Carg23419 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23419
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L18
Location	Cucurbita_argyrosperma_scaffold_335 : 26560 .. 29298 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTGTAATGTAACAAAATGGAAACCCTAATTTATGAATTGAGACTCGAGAGACCTAAAGGGCTATAAGGAACCAAATCGAACAAAGGTGAAGTGCTGGTGAAAATGGCGTGGAGACGGGCTGCATCAATCTTTGTTCTTTTACATATTGGTCTCTCTTTTCTTAGCTTTTGAGCCAAAATCAACCGCGCTGATCTTCGCTTTCTCTCCCGTTTAATTTGTCTCTCAACGAACTGGCAGCTGATCCTTAACTTATTGCAGAAGCTGTGGAAGAAGTTTGAATTATTGAAGAAATTTGTTTCGCCATTCTCCCCTTCATTTTTATCCTATTGGGTATTCTCTATCAGCTCCTCATATTAATTTCTTTGTTTTCTTGATGGGGTTTTGGTTATGGATTGCCAATAATGCACATAACTTGTTCGGATTCATGGCTTCTTCCATTTGTTACTCGCTTTTGATATTTGAAATGTTCGATAGAAGGAATTATGTATTGCCTGCTAACTGTTCGACAAAATGCCTCATAGAGGTTGAATCTGTATGTGTGTTCTTCCGTGATGAATTTAAGCCTTCTCCAGCGTACCCGATGTTTATTTAGTAGTTTAATCCGTTTATTTACTCCTGAGATACTTCATGTGATTTGGGTGTTCATAGGAGTTGTAATCGGGTTCTTTCAGTACAAAAGCGGGGTTGGCTAGTAGAAGGAGGAAAAGATGTTGAAACACTTGCTTGGAAACATGCGGAAACATGCGGTTTGTGCATGTGAAGTAAACAGGGCCAGGCCTTATTTGTTTGTGCCAACAAGTGACTTTCATAAGGGGGAGGTAAGAATTTCTTCCCTTAGTTATCTATATGTTTGTTTTTAAATGTATATATTATTTTTTTCTAATAAGCAAAACCTCCAAAATAAGATACTACACACAATACATCTTCAAAATCACAATATTTCACTCTTTATATAATTTACATAATGAGGTAACATAGACTTTCACCAAAAAGGAATTTTACCCAGTAGTAATTTACTGGATTGAATAGTTTTGAAAAGCTTTGGATGGATCACAAGGAGAAGCCATATGAAGCTTGATTGATTCAAAGGTTTCTTCCCATGAGGAGCATTTGTTGTCAAAGATCTTCTTCTAAAACCAAATTCCCTTTGGTACTTGACAATGTTGATCCAAAGAATCCAAGCTTTTCCTTCGACACCCGTGACTGCTTAAGCAACCGTATATGTTACTTCTAGCTTTAGCACTGAAATTAATGGCCTAATCTCTTACAGATAACTTAAGAGATACCTCCCAAAAGCTTTACATAGGAACTGGGAGTTCATAGAATTTAGGATATGGATACCATATCATCCACTACGAGTTGACCCAATAATCATATAGCGAAGTTGTTATCTTAGATGTTGTAATGGCTAACAAGGGCTTTAGCCTAGTCTTTTTCGGTTTTCTTGTTTCGGTTATTCGTTTCTTGTTTTCGTGCGGAACAGGCTTGTTAGTTAGTTGTCGACTGGTGGCGGATTCTCTTAGTCGTTTTTTATAGCTGTTATTGTAGTTAGTTAGGTGGCTGAACATTATCTCCTATAAACTGGGGGTCTTACCAAAGGTGCAAGGAAAATTTCAGAAAACTAATGAAGATTTCTACGCCTTTGTAACGGAATTACATCTAAGACATCTAAGAGGTGTCAACTTCAAACTAGGTAACTAGAATTATAAATATTCTACGAGTTTTCAATATCAACTGTCGAGGGGCTTCTGTGAGATCCCACATCTATTGGAGAGGGAAAGGAGAGGGAAACGAACCATTCTTTATAAGGGTATGAAAATCTCTCTCTAGCAGATGCGTTTTAAAACCTTGAGAGGAAGCTCGAAAAAAAAAGTCCAAAGAGGACAATATCTTCTAGTGGTGGGCTTGGGCCGTTACTAATTCATAGTAATCCTTATATAAGTTTTGCCTTGGACACCAACAATGATAGAGAAAATCACACATTCAAATTTAATCAATATCTGTATCCCTATATCATCTTATTGCCTACTCTTTTGACTTCTACATGATGTTATCATTCTCATACTGCTTAAATCAATCCATCTCTTGCATTAGAAAAATTACTTGCCCAGATTTATAAACCTTTGATTACTCCATCACAGGCTCATTATGCACCCAGAAGTTTCTTTGGTGTGGAGGACTTCGTCGACGATGATAATAGTCGGCCATACACATACCAAAAGGGGAAGAAATCCAAAAATCCAAAAAAGCACATATCATTCAAACAACGGACGGTAGCCTACATGGAACCATTTACACTCGACGTGTTCATCTCGAAGCGGTTTGTTTCAGCATCGCTCACGCACAGGGTGACTTGTAAACAAGTTGCAGTTGCAGGTACGAACTCGAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCGGACATTCCTGCTTGTTTGGCCGTAGGCCGAATTTTATCTGAGAGGGCTAAAGAAGCTGATGTTTATACTGCTAGTTACACTCCTAGAGAGAGGGATAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATCTACCTGGAGTAAACAACCAATTATCCTTTTGAAATAACACTTTGGATTCTTCATTAATGCTCTTCTGAATCTTCTATTTAGGTGTGTTATTATATCAAGGTTTCGATACCGTGTGGTTTGTAGCGTTTGTTTCTGAACATCCAAGGCGAATGCTC

mRNA sequence

TGTTGTAATGTAACAAAATGGAAACCCTAATTTATGAATTGAGACTCGAGAGACCTAAAGGGCTATAAGGAACCAAATCGAACAAAGGTGAAGTGCTGGTGAAAATGGCGTGGAGACGGGCTGCATCAATCTTTGTTCTTTTACATATTGGTCTCTCTTTTCTTAGCTTTTGAGCCAAAATCAACCGCGCTGATCTTCGCTTTCTCTCCCGTTTAATTTGTCTCTCAACGAACTGGCAGCTGATCCTTAACTTATTGCAGAAGCTGTGGAAGAAGTTTGAATTATTGAAGAAATTTGTTTCGCCATTCTCCCCTTCATTTTTATCCTATTGGGTATTCTCTATCAGCTCCTCATATTAATTTCTTTGTTTTCTTGATGGGGTTTTGGTTATGGATTGCCAATAATGCACATAACTTGTTCGGATTCATGGCTTCTTCCATTTGTTACTCGCTTTTGATATTTGAAATGTTCGATAGAAGGAATTATGTATTGCCTGCTAACTGTTCGACAAAATGCCTCATAGAGGTTGAATCTGTATGTGTGTTCTTCCGTGATGAATTTAAGCCTTCTCCAGCGTACCCGATGTTTATTTAGTAGTTTAATCCGTTTATTTACTCCTGAGATACTTCATGTGATTTGGGTGTTCATAGGAGTTGTAATCGGGTTCTTTCAGTACAAAAGCGGGGTTGGCTAGTAGAAGGAGGAAAAGATGTTGAAACACTTGCTTGGAAACATGCGGAAACATGCGGTTTGTGCATGTGAAGTAAACAGGGCCAGGCCTTATTTGTTTGTGCCAACAAGTGACTTTCATAAGGGGGAGGCTCATTATGCACCCAGAAGTTTCTTTGGTGTGGAGGACTTCGTCGACGATGATAATAGTCGGCCATACACATACCAAAAGGGGAAGAAATCCAAAAATCCAAAAAAGCACATATCATTCAAACAACGGACGGTAGCCTACATGGAACCATTTACACTCGACGTGTTCATCTCGAAGCGGTTTGTTTCAGCATCGCTCACGCACAGGGTGACTTGTAAACAAGTTGCAGTTGCAGGTACGAACTCGAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCGGACATTCCTGCTTGTTTGGCCGTAGGCCGAATTTTATCTGAGAGGGCTAAAGAAGCTGATGTTTATACTGCTAGTTACACTCCTAGAGAGAGGGATAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATCTACCTGGAGTAAACAACCAATTATCCTTTTGAAATAACACTTTGGATTCTTCATTAATGCTCTTCTGAATCTTCTATTTAGGTGTGTTATTATATCAAGGTTTCGATACCGTGTGGTTTGTAGCGTTTGTTTCTGAACATCCAAGGCGAATGCTC

Coding sequence (CDS)

ATGTTGAAACACTTGCTTGGAAACATGCGGAAACATGCGGTTTGTGCATGTGAAGTAAACAGGGCCAGGCCTTATTTGTTTGTGCCAACAAGTGACTTTCATAAGGGGGAGGCTCATTATGCACCCAGAAGTTTCTTTGGTGTGGAGGACTTCGTCGACGATGATAATAGTCGGCCATACACATACCAAAAGGGGAAGAAATCCAAAAATCCAAAAAAGCACATATCATTCAAACAACGGACGGTAGCCTACATGGAACCATTTACACTCGACGTGTTCATCTCGAAGCGGTTTGTTTCAGCATCGCTCACGCACAGGGTGACTTGTAAACAAGTTGCAGTTGCAGGTACGAACTCGAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCGGACATTCCTGCTTGTTTGGCCGTAGGCCGAATTTTATCTGAGAGGGCTAAAGAAGCTGATGTTTATACTGCTAGTTACACTCCTAGAGAGAGGGATAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATCTACCTGGAGTAA

Protein sequence

MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

Homology

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BLAST of Carg23419 vs. NCBI nr
Match: XP_022946296.1 (uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_022946297.1 uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_023546735.1 uncharacterized protein LOC111805749 [Cucurbita pepo subsp. pepo] >XP_023546736.1 uncharacterized protein LOC111805749 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.9 bits (964), Expect = 7.8e-101
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY
Sbjct: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

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BLAST of Carg23419 vs. NCBI nr
Match: XP_022999138.1 (uncharacterized protein LOC111493611 [Cucurbita maxima] >XP_022999139.1 uncharacterized protein LOC111493611 [Cucurbita maxima])

HSP 1 Score: 371.3 bits (952), Expect = 1.9e-99
Identity = 183/187 (97.86%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKHLLGNMRKH VC+CEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY
Sbjct: 1   MLKHLLGNMRKHVVCSCEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNPKKH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

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BLAST of Carg23419 vs. NCBI nr
Match: XP_004139203.1 (PREDICTED: uncharacterized protein LOC101215592 [Cucumis sativus] >KGN60851.1 hypothetical protein Csa_2G013320 [Cucumis sativus])

HSP 1 Score: 355.9 bits (912), Expect = 8.3e-95
Identity = 175/187 (93.58%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKH LGNMRKH VCACEVNR RPYL VPTSDFHKGE H APRSFFG+EDF+DDDNSRPY
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

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BLAST of Carg23419 vs. NCBI nr
Match: XP_022150717.1 (uncharacterized protein LOC111018783 [Momordica charantia] >XP_022150718.1 uncharacterized protein LOC111018783 [Momordica charantia])

HSP 1 Score: 354.4 bits (908), Expect = 2.4e-94
Identity = 174/187 (93.05%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKH LG MRKH VC CEVNR RPY FVPTSDFHKGE H+APRSFFGVEDF+DDDNSRPY
Sbjct: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVG IL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

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BLAST of Carg23419 vs. NCBI nr
Match: XP_008455473.1 (PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008455482.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo])

HSP 1 Score: 353.6 bits (906), Expect = 4.1e-94
Identity = 175/187 (93.58%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKH LGNM KH VCACEVNR RPYL VPTSDFHKGE H APRSFFGVEDF+DDDNSRPY
Sbjct: 1   MLKHFLGNMGKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

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BLAST of Carg23419 vs. TAIR10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 284.3 bits (726), Expect = 5.6e-77
Identity = 142/189 (75.13%), Postives = 163/189 (86.24%), Query Frame = 0


Query: 1   MLKHLLG--NMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSR 60
           MLK ++   ++ K A+      + RP++   +  FH G   +APRSFFGVED+VDDD SR
Sbjct: 46  MLKQVVAKYSIGKAAIYGSNREKLRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTSR 105

Query: 61  PYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTN 120
           PYTYQK KKSKNP KH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTC+QVAVAGTN
Sbjct: 106 PYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTN 165

Query: 121 SKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDN 180
           SKD+KAVL+SR DIPAC+++GRILSERAKEADVYTASYTPR++DKFEGKIRAVVQSLIDN
Sbjct: 166 SKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDN 225

Query: 181 GIDVKIYLE 188
           GIDVKIYL+
Sbjct: 226 GIDVKIYLD 234

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BLAST of Carg23419 vs. TAIR10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 110.9 bits (276), Expect = 8.4e-25
Identity = 56/119 (47.06%), Postives = 82/119 (68.91%), Query Frame = 0


Query: 69  KNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQS 128
           K  ++  +F Q T  +  PF LD++ISK  V A + HRVT K V VA + SKD+K  L S
Sbjct: 179 KKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGS 238

Query: 129 RSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 188
           R ++ AC AVG +L++R+ E D++   YTPR+ DK EGK++ V+Q+LIDNG++VK+ L+
Sbjct: 239 RRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNVKVKLK 297

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BLAST of Carg23419 vs. TAIR10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-22
Identity = 50/117 (42.74%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 64  KGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIK 123
           +G+ +K P +  S+KQRT  YM PF L+VF S++F+ A + HR T K ++VA TN++DI+
Sbjct: 68  RGEAAKRPNRK-SWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIR 127

Query: 124 AVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
             + S  D  AC  +G++++ER+ EADVY  SY PR+ ++ EGK+  V+ ++ ++GI
Sbjct: 128 TNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

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BLAST of Carg23419 vs. Swiss-Prot
Match: sp|B1Z777|RL18_METPB (50S ribosomal protein L18 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) OX=441620 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 6.0e-04
Identity = 29/92 (31.52%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 90  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEA 149
           L VF S + +   +      + +A A +  KD+KA L++ +D  A  AVG++++ERAK A
Sbjct: 29  LSVFRSSKQIYVQVIDDAVGRTLAAASSLDKDLKASLKTGADKAAAEAVGKLVAERAKAA 88

Query: 150 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
            V T     R    F G+++A+  +  + G+D
Sbjct: 89  GV-TKVVFDRSGYIFHGRVKALADAAREGGLD 119

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BLAST of Carg23419 vs. Swiss-Prot
Match: sp|A5FZU9|RL18_ACICJ (50S ribosomal protein L18 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.8e-04
Identity = 29/110 (26.36%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 72  KKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSD 131
           ++ + ++ R  A+  P  L VF S + + A +      + +A A +    +++ L++ +D
Sbjct: 12  RQRLRYQIRLKAHGRP-RLSVFRSGKHIYAQVIDDAAGRTLAAASSLDAGLRSALKTGAD 71

Query: 132 IPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
             A  AVG++++ERAKEA V T     R    + G+++A+ ++  ++G+D
Sbjct: 72  KAAAAAVGKLVAERAKEAGV-TQVVFDRGAYMYHGRVKALAEAARESGLD 119

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BLAST of Carg23419 vs. Swiss-Prot
Match: sp|C4Z2U6|RL18_EUBE2 (50S ribosomal protein L18 OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) OX=515620 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.8e-04
Identity = 32/119 (26.89%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 63  QKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDI 122
           +K +     +KH   + R     E   L VF S   + A +      K +  A T  K++
Sbjct: 4   KKSRTVVREQKHRRLRNRFSGTAERPRLAVFRSNNHMYAQIIDDTVGKTLVSASTLDKEV 63

Query: 123 KAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
           KA L+  +++ A  AVG ++++RA E  + T  Y  R    + GKI+A+ ++  + G++
Sbjct: 64  KAELEKTNNVEAAAAVGTVVAKRALEKGIKTVVY-DRGGFIYAGKIKALAEAAREAGLE 121

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BLAST of Carg23419 vs. Swiss-Prot
Match: sp|B1LWR0|RL18_METRJ (50S ribosomal protein L18 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831 / NBRC 15690 / NCIMB 10815 / 0-1) OX=426355 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.8e-04
Identity = 28/92 (30.43%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 90  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEA 149
           L VF S + +   +   V  K +A A +  K +K  L++ +D+ A  AVG++++ERAK A
Sbjct: 29  LSVFRSSKQIYVQVIDDVAGKTLASASSIDKALKGELKTGADVAAATAVGKLVAERAKAA 88

Query: 150 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
            V T     R    + G+++AV ++  + G++
Sbjct: 89  GV-TKVIFDRSGYIYHGRVKAVAEAAREGGLE 119

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BLAST of Carg23419 vs. TrEMBL
Match: tr|A0A0A0LLI4|A0A0A0LLI4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 5.5e-95
Identity = 175/187 (93.58%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKH LGNMRKH VCACEVNR RPYL VPTSDFHKGE H APRSFFG+EDF+DDDNSRPY
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Carg23419 vs. TrEMBL
Match: tr|A0A1S3C286|A0A1S3C286_CUCME (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.7e-94
Identity = 175/187 (93.58%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKH LGNM KH VCACEVNR RPYL VPTSDFHKGE H APRSFFGVEDF+DDDNSRPY
Sbjct: 1   MLKHFLGNMGKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Carg23419 vs. TrEMBL
Match: tr|K7KJN0|K7KJN0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100804348 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.8e-82
Identity = 153/187 (81.82%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLK  +G + +  V ACE NR  P+++VP+S FH G+AH APRSFFGVEDF+DDDNSRPY
Sbjct: 1   MLKQAIGRIFRTGVYACEGNRVLPWIYVPSSFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRIL+ERAKEADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 181 DIKVYLD 187

[Close]

BLAST of Carg23419 vs. TrEMBL
Match: tr|I1KFI3|I1KFI3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100805468 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 7.0e-82
Identity = 152/187 (81.28%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLK ++G + +  V ACE NR  P+++VP+  FH G+AH APRSFFGVEDF+DDDNSRPY
Sbjct: 16  MLKQVIGRICRTDVYACEGNRVLPWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 75

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 76  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 135

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRIL+ERAKEADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 136 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 195

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 196 DIKVYLD 202

[Close]

BLAST of Carg23419 vs. TrEMBL
Match: tr|A0A0R0JVC6|A0A0R0JVC6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100805468 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 7.0e-82
Identity = 152/187 (81.28%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLK ++G + +  V ACE NR  P+++VP+  FH G+AH APRSFFGVEDF+DDDNSRPY
Sbjct: 38  MLKQVIGRICRTDVYACEGNRVLPWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 97

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 98  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 157

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRIL+ERAKEADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 158 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 217

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 218 DIKVYLD 224

The following BLAST results are available for this feature:

BLAST of Carg23419 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946296.1	7.8e-101	100.00	uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_022946297.1 unchar...	[more]
XP_022999138.1	1.9e-99	97.86	uncharacterized protein LOC111493611 [Cucurbita maxima] >XP_022999139.1 uncharac...	[more]
XP_004139203.1	8.3e-95	93.58	PREDICTED: uncharacterized protein LOC101215592 [Cucumis sativus] >KGN60851.1 hy...	[more]
XP_022150717.1	2.4e-94	93.05	uncharacterized protein LOC111018783 [Momordica charantia] >XP_022150718.1 uncha...	[more]
XP_008455473.1	4.1e-94	93.58	PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008455482.1 PREDICTED: 5...	[more]

BLAST of Carg23419 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08845.2	5.6e-77	75.13	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	8.4e-25	47.06	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	1.0e-22	42.74	Ribosomal L18p/L5e family protein	[more]

BLAST of Carg23419 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B1Z777\|RL18_METPB	6.0e-04	31.52	50S ribosomal protein L18 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIM...	[more]
sp\|A5FZU9\|RL18_ACICJ	7.8e-04	26.36	50S ribosomal protein L18 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rpl...	[more]
sp\|C4Z2U6\|RL18_EUBE2	7.8e-04	26.89	50S ribosomal protein L18 OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48...	[more]
sp\|B1LWR0\|RL18_METRJ	7.8e-04	30.43	50S ribosomal protein L18 OS=Methylobacterium radiotolerans (strain ATCC 27329 /...	[more]

BLAST of Carg23419 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LLI4\|A0A0A0LLI4_CUCSA	5.5e-95	93.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1	[more]
tr\|A0A1S3C286\|A0A1S3C286_CUCME	2.7e-94	93.58	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1	[more]
tr\|K7KJN0\|K7KJN0_SOYBN	1.8e-82	81.82	Uncharacterized protein OS=Glycine max OX=3847 GN=100804348 PE=4 SV=1	[more]
tr\|I1KFI3\|I1KFI3_SOYBN	7.0e-82	81.28	Uncharacterized protein OS=Glycine max OX=3847 GN=100805468 PE=4 SV=1	[more]
tr\|A0A0R0JVC6\|A0A0R0JVC6_SOYBN	7.0e-82	81.28	Uncharacterized protein OS=Glycine max OX=3847 GN=100805468 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR005484	Ribosomal_L18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23419-RA	Carg23419-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 66..181 e-value: 1.5E-8 score: 34.9
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..187
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 85..181 e-value: 1.4E-13 score: 53.3
None	No IPR available	PANTHER	PTHR12899:SF5	RIBOSOMAL L18P/L5E FAMILY PROTEIN	coord: 1..187
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 78..180 e-value: 9.5065E-21 score: 82.2027
None	No IPR available	SUPERFAMILY	SSF53137	Translational machinery components	coord: 66..180

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23419	Csa2G013320	Cucumber (Chinese Long) v2	carcuB0324
Carg23419	MELO3C004335	Melon (DHL92) v3.5.1	carmeB0298
Carg23419	CSPI02G03410	Wild cucumber (PI 183967)	carcpiB0330
Carg23419	Cucsa.133660	Cucumber (Gy14) v1	carcgyB0349
Carg23419	CmaCh05G011670	Cucurbita maxima (Rimu)	carcmaB0410
Carg23419	CmoCh05G011900	Cucurbita moschata (Rifu)	carcmoB0405
Carg23419	Lsi11G004890	Bottle gourd (USVL1VR-Ls)	carlsiB271
Carg23419	Cp4.1LG11g09610	Cucurbita pepo (Zucchini)	carcpeB0410
Carg23419	MELO3C004335.2	Melon (DHL92) v3.6.1	carmedB0309
Carg23419	CsaV3_2G004560	Cucumber (Chinese Long) v3	carcucB0330
Carg23419	Bhi06G001476	Wax gourd	carwgoB0384

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23419	Watermelon (97103) v2	carwmbB0306
Carg23419	Silver-seed gourd	carcarB325
Carg23419	Cucumber (Gy14) v2	carcgybB0310
Carg23419	Cucurbita maxima (Rimu)	carcmaB0409
Carg23419	Cucurbita moschata (Rifu)	carcmoB0404
Carg23419	Cucurbita pepo (Zucchini)	carcpeB0411
Carg23419	Watermelon (Charleston Gray)	carwcgB0290
Carg23419	Watermelon (97103) v1	carwmB0290