Cp4.1LG11g09610 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g09610
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	L18 ribosomal protein Heart Stopper
Location	Cp4.1LG11 : 8097753 .. 8098343 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTCCTCACATGATGTTATCCCAGAAGTTTTGATCACAGATAATCATCATTTTCATACTGCTTAAATGAATCCATCTTTGCATTAGAAAAATTACTTGCCCAGATTTATAAACCTTTGATTACTCTATCACAGGCTCATTATGCACCCAGAAGTTTCTTTGGTGTGGAGGACTTCGTCGACGATGATAATAGTCGGCCATACACATACCAAAAGGGGAAGAAATCCAAAAATCCAAAAAAGCACATATCATTCAAACAACGGACGGTAGCCTACATGGAGCCATTTACACTCGACGTGTTCATCTCGAAGCGGTTTGTTTCAGCATCGCTCACGCACAGGGTGACTTGTAAACAAGTTGCAGTTGCAGGTACGAACTCGAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCGGACATTCCTGCTTGTTTGGCTGTAGGCCGTATTTTATCTGAGAGGGCTAAAGAAGCTGATGTTTATACTGCTAGTTATACTCCTAGAGAGAGAGATAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATCTATCTGGAGTAA

mRNA sequence

ATGAATATTTATAAACCTTTGATTACTCTATCACAGGCTCATTATGCACCCAGAAGTTTCTTTGGTGTGGAGGACTTCGTCGACGATGATAATAGTCGGCCATACACATACCAAAAGGGGAAGAAATCCAAAAATCCAAAAAAGCACATATCATTCAAACAACGGACGGTAGCCTACATGGAGCCATTTACACTCGACGTGTTCATCTCGAAGCGGTTTGTTTCAGCATCGCTCACGCACAGGGTGACTTGTAAACAAGTTGCAGTTGCAGGTACGAACTCGAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCGGACATTCCTGCTTGTTTGGCTGTAGGCCGTATTTTATCTGAGAGGGCTAAAGAAGCTGATGTTTATACTGCTAGTTATACTCCTAGAGAGAGAGATAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATCTATCTGGAGTAA

Coding sequence (CDS)

ATGAATATTTATAAACCTTTGATTACTCTATCACAGGCTCATTATGCACCCAGAAGTTTCTTTGGTGTGGAGGACTTCGTCGACGATGATAATAGTCGGCCATACACATACCAAAAGGGGAAGAAATCCAAAAATCCAAAAAAGCACATATCATTCAAACAACGGACGGTAGCCTACATGGAGCCATTTACACTCGACGTGTTCATCTCGAAGCGGTTTGTTTCAGCATCGCTCACGCACAGGGTGACTTGTAAACAAGTTGCAGTTGCAGGTACGAACTCGAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCGGACATTCCTGCTTGTTTGGCTGTAGGCCGTATTTTATCTGAGAGGGCTAAAGAAGCTGATGTTTATACTGCTAGTTATACTCCTAGAGAGAGAGATAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATCTATCTGGAGTAA

Protein sequence

MNIYKPLITLSQAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

Homology

[Close]

BLAST of Cp4.1LG11g09610 vs. TrEMBL
Match: A0A0A0LLI4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G013320 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 4.3e-74
Identity = 142/151 (94.04%), Postives = 148/151 (98.01%), Query Frame = 1


Query: 12  QAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 71
           + H APRSFFG+EDF+DDDNSRPYTYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISK
Sbjct: 37  EVHCAPRSFFGIEDFLDDDNSRPYTYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISK 96

Query: 72  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 131
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASY 156

Query: 132 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 163
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cp4.1LG11g09610 vs. TrEMBL
Match: A0A151SF91_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_024638 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 2.8e-73
Identity = 142/162 (87.65%), Postives = 152/162 (93.83%), Query Frame = 1


Query: 3   IYKPLITL--SQAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYM 62
           IY P   L   QAH APRSFFGVEDF+DDDNSRPYTYQKGKKSKNP KH+SFKQRT+AYM
Sbjct: 26  IYVPSCFLHNGQAHMAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPNKHVSFKQRTIAYM 85

Query: 63  EPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSER 122
           EPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSKDIKAVL+SRSDIPAC+A+GRILSER
Sbjct: 86  EPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILSER 145

Query: 123 AKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 163
           A+EADVYTASYTPR+RDKFEGKIRAVVQSLIDNGIDVK+YL+
Sbjct: 146 AREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGIDVKVYLD 187

[Close]

BLAST of Cp4.1LG11g09610 vs. TrEMBL
Match: A0A0I9QQ14_MEDSA (L18 ribosomal protein Heart Stopper OS=Medicago sativa GN=Heart Stopper PE=2 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 8.1e-73
Identity = 140/151 (92.72%), Postives = 147/151 (97.35%), Query Frame = 1


Query: 12  QAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 71
           QAH APRSFFGVEDFVDDDNSRPYTYQKGKKSKNP KHISFKQRTVAYMEPFTLDVFISK
Sbjct: 37  QAHMAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPNKHISFKQRTVAYMEPFTLDVFISK 96

Query: 72  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 131
           RFVSASLTHRVT KQVAVAGTNSKDIKAVL+SRSDIPAC+A+GRIL+ERA EADVYTASY
Sbjct: 97  RFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILAERAMEADVYTASY 156

Query: 132 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 163
           TPRERDKFEGKIRAVVQSLIDNGID+K+YL+
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDLKVYLD 187

[Close]

BLAST of Cp4.1LG11g09610 vs. TrEMBL
Match: A0A0S3SUE1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G340400 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 8.1e-73
Identity = 140/162 (86.42%), Postives = 152/162 (93.83%), Query Frame = 1


Query: 3   IYKPLITL--SQAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYM 62
           IY PL      +AH APRSFFGVEDF+DDDNSRPYTYQKGKKSKNP KHISFKQRT+AYM
Sbjct: 26  IYLPLCLFHNGRAHMAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPNKHISFKQRTIAYM 85

Query: 63  EPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSER 122
           EPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSKDIKAVL+SRSDIPAC+++G+ILSER
Sbjct: 86  EPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACISIGKILSER 145

Query: 123 AKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 163
           A+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGID+K+YL+
Sbjct: 146 AREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDIKVYLD 187

[Close]

BLAST of Cp4.1LG11g09610 vs. TrEMBL
Match: A0A0S3SIT6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G161500 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.4e-72
Identity = 140/163 (85.89%), Postives = 153/163 (93.87%), Query Frame = 1


Query: 2   NIYKP--LITLSQAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAY 61
           +IY P  L    +AH APRSFFGVEDF+DDDNSRPYTYQKGKKSKNP KHISFKQRT+AY
Sbjct: 25  SIYVPSCLFHNGRAHMAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPNKHISFKQRTIAY 84

Query: 62  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSE 121
           MEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSKDIKAVL+SRSDIPAC+++G+ILSE
Sbjct: 85  MEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACISIGKILSE 144

Query: 122 RAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 163
           RA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGID+K+YL+
Sbjct: 145 RAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDIKVYLD 187

[Close]

BLAST of Cp4.1LG11g09610 vs. TAIR10
Match: AT1G08845.2 (AT1G08845.2 Ribosomal L18p/L5e family protein)

HSP 1 Score: 270.0 bits (689), Expect = 9.4e-73
Identity = 132/148 (89.19%), Postives = 144/148 (97.30%), Query Frame = 1


Query: 15  YAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFV 74
           +APRSFFGVED+VDDD SRPYTYQK KKSKNP KH+SFKQRTVAYMEPFTLDVFISKRFV
Sbjct: 87  FAPRSFFGVEDYVDDDTSRPYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFV 146

Query: 75  SASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPR 134
           SASLTHRVTC+QVAVAGTNSKD+KAVL+SR DIPAC+++GRILSERAKEADVYTASYTPR
Sbjct: 147 SASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPR 206

Query: 135 ERDKFEGKIRAVVQSLIDNGIDVKIYLE 163
           ++DKFEGKIRAVVQSLIDNGIDVKIYL+
Sbjct: 207 DQDKFEGKIRAVVQSLIDNGIDVKIYLD 234

[Close]

BLAST of Cp4.1LG11g09610 vs. TAIR10
Match: AT3G22450.1 (AT3G22450.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 110.9 bits (276), Expect = 7.3e-25
Identity = 56/119 (47.06%), Postives = 82/119 (68.91%), Query Frame = 1


Query: 44  KNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQS 103
           K  ++  +F Q T  +  PF LD++ISK  V A + HRVT K V VA + SKD+K  L S
Sbjct: 179 KKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGS 238

Query: 104 RSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 163
           R ++ AC AVG +L++R+ E D++   YTPR+ DK EGK++ V+Q+LIDNG++VK+ L+
Sbjct: 239 RRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNVKVKLK 297

[Close]

BLAST of Cp4.1LG11g09610 vs. TAIR10
Match: AT3G20230.1 (AT3G20230.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 104.0 bits (258), Expect = 8.9e-23
Identity = 50/117 (42.74%), Postives = 81/117 (69.23%), Query Frame = 1


Query: 39  KGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIK 98
           +G+ +K P +  S+KQRT  YM PF L+VF S++F+ A + HR T K ++VA TN++DI+
Sbjct: 68  RGEAAKRPNRK-SWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIR 127

Query: 99  AVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 156
             + S  D  AC  +G++++ER+ EADVY  SY PR+ ++ EGK+  V+ ++ ++GI
Sbjct: 128 TNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

[Close]

BLAST of Cp4.1LG11g09610 vs. NCBI nr
Match: gi|659070510|ref|XP_008455473.1| (PREDICTED: uncharacterized protein LOC103495625 [Cucumis melo])

HSP 1 Score: 285.8 bits (730), Expect = 4.7e-74
Identity = 143/151 (94.70%), Postives = 148/151 (98.01%), Query Frame = 1


Query: 12  QAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 71
           + H APRSFFGVEDF+DDDNSRPYTYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISK
Sbjct: 37  EVHCAPRSFFGVEDFLDDDNSRPYTYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISK 96

Query: 72  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 131
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASY 156

Query: 132 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 163
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cp4.1LG11g09610 vs. NCBI nr
Match: gi|449442869|ref|XP_004139203.1| (PREDICTED: uncharacterized protein LOC101215592 [Cucumis sativus])

HSP 1 Score: 285.4 bits (729), Expect = 6.1e-74
Identity = 142/151 (94.04%), Postives = 148/151 (98.01%), Query Frame = 1


Query: 12  QAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 71
           + H APRSFFG+EDF+DDDNSRPYTYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISK
Sbjct: 37  EVHCAPRSFFGIEDFLDDDNSRPYTYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISK 96

Query: 72  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 131
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASY 156

Query: 132 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 163
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cp4.1LG11g09610 vs. NCBI nr
Match: gi|1012342305|gb|KYP53500.1| (hypothetical protein KK1_024638 [Cajanus cajan])

HSP 1 Score: 282.7 bits (722), Expect = 4.0e-73
Identity = 142/162 (87.65%), Postives = 152/162 (93.83%), Query Frame = 1


Query: 3   IYKPLITL--SQAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYM 62
           IY P   L   QAH APRSFFGVEDF+DDDNSRPYTYQKGKKSKNP KH+SFKQRT+AYM
Sbjct: 26  IYVPSCFLHNGQAHMAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPNKHVSFKQRTIAYM 85

Query: 63  EPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSER 122
           EPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSKDIKAVL+SRSDIPAC+A+GRILSER
Sbjct: 86  EPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILSER 145

Query: 123 AKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 163
           A+EADVYTASYTPR+RDKFEGKIRAVVQSLIDNGIDVK+YL+
Sbjct: 146 AREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGIDVKVYLD 187

[Close]

BLAST of Cp4.1LG11g09610 vs. NCBI nr
Match: gi|965609967|dbj|BAT96458.1| (hypothetical protein VIGAN_08340400 [Vigna angularis var. angularis])

HSP 1 Score: 281.2 bits (718), Expect = 1.2e-72
Identity = 140/162 (86.42%), Postives = 152/162 (93.83%), Query Frame = 1


Query: 3   IYKPLITL--SQAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYM 62
           IY PL      +AH APRSFFGVEDF+DDDNSRPYTYQKGKKSKNP KHISFKQRT+AYM
Sbjct: 26  IYLPLCLFHNGRAHMAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPNKHISFKQRTIAYM 85

Query: 63  EPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSER 122
           EPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSKDIKAVL+SRSDIPAC+++G+ILSER
Sbjct: 86  EPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACISIGKILSER 145

Query: 123 AKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 163
           A+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGID+K+YL+
Sbjct: 146 AREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDIKVYLD 187

[Close]

BLAST of Cp4.1LG11g09610 vs. NCBI nr
Match: gi|899131465|tpg|DAA64882.1| (TPA_inf: L18 ribosomal protein Heart Stopper [Medicago sativa])

HSP 1 Score: 281.2 bits (718), Expect = 1.2e-72
Identity = 140/151 (92.72%), Postives = 147/151 (97.35%), Query Frame = 1


Query: 12  QAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 71
           QAH APRSFFGVEDFVDDDNSRPYTYQKGKKSKNP KHISFKQRTVAYMEPFTLDVFISK
Sbjct: 37  QAHMAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPNKHISFKQRTVAYMEPFTLDVFISK 96

Query: 72  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 131
           RFVSASLTHRVT KQVAVAGTNSKDIKAVL+SRSDIPAC+A+GRIL+ERA EADVYTASY
Sbjct: 97  RFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILAERAMEADVYTASY 156

Query: 132 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 163
           TPRERDKFEGKIRAVVQSLIDNGID+K+YL+
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDLKVYLD 187

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g09610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g09610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLI4_CUCSA	4.3e-74	94.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G013320 PE=4 SV=1	[more]
A0A151SF91_CAJCA	2.8e-73	87.65	Uncharacterized protein OS=Cajanus cajan GN=KK1_024638 PE=4 SV=1	[more]
A0A0I9QQ14_MEDSA	8.1e-73	92.72	L18 ribosomal protein Heart Stopper OS=Medicago sativa GN=Heart Stopper PE=2 SV=...	[more]
A0A0S3SUE1_PHAAN	8.1e-73	86.42	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G340400 PE=...	[more]
A0A0S3SIT6_PHAAN	1.4e-72	85.89	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G161500 PE=...	[more]

BLAST of Cp4.1LG11g09610 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08845.2	9.4e-73	89.19	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	7.3e-25	47.06	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	8.9e-23	42.74	Ribosomal L18p/L5e family protein	[more]

BLAST of Cp4.1LG11g09610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070510\|ref\|XP_008455473.1\|	4.7e-74	94.70	PREDICTED: uncharacterized protein LOC103495625 [Cucumis melo]	[more]
gi\|449442869\|ref\|XP_004139203.1\|	6.1e-74	94.04	PREDICTED: uncharacterized protein LOC101215592 [Cucumis sativus]	[more]
gi\|1012342305\|gb\|KYP53500.1\|	4.0e-73	87.65	hypothetical protein KK1_024638 [Cajanus cajan]	[more]
gi\|965609967\|dbj\|BAT96458.1\|	1.2e-72	86.42	hypothetical protein VIGAN_08340400 [Vigna angularis var. angularis]	[more]
gi\|899131465\|tpg\|DAA64882.1\|	1.2e-72	92.72	TPA_inf: L18 ribosomal protein Heart Stopper [Medicago sativa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR005484	Ribosomal_L18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0045492	xylan biosynthetic process
biological_process	GO:0048867	stem cell fate determination
biological_process	GO:0010152	pollen maturation
biological_process	GO:0006412	translation
biological_process	GO:0010073	meristem maintenance
biological_process	GO:0009846	pollen germination
biological_process	GO:0010413	glucuronoxylan metabolic process
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0016036	cellular response to phosphate starvation
biological_process	GO:0006875	cellular metal ion homeostasis
biological_process	GO:0070588	calcium ion transmembrane transport
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016529	sarcoplasmic reticulum
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005388	calcium-transporting ATPase activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g09610.1	Cp4.1LG11g09610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 41..156 score: 9.
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 61..157 score: 2.5
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 12..162 score: 2.0E
None	No IPR available	PANTHER	PTHR12899:SF5	RIBOSOMAL L18P/L5E FAMILY PROTEIN	coord: 12..162 score: 2.0E
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 41..155 score: 2.01

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g09610	Cucsa.133660	Cucumber (Gy14) v1	cgycpeB0351
Cp4.1LG11g09610	CmaCh05G011670	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g09610	CmoCh05G011900	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g09610	Csa2G013320	Cucumber (Chinese Long) v2	cpecuB103
Cp4.1LG11g09610	MELO3C004335	Melon (DHL92) v3.5.1	cpemeB099
Cp4.1LG11g09610	CSPI02G03410	Wild cucumber (PI 183967)	cpecpiB100
Cp4.1LG11g09610	Lsi11G004890	Bottle gourd (USVL1VR-Ls)	cpelsiB074
Cp4.1LG11g09610	MELO3C004335.2	Melon (DHL92) v3.6.1	cpemedB123
Cp4.1LG11g09610	CsaV3_2G004560	Cucumber (Chinese Long) v3	cpecucB0114
Cp4.1LG11g09610	Bhi06G001476	Wax gourd	cpewgoB0114
Cp4.1LG11g09610	Carg23419	Silver-seed gourd	carcpeB0410

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g09610	Cucurbita pepo (Zucchini)	cpecpeB001
Cp4.1LG11g09610	Cucurbita pepo (Zucchini)	cpecpeB139
Cp4.1LG11g09610	Cucurbita maxima (Rimu)	cmacpeB171
Cp4.1LG11g09610	Cucurbita moschata (Rifu)	cmocpeB051
Cp4.1LG11g09610	Cucurbita moschata (Rifu)	cmocpeB147
Cp4.1LG11g09610	Watermelon (Charleston Gray)	cpewcgB104
Cp4.1LG11g09610	Watermelon (97103) v1	cpewmB113
Cp4.1LG11g09610	Cucumber (Gy14) v2	cgybcpeB168
Cp4.1LG11g09610	Silver-seed gourd	carcpeB1005