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G174080
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein; contains IPR007087 (Zinc finger, C2H2)
Location	Chr2 : 9914046 .. 9914601 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCTCCTCCTCCCCCTCCCCCATGGCTGATTTCGCCCGACCAACCCCCGCCGATCTCCACCATCTCCGTCCACTTCCAATTCCCGGCAGTCCTCTCGTCGCCTGCCGAATCTGCGACGCTGTCTTTTCCAGTAGCCAGGCCCTAATTAACCACATCGGAGCTCACGTCTCCGACGAAGGCGCCACCTCCAGACGACCAGTACAGGATCAACAACGACGGTTTCCGGCAGGTCCGGCGTTCTTAACGGCGCCAAGAGCGACGGCGGTGTTTCTGCCAAACAGATATTCATCCCCTAATGGGATTGGGTTTGAGGGGGCGGAATCGGTTTGGGGAAATCAAATCTCTCCATTCGGAAGAAGTGTGTTTAGAGAGGGAGTGGCGGCGCCGTATCCTCCCCCGGGCTTGATGGGTCAGTACTTCACGAATTTGATTGCGATGGAGGAGGGAGGAGGGGGTGATTGTACGAAGCCTTACATAAATCAATTGGAGAAATGTTTGCCGAAAGTAAAGGGGGGAACGGAGGTGAAGAAGACGACTGCCGTCAACTGTATTTAA

mRNA sequence

ATGGCTGATTTCGCCCGACCAACCCCCGCCGATCTCCACCATCTCCGTCCACTTCCAATTCCCGGCAGTCCTCTCGTCGCCTGCCGAATCTGCGACGCTGTCTTTTCCAGTAGCCAGGCCCTAATTAACCACATCGGAGCTCACGTCTCCGACGAAGGCGCCACCTCCAGACGACCAGTACAGGATCAACAACGACGGTTTCCGGCAGGTCCGGCGTTCTTAACGGCGCCAAGAGCGACGGCGGTGTTTCTGCCAAACAGATATTCATCCCCTAATGGGATTGGGTTTGAGGGGGCGGAATCGGTTTGGGGAAATCAAATCTCTCCATTCGGAAGAAGTGTGTTTAGAGAGGGAGTGGCGGCGCCGTATCCTCCCCCGGGCTTGATGGGTCAGTACTTCACGAATTTGATTGCGATGGAGGAGGGAGGAGGGGGTGATTGTACGAAGCCTTACATAAATCAATTGGAGAAATGTTTGCCGAAAGTAAAGGGGGGAACGGAGGTGAAGAAGACGACTGCCGTCAACTGTATTTAA

Coding sequence (CDS)

ATGGCTGATTTCGCCCGACCAACCCCCGCCGATCTCCACCATCTCCGTCCACTTCCAATTCCCGGCAGTCCTCTCGTCGCCTGCCGAATCTGCGACGCTGTCTTTTCCAGTAGCCAGGCCCTAATTAACCACATCGGAGCTCACGTCTCCGACGAAGGCGCCACCTCCAGACGACCAGTACAGGATCAACAACGACGGTTTCCGGCAGGTCCGGCGTTCTTAACGGCGCCAAGAGCGACGGCGGTGTTTCTGCCAAACAGATATTCATCCCCTAATGGGATTGGGTTTGAGGGGGCGGAATCGGTTTGGGGAAATCAAATCTCTCCATTCGGAAGAAGTGTGTTTAGAGAGGGAGTGGCGGCGCCGTATCCTCCCCCGGGCTTGATGGGTCAGTACTTCACGAATTTGATTGCGATGGAGGAGGGAGGAGGGGGTGATTGTACGAAGCCTTACATAAATCAATTGGAGAAATGTTTGCCGAAAGTAAAGGGGGGAACGGAGGTGAAGAAGACGACTGCCGTCAACTGTATTTAA

Protein sequence

MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRPVQDQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGRSVFREGVAAPYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKGGTEVKKTTAVNCI*

Homology

[Close]

BLAST of Csa2G174080 vs. TrEMBL
Match: A0A0A0LNN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G174080 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.5e-99
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1


Query: 1   MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRPV 60
           MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRPV
Sbjct: 1   MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRPV 60

Query: 61  QDQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGRSVFREGVA 120
           QDQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGRSVFREGVA
Sbjct: 61  QDQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGRSVFREGVA 120

Query: 121 APYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKGGTEVKKTTAVNCI 178
           APYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKGGTEVKKTTAVNCI
Sbjct: 121 APYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKGGTEVKKTTAVNCI 177

[Close]

BLAST of Csa2G174080 vs. TrEMBL
Match: M5XVD2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021272mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-07
Identity = 54/172 (31.40%), Postives = 77/172 (44.77%), Query Frame = 1


Query: 17  PLPIP-GSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRPVQDQQRRFPAGPAFLT 76
           P  +P GS  +ACRICD VF S+QALINHI +H+ D+G T+ R  Q  Q+     P    
Sbjct: 21  PASMPSGSTEIACRICDRVFMSTQALINHIESHIVDDGLTASRLRQLTQQTNTNPPI--- 80

Query: 77  APRATAVF-LPNRYSSPNGIGFEGAESVWGNQIS-----PFGRSVFREGVAAPYPPP--- 136
             R    F L N +   N         V  NQI      P  +  + +   +PY  P   
Sbjct: 81  --RGNPAFPLQNPFHQRNPF-----HDVHNNQIGFAPPPPHHQYPYPQQQLSPYALPRNV 140

Query: 137 ------GLMGQYF----------TNLIAMEEGGGGDCTKPYINQLEKCLPKV 163
                 G++G ++            + + E+    DCT P ++QLE+ LP V
Sbjct: 141 NVNVNQGVVGSHYMVMQSANQTAARMASEEDDLSSDCTMPLLSQLERPLPPV 182

[Close]

BLAST of Csa2G174080 vs. NCBI nr
Match: gi|700206472|gb|KGN61591.1| (hypothetical protein Csa_2G174080 [Cucumis sativus])

HSP 1 Score: 370.2 bits (949), Expect = 2.1e-99
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1


Query: 1   MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRPV 60
           MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRPV
Sbjct: 1   MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRPV 60

Query: 61  QDQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGRSVFREGVA 120
           QDQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGRSVFREGVA
Sbjct: 61  QDQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGRSVFREGVA 120

Query: 121 APYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKGGTEVKKTTAVNCI 178
           APYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKGGTEVKKTTAVNCI
Sbjct: 121 APYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKGGTEVKKTTAVNCI 177

[Close]

BLAST of Csa2G174080 vs. NCBI nr
Match: gi|645235578|ref|XP_008224336.1| (PREDICTED: uncharacterized protein LOC103324080 [Prunus mume])

HSP 1 Score: 66.6 bits (161), Expect = 4.9e-08
Identity = 55/172 (31.98%), Postives = 80/172 (46.51%), Query Frame = 1


Query: 17  PLPIP-GSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRPVQDQQRRFPAGPAFLT 76
           P  +P GS  +ACRICD VF S+QALINHI +H+ D+G T+ R  Q  Q+     P    
Sbjct: 14  PASMPSGSTEIACRICDRVFMSTQALINHIESHIVDDGLTASRLRQLTQQTNTNPPI--- 73

Query: 77  APRATAVF-LPNRYSSPNGIGFEGAESVWGNQIS-----PFGRSVFREGVAAPYPPP--- 136
             R+  VF L N ++  N         V  NQI      P  +  + +   +PY  P   
Sbjct: 74  --RSNPVFPLSNPFNQRNPF-----HDVHNNQIGFAPPPPHHQYPYPQQQLSPYALPRNV 133

Query: 137 ------GLMGQYF----------TNLIAMEEGGGGDCTKPYINQLEKCLPKV 163
                 G++G ++            + + E+    DCT P ++QLE+ LP V
Sbjct: 134 NVNVNQGVVGSHYMVMQSANETAARMASEEDNLSSDCTMPLLSQLERPLPPV 175

[Close]

BLAST of Csa2G174080 vs. NCBI nr
Match: gi|596238260|ref|XP_007224424.1| (hypothetical protein PRUPE_ppa021272mg [Prunus persica])

HSP 1 Score: 63.5 bits (153), Expect = 4.2e-07
Identity = 54/172 (31.40%), Postives = 77/172 (44.77%), Query Frame = 1


Query: 17  PLPIP-GSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRPVQDQQRRFPAGPAFLT 76
           P  +P GS  +ACRICD VF S+QALINHI +H+ D+G T+ R  Q  Q+     P    
Sbjct: 21  PASMPSGSTEIACRICDRVFMSTQALINHIESHIVDDGLTASRLRQLTQQTNTNPPI--- 80

Query: 77  APRATAVF-LPNRYSSPNGIGFEGAESVWGNQIS-----PFGRSVFREGVAAPYPPP--- 136
             R    F L N +   N         V  NQI      P  +  + +   +PY  P   
Sbjct: 81  --RGNPAFPLQNPFHQRNPF-----HDVHNNQIGFAPPPPHHQYPYPQQQLSPYALPRNV 140

Query: 137 ------GLMGQYF----------TNLIAMEEGGGGDCTKPYINQLEKCLPKV 163
                 G++G ++            + + E+    DCT P ++QLE+ LP V
Sbjct: 141 NVNVNQGVVGSHYMVMQSANQTAARMASEEDDLSSDCTMPLLSQLERPLPPV 182

The following BLAST results are available for this feature:

BLAST of Csa2G174080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNN3_CUCSA	1.5e-99	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G174080 PE=4 SV=1	[more]
M5XVD2_PRUPE	2.9e-07	31.40	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021272mg PE=4 SV=1	[more]

BLAST of Csa2G174080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206472\|gb\|KGN61591.1\|	2.1e-99	100.00	hypothetical protein Csa_2G174080 [Cucumis sativus]	[more]
gi\|645235578\|ref\|XP_008224336.1\|	4.9e-08	31.98	PREDICTED: uncharacterized protein LOC103324080 [Prunus mume]	[more]
gi\|596238260\|ref\|XP_007224424.1\|	4.2e-07	31.40	hypothetical protein PRUPE_ppa021272mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G174080.1	Csa2G174080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 28..48 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 26..53 score: 8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G174080	Cla007595	Watermelon (97103) v1	cuwmB172
Csa2G174080	MELO3C023008	Melon (DHL92) v3.5.1	cumeB131
Csa2G174080	Lsi09G012260	Bottle gourd (USVL1VR-Ls)	culsiB087
Csa2G174080	MELO3C023008.2	Melon (DHL92) v3.6.1	cumedB134
Csa2G174080	Cla97C06G116770	Watermelon (97103) v2	cuwmbB147
Csa2G174080	Bhi12G001418	Wax gourd	cuwgoB121
Csa2G174080	CSPI02G10250	Wild cucumber (PI 183967)	cpicuB065
Csa2G174080	CmaCh17G001560	Cucurbita maxima (Rimu)	cmacuB350
Csa2G174080	Cp4.1LG12g01330	Cucurbita pepo (Zucchini)	cpecuB127

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G174080	Cucumber (Chinese Long) v2	cucuB050
Csa2G174080	Cucumber (Gy14) v1	cgycuB362
Csa2G174080	Cucumber (Gy14) v1	cgycuB536
Csa2G174080	Cucurbita maxima (Rimu)	cmacuB238
Csa2G174080	Cucurbita maxima (Rimu)	cmacuB508
Csa2G174080	Cucurbita maxima (Rimu)	cmacuB585
Csa2G174080	Cucurbita maxima (Rimu)	cmacuB813
Csa2G174080	Cucurbita maxima (Rimu)	cmacuB881
Csa2G174080	Cucurbita moschata (Rifu)	cmocuB225
Csa2G174080	Cucurbita moschata (Rifu)	cmocuB339
Csa2G174080	Cucurbita moschata (Rifu)	cmocuB497
Csa2G174080	Cucurbita moschata (Rifu)	cmocuB576
Csa2G174080	Cucurbita moschata (Rifu)	cmocuB805
Csa2G174080	Cucurbita moschata (Rifu)	cmocuB868
Csa2G174080	Melon (DHL92) v3.5.1	cumeB124
Csa2G174080	Melon (DHL92) v3.5.1	cumeB145
Csa2G174080	Watermelon (Charleston Gray)	cuwcgB136
Csa2G174080	Watermelon (Charleston Gray)	cuwcgB153
Csa2G174080	Watermelon (Charleston Gray)	cuwcgB160
Csa2G174080	Watermelon (97103) v1	cuwmB116
Csa2G174080	Watermelon (97103) v1	cuwmB122
Csa2G174080	Cucurbita pepo (Zucchini)	cpecuB237
Csa2G174080	Cucurbita pepo (Zucchini)	cpecuB306
Csa2G174080	Cucurbita pepo (Zucchini)	cpecuB596
Csa2G174080	Cucurbita pepo (Zucchini)	cpecuB715
Csa2G174080	Cucurbita pepo (Zucchini)	cpecuB849
Csa2G174080	Bottle gourd (USVL1VR-Ls)	culsiB127
Csa2G174080	Bottle gourd (USVL1VR-Ls)	culsiB129
Csa2G174080	Cucumber (Gy14) v2	cgybcuB056
Csa2G174080	Cucumber (Gy14) v2	cgybcuB101
Csa2G174080	Melon (DHL92) v3.6.1	cumedB122
Csa2G174080	Melon (DHL92) v3.6.1	cumedB137
Csa2G174080	Silver-seed gourd	carcuB0254
Csa2G174080	Silver-seed gourd	carcuB0261
Csa2G174080	Silver-seed gourd	carcuB0766
Csa2G174080	Silver-seed gourd	carcuB0793
Csa2G174080	Silver-seed gourd	carcuB0974
Csa2G174080	Silver-seed gourd	carcuB1090
Csa2G174080	Watermelon (97103) v2	cuwmbB131
Csa2G174080	Watermelon (97103) v2	cuwmbB154
Csa2G174080	Wax gourd	cuwgoB143
Csa2G174080	Wax gourd	cuwgoB148