Carg23419-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23419-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L18
Location	Cucurbita_argyrosperma_scaffold_335 : 26560 .. 29298 (-)
Sequence length	1416

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTGTAATGTAACAAAATGGAAACCCTAATTTATGAATTGAGACTCGAGAGACCTAAAGGGCTATAAGGAACCAAATCGAACAAAGGTGAAGTGCTGGTGAAAATGGCGTGGAGACGGGCTGCATCAATCTTTGTTCTTTTACATATTGGTCTCTCTTTTCTTAGCTTTTGAGCCAAAATCAACCGCGCTGATCTTCGCTTTCTCTCCCGTTTAATTTGTCTCTCAACGAACTGGCAGCTGATCCTTAACTTATTGCAGAAGCTGTGGAAGAAGTTTGAATTATTGAAGAAATTTGTTTCGCCATTCTCCCCTTCATTTTTATCCTATTGGGTATTCTCTATCAGCTCCTCATATTAATTTCTTTGTTTTCTTGATGGGGTTTTGGTTATGGATTGCCAATAATGCACATAACTTGTTCGGATTCATGGCTTCTTCCATTTGTTACTCGCTTTTGATATTTGAAATGTTCGATAGAAGGAATTATGTATTGCCTGCTAACTGTTCGACAAAATGCCTCATAGAGGTTGAATCTGTATGTGTGTTCTTCCGTGATGAATTTAAGCCTTCTCCAGCGTACCCGATGTTTATTTAGTAGTTTAATCCGTTTATTTACTCCTGAGATACTTCATGTGATTTGGGTGTTCATAGGAGTTGTAATCGGGTTCTTTCAGTACAAAAGCGGGGTTGGCTAGTAGAAGGAGGAAAAGATGTTGAAACACTTGCTTGGAAACATGCGGAAACATGCGGTTTGTGCATGTGAAGTAAACAGGGCCAGGCCTTATTTGTTTGTGCCAACAAGTGACTTTCATAAGGGGGAGGTAAGAATTTCTTCCCTTAGTTATCTATATGTTTGTTTTTAAATGTATATATTATTTTTTTCTAATAAGCAAAACCTCCAAAATAAGATACTACACACAATACATCTTCAAAATCACAATATTTCACTCTTTATATAATTTACATAATGAGGTAACATAGACTTTCACCAAAAAGGAATTTTACCCAGTAGTAATTTACTGGATTGAATAGTTTTGAAAAGCTTTGGATGGATCACAAGGAGAAGCCATATGAAGCTTGATTGATTCAAAGGTTTCTTCCCATGAGGAGCATTTGTTGTCAAAGATCTTCTTCTAAAACCAAATTCCCTTTGGTACTTGACAATGTTGATCCAAAGAATCCAAGCTTTTCCTTCGACACCCGTGACTGCTTAAGCAACCGTATATGTTACTTCTAGCTTTAGCACTGAAATTAATGGCCTAATCTCTTACAGATAACTTAAGAGATACCTCCCAAAAGCTTTACATAGGAACTGGGAGTTCATAGAATTTAGGATATGGATACCATATCATCCACTACGAGTTGACCCAATAATCATATAGCGAAGTTGTTATCTTAGATGTTGTAATGGCTAACAAGGGCTTTAGCCTAGTCTTTTTCGGTTTTCTTGTTTCGGTTATTCGTTTCTTGTTTTCGTGCGGAACAGGCTTGTTAGTTAGTTGTCGACTGGTGGCGGATTCTCTTAGTCGTTTTTTATAGCTGTTATTGTAGTTAGTTAGGTGGCTGAACATTATCTCCTATAAACTGGGGGTCTTACCAAAGGTGCAAGGAAAATTTCAGAAAACTAATGAAGATTTCTACGCCTTTGTAACGGAATTACATCTAAGACATCTAAGAGGTGTCAACTTCAAACTAGGTAACTAGAATTATAAATATTCTACGAGTTTTCAATATCAACTGTCGAGGGGCTTCTGTGAGATCCCACATCTATTGGAGAGGGAAAGGAGAGGGAAACGAACCATTCTTTATAAGGGTATGAAAATCTCTCTCTAGCAGATGCGTTTTAAAACCTTGAGAGGAAGCTCGAAAAAAAAAGTCCAAAGAGGACAATATCTTCTAGTGGTGGGCTTGGGCCGTTACTAATTCATAGTAATCCTTATATAAGTTTTGCCTTGGACACCAACAATGATAGAGAAAATCACACATTCAAATTTAATCAATATCTGTATCCCTATATCATCTTATTGCCTACTCTTTTGACTTCTACATGATGTTATCATTCTCATACTGCTTAAATCAATCCATCTCTTGCATTAGAAAAATTACTTGCCCAGATTTATAAACCTTTGATTACTCCATCACAGGCTCATTATGCACCCAGAAGTTTCTTTGGTGTGGAGGACTTCGTCGACGATGATAATAGTCGGCCATACACATACCAAAAGGGGAAGAAATCCAAAAATCCAAAAAAGCACATATCATTCAAACAACGGACGGTAGCCTACATGGAACCATTTACACTCGACGTGTTCATCTCGAAGCGGTTTGTTTCAGCATCGCTCACGCACAGGGTGACTTGTAAACAAGTTGCAGTTGCAGGTACGAACTCGAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCGGACATTCCTGCTTGTTTGGCCGTAGGCCGAATTTTATCTGAGAGGGCTAAAGAAGCTGATGTTTATACTGCTAGTTACACTCCTAGAGAGAGGGATAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATCTACCTGGAGTAAACAACCAATTATCCTTTTGAAATAACACTTTGGATTCTTCATTAATGCTCTTCTGAATCTTCTATTTAGGTGTGTTATTATATCAAGGTTTCGATACCGTGTGGTTTGTAGCGTTTGTTTCTGAACATCCAAGGCGAATGCTC

mRNA sequence

TGTTGTAATGTAACAAAATGGAAACCCTAATTTATGAATTGAGACTCGAGAGACCTAAAGGGCTATAAGGAACCAAATCGAACAAAGGTGAAGTGCTGGTGAAAATGGCGTGGAGACGGGCTGCATCAATCTTTGTTCTTTTACATATTGGTCTCTCTTTTCTTAGCTTTTGAGCCAAAATCAACCGCGCTGATCTTCGCTTTCTCTCCCGTTTAATTTGTCTCTCAACGAACTGGCAGCTGATCCTTAACTTATTGCAGAAGCTGTGGAAGAAGTTTGAATTATTGAAGAAATTTGTTTCGCCATTCTCCCCTTCATTTTTATCCTATTGGGTATTCTCTATCAGCTCCTCATATTAATTTCTTTGTTTTCTTGATGGGGTTTTGGTTATGGATTGCCAATAATGCACATAACTTGTTCGGATTCATGGCTTCTTCCATTTGTTACTCGCTTTTGATATTTGAAATGTTCGATAGAAGGAATTATGTATTGCCTGCTAACTGTTCGACAAAATGCCTCATAGAGGTTGAATCTGTATGTGTGTTCTTCCGTGATGAATTTAAGCCTTCTCCAGCGTACCCGATGTTTATTTAGTAGTTTAATCCGTTTATTTACTCCTGAGATACTTCATGTGATTTGGGTGTTCATAGGAGTTGTAATCGGGTTCTTTCAGTACAAAAGCGGGGTTGGCTAGTAGAAGGAGGAAAAGATGTTGAAACACTTGCTTGGAAACATGCGGAAACATGCGGTTTGTGCATGTGAAGTAAACAGGGCCAGGCCTTATTTGTTTGTGCCAACAAGTGACTTTCATAAGGGGGAGGCTCATTATGCACCCAGAAGTTTCTTTGGTGTGGAGGACTTCGTCGACGATGATAATAGTCGGCCATACACATACCAAAAGGGGAAGAAATCCAAAAATCCAAAAAAGCACATATCATTCAAACAACGGACGGTAGCCTACATGGAACCATTTACACTCGACGTGTTCATCTCGAAGCGGTTTGTTTCAGCATCGCTCACGCACAGGGTGACTTGTAAACAAGTTGCAGTTGCAGGTACGAACTCGAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCGGACATTCCTGCTTGTTTGGCCGTAGGCCGAATTTTATCTGAGAGGGCTAAAGAAGCTGATGTTTATACTGCTAGTTACACTCCTAGAGAGAGGGATAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATCTACCTGGAGTAAACAACCAATTATCCTTTTGAAATAACACTTTGGATTCTTCATTAATGCTCTTCTGAATCTTCTATTTAGGTGTGTTATTATATCAAGGTTTCGATACCGTGTGGTTTGTAGCGTTTGTTTCTGAACATCCAAGGCGAATGCTC

Coding sequence (CDS)

ATGTTGAAACACTTGCTTGGAAACATGCGGAAACATGCGGTTTGTGCATGTGAAGTAAACAGGGCCAGGCCTTATTTGTTTGTGCCAACAAGTGACTTTCATAAGGGGGAGGCTCATTATGCACCCAGAAGTTTCTTTGGTGTGGAGGACTTCGTCGACGATGATAATAGTCGGCCATACACATACCAAAAGGGGAAGAAATCCAAAAATCCAAAAAAGCACATATCATTCAAACAACGGACGGTAGCCTACATGGAACCATTTACACTCGACGTGTTCATCTCGAAGCGGTTTGTTTCAGCATCGCTCACGCACAGGGTGACTTGTAAACAAGTTGCAGTTGCAGGTACGAACTCGAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCGGACATTCCTGCTTGTTTGGCCGTAGGCCGAATTTTATCTGAGAGGGCTAAAGAAGCTGATGTTTATACTGCTAGTTACACTCCTAGAGAGAGGGATAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATCTACCTGGAGTAA

Protein sequence

MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

Homology

[Close]

BLAST of Carg23419-RA vs. NCBI nr
Match: XP_022946296.1 (uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_022946297.1 uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_023546735.1 uncharacterized protein LOC111805749 [Cucurbita pepo subsp. pepo] >XP_023546736.1 uncharacterized protein LOC111805749 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.9 bits (964), Expect = 7.8e-101
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY
Sbjct: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Carg23419-RA vs. NCBI nr
Match: XP_022999138.1 (uncharacterized protein LOC111493611 [Cucurbita maxima] >XP_022999139.1 uncharacterized protein LOC111493611 [Cucurbita maxima])

HSP 1 Score: 371.3 bits (952), Expect = 1.9e-99
Identity = 183/187 (97.86%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKHLLGNMRKH VC+CEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY
Sbjct: 1   MLKHLLGNMRKHVVCSCEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNPKKH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Carg23419-RA vs. NCBI nr
Match: XP_004139203.1 (PREDICTED: uncharacterized protein LOC101215592 [Cucumis sativus] >KGN60851.1 hypothetical protein Csa_2G013320 [Cucumis sativus])

HSP 1 Score: 355.9 bits (912), Expect = 8.3e-95
Identity = 175/187 (93.58%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKH LGNMRKH VCACEVNR RPYL VPTSDFHKGE H APRSFFG+EDF+DDDNSRPY
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Carg23419-RA vs. NCBI nr
Match: XP_022150717.1 (uncharacterized protein LOC111018783 [Momordica charantia] >XP_022150718.1 uncharacterized protein LOC111018783 [Momordica charantia])

HSP 1 Score: 354.4 bits (908), Expect = 2.4e-94
Identity = 174/187 (93.05%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKH LG MRKH VC CEVNR RPY FVPTSDFHKGE H+APRSFFGVEDF+DDDNSRPY
Sbjct: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVG IL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Carg23419-RA vs. NCBI nr
Match: XP_008455473.1 (PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008455482.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo])

HSP 1 Score: 353.6 bits (906), Expect = 4.1e-94
Identity = 175/187 (93.58%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKH LGNM KH VCACEVNR RPYL VPTSDFHKGE H APRSFFGVEDF+DDDNSRPY
Sbjct: 1   MLKHFLGNMGKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Carg23419-RA vs. TAIR10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 284.3 bits (726), Expect = 5.6e-77
Identity = 142/189 (75.13%), Postives = 163/189 (86.24%), Query Frame = 0


Query: 1   MLKHLLG--NMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSR 60
           MLK ++   ++ K A+      + RP++   +  FH G   +APRSFFGVED+VDDD SR
Sbjct: 46  MLKQVVAKYSIGKAAIYGSNREKLRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTSR 105

Query: 61  PYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTN 120
           PYTYQK KKSKNP KH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTC+QVAVAGTN
Sbjct: 106 PYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTN 165

Query: 121 SKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDN 180
           SKD+KAVL+SR DIPAC+++GRILSERAKEADVYTASYTPR++DKFEGKIRAVVQSLIDN
Sbjct: 166 SKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDN 225

Query: 181 GIDVKIYLE 188
           GIDVKIYL+
Sbjct: 226 GIDVKIYLD 234

[Close]

BLAST of Carg23419-RA vs. TAIR10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 110.9 bits (276), Expect = 8.4e-25
Identity = 56/119 (47.06%), Postives = 82/119 (68.91%), Query Frame = 0


Query: 69  KNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQS 128
           K  ++  +F Q T  +  PF LD++ISK  V A + HRVT K V VA + SKD+K  L S
Sbjct: 179 KKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGS 238

Query: 129 RSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 188
           R ++ AC AVG +L++R+ E D++   YTPR+ DK EGK++ V+Q+LIDNG++VK+ L+
Sbjct: 239 RRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNVKVKLK 297

[Close]

BLAST of Carg23419-RA vs. TAIR10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-22
Identity = 50/117 (42.74%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 64  KGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIK 123
           +G+ +K P +  S+KQRT  YM PF L+VF S++F+ A + HR T K ++VA TN++DI+
Sbjct: 68  RGEAAKRPNRK-SWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIR 127

Query: 124 AVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
             + S  D  AC  +G++++ER+ EADVY  SY PR+ ++ EGK+  V+ ++ ++GI
Sbjct: 128 TNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

[Close]

BLAST of Carg23419-RA vs. Swiss-Prot
Match: sp|B1Z777|RL18_METPB (50S ribosomal protein L18 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) OX=441620 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 6.0e-04
Identity = 29/92 (31.52%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 90  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEA 149
           L VF S + +   +      + +A A +  KD+KA L++ +D  A  AVG++++ERAK A
Sbjct: 29  LSVFRSSKQIYVQVIDDAVGRTLAAASSLDKDLKASLKTGADKAAAEAVGKLVAERAKAA 88

Query: 150 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
            V T     R    F G+++A+  +  + G+D
Sbjct: 89  GV-TKVVFDRSGYIFHGRVKALADAAREGGLD 119

[Close]

BLAST of Carg23419-RA vs. Swiss-Prot
Match: sp|A5FZU9|RL18_ACICJ (50S ribosomal protein L18 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.8e-04
Identity = 29/110 (26.36%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 72  KKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSD 131
           ++ + ++ R  A+  P  L VF S + + A +      + +A A +    +++ L++ +D
Sbjct: 12  RQRLRYQIRLKAHGRP-RLSVFRSGKHIYAQVIDDAAGRTLAAASSLDAGLRSALKTGAD 71

Query: 132 IPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
             A  AVG++++ERAKEA V T     R    + G+++A+ ++  ++G+D
Sbjct: 72  KAAAAAVGKLVAERAKEAGV-TQVVFDRGAYMYHGRVKALAEAARESGLD 119

[Close]

BLAST of Carg23419-RA vs. Swiss-Prot
Match: sp|C4Z2U6|RL18_EUBE2 (50S ribosomal protein L18 OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) OX=515620 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.8e-04
Identity = 32/119 (26.89%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 63  QKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDI 122
           +K +     +KH   + R     E   L VF S   + A +      K +  A T  K++
Sbjct: 4   KKSRTVVREQKHRRLRNRFSGTAERPRLAVFRSNNHMYAQIIDDTVGKTLVSASTLDKEV 63

Query: 123 KAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
           KA L+  +++ A  AVG ++++RA E  + T  Y  R    + GKI+A+ ++  + G++
Sbjct: 64  KAELEKTNNVEAAAAVGTVVAKRALEKGIKTVVY-DRGGFIYAGKIKALAEAAREAGLE 121

[Close]

BLAST of Carg23419-RA vs. Swiss-Prot
Match: sp|B1LWR0|RL18_METRJ (50S ribosomal protein L18 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831 / NBRC 15690 / NCIMB 10815 / 0-1) OX=426355 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.8e-04
Identity = 28/92 (30.43%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 90  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEA 149
           L VF S + +   +   V  K +A A +  K +K  L++ +D+ A  AVG++++ERAK A
Sbjct: 29  LSVFRSSKQIYVQVIDDVAGKTLASASSIDKALKGELKTGADVAAATAVGKLVAERAKAA 88

Query: 150 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
            V T     R    + G+++AV ++  + G++
Sbjct: 89  GV-TKVIFDRSGYIYHGRVKAVAEAAREGGLE 119

[Close]

BLAST of Carg23419-RA vs. TrEMBL
Match: tr|A0A0A0LLI4|A0A0A0LLI4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 5.5e-95
Identity = 175/187 (93.58%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKH LGNMRKH VCACEVNR RPYL VPTSDFHKGE H APRSFFG+EDF+DDDNSRPY
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Carg23419-RA vs. TrEMBL
Match: tr|A0A1S3C286|A0A1S3C286_CUCME (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.7e-94
Identity = 175/187 (93.58%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKH LGNM KH VCACEVNR RPYL VPTSDFHKGE H APRSFFGVEDF+DDDNSRPY
Sbjct: 1   MLKHFLGNMGKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Carg23419-RA vs. TrEMBL
Match: tr|K7KJN0|K7KJN0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100804348 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.8e-82
Identity = 153/187 (81.82%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLK  +G + +  V ACE NR  P+++VP+S FH G+AH APRSFFGVEDF+DDDNSRPY
Sbjct: 1   MLKQAIGRIFRTGVYACEGNRVLPWIYVPSSFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRIL+ERAKEADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 181 DIKVYLD 187

[Close]

BLAST of Carg23419-RA vs. TrEMBL
Match: tr|I1KFI3|I1KFI3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100805468 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 7.0e-82
Identity = 152/187 (81.28%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLK ++G + +  V ACE NR  P+++VP+  FH G+AH APRSFFGVEDF+DDDNSRPY
Sbjct: 16  MLKQVIGRICRTDVYACEGNRVLPWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 75

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 76  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 135

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRIL+ERAKEADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 136 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 195

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 196 DIKVYLD 202

[Close]

BLAST of Carg23419-RA vs. TrEMBL
Match: tr|A0A0R0JVC6|A0A0R0JVC6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100805468 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 7.0e-82
Identity = 152/187 (81.28%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLK ++G + +  V ACE NR  P+++VP+  FH G+AH APRSFFGVEDF+DDDNSRPY
Sbjct: 38  MLKQVIGRICRTDVYACEGNRVLPWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 97

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 98  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 157

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRIL+ERAKEADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 158 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 217

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 218 DIKVYLD 224

The following BLAST results are available for this feature:

BLAST of Carg23419-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946296.1	7.8e-101	100.00	uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_022946297.1 unchar...	[more]
XP_022999138.1	1.9e-99	97.86	uncharacterized protein LOC111493611 [Cucurbita maxima] >XP_022999139.1 uncharac...	[more]
XP_004139203.1	8.3e-95	93.58	PREDICTED: uncharacterized protein LOC101215592 [Cucumis sativus] >KGN60851.1 hy...	[more]
XP_022150717.1	2.4e-94	93.05	uncharacterized protein LOC111018783 [Momordica charantia] >XP_022150718.1 uncha...	[more]
XP_008455473.1	4.1e-94	93.58	PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008455482.1 PREDICTED: 5...	[more]

BLAST of Carg23419-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08845.2	5.6e-77	75.13	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	8.4e-25	47.06	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	1.0e-22	42.74	Ribosomal L18p/L5e family protein	[more]

BLAST of Carg23419-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B1Z777\|RL18_METPB	6.0e-04	31.52	50S ribosomal protein L18 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIM...	[more]
sp\|A5FZU9\|RL18_ACICJ	7.8e-04	26.36	50S ribosomal protein L18 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rpl...	[more]
sp\|C4Z2U6\|RL18_EUBE2	7.8e-04	26.89	50S ribosomal protein L18 OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48...	[more]
sp\|B1LWR0\|RL18_METRJ	7.8e-04	30.43	50S ribosomal protein L18 OS=Methylobacterium radiotolerans (strain ATCC 27329 /...	[more]

BLAST of Carg23419-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LLI4\|A0A0A0LLI4_CUCSA	5.5e-95	93.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1	[more]
tr\|A0A1S3C286\|A0A1S3C286_CUCME	2.7e-94	93.58	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1	[more]
tr\|K7KJN0\|K7KJN0_SOYBN	1.8e-82	81.82	Uncharacterized protein OS=Glycine max OX=3847 GN=100804348 PE=4 SV=1	[more]
tr\|I1KFI3\|I1KFI3_SOYBN	7.0e-82	81.28	Uncharacterized protein OS=Glycine max OX=3847 GN=100805468 PE=4 SV=1	[more]
tr\|A0A0R0JVC6\|A0A0R0JVC6_SOYBN	7.0e-82	81.28	Uncharacterized protein OS=Glycine max OX=3847 GN=100805468 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR005484	Ribosomal_L18

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg23419	Carg23419	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg23419-RA	Carg23419-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23419-RA.three_prime_UTR.1	Carg23419-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23419-RA.CDS.2	Carg23419-RA.CDS.2	CDS
Carg23419-RA.CDS.1	Carg23419-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23419-RA.five_prime_UTR.1	Carg23419-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23419-RA.exon.2	Carg23419-RA.exon.2	exon
Carg23419-RA.exon.1	Carg23419-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 66..181 e-value: 1.5E-8 score: 34.9
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..187
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 85..181 e-value: 1.4E-13 score: 53.3
None	No IPR available	PANTHER	PTHR12899:SF5	RIBOSOMAL L18P/L5E FAMILY PROTEIN	coord: 1..187
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 78..180 e-value: 9.5065E-21 score: 82.2027
None	No IPR available	SUPERFAMILY	SSF53137	Translational machinery components	coord: 66..180