CmaCh17G001260 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G001260
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B
LocationCma_Chr17 : 648698 .. 651937 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTCGGGTTCCACCCTCTGCATTCTACTTGAGCCTCTTTACTTCGTCTCGTTTGGGTTCTTTCGTTCTCGAAACCTCCCAATTCCCAAATCTCAGTTCTCCATTACAGCCAGCTCTTGATTCGTTCACTTGATCGTCGAAGCAGCTCTCTGAGATGACGGAGGCCGCGATTCGGAAGAAGCCTGGCATGGCCAGCGTCAAAGACATGCCGATCCTCCAGGACGGGCCACCGCCGGGTGGGTTCGCTCCGGTTCGCTATGCTCGACGGATTCCCACCAAAGGCCCTAGCGCCATGGCGATTTTCCTTGCTGCGTTTGGTGCATTTTCTTGGGGGATGTATCAGGTCGGCAAAGGCAACAAGATCCGAAGGTCTAAATTTTCTCCCCCATTATCTTAGTTTAATCCATGGTCATTACCTGTTTTATATCATTCCACTAGTAATGGGATTTACTGCTTTTCTATCTGGATTTCGTCTTTTCTGCGAATTAAGTGGTGAGTTAGCTTGGGATGTATTAGACTTCTTGACCCAGGATTTCAGCTAGGGATTTGATTATTTTTATTGACTTTCGAGATTCATGCTTTGTGCTAGGCTGTTTTGGATTTTACCGATTTTCCGGGTAGATGCCTTGGAGGGAATTTCTATTGAGAGTTTAGGTTTGATACCTGGATTTGATTCAGTTTCAAGTCATTTGGTTTTTTGAAAAGAAATTAGCATTTTCTTAGCTACTTTAATTGAGGGTGGGTTGAGGCCGCATCTCCATTCCTCTTTTGCATCCCGCTTTGAATCTGATGATGAAGTTTAAGTTTCGTGCATACATTAAAACACCTTCAAAACTACACTTAGTTTGAAAATTGCCCAACGAAGGAGTTCTTATTAGAAGATTACATACTTGCATAATAACATTTTTCATTCATAAGAACTGTTTTTAAGAACAATGAACCACTCCATAATTTCAGACTAGCATAGTATTGTCCACTTTTGAACATAAACTTTCATGACTTTGCTTTTGACTTCACTAAAATTATCTCATACCATTGGAGATAATTATCCCATTTATACACGTTATCTTCAAACGGAGGACCACTGAGCCATTCTTCAAGCACACCACGTCTTATATAGCTTAATCACTGATCTTCATGTAACTATGTCATTGAGGCTCATCACTATCCACATGTTTAGATTCGAAGGATTGAATCAACATGTTTAAGTTTGGGGTATGCCTTTCTTACTATTTGTCAAGGATGATCATGCCAATGGAAATAGTTATTCTTACTTATATACCTACAATCTTCTTCTTATCTCAACTTTGGCCTGTTTATCGCCATTAGTCTCAGGGTTTTAAAATGTGTCTGTTAGTGAGAGTTTTCCACACCCTTATAAAGAATGTTTCGTTCCCCTCTCCAACGGATGTGGGATCTCACAATCCACCCCCTTTGGTGGCCCAATATCCTCATTGGCACATTGGTCGGTGCCTGACTATGATATTGTGAGGGCAAACGGCGCGTCCGTTTTTGCCCGTTACGTATCGATGTCAGCCTCATGTTACCTCTGTAGGTAGAAGTTTTTACACTTTTATAAGGAATGTTTCGGTCTCCTCTCCAACTGATGTGGGATTTCACACTACACAAAATGGGGTAACTTAACTCGTTGGTTTTTTTTTTTTTTTTGTTGGAGGGGGGTAAGAAATTGAGCTTTCTTTGAGAAAATGAGAGAATACATAGGCATACAAAAAACGAGCCTAAACAAATTTTAAAAAATGTTTCCAATCCAAAAGAACAAGGCCAAGATCAGGCATAGTGACCGAGACCTAAAAGAAGGCTTTAAATCTAACCACCTCACCCGCTCTCTCAACTCCTCACAATTTCTGTTGTGTTTTTTTCTAACCAAATATCCCACAAAAGAGCAAAGAAGCTAGTTTGCCACAAAACTTTACCTCTTTCCTTAAAAGAGAATTCAAAAGCACCTCCTCAACAACAAGCAACCATCCTATCCCTGAGCACAACCCACACCAAACAAGGATTTCCAACGATCCTAAAGAAACTGAGCAAATTGAAAGTTAAATATTCAAATTGATTCATTTAGTTTAGAATAGGTGATAAAAGTAAAATTTTCCCTAATTATTCGATTGTTGCAAGTAATGGTTATTTGAGGTAGATGTCTTATGTGCTTCTATTTAACATCAGAGAATCTCTTGGTATAATGTTATAAATGCACCCGTTTTGTTTCAAGGTATGTGGAATTTAATCAATTTGTTTAAGATTAATAGCCGTAACTGAGATCATCAGTCTACATTATTTGAAAAGGAAGAGTGATTGTAGTTTCTTCGTACATCGAAGGTTTTTTACGGGATTTATAGATAGTTTAAAGGAATAGTATTTCCTGCTTTCCTCTGTTCCCCTCTTTTCCTTTTGCTTGAACGAGGTGAGAGTGGTGACCCATTTGGTTGGGGGAAATGGTGAAGATGATGTCATGCTGTTTATTCAACCTGTCGTTTCTTACTGTTTATGATTGGTTTAACAAGTTTATATTACTCTTTTGTTGCAAACTATGAATTTCACAATGAGCATGTACGACATGTATAGGGCACTGAAGGAAGAGAAATATGCTGCCCGACGAGCAATATTGCCCATGCTTCAAGCCGAGGAAGATGAAAGGTAAATGGATGATTTTTTGTGCAGGCTGCCCTCAAACTTACAGTAACACTGATTGAAACTACTGGATCCTTGATGGTTTTAACGAAGTTTAATATCACTTATCTAAACTTATCTAACCGTGTCTGTTCTAACTTTCTAGATTCGTCAAAGAGTGGAAGAGTTACCTTGAATATGAGGCTGAAGTTATGAAGGATGTGCCTGGTTGGAAAGTTGGTGAAAGTGTCTACAACTCTGGAAAATGGATGCCTCCAGCGACCGGTGAGCTACGACCCGAAGTCTGGTGATTTTGTTTCGAACACAGACTTCTTGAGGTTGGCATGTAGTTTGTTTGTGTATGCGCTGCGACTTATATCCTCATATGGGATTGTTTCCTGATTTGCTGGTTCTTCATGGCCCTTCTCATGAAAATAAAAGAAGCATGTCAAAATTTCTTCAAATGTTTTGCAAAAACTGTCTTCTTTATTCAGTAAACATCTCCTTTTACCCATGTATCTCACTGAAAGTTGGGACTTGGAATTAGACATCAATTTATCTTCATTCTTATTTATTTCTTGTTTGCCAAGCTGAACAGCATGCTTAGCCTAGT

mRNA sequence

GCTCGGGTTCCACCCTCTGCATTCTACTTGAGCCTCTTTACTTCGTCTCGTTTGGGTTCTTTCGTTCTCGAAACCTCCCAATTCCCAAATCTCAGTTCTCCATTACAGCCAGCTCTTGATTCGTTCACTTGATCGTCGAAGCAGCTCTCTGAGATGACGGAGGCCGCGATTCGGAAGAAGCCTGGCATGGCCAGCGTCAAAGACATGCCGATCCTCCAGGACGGGCCACCGCCGGGTGGGTTCGCTCCGGTTCGCTATGCTCGACGGATTCCCACCAAAGGCCCTAGCGCCATGGCGATTTTCCTTGCTGCGTTTGGTGCATTTTCTTGGGGGATGTATCAGGTCGGCAAAGGCAACAAGATCCGAAGGGCACTGAAGGAAGAGAAATATGCTGCCCGACGAGCAATATTGCCCATGCTTCAAGCCGAGGAAGATGAAAGATTCGTCAAAGAGTGGAAGAGTTACCTTGAATATGAGGCTGAAGTTATGAAGGATGTGCCTGGTTGGAAAGTTGGTGAAAGTGTCTACAACTCTGGAAAATGGATGCCTCCAGCGACCGGTGAGCTACGACCCGAAGTCTGGTGATTTTGTTTCGAACACAGACTTCTTGAGGTTGGCATGTAGTTTGTTTGTGTATGCGCTGCGACTTATATCCTCATATGGGATTGTTTCCTGATTTGCTGGTTCTTCATGGCCCTTCTCATGAAAATAAAAGAAGCATGTCAAAATTTCTTCAAATGTTTTGCAAAAACTGTCTTCTTTATTCAGTAAACATCTCCTTTTACCCATGTATCTCACTGAAAGTTGGGACTTGGAATTAGACATCAATTTATCTTCATTCTTATTTATTTCTTGTTTGCCAAGCTGAACAGCATGCTTAGCCTAGT

Coding sequence (CDS)

ATGACGGAGGCCGCGATTCGGAAGAAGCCTGGCATGGCCAGCGTCAAAGACATGCCGATCCTCCAGGACGGGCCACCGCCGGGTGGGTTCGCTCCGGTTCGCTATGCTCGACGGATTCCCACCAAAGGCCCTAGCGCCATGGCGATTTTCCTTGCTGCGTTTGGTGCATTTTCTTGGGGGATGTATCAGGTCGGCAAAGGCAACAAGATCCGAAGGGCACTGAAGGAAGAGAAATATGCTGCCCGACGAGCAATATTGCCCATGCTTCAAGCCGAGGAAGATGAAAGATTCGTCAAAGAGTGGAAGAGTTACCTTGAATATGAGGCTGAAGTTATGAAGGATGTGCCTGGTTGGAAAGTTGGTGAAAGTGTCTACAACTCTGGAAAATGGATGCCTCCAGCGACCGGTGAGCTACGACCCGAAGTCTGGTGA

Protein sequence

MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKVGESVYNSGKWMPPATGELRPEVW
Homology
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BLAST of CmaCh17G001260 vs. Swiss-Prot
Match: NDADB_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Arabidopsis thaliana GN=At2g33220 PE=2 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.6e-70
Identity = 126/143 (88.11%), Postives = 134/143 (93.71%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWG 60
           MTEA IRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMAIFL   GAF+WG
Sbjct: 1   MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARRAILP+LQAEEDERFV EWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSG+WMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

[Close]
BLAST of CmaCh17G001260 vs. Swiss-Prot
Match: NDADA_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A OS=Arabidopsis thaliana GN=MEE4 PE=2 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-69
Identity = 124/143 (86.71%), Postives = 133/143 (93.01%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWG 60
           MTEA IR KPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMA+FLA  GAF+WG
Sbjct: 1   MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARR ILP+LQAEEDERFV EWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSG+WMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

[Close]
BLAST of CmaCh17G001260 vs. Swiss-Prot
Match: NDUAD_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 114.8 bits (286), Expect = 7.9e-25
Identity = 55/119 (46.22%), Postives = 80/119 (67.23%), Query Frame = 1 

Query: 20  ILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWGMYQVGKGNKIRRALKEEKY 79
           + QD PP GG+ P+ Y R +P +G S  ++F    GA  +G + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMKWNRERRRLQIEDF 65

Query: 80  AARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKVGESVYNSGKWMPPATGEL 139
            AR A++P+LQAE+D R ++  +  LE EA VMKDVPGWKVGESV+++ +W+ P  GEL
Sbjct: 66  EARIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKVGESVFHTTRWVTPMMGEL 124

[Close]
BLAST of CmaCh17G001260 vs. Swiss-Prot
Match: NDUAD_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-24
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 1 

Query: 20  ILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWGMYQVGKGNKIRRALKEEKY 79
           + QD PPPGG+ P+ Y R +P +G S  ++     G   +G + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65

Query: 80  AARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKVGESVYNSGKWMPPATGEL 139
            AR A+LP+LQAE D R ++  +  LE EA +MKDVP WKVGESV+++ +W+PP  GEL
Sbjct: 66  EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124

[Close]
BLAST of CmaCh17G001260 vs. Swiss-Prot
Match: NDUAD_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-24
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 1 

Query: 20  ILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWGMYQVGKGNKIRRALKEEKY 79
           + QD PPPGG+ P+ Y R +P +G S  ++     G   +G + + K N+ RR L+ E +
Sbjct: 6   VKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDF 65

Query: 80  AARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKVGESVYNSGKWMPPATGEL 139
            AR A+LP+LQAE D R ++  +  LE EA +MKDVP WKVGESV+++ +W+PP  GEL
Sbjct: 66  EARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124

[Close]
BLAST of CmaCh17G001260 vs. TrEMBL
Match: A0A0A0LLE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G169710 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 4.0e-76
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWG 60
           MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFL AFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILP+LQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSGKWMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of CmaCh17G001260 vs. TrEMBL
Match: A0A067D9M3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031786mg PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-73
Identity = 135/143 (94.41%), Postives = 141/143 (98.60%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWG 60
           MTEA IRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRIPTKGPSAMA+FLAAFGAFS+G
Sbjct: 1   MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSG+WMPPA+GELRPEVW
Sbjct: 121 GENVYNSGRWMPPASGELRPEVW 143

[Close]
BLAST of CmaCh17G001260 vs. TrEMBL
Match: V4S4M7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006172mg PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-73
Identity = 135/143 (94.41%), Postives = 141/143 (98.60%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWG 60
           MTEA IRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRIPTKGPSAMA+FLAAFGAFS+G
Sbjct: 1   MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSG+WMPPA+GELRPEVW
Sbjct: 121 GENVYNSGRWMPPASGELRPEVW 143

[Close]
BLAST of CmaCh17G001260 vs. TrEMBL
Match: A0A061EL87_THECC (GRIM-19 protein isoform 1 OS=Theobroma cacao GN=TCM_020440 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.2e-72
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWG 60
           MTEA IR KPGMASVKDMPILQDGPPPGGFAPVRYARRIP KGPSAMAIFLAAFGAFS+G
Sbjct: 1   MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARRAILP+LQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSG+WMPPATGELRPEVW
Sbjct: 121 GESVYNSGRWMPPATGELRPEVW 143

[Close]
BLAST of CmaCh17G001260 vs. TrEMBL
Match: B9GMI9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s14030g PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 3.5e-72
Identity = 133/143 (93.01%), Postives = 140/143 (97.90%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWG 60
           MTEA IR KPGMASVKDMPILQDGPPPGGFAPVR+ARRIP+KGPSAMAIFLAAFGAFS+G
Sbjct: 1   MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRFARRIPSKGPSAMAIFLAAFGAFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MY+VGKGNKIRRALKEEKYAARRAILP+LQAEEDERFVKEWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYEVGKGNKIRRALKEEKYAARRAILPLLQAEEDERFVKEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSG+WMPPATGELRPEVW
Sbjct: 121 GESVYNSGRWMPPATGELRPEVW 143

[Close]
BLAST of CmaCh17G001260 vs. TAIR10
Match: AT2G33220.1 (AT2G33220.1 GRIM-19 protein)

HSP 1 Score: 266.5 bits (680), Expect = 9.2e-72
Identity = 126/143 (88.11%), Postives = 134/143 (93.71%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWG 60
           MTEA IRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMAIFL   GAF+WG
Sbjct: 1   MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARRAILP+LQAEEDERFV EWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSG+WMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

[Close]
BLAST of CmaCh17G001260 vs. TAIR10
Match: AT1G04630.1 (AT1G04630.1 GRIM-19 protein)

HSP 1 Score: 263.5 bits (672), Expect = 7.8e-71
Identity = 124/143 (86.71%), Postives = 133/143 (93.01%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWG 60
           MTEA IR KPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSAMA+FLA  GAF+WG
Sbjct: 1   MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARR ILP+LQAEEDERFV EWK YLEYEA+VMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSG+WMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143

[Close]
BLAST of CmaCh17G001260 vs. NCBI nr
Match: gi|449458876|ref|XP_004147172.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 292.0 bits (746), Expect = 5.8e-76
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWG 60
           MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFL AFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILP+LQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSGKWMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of CmaCh17G001260 vs. NCBI nr
Match: gi|659121522|ref|XP_008460702.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 289.7 bits (740), Expect = 2.9e-75
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWG 60
           MTEAAIRKKPGMASVKDMPILQDGPPPGGF PVRYARRIPTKGPSAMAIFL AFGAFSWG
Sbjct: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFHPVRYARRIPTKGPSAMAIFLTAFGAFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILP+LQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSGKWMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143

[Close]
BLAST of CmaCh17G001260 vs. NCBI nr
Match: gi|567854781|ref|XP_006420510.1| (hypothetical protein CICLE_v10006172mg [Citrus clementina])

HSP 1 Score: 283.1 bits (723), Expect = 2.7e-73
Identity = 135/143 (94.41%), Postives = 141/143 (98.60%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWG 60
           MTEA IRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRIPTKGPSAMA+FLAAFGAFS+G
Sbjct: 1   MTEAMIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAMALFLAAFGAFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GE+VYNSG+WMPPA+GELRPEVW
Sbjct: 121 GENVYNSGRWMPPASGELRPEVW 143

[Close]
BLAST of CmaCh17G001260 vs. NCBI nr
Match: gi|590657272|ref|XP_007034517.1| (GRIM-19 protein isoform 1 [Theobroma cacao])

HSP 1 Score: 280.4 bits (716), Expect = 1.7e-72
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWG 60
           MTEA IR KPGMASVKDMPILQDGPPPGGFAPVRYARRIP KGPSAMAIFLAAFGAFS+G
Sbjct: 1   MTEAVIRNKPGMASVKDMPILQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVG+GNKIRRALKEEKYAARRAILP+LQAEEDERFVKEWK YLEYEAEVMKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSG+WMPPATGELRPEVW
Sbjct: 121 GESVYNSGRWMPPATGELRPEVW 143

[Close]
BLAST of CmaCh17G001260 vs. NCBI nr
Match: gi|658051970|ref|XP_008361715.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 280.4 bits (716), Expect = 1.7e-72
Identity = 133/143 (93.01%), Postives = 138/143 (96.50%), Query Frame = 1 

Query: 1   MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLAAFGAFSWG 60
           MTEA IRKKPGMASVKDMP+LQDGPPPGGFAPVRYARRIP KGPS++AIFLAAFG FSWG
Sbjct: 1   MTEAVIRKKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPNKGPSSVAIFLAAFGTFSWG 60

Query: 61  MYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKV 120
           MYQVGKGNKIRRALKEEKYAARRAILP+LQAEEDER+VKEWK YLEYEAEVMKDVP WKV
Sbjct: 61  MYQVGKGNKIRRALKEEKYAARRAILPVLQAEEDERYVKEWKKYLEYEAEVMKDVPNWKV 120

Query: 121 GESVYNSGKWMPPATGELRPEVW 144
           GESVYNSGKWMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143

The following BLAST results are available for this feature:
BLAST of CmaCh17G001260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDADB_ARATH1.6e-7088.11NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Arabidopsis t... [more]
NDADA_ARATH1.4e-6986.71NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A OS=Arabidopsis t... [more]
NDUAD_BOVIN7.9e-2546.22NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus GN=N... [more]
NDUAD_GORGO1.8e-2445.38NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla... [more]
NDUAD_HUMAN1.8e-2445.38NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens GN... [more]
BLAST of CmaCh17G001260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLE8_CUCSA4.0e-7698.60Uncharacterized protein OS=Cucumis sativus GN=Csa_2G169710 PE=4 SV=1[more]
A0A067D9M3_CITSI1.9e-7394.41Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031786mg PE=4 SV=1[more]
V4S4M7_9ROSI1.9e-7394.41Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006172mg PE=4 SV=1[more]
A0A061EL87_THECC1.2e-7294.41GRIM-19 protein isoform 1 OS=Theobroma cacao GN=TCM_020440 PE=4 SV=1[more]
B9GMI9_POPTR3.5e-7293.01Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s14030g PE=4 SV=1[more]
BLAST of CmaCh17G001260 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33220.19.2e-7288.11 GRIM-19 protein[more]
AT1G04630.17.8e-7186.71 GRIM-19 protein[more]
BLAST of CmaCh17G001260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458876|ref|XP_004147172.1|5.8e-7698.60PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|659121522|ref|XP_008460702.1|2.9e-7597.90PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|567854781|ref|XP_006420510.1|2.7e-7394.41hypothetical protein CICLE_v10006172mg [Citrus clementina][more]
gi|590657272|ref|XP_007034517.1|1.7e-7294.41GRIM-19 protein isoform 1 [Theobroma cacao][more]
gi|658051970|ref|XP_008361715.1|1.7e-7293.01PREDICTED: NADH dehydrogenase [ubiquinone][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009346GRIM-19
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G001260.1CmaCh17G001260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009346GRIM-19PANTHERPTHR12966NADH DEHYDROGENASE UBIQUINONE 1 ALPHA SUBCOMPLEX SUBUNIT 13coord: 14..140
score: 3.0
IPR009346GRIM-19PFAMPF06212GRIM-19coord: 20..138
score: 1.0
NoneNo IPR availablePANTHERPTHR12966:SF0NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 13coord: 14..140
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G001260Cucsa.383170Cucumber (Gy14) v1cgycmaB1055
CmaCh17G001260Cla007631Watermelon (97103) v1cmawmB358
CmaCh17G001260Csa2G169710Cucumber (Chinese Long) v2cmacuB350
CmaCh17G001260MELO3C023063Melon (DHL92) v3.5.1cmameB338
CmaCh17G001260ClCG06G007390Watermelon (Charleston Gray)cmawcgB328
CmaCh17G001260CSPI02G09850Wild cucumber (PI 183967)cmacpiB354
CmaCh17G001260CmoCh08G010200Cucurbita moschata (Rifu)cmacmoB365
CmaCh17G001260Lsi09G011790Bottle gourd (USVL1VR-Ls)cmalsiB331
CmaCh17G001260Cp4.1LG12g01190Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G001260Cp4.1LG17g02050Cucurbita pepo (Zucchini)cmacpeB388
CmaCh17G001260MELO3C023063.2Melon (DHL92) v3.6.1cmamedB394
CmaCh17G001260CsaV3_2G012290Cucumber (Chinese Long) v3cmacucB0418
CmaCh17G001260Cla97C06G117150Watermelon (97103) v2cmawmbB377
CmaCh17G001260Bhi12G001352Wax gourdcmawgoB0468
CmaCh17G001260CsGy2G009980Cucumber (Gy14) v2cgybcmaB193
CmaCh17G001260Carg11000Silver-seed gourdcarcmaB1489
CmaCh17G001260Carg10120Silver-seed gourdcarcmaB0314
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh17G001260CmaCh08G010490Cucurbita maxima (Rimu)cmacmaB373
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G001260Cucurbita maxima (Rimu)cmacmaB249
CmaCh17G001260Cucurbita maxima (Rimu)cmacmaB362
CmaCh17G001260Cucurbita maxima (Rimu)cmacmaB365
CmaCh17G001260Cucurbita maxima (Rimu)cmacmaB369
CmaCh17G001260Cucumber (Gy14) v1cgycmaB0715
CmaCh17G001260Cucurbita moschata (Rifu)cmacmoB350
CmaCh17G001260Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G001260Cucurbita moschata (Rifu)cmacmoB359
CmaCh17G001260Cucurbita moschata (Rifu)cmacmoB362
CmaCh17G001260Wild cucumber (PI 183967)cmacpiB360
CmaCh17G001260Cucumber (Chinese Long) v2cmacuB356
CmaCh17G001260Melon (DHL92) v3.5.1cmameB343
CmaCh17G001260Watermelon (Charleston Gray)cmawcgB319
CmaCh17G001260Watermelon (97103) v1cmawmB344
CmaCh17G001260Cucurbita pepo (Zucchini)cmacpeB402
CmaCh17G001260Cucurbita pepo (Zucchini)cmacpeB407
CmaCh17G001260Cucurbita pepo (Zucchini)cmacpeB411
CmaCh17G001260Bottle gourd (USVL1VR-Ls)cmalsiB356
CmaCh17G001260Cucumber (Gy14) v2cgybcmaB345
CmaCh17G001260Melon (DHL92) v3.6.1cmamedB398
CmaCh17G001260Silver-seed gourdcarcmaB0326
CmaCh17G001260Silver-seed gourdcarcmaB1079
CmaCh17G001260Silver-seed gourdcarcmaB1321
CmaCh17G001260Cucumber (Chinese Long) v3cmacucB0425
CmaCh17G001260Watermelon (97103) v2cmawmbB366
CmaCh17G001260Wax gourdcmawgoB0455