CmoCh08G010200 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G010200
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B) (1.6.5.3)
LocationCmo_Chr08 : 6630427 .. 6632862 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCGTGCTCTCATTAGGCAGAAAAATGGGCTTTCATACGCTCGGGTTCCACCGTTTTCCTCTGTACTCTACTTGAGCCTCTTCTTCGTCTTCGCTATCTCCCAAGTCGTAATTCCTGTTTCGCCATTACAGCCAGCTCTTGATTCGTCCAGTTAAGCATCGAAGCAGCTATCTGAGATGACGGAGGCCGCGATTCGGAACAAGCCTGGAATGGCCAGCGTCAAGGACATGCCGATCCTCCAAGACGGGCCACCGCCGGGTGGATTCGCACCCGTTCGTTACGCTCGCCGGATTCCCACCAAAGGCCCTAGCGCCATGGCGATTTTCCTTACTGCTTTTGGTGCATTCTCTTGGGGGATGTATCAGGTCGGCAAAGGCAACAAGATCCGAAGGTATGTGTTTTCTTCCCTTTTAATCCATGGTCTTTACCTGTTTCATCCCATTTCGCTAGTAATGGAATAATTGCTTTCTGAATCCGAGTTTCGTATTTTCTTCAAATTAAATGTTTCGAGTTTGCTTAGGATGTACTGGATTTCTGGACCTAGGACTTCCGTTAGGGATTTGTTGGTTCTTGTTGAAATTCGAGATTCATTCTTTGTGTTACGCTGTCTTGAATTTTACTGATTTTCTGCGTAGATATCTTAAAGGGAATTACTTCGGACGACTTAAGTTGATTCCTGGGTTTGATTCAGTTTCAAGCCAATTGAAGGAAGAATCAATACTTGCAAAATAACATTGTTCATCCATGAGAACTATTAAGGACAATGAACTTCTCCATAATCTCTGTCTAATAAACCCTCATATTTTTGCTTTTGGTTTCACCTCAATGAACTTCTCCATAAATCGACTTAAGGAATCGCTCAAATTCCTTCTGAGTTATTGTCCTGGCTTTGATGCTCAACTCCAGGCATCATACTATTGGAGATTTAGTTATCCTCCTCTTGAACAAATGACCATTGAGCCTCCTTTCAAGTAGTCATCTATCCATCTACTTTTACTCATGTCAACTCATATTCTCCAGAGCACACCACGCCTAGTAGAGCTCAACCACAAATTGTGGCTCATCACTACCCACCTGTTCAATTTTGGAGGTTTCTATCAACACGTTTAAGTCTGAGGCATGTGTTTGTTTGTTAAGGATGATAAACCTTTCTATAATACTGATGCTGATGCGTTTGGTTTTACTTAAAAAGCTTCGTACCAATGGAGTACTTATATACAATCTCCTCCTGTCTAGGAGAGGTGGACTTTGGTTGCACTCAACAAAATTGTCAAAATTAGTTACACTAAAGGTTTTAATCTTGACATCCGTTCACGTTTAGGGTTTAATTTGATAAAACTGAAAGTTAAGGATGGGGAGGAGAACGAATCATTCTTTATTAGGGTGTGGAAATTTCTCTCTATCATACGCGTTTTAAAAACCTTGAAGGAAACCCCGGGAGGGAAAGTCCAAAAAAGACAATATTTGCTAACAGTGGGTTTGGGCCGTTACAAGAAAAGTGTGCCCGTAGTTTCTTAGTACTTTGAAGGGTTGTTTACGGGATTGATATTTAGTATAAAAAAAGTGCCCGTAGATGATGTCATGCTGTTTCGTTCGACCCTTTGAATCTTCTTCGTCATGGTTGGTTTATTAAGTTTACATTACTCTTTTGATGCAACTACTTGTGAAGTTTATCAATGAGCCTATGCAGCATATAGCATATACAGGGCATTGGCCTGAATTCATTATATATTTTGTACTAATCTATTCCAGAGCACTGAAAGAAGAAAAATATTCAGCCCGGCGTGCAATATTGCCTGTACTTCAAGCTGAGGAAGATGAAAGGTAGGATGTGTGATGTATATGCCATTCCAAAGTGATCTATTAATCTGCGATGGCTTTGTTTTCCCGGTTATAATCATAATCTAACCGTGTTGTCGTGATCGCTTTCCAGATTCGTGAAAGAGTGGAAGAGTTACCTCGAATATGAGGCTGAAGTTATGAAGGACGTGCCTGGTTGGAAAGTGGGTGAAAGCGTTTACAACTCAGGAAAATGGATGCCTCCAGCAACTGGTGAGTTACGGCCCGAAGTCTGGTGATCATTTTGTTTTGAACAGACTTGACTCATTTTGTTTGAACTTGTCTGCTCTGCCAATGATCCTCGTATGGGTTTTGCTTGATTTGTTGGATCATAGCCTTCCTTATGATAATAAAAGAAGGGTAGCCCCATGAGCGTTCTAATTAACACGTGAGCGTTCCTCGCACTTGGTGTGAGTTGAATTGTTGATATGATAAATGACTATCTATTATTTGTATGGAGCATAAAAGGGTTTGAAGACATGTCATTCCTCTCGTGTTCGCCCTTTTATGTTGAGTTCAGTTTACTTAATCTAGCCGGTAATGATCTTAGTACTTGCAATGAGTTGAGGTGATTGAACTAGTGTAGGCCGTAACGCG

mRNA sequence

GGCGTGCTCTCATTAGGCAGAAAAATGGGCTTTCATACGCTCGGGTTCCACCGTTTTCCTCTGTACTCTACTTGAGCCTCTTCTTCGTCTTCGCTATCTCCCAAGTCGTAATTCCTGTTTCGCCATTACAGCCAGCTCTTGATTCGTCCAGTTAAGCATCGAAGCAGCTATCTGAGATGACGGAGGCCGCGATTCGGAACAAGCCTGGAATGGCCAGCGTCAAGGACATGCCGATCCTCCAAGACGGGCCACCGCCGGGTGGATTCGCACCCGTTCGTTACGCTCGCCGGATTCCCACCAAAGGCCCTAGCGCCATGGCGATTTTCCTTACTGCTTTTGGTGCATTCTCTTGGGGGATGTATCAGGTCGGCAAAGGCAACAAGATCCGAAGAGCACTGAAAGAAGAAAAATATTCAGCCCGGCGTGCAATATTGCCTGTACTTCAAGCTGAGGAAGATGAAAGATTCGTGAAAGAGTGGAAGAGTTACCTCGAATATGAGGCTGAAGTTATGAAGGACGTGCCTGGTTGGAAAGTGGGTGAAAGCGTTTACAACTCAGGAAAATGGATGCCTCCAGCAACTGGTGAGTTACGGCCCGAAGTCTGGTGATCATTTTGTTTTGAACAGACTTGACTCATTTTGTTTGAACTTGTCTGCTCTGCCAATGATCCTCGTATGGGTTTTGCTTGATTTGTTGGATCATAGCCTTCCTTATGATAATAAAAGAAGGGTAGCCCCATGAGCGTTCTAATTAACACGTGAGCGTTCCTCGCACTTGGTGTGAGTTGAATTGTTGATATGATAAATGACTATCTATTATTTGTATGGAGCATAAAAGGGTTTGAAGACATGTCATTCCTCTCGTGTTCGCCCTTTTATGTTGAGTTCAGTTTACTTAATCTAGCCGGTAATGATCTTAGTACTTGCAATGAGTTGAGGTGATTGAACTAGTGTAGGCCGTAACGCG

Coding sequence (CDS)

ATGACGGAGGCCGCGATTCGGAACAAGCCTGGAATGGCCAGCGTCAAGGACATGCCGATCCTCCAAGACGGGCCACCGCCGGGTGGATTCGCACCCGTTCGTTACGCTCGCCGGATTCCCACCAAAGGCCCTAGCGCCATGGCGATTTTCCTTACTGCTTTTGGTGCATTCTCTTGGGGGATGTATCAGGTCGGCAAAGGCAACAAGATCCGAAGAGCACTGAAAGAAGAAAAATATTCAGCCCGGCGTGCAATATTGCCTGTACTTCAAGCTGAGGAAGATGAAAGATTCGTGAAAGAGTGGAAGAGTTACCTCGAATATGAGGCTGAAGTTATGAAGGACGTGCCTGGTTGGAAAGTGGGTGAAAGCGTTTACAACTCAGGAAAATGGATGCCTCCAGCAACTGGTGAGTTACGGCCCGAAGTCTGGTGA
Homology
[Close]
BLAST of CmoCh08G010200 vs. Swiss-Prot
Match: NDADB_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Arabidopsis thaliana GN=At2g33220 PE=2 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 9.6e-71
Identity = 125/143 (87.41%), Postives = 134/143 (93.71%), Query Frame = 1 

Query: 1   MTEAAIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IR KPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMAIFLT  GAF+WG
Sbjct: 1   MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKY+ARRAILP+LQAEEDERFV EWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSG+WMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

[Close]
BLAST of CmoCh08G010200 vs. Swiss-Prot
Match: NDADA_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A OS=Arabidopsis thaliana GN=MEE4 PE=2 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 4.7e-70
Identity = 123/143 (86.01%), Postives = 133/143 (93.01%), Query Frame = 1 

Query: 1   MTEAAIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRNKPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMA+FL   GAF+WG
Sbjct: 1   MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKY+ARR ILP+LQAEEDERFV EWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSG+WMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

[Close]
BLAST of CmoCh08G010200 vs. Swiss-Prot
Match: NDUAD_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 115.5 bits (288), Expect = 4.6e-25
Identity = 55/119 (46.22%), Postives = 80/119 (67.23%), Query Frame = 1 

Query: 20  ILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWGMYQVGKGNKIRRALKEEKY 79
           + QD PP GG+ P+ Y R +P +G S  ++F    GA  +G + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMKWNRERRRLQIEDF 65

Query: 80  SARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKVGESVYNSGKWMPPATGEL 139
            AR A++P+LQAE+D R ++  +  LE EA VMKDVPGWKVGESV+++ +W+ P  GEL
Sbjct: 66  EARIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKVGESVFHTTRWVTPMMGEL 124

[Close]
BLAST of CmoCh08G010200 vs. Swiss-Prot
Match: NDUAD_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-24
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 1 

Query: 20  ILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWGMYQVGKGNKIRRALKEEKY 79
           + QD PPPGG+ P+ Y R +P +G S  ++     G   +G + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65

Query: 80  SARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKVGESVYNSGKWMPPATGEL 139
            AR A+LP+LQAE D R ++  +  LE EA +MKDVP WKVGESV+++ +W+PP  GEL
Sbjct: 66  EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124

[Close]
BLAST of CmoCh08G010200 vs. Swiss-Prot
Match: NDUAD_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-24
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 1 

Query: 20  ILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWGMYQVGKGNKIRRALKEEKY 79
           + QD PPPGG+ P+ Y R +P +G S  ++     G   +G + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65

Query: 80  SARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKVGESVYNSGKWMPPATGEL 139
            AR A+LP+LQAE D R ++  +  LE EA +MKDVP WKVGESV+++ +W+PP  GEL
Sbjct: 66  EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124

[Close]
BLAST of CmoCh08G010200 vs. TrEMBL
Match: A0A0A0LLE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G169710 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.8e-76
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 1 

Query: 1   MTEAAIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEAAIR KPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKY+ARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSGKWMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of CmoCh08G010200 vs. TrEMBL
Match: A0A061EL87_THECC (GRIM-19 protein isoform 1 OS=Theobroma cacao GN=TCM_020440 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.2e-73
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 1 

Query: 1   MTEAAIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIP KGPSAMAIFL AFGAFS+G
Sbjct: 1   MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKY+ARRAILPVLQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSG+WMPPATGELRPEVW
Sbjct: 121 GESVYNSGRWMPPATGELRPEVW 143

[Close]
BLAST of CmoCh08G010200 vs. TrEMBL
Match: A0A067KB62_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12921 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 2.7e-72
Identity = 133/143 (93.01%), Postives = 138/143 (96.50%), Query Frame = 1 

Query: 1   MTEAAIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IR KPGMASV+DMPILQDGPPPGGF PVRYARRIPTKGPSAMAIFLTAFG FS+G
Sbjct: 1   MTEAVIRKKPGMASVRDMPILQDGPPPGGFPPVRYARRIPTKGPSAMAIFLTAFGVFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKY+ARRAILPVLQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSGKWMPPATGELRPEVW
Sbjct: 121 GENVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of CmoCh08G010200 vs. TrEMBL
Match: B9GMI9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s14030g PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 2.7e-72
Identity = 132/143 (92.31%), Postives = 140/143 (97.90%), Query Frame = 1 

Query: 1   MTEAAIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRNKPGMASVKDMPILQDGPPPGGFAPVR+ARRIP+KGPSAMAIFL AFGAFS+G
Sbjct: 1   MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRFARRIPSKGPSAMAIFLAAFGAFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MY+VGKGNKIRRALKEEKY+ARRAILP+LQAEEDERFVKEWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYEVGKGNKIRRALKEEKYAARRAILPLLQAEEDERFVKEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSG+WMPPATGELRPEVW
Sbjct: 121 GESVYNSGRWMPPATGELRPEVW 143

[Close]
BLAST of CmoCh08G010200 vs. TrEMBL
Match: V4S4M7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006172mg PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 6.0e-72
Identity = 131/143 (91.61%), Postives = 139/143 (97.20%), Query Frame = 1 

Query: 1   MTEAAIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IR KPGMASVKDMP+LQDGPPPGGFAPVRYARRIPTKGPSAMA+FL AFGAFS+G
Sbjct: 1   MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKY+ARRAILP+LQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSG+WMPPA+GELRPEVW
Sbjct: 121 GENVYNSGRWMPPASGELRPEVW 143

[Close]
BLAST of CmoCh08G010200 vs. TAIR10
Match: AT2G33220.1 (AT2G33220.1 GRIM-19 protein)

HSP 1 Score: 267.3 bits (682), Expect = 5.4e-72
Identity = 125/143 (87.41%), Postives = 134/143 (93.71%), Query Frame = 1 

Query: 1   MTEAAIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IR KPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMAIFLT  GAF+WG
Sbjct: 1   MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKY+ARRAILP+LQAEEDERFV EWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSG+WMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

[Close]
BLAST of CmoCh08G010200 vs. TAIR10
Match: AT1G04630.1 (AT1G04630.1 GRIM-19 protein)

HSP 1 Score: 265.0 bits (676), Expect = 2.7e-71
Identity = 123/143 (86.01%), Postives = 133/143 (93.01%), Query Frame = 1 

Query: 1   MTEAAIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRNKPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMA+FL   GAF+WG
Sbjct: 1   MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKY+ARR ILP+LQAEEDERFV EWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSG+WMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

[Close]
BLAST of CmoCh08G010200 vs. NCBI nr
Match: gi|449458876|ref|XP_004147172.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 293.1 bits (749), Expect = 2.6e-76
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 1 

Query: 1   MTEAAIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEAAIR KPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKY+ARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSGKWMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of CmoCh08G010200 vs. NCBI nr
Match: gi|659121522|ref|XP_008460702.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 290.8 bits (743), Expect = 1.3e-75
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 1 

Query: 1   MTEAAIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEAAIR KPGMASVKDMPILQDGPPPGGF PVRYARRIPTKGPSAMAIFLTAFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFHPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKY+ARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSGKWMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of CmoCh08G010200 vs. NCBI nr
Match: gi|590657272|ref|XP_007034517.1| (GRIM-19 protein isoform 1 [Theobroma cacao])

HSP 1 Score: 282.3 bits (721), Expect = 4.6e-73
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 1 

Query: 1   MTEAAIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIP KGPSAMAIFL AFGAFS+G
Sbjct: 1   MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKY+ARRAILPVLQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSG+WMPPATGELRPEVW
Sbjct: 121 GESVYNSGRWMPPATGELRPEVW 143

[Close]
BLAST of CmoCh08G010200 vs. NCBI nr
Match: gi|743916348|ref|XP_011002146.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 279.6 bits (714), Expect = 3.0e-72
Identity = 132/143 (92.31%), Postives = 140/143 (97.90%), Query Frame = 1 

Query: 1   MTEAAIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IRNKPGMASVKDMP+LQDGPPPGGFAPVR+ARRIP+KGPSAMAIFL AFGAFS+G
Sbjct: 1   MTEAVIRNKPGMASVKDMPVLQDGPPPGGFAPVRFARRIPSKGPSAMAIFLAAFGAFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKY+ARRAILP+LQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPLLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSG+WMPPA+GELRPEVW
Sbjct: 121 GESVYNSGRWMPPASGELRPEVW 143

[Close]
BLAST of CmoCh08G010200 vs. NCBI nr
Match: gi|802633777|ref|XP_012077666.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 279.3 bits (713), Expect = 3.9e-72
Identity = 133/143 (93.01%), Postives = 138/143 (96.50%), Query Frame = 1 

Query: 1   MTEAAIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60
           MTEA IR KPGMASV+DMPILQDGPPPGGF PVRYARRIPTKGPSAMAIFLTAFG FS+G
Sbjct: 1   MTEAVIRKKPGMASVRDMPILQDGPPPGGFPPVRYARRIPTKGPSAMAIFLTAFGVFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYSARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKY+ARRAILPVLQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSGKWMPPATGELRPEVW
Sbjct: 121 GENVYNSGKWMPPATGELRPEVW 143

The following BLAST results are available for this feature:
BLAST of CmoCh08G010200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDADB_ARATH9.6e-7187.41NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Arabidopsis t... [more]
NDADA_ARATH4.7e-7086.01NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A OS=Arabidopsis t... [more]
NDUAD_BOVIN4.6e-2546.22NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus GN=N... [more]
NDUAD_GORGO1.0e-2445.38NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla... [more]
NDUAD_HUMAN1.0e-2445.38NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens GN... [more]
BLAST of CmoCh08G010200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLE8_CUCSA1.8e-7698.60Uncharacterized protein OS=Cucumis sativus GN=Csa_2G169710 PE=4 SV=1[more]
A0A061EL87_THECC3.2e-7394.41GRIM-19 protein isoform 1 OS=Theobroma cacao GN=TCM_020440 PE=4 SV=1[more]
A0A067KB62_JATCU2.7e-7293.01Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12921 PE=4 SV=1[more]
B9GMI9_POPTR2.7e-7292.31Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s14030g PE=4 SV=1[more]
V4S4M7_9ROSI6.0e-7291.61Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006172mg PE=4 SV=1[more]
BLAST of CmoCh08G010200 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33220.15.4e-7287.41 GRIM-19 protein[more]
AT1G04630.12.7e-7186.01 GRIM-19 protein[more]
BLAST of CmoCh08G010200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458876|ref|XP_004147172.1|2.6e-7698.60PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|659121522|ref|XP_008460702.1|1.3e-7597.90PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|590657272|ref|XP_007034517.1|4.6e-7394.41GRIM-19 protein isoform 1 [Theobroma cacao][more]
gi|743916348|ref|XP_011002146.1|3.0e-7292.31PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|802633777|ref|XP_012077666.1|3.9e-7293.01PREDICTED: NADH dehydrogenase [ubiquinone][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009346GRIM-19
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0009853 photorespiration
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G010200.1CmoCh08G010200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009346GRIM-19PANTHERPTHR12966NADH DEHYDROGENASE UBIQUINONE 1 ALPHA SUBCOMPLEX SUBUNIT 13coord: 14..140
score: 1.4
IPR009346GRIM-19PFAMPF06212GRIM-19coord: 20..138
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G010200Cucsa.383170Cucumber (Gy14) v1cgycmoB1059
CmoCh08G010200CmaCh17G001260Cucurbita maxima (Rimu)cmacmoB365
CmoCh08G010200CmaCh08G010490Cucurbita maxima (Rimu)cmacmoB912
CmoCh08G010200Cla007631Watermelon (97103) v1cmowmB867
CmoCh08G010200Csa2G169710Cucumber (Chinese Long) v2cmocuB868
CmoCh08G010200MELO3C023063Melon (DHL92) v3.5.1cmomeB828
CmoCh08G010200ClCG06G007390Watermelon (Charleston Gray)cmowcgB799
CmoCh08G010200CSPI02G09850Wild cucumber (PI 183967)cmocpiB879
CmoCh08G010200Lsi09G011790Bottle gourd (USVL1VR-Ls)cmolsiB797
CmoCh08G010200Cp4.1LG12g01190Cucurbita pepo (Zucchini)cmocpeB833
CmoCh08G010200Cp4.1LG17g02050Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G010200MELO3C023063.2Melon (DHL92) v3.6.1cmomedB935
CmoCh08G010200CsaV3_2G012290Cucumber (Chinese Long) v3cmocucB1026
CmoCh08G010200Cla97C06G117150Watermelon (97103) v2cmowmbB896
CmoCh08G010200Bhi12G001352Wax gourdcmowgoB1096
CmoCh08G010200CsGy2G009980Cucumber (Gy14) v2cgybcmoB254
CmoCh08G010200Carg11000Silver-seed gourdcarcmoB1452
CmoCh08G010200Carg10120Silver-seed gourdcarcmoB0326
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G010200Cucumber (Gy14) v2cgybcmoB421
CmoCh08G010200Cucumber (Gy14) v2cgybcmoB431
CmoCh08G010200Melon (DHL92) v3.6.1cmomedB933
CmoCh08G010200Melon (DHL92) v3.6.1cmomedB940
CmoCh08G010200Silver-seed gourdcarcmoB0333
CmoCh08G010200Silver-seed gourdcarcmoB1061
CmoCh08G010200Silver-seed gourdcarcmoB1289
CmoCh08G010200Cucumber (Chinese Long) v3cmocucB1032
CmoCh08G010200Cucumber (Chinese Long) v3cmocucB1040
CmoCh08G010200Watermelon (97103) v2cmowmbB886
CmoCh08G010200Watermelon (97103) v2cmowmbB903
CmoCh08G010200Wax gourdcmowgoB1084
CmoCh08G010200Wax gourdcmowgoB1111
CmoCh08G010200Cucurbita moschata (Rifu)cmocmoB233
CmoCh08G010200Cucurbita moschata (Rifu)cmocmoB310
CmoCh08G010200Cucurbita moschata (Rifu)cmocmoB484
CmoCh08G010200Cucurbita moschata (Rifu)cmocmoB446
CmoCh08G010200Cucumber (Gy14) v1cgycmoB0721
CmoCh08G010200Cucurbita maxima (Rimu)cmacmoB279
CmoCh08G010200Cucurbita maxima (Rimu)cmacmoB837
CmoCh08G010200Wild cucumber (PI 183967)cmocpiB883
CmoCh08G010200Cucumber (Chinese Long) v2cmocuB872
CmoCh08G010200Melon (DHL92) v3.5.1cmomeB832
CmoCh08G010200Melon (DHL92) v3.5.1cmomeB826
CmoCh08G010200Watermelon (Charleston Gray)cmowcgB792
CmoCh08G010200Watermelon (Charleston Gray)cmowcgB808
CmoCh08G010200Watermelon (97103) v1cmowmB853
CmoCh08G010200Watermelon (97103) v1cmowmB856
CmoCh08G010200Cucurbita pepo (Zucchini)cmocpeB862
CmoCh08G010200Cucurbita pepo (Zucchini)cmocpeB865
CmoCh08G010200Cucurbita pepo (Zucchini)cmocpeB866
CmoCh08G010200Bottle gourd (USVL1VR-Ls)cmolsiB823
CmoCh08G010200Bottle gourd (USVL1VR-Ls)cmolsiB824