Csa2G013320 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G013320
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	50S ribosomal protein L18-like protein; contains IPR005484 (Ribosomal protein L18/L5)
Location	Chr2 : 2347019 .. 2349314 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTTTCCTTCCAATTGTTTTCGGTTCTTAGTCATATTTTGTTTGATCCATTTCAAACGCAATAAGTGGTTTCAAATCCATTCTGATTTGAAATCCTTACAAGTCCCTTGGTCCCAAACAAAGGGTTTTGTCGCAGAAATTTGTTTTGCCTTTTGAATTTCCTTCATTTGTGTTCTGTTGGGTAATTCTCTTTCAGCTTTTCATATTATTTCTTTGTTTTCTTGATGGGTTTTGATTTTAAGCTGCCAATAATGCACATAACTTAGTTCGAATTCATGGCTTCTTCCATTTTTTTACTTGTTTTTAATATTTTAAATGCTCGCTAGTATGAACTTTGTATTGCCGGACAGCTGTTCGACACTATGCCGCATAAAAGTTGAACCTGTGTGTGTTCTTCTATCATAAAGTTAAGCCTTATCTAGTGTACTCATGCTTATTTAGTAGTTTAGTCCGTTTATTAAACCTTCGAGTCCTGAAATATTTCCATGTAGCTGGGAGGTATAATATTTCGCCTCTTTTTTTCTTTTAGGTGCTCATAGGAGCTGAAATCAGGTTCTTTCAGCACAAAAGAGCAAAGGGGGGTTGAGTTGGCTAGTAGAAGAAGGAAAAGATGTTGAAGCACTTTCTTGGAAATATGCGGAAACATGTGGTTTGTGCATGTGAAGTGAACAGGTTCAGGCCTTATTTGCTTGTGCCAACAAGTGACTTTCATAAAGGGGAGGTATAATTTCATCTCGTAGCTATATATTCTTGTTTTATAAATATTTCAGCTTTTAGTAAGTGAAACCTCCAAAATAAAAGACCACACACTATACATCTTTACATCACAAGATTCAACTCTTTGCATAATTTTACATAATAAGGTAACATTCCATACCAGAAAACAACGTTGACTTGCACCAAAAAGGCAATGTACCTAACAACAATATTATGGATCAAATAGTTTTGAAAAAGCTTTGGTTAGACCACACCAAGAAGCCGTATGAAGCTTGATTAGTTCGAATCATTTGGTGCCCCTTAAGAACCGTTTGGTTTCCAATATTTTGTTTGGTTTAGGAGCTTCGTTTCTTTTTTCATTTGGTTGTTGTTGTTTGTTGGCTATTAGGGAAATGACTTAGGTCACCTCACTTGTGTATTTGATTGAAGATTTTAGTTTTAGGCTTGGGAGAAGAGATGTTCAGGTTTTAAAAGTGTAAACTTAATGTTAAATTAATATTGAGCGATTAAAAACTTGTTTTGAAGTAATTTTGAATATCATAAAAGTGATTTTAACAATTTCTAAATTACTCTCATTCGTGTATTTAGTCATTTTCACATACGTATTATAGTTAGTTTGGTGGGTGGTTGGACTTTATCTCCTATAAATTGAAGGTCTTTCCAAAGATGCAAGGCAATTTTCATAAAACTAGTTAAGATTTTTACACCTCCTAAACTGAATAGCGTCTCTTCTATGATGCTTAAGAGGTGTTGATTTCAAACTTGGTAATTCGAGTTATAAAAATTCTACAAGTTTTCGATGTGAATTGTTTTAGGGCTAGACAGTAATTCTTATATAAGTTTGCCTAGACATCAACACTGATATAGAAGATCATATGTTCATATTTAATCACTAGGTATATCCCTATTTCCTCTTATTGGCTATCTTCTTGACTTCTAAAAGACTAACCTCGCTTGATGTTATACAAGAAGGTTTGGTGAATAATCATCATCGTGTTTTGATATTCATGCTGTTTAAATTATTTTCCATTTTTTGCATTAGAACAATCATTTGCTCAGATTGAGTCCAACTTTTTCAAACCTTTGGCTTTGATTATCCAATGCATGATTGATTGCTTTATCACAGGTTCATTGTGCACCCAGAAGTTTCTTTGGTATAGAGGACTTCTTAGATGATGATAATAGTCGGCCATACACATACCAGAAGTCGAAAAAATCCAAGAATCCAAAAAAGCACATCTCATTTAAGCAACGGACCTTAGCTTACATGGAACCATTTACACTTGACGTGTTCATCTCAAAGCGGTTTGTTTCAGCATCACTTACACACAGGGTGACTTGTAAACAAGTTGCTGTTGCAGGTACTAACTCAAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCAGATATACCTGCTTGTTTGGCCGTTGGCCGTATTTTAGCTGAGAGGGCTAGAGAAGCTGATGTTTATACCGCTAGTTATACTCCTAGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAATCTCTTATTGATAATGGGATTGATGTTAAAATTTATCTTGAATAA

mRNA sequence

ATGTTGAAGCACTTTCTTGGAAATATGCGGAAACATGTGGTTTGTGCATGTGAAGTGAACAGGTTCAGGCCTTATTTGCTTGTGCCAACAAGTGACTTTCATAAAGGGGAGGTTCATTGTGCACCCAGAAGTTTCTTTGGTATAGAGGACTTCTTAGATGATGATAATAGTCGGCCATACACATACCAGAAGTCGAAAAAATCCAAGAATCCAAAAAAGCACATCTCATTTAAGCAACGGACCTTAGCTTACATGGAACCATTTACACTTGACGTGTTCATCTCAAAGCGGTTTGTTTCAGCATCACTTACACACAGGGTGACTTGTAAACAAGTTGCTGTTGCAGGTACTAACTCAAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCAGATATACCTGCTTGTTTGGCCGTTGGCCGTATTTTAGCTGAGAGGGCTAGAGAAGCTGATGTTTATACCGCTAGTTATACTCCTAGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAATCTCTTATTGATAATGGGATTGATGTTAAAATTTATCTTGAATAA

Coding sequence (CDS)

ATGTTGAAGCACTTTCTTGGAAATATGCGGAAACATGTGGTTTGTGCATGTGAAGTGAACAGGTTCAGGCCTTATTTGCTTGTGCCAACAAGTGACTTTCATAAAGGGGAGGTTCATTGTGCACCCAGAAGTTTCTTTGGTATAGAGGACTTCTTAGATGATGATAATAGTCGGCCATACACATACCAGAAGTCGAAAAAATCCAAGAATCCAAAAAAGCACATCTCATTTAAGCAACGGACCTTAGCTTACATGGAACCATTTACACTTGACGTGTTCATCTCAAAGCGGTTTGTTTCAGCATCACTTACACACAGGGTGACTTGTAAACAAGTTGCTGTTGCAGGTACTAACTCAAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCAGATATACCTGCTTGTTTGGCCGTTGGCCGTATTTTAGCTGAGAGGGCTAGAGAAGCTGATGTTTATACCGCTAGTTATACTCCTAGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAATCTCTTATTGATAATGGGATTGATGTTAAAATTTATCTTGAATAA

Protein sequence

MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPYTYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE*

Homology

[Close]

BLAST of Csa2G013320 vs. TrEMBL
Match: A0A0A0LLI4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G013320 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 3.3e-102
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Csa2G013320 vs. TrEMBL
Match: A0A0I9QQR8_QUERO (L18 ribosomal protein Heart Stopper OS=Quercus robur GN=Heart Stopper PE=2 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 2.6e-83
Identity = 156/187 (83.42%), Postives = 169/187 (90.37%), Query Frame = 1


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLKH LG +    V A   ++FRPYL V TSD H G+VHCAPRSFFG+EDFLDDDNSRPY
Sbjct: 1   MLKHVLGKVCNRGVNAYGGDKFRPYLYVLTSDVHNGQVHCAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNP KH+SFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 61  TYQKEKKSKNPNKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKA L+SRSDIPACLA+GRILA+RAREADVYTASYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAALKSRSDIPACLAIGRILADRAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVK+YL+
Sbjct: 181 DVKVYLD 187

[Close]

BLAST of Csa2G013320 vs. TrEMBL
Match: K7KJN0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G122100 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.5e-81
Identity = 151/187 (80.75%), Postives = 168/187 (89.84%), Query Frame = 1


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLK  +G + +  V ACE NR  P++ VP+S FH G+ H APRSFFG+EDFLDDDNSRPY
Sbjct: 1   MLKQAIGRIFRTGVYACEGNRVLPWIYVPSSFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRILAERA+EADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 181 DIKVYLD 187

[Close]

BLAST of Csa2G013320 vs. TrEMBL
Match: A0A0R0JVC6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G309500 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 7.2e-81
Identity = 150/187 (80.21%), Postives = 167/187 (89.30%), Query Frame = 1


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLK  +G + +  V ACE NR  P++ VP+  FH G+ H APRSFFG+EDFLDDDNSRPY
Sbjct: 38  MLKQVIGRICRTDVYACEGNRVLPWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 97

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 98  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 157

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRILAERA+EADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 158 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 217

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 218 DIKVYLD 224

[Close]

BLAST of Csa2G013320 vs. TrEMBL
Match: I1KFI3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G309500 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 7.2e-81
Identity = 150/187 (80.21%), Postives = 167/187 (89.30%), Query Frame = 1


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLK  +G + +  V ACE NR  P++ VP+  FH G+ H APRSFFG+EDFLDDDNSRPY
Sbjct: 16  MLKQVIGRICRTDVYACEGNRVLPWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 75

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 76  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 135

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRILAERA+EADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 136 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 195

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 196 DIKVYLD 202

[Close]

BLAST of Csa2G013320 vs. TAIR10
Match: AT1G08845.2 (AT1G08845.2 Ribosomal L18p/L5e family protein)

HSP 1 Score: 278.9 bits (712), Expect = 2.4e-75
Identity = 136/189 (71.96%), Postives = 158/189 (83.60%), Query Frame = 1


Query: 1   MLKHFLG--NMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSR 60
           MLK  +   ++ K  +      + RP++   +  FH G    APRSFFG+ED++DDD SR
Sbjct: 46  MLKQVVAKYSIGKAAIYGSNREKLRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTSR 105

Query: 61  PYTYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTN 120
           PYTYQK KKSKNP KH+SFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTC+QVAVAGTN
Sbjct: 106 PYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTN 165

Query: 121 SKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDN 180
           SKD+KAVL+SR DIPAC+++GRIL+ERA+EADVYTASYTPR++DKFEGKIRAVVQSLIDN
Sbjct: 166 SKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDN 225

Query: 181 GIDVKIYLE 188
           GIDVKIYL+
Sbjct: 226 GIDVKIYLD 234

[Close]

BLAST of Csa2G013320 vs. TAIR10
Match: AT3G22450.1 (AT3G22450.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 114.4 bits (285), Expect = 7.7e-26
Identity = 59/134 (44.03%), Postives = 86/134 (64.18%), Query Frame = 1


Query: 54  DDNSRPYTYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVA 113
           +D+    T   ++  K  ++  +F Q T  +  PF LD++ISK  V A + HRVT K V 
Sbjct: 164 NDSFTGETDHPNEAVKKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVT 223

Query: 114 VAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQ 173
           VA + SKD+K  L SR ++ AC AVG +LA+R+ E D++   YTPR+ DK EGK++ V+Q
Sbjct: 224 VAHSISKDMKFDLGSRRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQ 283

Query: 174 SLIDNGIDVKIYLE 188
           +LIDNG++VK+ L+
Sbjct: 284 ALIDNGVNVKVKLK 297

[Close]

BLAST of Csa2G013320 vs. TAIR10
Match: AT3G20230.1 (AT3G20230.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 105.5 bits (262), Expect = 3.6e-23
Identity = 50/117 (42.74%), Postives = 78/117 (66.67%), Query Frame = 1


Query: 64  KSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIK 123
           + + +K P +  S+KQRT  YM PF L+VF S++F+ A + HR T K ++VA TN++DI+
Sbjct: 68  RGEAAKRPNRK-SWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIR 127

Query: 124 AVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
             + S  D  AC  +G+++AER+ EADVY  SY PR+ ++ EGK+  V+ ++ ++GI
Sbjct: 128 TNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

[Close]

BLAST of Csa2G013320 vs. NCBI nr
Match: gi|449442869|ref|XP_004139203.1| (PREDICTED: uncharacterized protein LOC101215592 [Cucumis sativus])

HSP 1 Score: 379.0 bits (972), Expect = 4.7e-102
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Csa2G013320 vs. NCBI nr
Match: gi|659070510|ref|XP_008455473.1| (PREDICTED: uncharacterized protein LOC103495625 [Cucumis melo])

HSP 1 Score: 374.8 bits (961), Expect = 8.9e-101
Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 1


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLKHFLGNM KHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFG+EDFLDDDNSRPY
Sbjct: 1   MLKHFLGNMGKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK+KKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Csa2G013320 vs. NCBI nr
Match: gi|899131469|tpg|DAA64884.1| (TPA_inf: L18 ribosomal protein Heart Stopper [Quercus robur])

HSP 1 Score: 316.2 bits (809), Expect = 3.8e-83
Identity = 156/187 (83.42%), Postives = 169/187 (90.37%), Query Frame = 1


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLKH LG +    V A   ++FRPYL V TSD H G+VHCAPRSFFG+EDFLDDDNSRPY
Sbjct: 1   MLKHVLGKVCNRGVNAYGGDKFRPYLYVLTSDVHNGQVHCAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNP KH+SFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 61  TYQKEKKSKNPNKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKA L+SRSDIPACLA+GRILA+RAREADVYTASYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAALKSRSDIPACLAIGRILADRAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVK+YL+
Sbjct: 181 DVKVYLD 187

[Close]

BLAST of Csa2G013320 vs. NCBI nr
Match: gi|356508210|ref|XP_003522852.1| (PREDICTED: 50S ribosomal protein L18 [Glycine max])

HSP 1 Score: 309.7 bits (792), Expect = 3.5e-81
Identity = 151/187 (80.75%), Postives = 168/187 (89.84%), Query Frame = 1


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLK  +G + +  V ACE NR  P++ VP+S FH G+ H APRSFFG+EDFLDDDNSRPY
Sbjct: 1   MLKQAIGRIFRTGVYACEGNRVLPWIYVPSSFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRILAERA+EADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 181 DIKVYLD 187

[Close]

BLAST of Csa2G013320 vs. NCBI nr
Match: gi|947107812|gb|KRH56195.1| (hypothetical protein GLYMA_06G309500 [Glycine max])

HSP 1 Score: 308.1 bits (788), Expect = 1.0e-80
Identity = 150/187 (80.21%), Postives = 167/187 (89.30%), Query Frame = 1


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLK  +G + +  V ACE NR  P++ VP+  FH G+ H APRSFFG+EDFLDDDNSRPY
Sbjct: 38  MLKQVIGRICRTDVYACEGNRVLPWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 97

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 98  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 157

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRILAERA+EADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 158 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 217

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 218 DIKVYLD 224

The following BLAST results are available for this feature:

BLAST of Csa2G013320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLI4_CUCSA	3.3e-102	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G013320 PE=4 SV=1	[more]
A0A0I9QQR8_QUERO	2.6e-83	83.42	L18 ribosomal protein Heart Stopper OS=Quercus robur GN=Heart Stopper PE=2 SV=1	[more]
K7KJN0_SOYBN	2.5e-81	80.75	Uncharacterized protein OS=Glycine max GN=GLYMA_04G122100 PE=4 SV=1	[more]
A0A0R0JVC6_SOYBN	7.2e-81	80.21	Uncharacterized protein OS=Glycine max GN=GLYMA_06G309500 PE=4 SV=1	[more]
I1KFI3_SOYBN	7.2e-81	80.21	Uncharacterized protein OS=Glycine max GN=GLYMA_06G309500 PE=4 SV=1	[more]

BLAST of Csa2G013320 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08845.2	2.4e-75	71.96	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	7.7e-26	44.03	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	3.6e-23	42.74	Ribosomal L18p/L5e family protein	[more]

BLAST of Csa2G013320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442869\|ref\|XP_004139203.1\|	4.7e-102	100.00	PREDICTED: uncharacterized protein LOC101215592 [Cucumis sativus]	[more]
gi\|659070510\|ref\|XP_008455473.1\|	8.9e-101	98.40	PREDICTED: uncharacterized protein LOC103495625 [Cucumis melo]	[more]
gi\|899131469\|tpg\|DAA64884.1\|	3.8e-83	83.42	TPA_inf: L18 ribosomal protein Heart Stopper [Quercus robur]	[more]
gi\|356508210\|ref\|XP_003522852.1\|	3.5e-81	80.75	PREDICTED: 50S ribosomal protein L18 [Glycine max]	[more]
gi\|947107812\|gb\|KRH56195.1\|	1.0e-80	80.21	hypothetical protein GLYMA_06G309500 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005484	Ribosomal_L18

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU124011	cucumber EST collection version 3.0	transcribed_cluster
CU133443	cucumber EST collection version 3.0	transcribed_cluster
CU165202	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G013320.1	Csa2G013320.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU133443	CU133443	transcribed_cluster
CU165202	CU165202	transcribed_cluster
CU124011	CU124011	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 65..181 score: 4.
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 86..182 score: 1.4
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..187 score: 2.4E
None	No IPR available	PANTHER	PTHR12899:SF5	RIBOSOMAL L18P/L5E FAMILY PROTEIN	coord: 1..187 score: 2.4E
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 66..180 score: 3.14

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G013320	MELO3C004335	Melon (DHL92) v3.5.1	cumeB139
Csa2G013320	Lsi11G004890	Bottle gourd (USVL1VR-Ls)	culsiB098
Csa2G013320	MELO3C004335.2	Melon (DHL92) v3.6.1	cumedB132
Csa2G013320	Bhi06G001476	Wax gourd	cuwgoB137
Csa2G013320	CSPI02G03410	Wild cucumber (PI 183967)	cpicuB065
Csa2G013320	Cucsa.133660	Cucumber (Gy14) v1	cgycuB184
Csa2G013320	CmoCh05G011900	Cucurbita moschata (Rifu)	cmocuB783
Csa2G013320	Cp4.1LG11g09610	Cucurbita pepo (Zucchini)	cpecuB103
Csa2G013320	Carg23419	Silver-seed gourd	carcuB0324

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G013320	Cucurbita maxima (Rimu)	cmacuB173
Csa2G013320	Cucurbita maxima (Rimu)	cmacuB791
Csa2G013320	Cucurbita moschata (Rifu)	cmocuB157
Csa2G013320	Watermelon (Charleston Gray)	cuwcgB122
Csa2G013320	Watermelon (97103) v1	cuwmB147
Csa2G013320	Cucurbita pepo (Zucchini)	cpecuB820
Csa2G013320	Cucumber (Gy14) v2	cgybcuB056
Csa2G013320	Silver-seed gourd	carcuB0735
Csa2G013320	Watermelon (97103) v2	cuwmbB118