Cla007595 (gene) Watermelon (97103) v1

NameCla007595
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type
LocationChr6 : 8130785 .. 8131336 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAATTTGGCCGAGGAACCGCCGCCGATCTCCACCATCTACGCCCTCTTCCAATTCCCGGCAGTCCGCTTGTCGCTTGCCGAATCTGCGACGCTGTGTTTTCCAGTAGCCAAGCGCTAATTAACCACATCGGAGCTCACGTGTCCGATGAAGGCGCCACCTCCGCCGCAGCTTCCAGAAGACAGAATCAACAACGAAGCCAAACGCATCGGTTTCCGCCTGGTCCCCCGTTCTTAACGCCGCCACGAGCGTCGGCGCTGTTTCTGCCAAGTAGATTTTCAGCGCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCAAATCAACTCTCTCCATTCGCAAGAAGCCTGTTTAGAGAGGCGCCGCCGCCCGTCGGTCGGTACTTTACGAATTTGATTGTGACGGAGGAGGCGGTCGGCGATTGTACGAAGCCTTATATAAACCAATTGGAGAAATGTTTACCGAAAGTGGGCGACGGAGGTGAAGAAGACGACGGCCGTCAACTGTATTTCAGCAAACTAGACTTGACCCTGAAGCTGTGA

mRNA sequence

ATGGCTGAATTTGGCCGAGGAACCGCCGCCGATCTCCACCATCTACGCCCTCTTCCAATTCCCGGCAGTCCGCTTGTCGCTTGCCGAATCTGCGACGCTGTGTTTTCCAGTAGCCAAGCGCTAATTAACCACATCGGAGCTCACGTGTCCGATGAAGGCGCCACCTCCGCCGCAGCTTCCAGAAGACAGAATCAACAACGAAGCCAAACGCATCGGTTTCCGCCTGGTCCCCCGTTCTTAACGCCGCCACGAGCGTCGGCGCTGTTTCTGCCAAGTAGATTTTCAGCGCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCAAATCAACTCTCTCCATTCGCAAGAAGCCTGTTTAGAGAGGCGCCGCCGCCCGTCGGTCGGTACTTTACGAATTTGATTGTGACGGAGGAGGCGGTCGGCGATTGTACGAAGCCTTATATAAACCAATTGGAGAAATGTTTACCGAAAGTGGGCGACGGAGGTGAAGAAGACGACGGCCGTCAACTGTATTTCAGCAAACTAGACTTGACCCTGAAGCTGTGA

Coding sequence (CDS)

ATGGCTGAATTTGGCCGAGGAACCGCCGCCGATCTCCACCATCTACGCCCTCTTCCAATTCCCGGCAGTCCGCTTGTCGCTTGCCGAATCTGCGACGCTGTGTTTTCCAGTAGCCAAGCGCTAATTAACCACATCGGAGCTCACGTGTCCGATGAAGGCGCCACCTCCGCCGCAGCTTCCAGAAGACAGAATCAACAACGAAGCCAAACGCATCGGTTTCCGCCTGGTCCCCCGTTCTTAACGCCGCCACGAGCGTCGGCGCTGTTTCTGCCAAGTAGATTTTCAGCGCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCAAATCAACTCTCTCCATTCGCAAGAAGCCTGTTTAGAGAGGCGCCGCCGCCCGTCGGTCGGTACTTTACGAATTTGATTGTGACGGAGGAGGCGGTCGGCGATTGTACGAAGCCTTATATAAACCAATTGGAGAAATGTTTACCGAAAGTGGGCGACGGAGGTGAAGAAGACGACGGCCGTCAACTGTATTTCAGCAAACTAGACTTGACCCTGAAGCTGTGA

Protein sequence

MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSLGFDAAESLWPNQLSPFARSLFREAPPPVGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYFSKLDLTLKL
BLAST of Cla007595 vs. TrEMBL
Match: A0A0A0LNN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G174080 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 7.5e-59
Identity = 125/175 (71.43%), Postives = 139/175 (79.43%), Query Frame = 1

Query: 1   MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 60
           MA+F R T ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGAT    S
Sbjct: 1   MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGAT----S 60

Query: 61  RR--QNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSLGFDAAESLWPNQLSPFAR 120
           RR  Q+QQR    RFP GP FLT PRA+A+FLP+R+S+PN +GF+ AES+W NQ+SPF R
Sbjct: 61  RRPVQDQQR----RFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGR 120

Query: 121 SLFREA-----PPP--VGRYFTNLIVTEE-AVGDCTKPYINQLEKCLPKVGDGGE 166
           S+FRE      PPP  +G+YFTNLI  EE   GDCTKPYINQLEKCLPKV  G E
Sbjct: 121 SVFREGVAAPYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKGGTE 167

BLAST of Cla007595 vs. TrEMBL
Match: M5XVD2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021272mg PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.6e-08
Identity = 65/196 (33.16%), Postives = 85/196 (43.37%), Query Frame = 1

Query: 17  PLPIP-GSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFPP 76
           P  +P GS  +ACRICD VF S+QALINHI +H+ D+G T++    R  Q   QT+  PP
Sbjct: 21  PASMPSGSTEIACRICDRVFMSTQALINHIESHIVDDGLTAS----RLRQLTQQTNTNPP 80

Query: 77  --GPPFLTPPRASALFLPSRFSAPNSLGF--DAAESLWP---NQLSPFARSLFREAPPPV 136
             G P            P      N +GF        +P    QLSP+A           
Sbjct: 81  IRGNPAFPLQNPFHQRNPFHDVHNNQIGFAPPPPHHQYPYPQQQLSPYALPRNVNVNVNQ 140

Query: 137 GRYFTNLIVTEEA--------------VGDCTKPYINQLEKCLPKV-------GDGGEED 184
           G   ++ +V + A                DCT P ++QLE+ LP V       G+ GE  
Sbjct: 141 GVVGSHYMVMQSANQTAARMASEEDDLSSDCTMPLLSQLERPLPPVNYELDHRGNIGEAS 200

BLAST of Cla007595 vs. TrEMBL
Match: A5AZH3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014305 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.9e-08
Identity = 55/183 (30.05%), Postives = 92/183 (50.27%), Query Frame = 1

Query: 14  HLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS----RRQNQQRSQ 73
           H++  P   SP +ACR+CD +F SS+AL+NH+ +H++++G+ S          Q +    
Sbjct: 6   HVKQRP---SPQIACRVCDRIFMSSRALVNHLESHMAEDGSISTTQQINFIPHQREGYVS 65

Query: 74  THRFPPGPPFLTPPRASALFLPSRFSA---PNSLGFDAAESLWPNQLS----PFARS--L 133
            ++F     F T  + + L + +  S    P   G +   S     +S     FARS   
Sbjct: 66  VNQFQSNLSFQTLLQETRLSIRNSNSLVQNPAGTGKNPIISATQFDVSSLQLQFARSNHS 125

Query: 134 FREAPPPVGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYFSKLDLT 184
           FR    P  +  +  ++ E+ + + TKPYI+ L+K +P++ +  E DD       K+DLT
Sbjct: 126 FRPQLLPSLKQASQRVI-EQHLSEFTKPYIDLLDKPIPEIVELVESDD----VGKKVDLT 180

BLAST of Cla007595 vs. TrEMBL
Match: V4U2N5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006678mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06
Identity = 56/190 (29.47%), Postives = 85/190 (44.74%), Query Frame = 1

Query: 17  PLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQ------- 76
           P P      +ACRIC+ VF S+ +LINHI  H+ +      AA+RRQN+  +Q       
Sbjct: 2   PFPKTQQQQIACRICNKVFLSTHSLINHIETHMVN---NETAAARRQNELINQFATNPNF 61

Query: 77  ----THRFPPGP--PFLTPPRASALFLPSRFSAPNSLGFDAAESLWPNQLSPFARS--LF 136
               T + PP P  P +   R +   + + F  PN       +  WP   +  +R   +F
Sbjct: 62  YNNFTLQTPPPPTQPPIHSGRIAQEIIRNPFLFPNPQSLLNHQGPWPVPPTNLSRKNLVF 121

Query: 137 REAPPPVGRYFTNLIVTEEAVGDC-----TKPYINQLEKCLP---KVGDGGEEDDGRQLY 184
                P   +    +  ++ +        TKP I+QL+K +P   + GDG     G ++ 
Sbjct: 122 GPQLQPHSVFGQQAVRIQQQLSSSSSDRFTKPLIDQLQKKIPAAERYGDGNNRVFGSEM- 181

BLAST of Cla007595 vs. NCBI nr
Match: gi|700206472|gb|KGN61591.1| (hypothetical protein Csa_2G174080 [Cucumis sativus])

HSP 1 Score: 235.0 bits (598), Expect = 1.1e-58
Identity = 125/175 (71.43%), Postives = 139/175 (79.43%), Query Frame = 1

Query: 1   MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS 60
           MA+F R T ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGAT    S
Sbjct: 1   MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGAT----S 60

Query: 61  RR--QNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSLGFDAAESLWPNQLSPFAR 120
           RR  Q+QQR    RFP GP FLT PRA+A+FLP+R+S+PN +GF+ AES+W NQ+SPF R
Sbjct: 61  RRPVQDQQR----RFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGR 120

Query: 121 SLFREA-----PPP--VGRYFTNLIVTEE-AVGDCTKPYINQLEKCLPKVGDGGE 166
           S+FRE      PPP  +G+YFTNLI  EE   GDCTKPYINQLEKCLPKV  G E
Sbjct: 121 SVFREGVAAPYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKGGTE 167

BLAST of Cla007595 vs. NCBI nr
Match: gi|596238260|ref|XP_007224424.1| (hypothetical protein PRUPE_ppa021272mg [Prunus persica])

HSP 1 Score: 66.2 bits (160), Expect = 6.6e-08
Identity = 65/196 (33.16%), Postives = 85/196 (43.37%), Query Frame = 1

Query: 17  PLPIP-GSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFPP 76
           P  +P GS  +ACRICD VF S+QALINHI +H+ D+G T++    R  Q   QT+  PP
Sbjct: 21  PASMPSGSTEIACRICDRVFMSTQALINHIESHIVDDGLTAS----RLRQLTQQTNTNPP 80

Query: 77  --GPPFLTPPRASALFLPSRFSAPNSLGF--DAAESLWP---NQLSPFARSLFREAPPPV 136
             G P            P      N +GF        +P    QLSP+A           
Sbjct: 81  IRGNPAFPLQNPFHQRNPFHDVHNNQIGFAPPPPHHQYPYPQQQLSPYALPRNVNVNVNQ 140

Query: 137 GRYFTNLIVTEEA--------------VGDCTKPYINQLEKCLPKV-------GDGGEED 184
           G   ++ +V + A                DCT P ++QLE+ LP V       G+ GE  
Sbjct: 141 GVVGSHYMVMQSANQTAARMASEEDDLSSDCTMPLLSQLERPLPPVNYELDHRGNIGEAS 200

BLAST of Cla007595 vs. NCBI nr
Match: gi|147845730|emb|CAN80617.1| (hypothetical protein VITISV_014305 [Vitis vinifera])

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 55/183 (30.05%), Postives = 92/183 (50.27%), Query Frame = 1

Query: 14  HLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAAS----RRQNQQRSQ 73
           H++  P   SP +ACR+CD +F SS+AL+NH+ +H++++G+ S          Q +    
Sbjct: 6   HVKQRP---SPQIACRVCDRIFMSSRALVNHLESHMAEDGSISTTQQINFIPHQREGYVS 65

Query: 74  THRFPPGPPFLTPPRASALFLPSRFSA---PNSLGFDAAESLWPNQLS----PFARS--L 133
            ++F     F T  + + L + +  S    P   G +   S     +S     FARS   
Sbjct: 66  VNQFQSNLSFQTLLQETRLSIRNSNSLVQNPAGTGKNPIISATQFDVSSLQLQFARSNHS 125

Query: 134 FREAPPPVGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYFSKLDLT 184
           FR    P  +  +  ++ E+ + + TKPYI+ L+K +P++ +  E DD       K+DLT
Sbjct: 126 FRPQLLPSLKQASQRVI-EQHLSEFTKPYIDLLDKPIPEIVELVESDD----VGKKVDLT 180

BLAST of Cla007595 vs. NCBI nr
Match: gi|645235578|ref|XP_008224336.1| (PREDICTED: uncharacterized protein LOC103324080 [Prunus mume])

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-07
Identity = 66/200 (33.00%), Postives = 90/200 (45.00%), Query Frame = 1

Query: 17  PLPIP-GSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFPP 76
           P  +P GS  +ACRICD VF S+QALINHI +H+ D+G T  A+  RQ  Q++ T+    
Sbjct: 14  PASMPSGSTEIACRICDRVFMSTQALINHIESHIVDDGLT--ASRLRQLTQQTNTN---- 73

Query: 77  GPPFLTPPRASALFLPSRFSAP------NSLGF--DAAESLWP---NQLSPFARSLFREA 136
            PP  + P    L  P     P      N +GF        +P    QLSP+A       
Sbjct: 74  -PPIRSNP-VFPLSNPFNQRNPFHDVHNNQIGFAPPPPHHQYPYPQQQLSPYALPRNVNV 133

Query: 137 PPPVGRYFTNLIVTEEA--------------VGDCTKPYINQLEKCLP-------KVGDG 184
               G   ++ +V + A                DCT P ++QLE+ LP       ++G+ 
Sbjct: 134 NVNQGVVGSHYMVMQSANETAARMASEEDNLSSDCTMPLLSQLERPLPPVNYELDRLGNI 193

BLAST of Cla007595 vs. NCBI nr
Match: gi|567854279|ref|XP_006420259.1| (hypothetical protein CICLE_v10006678mg [Citrus clementina])

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-06
Identity = 56/190 (29.47%), Postives = 85/190 (44.74%), Query Frame = 1

Query: 17  PLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQ------- 76
           P P      +ACRIC+ VF S+ +LINHI  H+ +      AA+RRQN+  +Q       
Sbjct: 2   PFPKTQQQQIACRICNKVFLSTHSLINHIETHMVN---NETAAARRQNELINQFATNPNF 61

Query: 77  ----THRFPPGP--PFLTPPRASALFLPSRFSAPNSLGFDAAESLWPNQLSPFARS--LF 136
               T + PP P  P +   R +   + + F  PN       +  WP   +  +R   +F
Sbjct: 62  YNNFTLQTPPPPTQPPIHSGRIAQEIIRNPFLFPNPQSLLNHQGPWPVPPTNLSRKNLVF 121

Query: 137 REAPPPVGRYFTNLIVTEEAVGDC-----TKPYINQLEKCLP---KVGDGGEEDDGRQLY 184
                P   +    +  ++ +        TKP I+QL+K +P   + GDG     G ++ 
Sbjct: 122 GPQLQPHSVFGQQAVRIQQQLSSSSSDRFTKPLIDQLQKKIPAAERYGDGNNRVFGSEM- 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LNN3_CUCSA7.5e-5971.43Uncharacterized protein OS=Cucumis sativus GN=Csa_2G174080 PE=4 SV=1[more]
M5XVD2_PRUPE4.6e-0833.16Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021272mg PE=4 SV=1[more]
A5AZH3_VITVI7.9e-0830.05Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014305 PE=4 SV=1[more]
V4U2N5_9ROSI1.5e-0629.47Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006678mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700206472|gb|KGN61591.1|1.1e-5871.43hypothetical protein Csa_2G174080 [Cucumis sativus][more]
gi|596238260|ref|XP_007224424.1|6.6e-0833.16hypothetical protein PRUPE_ppa021272mg [Prunus persica][more]
gi|147845730|emb|CAN80617.1|1.1e-0730.05hypothetical protein VITISV_014305 [Vitis vinifera][more]
gi|645235578|ref|XP_008224336.1|1.9e-0733.00PREDICTED: uncharacterized protein LOC103324080 [Prunus mume][more]
gi|567854279|ref|XP_006420259.1|2.1e-0629.47hypothetical protein CICLE_v10006678mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007087Zinc finger, C2H2
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla007595Cla007595.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 28..48
scor
IPR007087Zinc finger, C2H2PROFILEPS50157ZINC_FINGER_C2H2_2coord: 26..53
score: 8

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla007595Silver-seed gourdcarwmB0219
Cla007595Silver-seed gourdcarwmB0224
Cla007595Silver-seed gourdcarwmB0753
Cla007595Silver-seed gourdcarwmB0785
Cla007595Silver-seed gourdcarwmB0962
Cla007595Silver-seed gourdcarwmB1077
Cla007595Cucumber (Chinese Long) v3cucwmB288
Cla007595Watermelon (97103) v2wmwmbB402
Cla007595Watermelon (97103) v2wmwmbB413
Cla007595Wax gourdwgowmB239
Cla007595Wax gourdwgowmB288
Cla007595Watermelon (97103) v1wmwmB116
Cla007595Watermelon (97103) v1wmwmB138
Cla007595Cucumber (Gy14) v1cgywmB483
Cla007595Cucumber (Gy14) v1cgywmB691
Cla007595Cucurbita maxima (Rimu)cmawmB250
Cla007595Cucurbita maxima (Rimu)cmawmB507
Cla007595Cucurbita maxima (Rimu)cmawmB611
Cla007595Cucurbita maxima (Rimu)cmawmB811
Cla007595Cucurbita maxima (Rimu)cmawmB878
Cla007595Cucurbita moschata (Rifu)cmowmB239
Cla007595Cucurbita moschata (Rifu)cmowmB353
Cla007595Cucurbita moschata (Rifu)cmowmB500
Cla007595Cucurbita moschata (Rifu)cmowmB604
Cla007595Cucurbita moschata (Rifu)cmowmB802
Cla007595Cucurbita moschata (Rifu)cmowmB867
Cla007595Melon (DHL92) v3.5.1mewmB486
Cla007595Melon (DHL92) v3.5.1mewmB390
Cla007595Watermelon (Charleston Gray)wcgwmB311
Cla007595Watermelon (Charleston Gray)wcgwmB344
Cla007595Watermelon (Charleston Gray)wcgwmB395
Cla007595Cucumber (Chinese Long) v2cuwmB279
Cla007595Cucurbita pepo (Zucchini)cpewmB271
Cla007595Cucurbita pepo (Zucchini)cpewmB334
Cla007595Cucurbita pepo (Zucchini)cpewmB622
Cla007595Cucurbita pepo (Zucchini)cpewmB752
Cla007595Cucurbita pepo (Zucchini)cpewmB853
Cla007595Bottle gourd (USVL1VR-Ls)lsiwmB382
Cla007595Bottle gourd (USVL1VR-Ls)lsiwmB383
Cla007595Cucumber (Gy14) v2cgybwmB163
Cla007595Cucumber (Gy14) v2cgybwmB262
Cla007595Melon (DHL92) v3.6.1medwmB384
Cla007595Melon (DHL92) v3.6.1medwmB474