Cp4.1LG12g01190 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g01190
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
LocationCp4.1LG12 : 702057 .. 705889 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTTCACCTGCGGGTGAGATGATGGTAGCAACGTGGCGTTTTCTTATTTGGCAGCAAAGTGGGCTTTCATACGCTCGGGTTCCACCCTCTGCATTCTACTTGAGCCTCTTTACTTCGTCTCTTTCGGGTTCTTTCGTTCTCGAAACCTCCCAATTCCCAAATCTCAGTTCTCCATTACAGCCAGCTCTTGATTCGTTCACTTGATCATCGAAGCAGCTCTCTGAGATGACGGAGGCCGCGATTCGTAAGAAGCCTGGCATGGCCAGCGTCAAAGACATGCCGATCCTCCAGGACGGGCCACCGCCGGGTGGATTCGCTCCGGTTCGTTATGCTCGCCGGATTCCCACCAAAGGCCCTAGCGCTATGGCGATTTTCCTTACTGCGTTTGGTGCGTTTTCTTGGGGAATGTATCAGGTCGGCAAAGGCAACAAGATCCGAAGGTCTGATTTCTCTCTCCCATTATCTTAGTTTAATCCATGGTCATTTCCTGTTTTATATCATTCCACTAGTAATGGGATTTACTGCTTTTCTATCTGGATTTCCTCTTTTCTGCGAATTAAGGGGTGGGTTAGCTTGGGATGTATTAGACTTCTTGACCCAGGATTTCTGCGAATTAAGGGGTGAGTTAGCTTGGGATGTATTAGACTTCTTGACCCAGGATTTCTGCTAGGGATTTGATTATTTTTATTGACTTTCGAGATTCATGCTTTGTGCTAGGCTGTTTTGGATTTTACCGATTTGCCGGGTAGATGCCTTGAAGCGAATTTCCATTGAGAGTTTAGGTTTGATACCTGGATTTGATTCAGTTTCAAGTCATTTGGTTTTTTGAAAAGAAATTAACACTTTCTTAGCTACTTTAATTGAGGGTGGTTTGAGGCCGCATCTCCATTCCTCTTTTGCATCCCGTTTTGAATCTGATGATGAAGTTTAAGTTTCGTACATACATTAAAACACCTTCAAAACTACACTTAGTTTGAAAATTGCCCAACGAAGGAGTTCTTCTTTAATACAATTAGAAGATTACATACTTGCATAATAACATTTTTCATTCATAAGAACTATTCTTATGAACAATGAACCACTCCATAATTTCAGACTGGCATAGTATTGTCCACTTTTGAATATAAACTTTCATGACTTTGCTTTTGACTTCACTAAAATTATCTCATACCATTGGAGATAATTGTCCCATTTATACATGTTATCTTCAAACGGAGGACCACTGAGCCTTTCTTCAAGCACACCACATGTCTTATATAGCTTAATCACTGATCTTCACGTAACTATGTCATTGAGGCTCATCACTATCCACATGTTTAGATTCGAAGGATTTAATCGACATGTTTAAGTTTGGGGTATGCCTTTCTTACCATTTGTTAAGGATGATCATGCAAATGGAAATAGTTACTCTTACTTATATACTTACAATCTTCTTCTTATCTTACGACTTTGGTTGTCCTCACAACAAAAATGTTGTCAAAATTAGTTTTTTCTCTTCATGTAACAACCCAAGCCCACCGCTAGCAGATATTGTCAGCGTTAGCCTGTTTATCGCCAAAAAGCCTCAGGGTTTTAAAATGTGTCTGTTAGGGAGAGTTTTCCACACCCTTATAAAGAATGTTTTGTTCCCCTCTCCAACGGATGTGGGATCTCACAATCCACCCCCTTTGGTGGCCCAGGGTCCTCGTTGGCACACTGGCCGGTGCCTAGCTATGATATTGTGAGGACACATCGCACGTCTGTTTTTGCCTGTTACGTATCGATGTCAGCCTCATGTTACCTTTATAGGTAGAAGTTTTCACATTTTTATAAGGAATGTTTCGTTTCTCTCTCCAACCGAGGTGGGATTTCACACTACACAAAATGGGGTAACTTAACTCATTGGTTTTTTTTTTCTTTTTTTTGGTAAGAAATTGCGCTTTCTTTGAGAAAATAAGAGAATACATAGGCAAACAAAAAACGAGCCTAAACAAATTTTTAAAAATGTCTCCAATCCAAAAGAACAAGGCCAAGATCAGGCATAGTGACCGAGACCTAAAAGAAGGCTTTAAATTTAACCACCTCACCCACTCTCTCAACTCCTCACAATTTCTGTTATGTTTTTTTCTAACCAAATATCCCACAAAAGAGCAAAGAAGCTAGTTTGCCACAAGACTTTACCTCTTTCCTTAAAAGAGGATTCAAAAGCACCTCCTCAACAACAAGCAACCATCCTGACCCTGAGCACAACGCACACCAAACAAGGATTTCCAACGATCCCAAAGAAACTGAGCAAATTGGAAGTTAAATATTCAAATTGATTCATTTAGTTTAGAATAGGTGATAAAAGTAAAATTTGCCCTAATTATTTGATTGTTGCAAGAAATGGTTATTTGAGGACTTGATAGGTGGACAAAGATCTCAGGTAGATGTCTTATGTGCTTCTATTTAACATCAGAGAACCTTTGGTATAATGTTACAAATGCACCTGTTTTGTTTTCAAGGTACGTGAAATATAGTTGGGTAGATATATTGGCATGAATTTCAATTTTAAATTACTACCTTACTTGTTTATTTGTTTAATTTGCCTGGTCTGTTGTTCTCGCATTAAATTATTGCAACAGAATTTCTAGAATGAGCTCAATGTGATTTCAATTTCATATTCATGTTTAGACTTGATCATCAGTCTACATTATTTGTAAAGGAGGAGTGATTATAGTTTCTTCGTACATTGAAGGCCTTTTATGGTATTTACAGATAGTTTAAAGGAATAGTCTTTCCTGCTTTCCTCTGTTCCCTTCTTTTCCTTTTGCTTGAACGAGGTGAGAGTGGTGACCCATTTGGTTGGGGGAAATGGTGAAGATGATGTCATGCTGTTTCATTCGACCTGTCGTTTCTTACTGTTTATGATTGGTTTAATAAGTTTATATTACTCTTTTGTTGCAAACTATGAATTTCACAATGAGCATTGACGATGTGTATAGGGCACTAAAGGAAGAGAAATATGCAGCCCGACGAGCAATATTGCCCGTGCTTCAAGCCGAGGAAGATGAAAGGTAAATGGATGATTTTTTGTGTAGGCTGCCCTCAAACTTACAGTAACACTGGTTGAAACTACTGGATCCTTGACGGTTTTAACGAAGTTTAGTATCATTGGTCTAATCGTGTCTGTTCTAACTTTCTAACTTTCTAGATTCGTCAAAGAGTGGAAGAGTTACCTTGAATATGAGGCTGAAGTTATGAAGGATGTGCCTGGTTGGAAAGTTGGTGAAAATGTCTACAACTCTGGAAAATGGATGCCTCCAGCGACCGGTGAGCTACGACCCGAAGTCTGGTGATTTTGTTTCGAACACGGACTTCTTTGAGGTTGGCATGTAGTTTGTTTGTGTATGCGCTGCGACTTATATCCTCATATGGGTTTGTTTCCTGATTTGCTGGTTCTTCATGGCCCTTCTCATGAAAATAAAAGAAGCATGTCAAAATTTCTTCAAATGTTTTGCAAAAACTGTCTTCTTTATTCAGTAAACATCTCCTTTTACCCATGTATCTCACTGAAAGTTGGGACTTGGAATTAGACATCAATTTATCTTCATTCTTCTTATTTATTTCTTGTATGCCAAGCTGAACAGCATGCTTACCCTAGTCGGTTGCGACTTTGGTTCGGTCGATACTCGTAGTAAGTTGAGGCTTTTGAGCTACAATGTGCTTAGAAGGAACTTGAAATTGGCATGTGTAAGTTGATAGAACCCCAGAGGACTTGTAGTGTGTGAGACTTGCGTGATAACCAAATACACCACTCGGATCATATATTTATCATAAATATTATATTTCAAATTATATTTATGTGAAGGTAA

mRNA sequence

CGTTCACCTGCGGGTGAGATGATGGTAGCAACGTGGCGTTTTCTTATTTGGCAGCAAAGTGGGCTTTCATACGCTCGGGTTCCACCCTCTGCATTCTACTTGAGCCTCTTTACTTCGTCTCTTTCGGGTTCTTTCGTTCTCGAAACCTCCCAATTCCCAAATCTCAGTTCTCCATTACAGCCAGCTCTTGATTCGTTCACTTGATCATCGAAGCAGCTCTCTGAGATGACGGAGGCCGCGATTCGTAAGAAGCCTGGCATGGCCAGCGTCAAAGACATGCCGATCCTCCAGGACGGGCCACCGCCGGGTGGATTCGCTCCGGTTCGTTATGCTCGCCGGATTCCCACCAAAGGCCCTAGCGCTATGGCGATTTTCCTTACTGCGTTTGGTGCGTTTTCTTGGGGAATGTATCAGGTCGGCAAAGGCAACAAGATCCGAAGGGCACTAAAGGAAGAGAAATATGCAGCCCGACGAGCAATATTGCCCGTGCTTCAAGCCGAGGAAGATGAAAGATTCGTCAAAGAGTGGAAGAGTTACCTTGAATATGAGGCTGAAGTTATGAAGGATGTGCCTGGTTGGAAAGTTGGTGAAAATGTCTACAACTCTGGAAAATGGATGCCTCCAGCGACCGGTGAGCTACGACCCGAAGTCTGGTGATTTTGTTTCGAACACGGACTTCTTTGAGGTTGGCATGTAGTTTGTTTGTGTATGCGCTGCGACTTATATCCTCATATGGGTTTGTTTCCTGATTTGCTGGTTCTTCATGGCCCTTCTCATGAAAATAAAAGAAGCATGTCAAAATTTCTTCAAATGTTTTGCAAAAACTGTCTTCTTTATTCAGTAAACATCTCCTTTTACCCATGTATCTCACTGAAAGTTGGGACTTGGAATTAGACATCAATTTATCTTCATTCTTCTTATTTATTTCTTGTATGCCAAGCTGAACAGCATGCTTACCCTAGTCGGTTGCGACTTTGGTTCGGTCGATACTCGTAGTAAGTTGAGGCTTTTGAGCTACAATGTGCTTAGAAGGAACTTGAAATTGGCATGTGTAAGTTGATAGAACCCCAGAGGACTTGTAGTGTGTGAGACTTGCGTGATAACCAAATACACCACTCGGATCATATATTTATCATAAATATTATATTTCAAATTATATTTATGTGAAGGTAA

Coding sequence (CDS)

ATGACGGAGGCCGCGATTCGTAAGAAGCCTGGCATGGCCAGCGTCAAAGACATGCCGATCCTCCAGGACGGGCCACCGCCGGGTGGATTCGCTCCGGTTCGTTATGCTCGCCGGATTCCCACCAAAGGCCCTAGCGCTATGGCGATTTTCCTTACTGCGTTTGGTGCGTTTTCTTGGGGAATGTATCAGGTCGGCAAAGGCAACAAGATCCGAAGGGCACTAAAGGAAGAGAAATATGCAGCCCGACGAGCAATATTGCCCGTGCTTCAAGCCGAGGAAGATGAAAGATTCGTCAAAGAGTGGAAGAGTTACCTTGAATATGAGGCTGAAGTTATGAAGGATGTGCCTGGTTGGAAAGTTGGTGAAAATGTCTACAACTCTGGAAAATGGATGCCTCCAGCGACCGGTGAGCTACGACCCGAAGTCTGGTGA

Protein sequence

MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWGMYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKVGENVYNSGKWMPPATGELRPEVW
Homology
[Close]
BLAST of Cp4.1LG12g01190 vs. Swiss-Prot
Match: NDADB_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Arabidopsis thaliana GN=At2g33220 PE=2 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 3.9e-72
Identity = 128/143 (89.51%), Postives = 135/143 (94.41%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMAIFLT  GAF+WG
Sbjct: 1   MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARRAILP+LQAEEDERFV EWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GENVYNSGKWMPPATGELRPEVW 144
           GENVYNSG+WMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

[Close]
BLAST of Cp4.1LG12g01190 vs. Swiss-Prot
Match: NDADA_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A OS=Arabidopsis thaliana GN=MEE4 PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 3.6e-70
Identity = 124/143 (86.71%), Postives = 132/143 (92.31%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IR KPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMA+FL   GAF+WG
Sbjct: 1   MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARR ILP+LQAEEDERFV EWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GENVYNSGKWMPPATGELRPEVW 144
           GENVYNSG+WMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

[Close]
BLAST of Cp4.1LG12g01190 vs. Swiss-Prot
Match: NDUAD_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = 1 

Query: 20  ILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWGMYQVGKGNKIRRALKEEKY 79
           + QD PP GG+ P+ Y R +P +G S  ++F    GA  +G + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMKWNRERRRLQIEDF 65

Query: 80  AARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKVGENVYNSGKWMPPATGEL 139
            AR A++P+LQAE+D R ++  +  LE EA VMKDVPGWKVGE+V+++ +W+ P  GEL
Sbjct: 66  EARIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKVGESVFHTTRWVTPMMGEL 124

[Close]
BLAST of Cp4.1LG12g01190 vs. Swiss-Prot
Match: NDUAD_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 112.8 bits (281), Expect = 3.0e-24
Identity = 53/119 (44.54%), Postives = 78/119 (65.55%), Query Frame = 1 

Query: 20  ILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWGMYQVGKGNKIRRALKEEKY 79
           + QD PPPGG+ P+ Y R +P +G S  ++     G   +G + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65

Query: 80  AARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKVGENVYNSGKWMPPATGEL 139
            AR A+LP+LQAE D R ++  +  LE EA +MKDVP WKVGE+V+++ +W+PP  GEL
Sbjct: 66  EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124

[Close]
BLAST of Cp4.1LG12g01190 vs. Swiss-Prot
Match: NDUAD_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 112.8 bits (281), Expect = 3.0e-24
Identity = 53/119 (44.54%), Postives = 78/119 (65.55%), Query Frame = 1 

Query: 20  ILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWGMYQVGKGNKIRRALKEEKY 79
           + QD PPPGG+ P+ Y R +P +G S  ++     G   +G + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65

Query: 80  AARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKVGENVYNSGKWMPPATGEL 139
            AR A+LP+LQAE D R ++  +  LE EA +MKDVP WKVGE+V+++ +W+PP  GEL
Sbjct: 66  EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124

[Close]
BLAST of Cp4.1LG12g01190 vs. TrEMBL
Match: A0A0A0LLE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G169710 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 6.2e-77
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GENVYNSGKWMPPATGELRPEVW 144
           GE+VYNSGKWMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of Cp4.1LG12g01190 vs. TrEMBL
Match: A0A067KB62_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12921 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-73
Identity = 136/143 (95.10%), Postives = 139/143 (97.20%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRKKPGMASV+DMPILQDGPPPGGF PVRYARRIPTKGPSAMAIFLTAFG FS+G
Sbjct: 1   MTEAVIRKKPGMASVRDMPILQDGPPPGGFPPVRYARRIPTKGPSAMAIFLTAFGVFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GENVYNSGKWMPPATGELRPEVW 144
           GENVYNSGKWMPPATGELRPEVW
Sbjct: 121 GENVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of Cp4.1LG12g01190 vs. TrEMBL
Match: V4S4M7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006172mg PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 2.4e-73
Identity = 134/143 (93.71%), Postives = 140/143 (97.90%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRIPTKGPSAMA+FL AFGAFS+G
Sbjct: 1   MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILP+LQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GENVYNSGKWMPPATGELRPEVW 144
           GENVYNSG+WMPPA+GELRPEVW
Sbjct: 121 GENVYNSGRWMPPASGELRPEVW 143

[Close]
BLAST of Cp4.1LG12g01190 vs. TrEMBL
Match: A0A067D9M3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031786mg PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 2.4e-73
Identity = 134/143 (93.71%), Postives = 140/143 (97.90%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRIPTKGPSAMA+FL AFGAFS+G
Sbjct: 1   MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILP+LQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GENVYNSGKWMPPATGELRPEVW 144
           GENVYNSG+WMPPA+GELRPEVW
Sbjct: 121 GENVYNSGRWMPPASGELRPEVW 143

[Close]
BLAST of Cp4.1LG12g01190 vs. TrEMBL
Match: A0A0D2RNC1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G163400 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 7.1e-73
Identity = 134/143 (93.71%), Postives = 139/143 (97.20%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRIP KGPSAMAIFL AFGAFS+G
Sbjct: 1   MTEAVIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEK+AARRAILPVLQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKFAARRAILPVLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GENVYNSGKWMPPATGELRPEVW 144
           GENVYNSG+WMPPATGELRPEVW
Sbjct: 121 GENVYNSGRWMPPATGELRPEVW 143

[Close]
BLAST of Cp4.1LG12g01190 vs. TAIR10
Match: AT2G33220.1 (AT2G33220.1 GRIM-19 protein)

HSP 1 Score: 271.9 bits (694), Expect = 2.2e-73
Identity = 128/143 (89.51%), Postives = 135/143 (94.41%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMAIFLT  GAF+WG
Sbjct: 1   MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARRAILP+LQAEEDERFV EWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GENVYNSGKWMPPATGELRPEVW 144
           GENVYNSG+WMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

[Close]
BLAST of Cp4.1LG12g01190 vs. TAIR10
Match: AT1G04630.1 (AT1G04630.1 GRIM-19 protein)

HSP 1 Score: 265.4 bits (677), Expect = 2.0e-71
Identity = 124/143 (86.71%), Postives = 132/143 (92.31%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IR KPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMA+FL   GAF+WG
Sbjct: 1   MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARR ILP+LQAEEDERFV EWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GENVYNSGKWMPPATGELRPEVW 144
           GENVYNSG+WMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

[Close]
BLAST of Cp4.1LG12g01190 vs. NCBI nr
Match: gi|449458876|ref|XP_004147172.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 294.7 bits (753), Expect = 8.9e-77
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GENVYNSGKWMPPATGELRPEVW 144
           GE+VYNSGKWMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of Cp4.1LG12g01190 vs. NCBI nr
Match: gi|659121522|ref|XP_008460702.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 292.4 bits (747), Expect = 4.4e-76
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEAAIRKKPGMASVKDMPILQDGPPPGGF PVRYARRIPTKGPSAMAIFLTAFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFHPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GENVYNSGKWMPPATGELRPEVW 144
           GE+VYNSGKWMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of Cp4.1LG12g01190 vs. NCBI nr
Match: gi|802633777|ref|XP_012077666.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 283.9 bits (725), Expect = 1.6e-73
Identity = 136/143 (95.10%), Postives = 139/143 (97.20%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRKKPGMASV+DMPILQDGPPPGGF PVRYARRIPTKGPSAMAIFLTAFG FS+G
Sbjct: 1   MTEAVIRKKPGMASVRDMPILQDGPPPGGFPPVRYARRIPTKGPSAMAIFLTAFGVFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GENVYNSGKWMPPATGELRPEVW 144
           GENVYNSGKWMPPATGELRPEVW
Sbjct: 121 GENVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of Cp4.1LG12g01190 vs. NCBI nr
Match: gi|567854781|ref|XP_006420510.1| (hypothetical protein CICLE_v10006172mg [Citrus clementina])

HSP 1 Score: 282.7 bits (722), Expect = 3.5e-73
Identity = 134/143 (93.71%), Postives = 140/143 (97.90%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRIPTKGPSAMA+FL AFGAFS+G
Sbjct: 1   MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILP+LQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GENVYNSGKWMPPATGELRPEVW 144
           GENVYNSG+WMPPA+GELRPEVW
Sbjct: 121 GENVYNSGRWMPPASGELRPEVW 143

[Close]
BLAST of Cp4.1LG12g01190 vs. NCBI nr
Match: gi|823247212|ref|XP_012456279.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 281.2 bits (718), Expect = 1.0e-72
Identity = 134/143 (93.71%), Postives = 139/143 (97.20%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRIP KGPSAMAIFL AFGAFS+G
Sbjct: 1   MTEAVIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEK+AARRAILPVLQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKFAARRAILPVLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GENVYNSGKWMPPATGELRPEVW 144
           GENVYNSG+WMPPATGELRPEVW
Sbjct: 121 GENVYNSGRWMPPATGELRPEVW 143

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g01190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDADB_ARATH3.9e-7289.51NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Arabidopsis t... [more]
NDADA_ARATH3.6e-7086.71NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A OS=Arabidopsis t... [more]
NDUAD_BOVIN1.4e-2445.38NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus GN=N... [more]
NDUAD_GORGO3.0e-2444.54NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla... [more]
NDUAD_HUMAN3.0e-2444.54NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens GN... [more]
BLAST of Cp4.1LG12g01190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLE8_CUCSA6.2e-7799.30Uncharacterized protein OS=Cucumis sativus GN=Csa_2G169710 PE=4 SV=1[more]
A0A067KB62_JATCU1.1e-7395.10Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12921 PE=4 SV=1[more]
V4S4M7_9ROSI2.4e-7393.71Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006172mg PE=4 SV=1[more]
A0A067D9M3_CITSI2.4e-7393.71Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031786mg PE=4 SV=1[more]
A0A0D2RNC1_GOSRA7.1e-7393.71Uncharacterized protein OS=Gossypium raimondii GN=B456_011G163400 PE=4 SV=1[more]
BLAST of Cp4.1LG12g01190 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33220.12.2e-7389.51 GRIM-19 protein[more]
AT1G04630.12.0e-7186.71 GRIM-19 protein[more]
BLAST of Cp4.1LG12g01190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458876|ref|XP_004147172.1|8.9e-7799.30PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|659121522|ref|XP_008460702.1|4.4e-7698.60PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|802633777|ref|XP_012077666.1|1.6e-7395.10PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|567854781|ref|XP_006420510.1|3.5e-7393.71hypothetical protein CICLE_v10006172mg [Citrus clementina][more]
gi|823247212|ref|XP_012456279.1|1.0e-7293.71PREDICTED: NADH dehydrogenase [ubiquinone][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009346GRIM-19
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009853 photorespiration
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g01190.1Cp4.1LG12g01190.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009346GRIM-19PANTHERPTHR12966NADH DEHYDROGENASE UBIQUINONE 1 ALPHA SUBCOMPLEX SUBUNIT 13coord: 14..140
score: 2.4
IPR009346GRIM-19PFAMPF06212GRIM-19coord: 20..138
score: 1.0
NoneNo IPR availablePANTHERPTHR12966:SF0NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 13coord: 14..140
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g01190Cucsa.383170Cucumber (Gy14) v1cgycpeB1007
Cp4.1LG12g01190CmaCh17G001260Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g01190CmaCh08G010490Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g01190CmoCh08G010200Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g01190Cla007631Watermelon (97103) v1cpewmB161
Cp4.1LG12g01190Csa2G169710Cucumber (Chinese Long) v2cpecuB127
Cp4.1LG12g01190MELO3C023063Melon (DHL92) v3.5.1cpemeB137
Cp4.1LG12g01190ClCG06G007390Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g01190CSPI02G09850Wild cucumber (PI 183967)cpecpiB126
Cp4.1LG12g01190Lsi09G011790Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g01190MELO3C023063.2Melon (DHL92) v3.6.1cpemedB166
Cp4.1LG12g01190CsaV3_2G012290Cucumber (Chinese Long) v3cpecucB0145
Cp4.1LG12g01190Bhi12G001352Wax gourdcpewgoB0185
Cp4.1LG12g01190CsGy2G009980Cucumber (Gy14) v2cgybcpeB175
Cp4.1LG12g01190Carg11000Silver-seed gourdcarcpeB1501
Cp4.1LG12g01190Carg10120Silver-seed gourdcarcpeB0322
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g01190Cp4.1LG17g02050Cucurbita pepo (Zucchini)cpecpeB169
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g01190Cucurbita pepo (Zucchini)cpecpeB155
Cp4.1LG12g01190Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g01190Cucurbita pepo (Zucchini)cpecpeB189
Cp4.1LG12g01190Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g01190Cucumber (Gy14) v1cgycpeB0670
Cp4.1LG12g01190Cucurbita maxima (Rimu)cmacpeB259
Cp4.1LG12g01190Cucurbita maxima (Rimu)cmacpeB519
Cp4.1LG12g01190Cucurbita maxima (Rimu)cmacpeB600
Cp4.1LG12g01190Cucurbita maxima (Rimu)cmacpeB810
Cp4.1LG12g01190Cucurbita moschata (Rifu)cmocpeB223
Cp4.1LG12g01190Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g01190Cucurbita moschata (Rifu)cmocpeB549
Cp4.1LG12g01190Cucurbita moschata (Rifu)cmocpeB765
Cp4.1LG12g01190Wild cucumber (PI 183967)cpecpiB135
Cp4.1LG12g01190Cucumber (Chinese Long) v2cpecuB134
Cp4.1LG12g01190Bottle gourd (USVL1VR-Ls)cpelsiB120
Cp4.1LG12g01190Watermelon (Charleston Gray)cpewcgB138
Cp4.1LG12g01190Watermelon (97103) v1cpewmB151
Cp4.1LG12g01190Melon (DHL92) v3.5.1cpemeB141
Cp4.1LG12g01190Cucumber (Gy14) v2cgybcpeB302
Cp4.1LG12g01190Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g01190Silver-seed gourdcarcpeB0331
Cp4.1LG12g01190Silver-seed gourdcarcpeB1087
Cp4.1LG12g01190Silver-seed gourdcarcpeB1328
Cp4.1LG12g01190Cucumber (Chinese Long) v3cpecucB0153
Cp4.1LG12g01190Wax gourdcpewgoB0172
Cp4.1LG12g01190Wax gourdcpewgoB0176