Cp4.1LG11g07750 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g07750
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRNA binding protein, putative
LocationCp4.1LG11 : 6242929 .. 6248047 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCTTTCTCTCCGCGGCCGCCGTCTCCTCCTCCTCCGTCTCCACCACCCTTCAATTACTATGATCTTAATACTCCTCCTTCCAGATTCCCTTTTCCGATTCCCACTTTTTCCCACTAAAAATCCACCCTCTTCCTCTTCCCACGGTCCCTAGATCTCTTTATCTCCCCTCATCACCGACCTTCTCTTCCCCTTAGCCCTGTTCCTCGTTGGCCCATCTCATCCCCCAATTCATTTCTAGGGTTTCCCGTTCTAATTATGATCACTGTTATTGGGATTCATCATTCCTCTTCTGCCTTCTTTTCCCTTTTTCTACTTTCTCTTTATCATTCCTCTCCTACCCTTTTCTTCCCTTTCCAATCCCTTTCAATTTCCTCCTGATTTTCTCTGTAAATCCTCCCAATTCATAAGGGTTTTCCTAGGGGTTTGATTTTTCTATGTGGGTTCCTCTCTAATCCTCCTCTAATCTTCCACTTGATCGAATCTCACTTACCCTTTGTGTGTCTGTTTATATTGTATATTGGGTGTTCACTTATTTCTCTCTTCTTCCTTTGGTTCTTAAGTTTCTCCATTAATAATGGCTTATCAGCATGGTCGGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTAGTTTCTTGAACTCTCCCTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGTGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTCATAACGGATAAGAATACAGGGAGATCTAAAGGATATGGTTTCGTGAGTATTAATGGCTTTTACTTTAACGGGTTTTTGTTAACTTTGTACTTTTGTTTCTACTTTCTTAAAGTAACAGCCTTAGAACATTCGTTTTGACCATTTTTTTGTAACAGCTAGTCGAATCTAATTGCTTGCTCATTAATATCTATATTGTCCACACTTGGAATGACCTGAACGTTTGTTCCTGTTTACATGGAGGGTTTTAGGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGTAGATCCTACTCCAGTTATTGATGGCAGGCGAGCTAACTGTAATCTGGCCTCACTTGGCCGGCCTCGGCCACCTATATCTTATGGTATTGTTTGCTTATTTCGTCTTTATTGTTTAGCAAATCGTGTTGTTTGTTCATGTCATGTGTATATGTATGATCAAGAGACTTTTCCTGGTTTATACAAAGGAAATGACGGTCAGAAATTCCTTGAAACGCTCGATTGATCGGTCTTTACTTCTACACTGTTGTTTCTTACAGGACGCTTAAGACCGCCTGCAGTGTATGTTGGTGGCATGCAACCCAATAGGGGGAATTATATTGGAAATTTTGGCTATCAACAACCGGTTTCTTATGCTTATCAGCAGGGACTTGCATATCCTCCTTACAGGTGTGTCCCCGAGGTTCCTCTTTGTGCATCCAAGCGTGGCGATATATCAAATTTAATTATTTTGTTAAACCTCGATATCTTCCATTTTGCTTTATCACAACCTTTACATCTTGTAGTATGACTCTGTGGGGCTTGGTTTGCTTTAAAAAAATCGAACTTATGCTTTCTGGTTTGGTATTTCATTTTAATTACCACAACCATGCGTGTTCTTTGAATGGACCTTTAGTTTTCTTGGTTTCTTAAAATGGTTTATAGACATTACTTGCTTGGTATTCATCCTCTGCAATGCCCTCTTAACGTTAGTATGTATCTTTAAAGACACTAGAGGCATAATATCAATCACTACATGCAACATTCCTTAGGATATGCTTCTTTGTCACCTCCTAGCAACCAGGATTGATACCTGGTCAGTCATGTGGCACATTGTGATTGGTAATTTTAGGAATACCATAGAATTTATTTGAAGATATGTGCCAAGACTAATGTAATTGAGCTAGAAGAAGCATGGCTAGTATTATTGGAGAAGTTTTATTTCTTGCTTTCACTTGCATTCGTAGTTTATATGAGAAGTCAAGTTAGTAGGATTTGATCACTCTGGTCTCTAGTGAATTGGGATACCAAATACTTGTCTTCCGATATCGCAATGGACTGTGGGTTATAAAGTGATTCCGCCTGCTAAGTCTGCACCGCTTCAATTTATTCTACTATCTAGATTTCTGCTTTCATATTCTTATGTTTTAGAATATTTATAATATTTTCCCTCTTTCGTTTTTTATGCAGTTATGCTACTTATGGGCCGGAGTATGTCTACCCGCAGGTATAGCTATAGCTTTATGTAATTGTGTCTGCAATTCTGTGTTTGGAGGGTGGAAGTAGGGAAGGGCGATACGTAGGCTATCTTGAGAAGTTTCTTAAGGTTTTCGATTGTTTAACATTATATGCTTGTCGGTTTTGATTTTTTGTGTCTTGTATTCTTTGCATAGGGTGGATATAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCGGGGTCAGCGAGCCCTGCTATTTATCATTATGGACAATTAGGTCAAACAGTCCCCGGTGGTCATGGATATGGAGCAGTACATGGATACGCAATGCCAAGTCCTCAGATCGTGCAGTTTGGTGGACCTAATGTCAACCCGTTAACATCTTCTCCAATGCCTACTATTCAGGCACCCTATCCTTCAGGTATTTTGCGTCGTATGCATATACTCCGTGCTGTTATTATATGAAGATCACTCTTGATTGCAACATCGCGTAATATGAGTTTTGACTTGTCTTTTTAGGTATTTTTCTTTGAATTTGTATTTTTATTGTCATCAATTGGATCTTTTTTGTGTAATTGTGTAGTCTTTTCTGGATTCTCCTTCAGTTTGGTCCTTCGGTCTTTTTCTCGAGGCCATTTTTTTTGTTTCTTCATTTATTTTTCAGCAATGCCTTATCTTAAAAATCTAGAGGAAGTGTGTTCGTCAATTCGTGTTCAATCATTGCATTGACTTAGTTATGTGATGAACAACAGGACAAGGGTCCATGCGGGTCAATGAGGAGAATAAGTTTGTTTTACTATAGAACAAAGAAGATATAATGTATCGAGACGTCTTCGTTGTTTGATACTATTTAGGTCACATTTCTGTATGTTTTACTTGTACCGTGTTCTTGATCATCTGAAGAGGAATAAAGGAAAATGAAAATAATATGCTTTTGCATGTTCGATATGCTTGATTAGGAAAATGTGTTTGTTTATTTCATCAGGGATCCCAGCACCTGTTGCAGCACAACCACAGTTCATTGTCCATTCTCCTTCTCAGTTTGTACAAGGTAGCAGTTCTGACCAGACATCTGGGTGAGGAGTTGATCAGGTAAACTCCAAATTTTGCTGTTAATATTTGAAATTGCCCTTCCTATCTTTATCACCAACAGTCTCTTACGGCCTACAATTTGACTACGTTCATAGGTATCAATAGATTGCAGCAGGACTTAGAGCAGCGGAACTGCTACTTGTGTGGCAGGCTTCGGATCTAGCCTTGCAAATAATTTATCATGCATTCTAGAGGTAGTCTTATGCTCGCTGCATCGGTTTTTCAACAATTTTCATATGTGGTCAGGATAACAACTATTTGAAAAGCATGTGGTAAAATCTTTGCTGTCATATCTTATTTCATATAGGATTATAGCAGAATGGTATGGTGAGTTCTGGAATATGAGCCCATGACATCGGGAACAACTAATCTGTGGGGGGTTTAAGGTTGTTAGAATTGATGATGTGTTTGGATACTCATAGGGGAACGTGTGTGTAGGATGTCTAAACCGTGTAAACTGCCATGAATTGGCCTAATGGTCGATAAAGATTATGTAAATAATAAAGGGTTCGGAGGGAATAGGTTCAAGACATTGGTGGCAACTTCGCATATAAATATCTTTGACTACTAAATGTAATAGGGTCGGGCAGTTGTCTCGTGAGAATAGTCTTAGGTGCATCTTTCATTTCCACTTGCATTCGATTTTAAAAGTTCTCTTACTTAACTGCAGTTCACAGTCATGCTCACCAGAGAAGTCGGATGGTGTCGAGTCGCTCCAATTGGTGGAGAAAGCATATGGAAGAGGTGCAGGGCTGCTCTTTCTCTAATACCTTTGTTCTTCCCCAGTGTTTATAAACTCTTATACACTGCCAATGCTCTGGAGAGCGGCAGGTCGTCATGGATTAATTGATGGGTGCTCAAATCGGTTTTAAGCATCCATTTAGGAATAAAAACGTGTAAAAAAGAAGTCGAAAATAGAATCAACATATGATTCTTTTATAGTGAACTCCCAGCATTTTGGGTGTTGTATAGGAAGTGTGTCTCTGGTGGCTTTATGTGGTCATGGGTCTATCATCATCATCATCATCATCTTGGTACTCATATATGATATCCTTTAAGTTCATGTGCATATTAGTTGGGATTTCTTTTGAGACCTGACTCACTGACTGACTTCATAACAACGAAGCAGCTTCAGGTTCTATCAGGAAAAGATCAAATTGCTGATTTTTCGTTTTAATATCCATCCATCCCGCACTGCCATATGTCGGATTGGGATTGGCTGCATCTGCCTGCATCAGAGGATGTAAAGTTTCTAGTTCTTCTTCCTTCACAATGTTTAGAACATTCTGTTTATTCATTGTGTTTGTTGTGGGATCATCATTTTTTTCTTTGTTCTTTTTCCCCTAAAGGGGATTTGTCGATGGATTCGAAACATTGGATGGAAGCGTTAGGATTTATCGAACCGTTATTGTGATATGATGCCATGTTAGGTCCATAGAAATGACTTCTTTGGTGCAATGTTTTGGCATTGCTCTTGGCTTTTCATGGCGATTCGTTCTTTAATCATTCTTTTTCGTCTGTGATTCGTTAGTCTGTTCTTCTTAGCACTAAATGATGAGTTTTTTGAGCTGATTTTACTATGAATTGATGTTTTTAGGCTTTGTTTCTAAGTTACTTCTTTGTGAATTTTTGTTGAGTTTCTGAAGTGTTATCGACATTATTATATTGTCGTTGATTATTATGATATCGATACTCTTTAAGGGGCCGTTTGGATGAGGAACGAAGAACGAGTAACGAGTAACAATGATCTATCTCTTGTTTGGAACAATTTTATTTACCTCCAAAA

mRNA sequence

CCCCTTTCTCTCCGCGGCCGCCGTCTCCTCCTCCTCCGTCTCCACCACCCTTCAATTACTATGATCTTAATACTCCTCCTTCCAGATTCCCTTTTCCGATTCCCACTTTTTCCCACTAAAAATCCACCCTCTTCCTCTTCCCACGGTCCCTAGATCTCTTTATCTCCCCTCATCACCGACCTTCTCTTCCCCTTAGCCCTGTTCCTCGTTGGCCCATCTCATCCCCCAATTCATTTCTAGGGTTTCCCGTTCTAATTATGATCACTGTTATTGGGATTCATCATTCCTCTTCTGCCTTCTTTTCCCTTTTTCTACTTTCTCTTTATCATTCCTCTCCTACCCTTTTCTTCCCTTTCCAATCCCTTTCAATTTCCTCCTGATTTTCTCTGTAAATCCTCCCAATTCATAAGGGTTTTCCTAGGGGTTTGATTTTTCTATGTGGGTTCCTCTCTAATCCTCCTCTAATCTTCCACTTGATCGAATCTCACTTACCCTTTGTGTGTCTGTTTATATTGTATATTGGGTGTTCACTTATTTCTCTCTTCTTCCTTTGGTTCTTAAGTTTCTCCATTAATAATGGCTTATCAGCATGGTCGGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTAGTTTCTTGAACTCTCCCTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGTGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTCATAACGGATAAGAATACAGGGAGATCTAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGTAGATCCTACTCCAGTTATTGATGGCAGGCGAGCTAACTGTAATCTGGCCTCACTTGGCCGGCCTCGGCCACCTATATCTTATGGACGCTTAAGACCGCCTGCAGTGTATGTTGGTGGCATGCAACCCAATAGGGGGAATTATATTGGAAATTTTGGCTATCAACAACCGGTTTCTTATGCTTATCAGCAGGGACTTGCATATCCTCCTTACAGTTATGCTACTTATGGGCCGGAGTATGTCTACCCGCAGGGTGGATATAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCGGGGTCAGCGAGCCCTGCTATTTATCATTATGGACAATTAGGTCAAACAGTCCCCGGTGGTCATGGATATGGAGCAGTACATGGATACGCAATGCCAAGTCCTCAGATCGTGCAGTTTGGTGGACCTAATGTCAACCCGTTAACATCTTCTCCAATGCCTACTATTCAGGCACCCTATCCTTCAGGGATCCCAGCACCTGTTGCAGCACAACCACAGTTCATTGTCCATTCTCCTTCTCAGTTTGTACAAGGTAGCAGTTCTGACCAGACATCTGGGTGAGGAGTTGATCAGGTATCAATAGATTGCAGCAGGACTTAGAGCAGCGGAACTGCTACTTGTGTGGCAGGCTTCGGATCTAGCCTTGCAAATAATTTATCATGCATTCTAGAGTTCACAGTCATGCTCACCAGAGAAGTCGGATGGTGTCGAGTCGCTCCAATTGGTGGAGAAAGCATATGGAAGAGCTTCAGGTTCTATCAGGAAAAGATCAAATTGCTGATTTTTCGTTTTAATATCCATCCATCCCGCACTGCCATATGTCGGATTGGGATTGGCTGCATCTGCCTGCATCAGAGGATGTAAAGTTTCTAGTTCTTCTTCCTTCACAATGTTTAGAACATTCTGTTTATTCATTGTGTTTGTTGTGGGATCATCATTTTTTTCTTTGTTCTTTTTCCCCTAAAGGGGATTTGTCGATGGATTCGAAACATTGGATGGAAGCGTTAGGATTTATCGAACCGTTATTGTGATATGATGCCATGTTAGGTCCATAGAAATGACTTCTTTGGTGCAATGTTTTGGCATTGCTCTTGGCTTTTCATGGCGATTCGTTCTTTAATCATTCTTTTTCGTCTGTGATTCGTTAGTCTGTTCTTCTTAGCACTAAATGATGAGTTTTTTGAGCTGATTTTACTATGAATTGATGTTTTTAGGCTTTGTTTCTAAGTTACTTCTTTGTGAATTTTTGTTGAGTTTCTGAAGTGTTATCGACATTATTATATTGTCGTTGATTATTATGATATCGATACTCTTTAAGGGGCCGTTTGGATGAGGAACGAAGAACGAGTAACGAGTAACAATGATCTATCTCTTGTTTGGAACAATTTTATTTACCTCCAAAA

Coding sequence (CDS)

ATGGCTTATCAGCATGGTCGGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTAGTTTCTTGAACTCTCCCTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGTGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTCATAACGGATAAGAATACAGGGAGATCTAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGTAGATCCTACTCCAGTTATTGATGGCAGGCGAGCTAACTGTAATCTGGCCTCACTTGGCCGGCCTCGGCCACCTATATCTTATGGACGCTTAAGACCGCCTGCAGTGTATGTTGGTGGCATGCAACCCAATAGGGGGAATTATATTGGAAATTTTGGCTATCAACAACCGGTTTCTTATGCTTATCAGCAGGGACTTGCATATCCTCCTTACAGTTATGCTACTTATGGGCCGGAGTATGTCTACCCGCAGGGTGGATATAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCGGGGTCAGCGAGCCCTGCTATTTATCATTATGGACAATTAGGTCAAACAGTCCCCGGTGGTCATGGATATGGAGCAGTACATGGATACGCAATGCCAAGTCCTCAGATCGTGCAGTTTGGTGGACCTAATGTCAACCCGTTAACATCTTCTCCAATGCCTACTATTCAGGCACCCTATCCTTCAGGGATCCCAGCACCTGTTGCAGCACAACCACAGTTCATTGTCCATTCTCCTTCTCAGTTTGTACAAGGTAGCAGTTCTGACCAGACATCTGGGTGA

Protein sequence

MAYQHGRGPSSISGSSSSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRPPISYGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYSYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG
Homology
[Close]
BLAST of Cp4.1LG11g07750 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-29
Identity = 109/286 (38.11%), Postives = 137/286 (47.90%), Query Frame = 1 

Query: 17  SSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           ++S+ +N  FGDT  TKVFVGGLAW+T  E M  +F ++G+ILEAV+I+DK T RSKGYG
Sbjct: 2   TTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYG 61

Query: 77  FVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRPPISYGRLRPPAVYVGGMQ-PNR 136
           FVTF+D ++A RAC D TP+I+GRRANCNLASLG        GRLR         Q P  
Sbjct: 62  FVTFKDAKAATRACEDSTPIINGRRANCNLASLG--------GRLRKSPTMTSPQQGPKN 121

Query: 137 GN-----YIGNFG-YQQPVSYAYQQ-----GLAYPPYSYATYGPEYVYPQGGYNPFVGQQ 196
           GN     ++GN   +  P  +  QQ       A P Y Y +    YV P   +N  VG  
Sbjct: 122 GNRATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGYPS---AYVAPNMTFNQKVGY- 181

Query: 197 YLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIV---QFGGPNVNPLTS 256
                 V G+     Y  G   Q  P           + P PQ      +GG  V    +
Sbjct: 182 ------VGGT-----YMNGYYAQMQP--------QPQSQPQPQYYHHHMYGGGRVMVGAA 241

Query: 257 SPMPTIQAPYP------SGIPAPVAAQPQFIVHSPSQFVQGSSSDQ 282
           SPM      YP       G P P  ++P      P     G  S Q
Sbjct: 242 SPMVPFYTVYPYHQSQAIGFPQPSFSKPLSFSTPPISGTVGGESIQ 256

[Close]
BLAST of Cp4.1LG11g07750 vs. Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.8e-28
Identity = 81/201 (40.30%), Postives = 101/201 (50.25%), Query Frame = 1 

Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACVDPTPVIDGRRANCNLASLGRPRPPISYGRLRPPAVYVGGMQPNRGNYIGNFGYQQP 147
           RAC DP P+IDGR+AN NLA LG      +  R+  P    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQIHPALIQRPFGI--P 126

Query: 148 VSYAYQQGLAYPPYSYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQ 207
             Y Y Q    P        P        Y  +    Y Q      +A+   Y Y     
Sbjct: 127 AHYVYPQAYVQPGVVIPHVQPTAATSTSPYIDYTSAAYAQYSAAAAAAAYDQYPYA---- 186

Query: 208 TVPGGHGY--GAVHGYAMPSP 227
             P   GY   A +GYA+P P
Sbjct: 187 ASPAATGYVTAAGYGYAVPQP 195

[Close]
BLAST of Cp4.1LG11g07750 vs. Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-27
Identity = 85/212 (40.09%), Postives = 104/212 (49.06%), Query Frame = 1 

Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACVDPTPVIDGRRANCNLASLGRPRPPISYGRLRPPAVYVGGMQPNRGNYIGNFGYQQP 147
           RAC DP P+IDGR+AN NLA LG      +  R+  P    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQLHPALIQRPFGI--P 126

Query: 148 VSYAYQQGLAYP----PYSYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYG 207
             Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A+ A   Y 
Sbjct: 127 AHYVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAAYD 186

Query: 208 QLGQTV-PGGHGYGAVHGYAMPSPQIVQFGGP 235
           Q      P   GY    GY     Q +    P
Sbjct: 187 QYPYAASPAAAGYVTAGGYGYAVQQPITAAAP 206

[Close]
BLAST of Cp4.1LG11g07750 vs. Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.6e-27
Identity = 83/206 (40.29%), Postives = 105/206 (50.97%), Query Frame = 1 

Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 88  RACVDPTPVIDGRRANCNLASLG-RPR---PPISYGRLRPPAVYVGGMQPNRGNYIGNFG 147
           RAC DP P+IDGR+AN NLA LG +PR   P  ++G    P ++   +Q           
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFG---VPQIHPAFIQR---------P 126

Query: 148 YQQPVSYAYQQGLAYPPYSYATYGPEYVYPQGG--YNPFVGQQYLQIYGVPGSASPAIY- 207
           Y  P  Y Y Q    P        P          Y  + G  Y Q      +A+ A Y 
Sbjct: 127 YGIPTHYVYPQAFMQPSVVIPHIQPTATSATASSPYIDYTGAAYAQYASAATAAAAAAYE 186

Query: 208 HYGQLGQTVPGGHGYGAVHGYAMPSP 227
            Y         G+   A +GYAM  P
Sbjct: 187 QYPYAASPAATGYVAAAGYGYAMQQP 200

[Close]
BLAST of Cp4.1LG11g07750 vs. Swiss-Prot
Match: RBM24_MOUSE (RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.6e-27
Identity = 84/212 (39.62%), Postives = 105/212 (49.53%), Query Frame = 1 

Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACVDPTPVIDGRRANCNLASLGRPRPPISYGRLRPPAVYVGGMQPNRGNYIGNFGYQQP 147
           RAC DP P+IDGR+AN NLA LG      +  R+  P    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQLHPALIQRPFGI--P 126

Query: 148 VSYAYQQGLAYP----PYSYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYG 207
             Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A+ A   Y 
Sbjct: 127 AHYVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAAYD 186

Query: 208 QLGQTV-PGGHGYGAVHGYAMPSPQIVQFGGP 235
           Q      P   GY    GY+    Q +    P
Sbjct: 187 QYPYAASPAAAGYVTTGGYSYAVQQPITAAAP 206

[Close]
BLAST of Cp4.1LG11g07750 vs. TrEMBL
Match: A0A0A0KHA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401470 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 2.4e-149
Identity = 262/277 (94.58%), Postives = 266/277 (96.03%), Query Frame = 1 

Query: 1   MAYQHGRGPSSISGSSSSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSS FLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRPPISYG- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTP+IDGRRANCNLASLGRPRPP+SYG 
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 -RLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYSYATYGPEYVYPQGGYN 180
            RLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPY YATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNP 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQ 276
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQ
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 277

[Close]
BLAST of Cp4.1LG11g07750 vs. TrEMBL
Match: A0A061FMY5_THECC (RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 OS=Theobroma cacao GN=TCM_034819 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 3.5e-124
Identity = 220/284 (77.46%), Postives = 243/284 (85.56%), Query Frame = 1 

Query: 1   MAYQHGRGPSSISGSSSSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQ   GPSS S SSS   ++NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQPIPGPSSGSSSSSGFQYINSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPE+ARRAC DPTP+IDGRRANCNLASLGRPRPP+ YGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPVPYGR 120

Query: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYSYATYGPEYVYPQGGYNPF 180
           LRP + Y+GG+Q  RG Y+G+FGYQ P+SY+YQQGL YP Y Y TYG EY+YPQG YNP+
Sbjct: 121 LRPASPYIGGVQATRGAYVGSFGYQPPLSYSYQQGLMYPSYGYPTYGHEYLYPQGVYNPY 180

Query: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240
             QQYLQIYGVPGSA  A+Y YGQLGQTVP GHGY AV GYA+PS QIVQFGGP+ N +T
Sbjct: 181 AAQQYLQIYGVPGSAGTALYPYGQLGQTVPSGHGYSAVQGYALPSHQIVQFGGPSANAIT 240

Query: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 285
           +S MPTIQ PYP G+  PV AQPQFIV +PSQF+QGS SDQT+G
Sbjct: 241 TSAMPTIQTPYPGGMATPVPAQPQFIVTTPSQFMQGSGSDQTTG 284

[Close]
BLAST of Cp4.1LG11g07750 vs. TrEMBL
Match: A0A067KKX2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08033 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.1e-122
Identity = 220/285 (77.19%), Postives = 243/285 (85.26%), Query Frame = 1 

Query: 1   MAYQHGRGPSSISGSSSSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQ   GPSS S SSS   +LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQPIPGPSSGSSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFR+PESA+RAC DPTP+IDGRRANCNLASLGRPRPP+ YGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFREPESAKRACADPTPIIDGRRANCNLASLGRPRPPLPYGR 120

Query: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYSYATYGPEYVYPQGGYNPF 180
           LRP   Y+  +Q  RG Y+G+FGYQQP+SY YQQGL Y PY YA YGPEYVYPQG YNP+
Sbjct: 121 LRPATPYIASVQNPRGTYVGSFGYQQPLSYNYQQGLMYHPYGYAAYGPEYVYPQGVYNPY 180

Query: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240
            GQ YLQIYGVPG+ + A+Y YGQLGQT+PGGHGY  V GYAMP  QIVQFGGP+VNP+T
Sbjct: 181 AGQPYLQIYGVPGAVNTAMYPYGQLGQTLPGGHGYSTVQGYAMPGHQIVQFGGPSVNPIT 240

Query: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPS-QFVQGSSSDQTSG 285
           +SPM TIQ PYP+GI APV AQP FIV +PS Q++QGS SDQT+G
Sbjct: 241 TSPMATIQTPYPTGIAAPVPAQPPFIVPAPSPQYMQGSGSDQTAG 285

[Close]
BLAST of Cp4.1LG11g07750 vs. TrEMBL
Match: W9R6Z7_9ROSA (RNA-binding protein 24 OS=Morus notabilis GN=L484_024805 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 5.7e-122
Identity = 219/287 (76.31%), Postives = 244/287 (85.02%), Query Frame = 1 

Query: 1   MAYQHGRGPSSISGSSSSSS---FLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGE 60
           MAY H + P   SGSSSSS    FLNSPFGDTTYTKVFVGGLAWETQS+TMRRYFEQFGE
Sbjct: 1   MAYHHQQVPGPSSGSSSSSGYHQFLNSPFGDTTYTKVFVGGLAWETQSDTMRRYFEQFGE 60

Query: 61  ILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRPPIS 120
           ILEAVVITDKNTGRSKGYGFVTFR+PE+ARRAC DP PVIDGRRANCNLASLGRPRPP+ 
Sbjct: 61  ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPAPVIDGRRANCNLASLGRPRPPMP 120

Query: 121 YGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYSYATYGPEYVYPQGGY 180
           YGR RP   YVG +Q  RG Y+GNFGYQQP+SY Y QGL YP Y Y TYGP+YVYPQGGY
Sbjct: 121 YGRPRPATPYVGNVQSARGTYVGNFGYQQPLSYGY-QGLMYPQYGYTTYGPDYVYPQGGY 180

Query: 181 NPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVN 240
           NP+ GQQYLQIYG+PG+ + A+Y YGQ+ QT+P G GY A+HGYAMP  QIVQFGGP+VN
Sbjct: 181 NPYTGQQYLQIYGLPGTVNTAMYPYGQVSQTLPSGQGYTAMHGYAMPGHQIVQFGGPSVN 240

Query: 241 PLTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 285
            LT+SPMPTIQ+PYP+G+ APV AQPQFIV +PSQ+VQG  SDQT+G
Sbjct: 241 ALTTSPMPTIQSPYPTGMAAPVMAQPQFIVPAPSQYVQGGGSDQTTG 286

[Close]
BLAST of Cp4.1LG11g07750 vs. TrEMBL
Match: F6I6W0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00660 PE=4 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 3.7e-121
Identity = 221/286 (77.27%), Postives = 242/286 (84.62%), Query Frame = 1 

Query: 1   MAYQHGRGPSSISGSSSSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQ   GPSS S SSS   FLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQPIPGPSSGSSSSSGFQFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC+DP P+IDGRRANCNLASLGRPRP +SYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACLDPAPIIDGRRANCNLASLGRPRPSMSYGR 120

Query: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYSYATYGPEYVYPQGGYNPF 180
           LRP   Y+G +   RG+Y+GNFGYQQPVSY+YQQG  YP Y YA YGPEYVYPQG YNP+
Sbjct: 121 LRPVTPYLGSVPATRGSYVGNFGYQQPVSYSYQQGFMYPSYGYAAYGPEYVYPQGVYNPY 180

Query: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240
            GQQYLQIYGVPG+ + AIY YGQLGQT+P  HGY  V GYAMP  Q +QFGG +VN ++
Sbjct: 181 PGQQYLQIYGVPGTVNTAIYPYGQLGQTLPSSHGYTTVQGYAMPGHQFMQFGGSSVNAIS 240

Query: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIV--HSPSQFVQGSSSDQTSG 285
           +SP+PTIQAPYP+GI APV AQPQFIV  HSP QF+QGS  DQT+G
Sbjct: 241 TSPIPTIQAPYPTGIAAPVPAQPQFIVPAHSP-QFIQGSGPDQTTG 285

[Close]
BLAST of Cp4.1LG11g07750 vs. TAIR10
Match: AT1G76460.1 (AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 372.9 bits (956), Expect = 1.8e-103
Identity = 188/292 (64.38%), Postives = 224/292 (76.71%), Query Frame = 1 

Query: 1   MAYQHGRGPSSISGSSSSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQ   G        S   +LNSPFGDTT+TKVFVGGLAWETQSET+R++FEQ+GEILE
Sbjct: 1   MAYQPVPG--------SGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRPPISY-- 120
           AVVI DKNTGRSKGYGFVTFRDPE+ARRAC DPTP+IDGRRANCNLASLGRPRPP+ Y  
Sbjct: 61  AVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAV 120

Query: 121 -----GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYSYATYGPEYVY- 180
                GRLRP + Y+G +Q  RG+ IGN+ YQQP+ Y YQQG+ Y PY    YGPEY+Y 
Sbjct: 121 IPNMPGRLRPASPYIGNVQGPRGSLIGNYPYQQPLPYNYQQGVVY-PYGVTAYGPEYMYS 180

Query: 181 -PQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQF 240
             QG Y+P++GQQYLQ+YGVPG+ +  +Y YGQL QT+P GHGY AV GY++P   I+Q 
Sbjct: 181 QSQGLYSPYMGQQYLQVYGVPGAVNSPVYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQL 240

Query: 241 GGPNVNPLTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTS 284
           GGP V+ +T+S MP +QAPYPSGIP P   Q   IVHSP QF+Q ++SDQT+
Sbjct: 241 GGPTVSTMTTSSMPALQAPYPSGIPGPAPVQSHIIVHSP-QFMQSTASDQTT 282

[Close]
BLAST of Cp4.1LG11g07750 vs. TAIR10
Match: AT1G20880.1 (AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 327.8 bits (839), Expect = 6.7e-90
Identity = 170/278 (61.15%), Postives = 206/278 (74.10%), Query Frame = 1 

Query: 16  SSSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGY 75
           SS   +LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRSKGY
Sbjct: 8   SSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGY 67

Query: 76  GFVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRPPISY-------GRLRPPAVYV 135
           GFVTFRDPE+ARRACVDPTP+IDGRRANCNLASLGR RPP+ Y       GR+RPP+ YV
Sbjct: 68  GFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYV 127

Query: 136 GGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYSYATYGPEYVY--PQGGYNPFVGQQYL 195
           G +Q  RG + G+  Y QP +Y YQQG+ Y PY    YGP+Y+Y   QG Y P++GQQYL
Sbjct: 128 GSVQSPRGLHFGSHPYHQPPTYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYGPYMGQQYL 187

Query: 196 QIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPT 255
           Q+YGVPG+ +   Y YGQL  T+PG HGY A  GY+ P   ++Q G        +SPM  
Sbjct: 188 QVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLG-------ATSPMSA 247

Query: 256 IQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 285
           IQ+PYPS  P+    Q + IV +P Q++Q S SDQT+G
Sbjct: 248 IQSPYPS--PSAPTHQ-RVIVQTPPQYIQSSGSDQTTG 274

[Close]
BLAST of Cp4.1LG11g07750 vs. TAIR10
Match: AT1G22330.1 (AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 183.0 bits (463), Expect = 2.7e-46
Identity = 129/283 (45.58%), Postives = 162/283 (57.24%), Query Frame = 1 

Query: 17  SSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           S++S+  SPFGDTT+TKVFVGGLAWET ++ MRRYF+QFGEILEAV+ITDK TG+SKGYG
Sbjct: 2   SNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61

Query: 77  FVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRP--PISYGRLRPPAVYVGGMQPN 136
           FVTFRD +SA RA  DP PVIDGR+ANCN+AS GRPRP  P   G+   P+ Y GG Q +
Sbjct: 62  FVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQSS 121

Query: 137 RGNYIGNFGYQQPVSYAYQQGLAYPPYSYATYGPEYVYPQGGYNPFVGQ-QYL--QIYGV 196
                   G   PV  A    L YP Y Y TY  EY Y Q  YN  + Q QY   Q+YG 
Sbjct: 122 ------YTGMAAPVQQAAAAQLMYPSYGY-TYNSEYGYHQALYNAQLQQAQYYQQQMYGG 181

Query: 197 PGSASPAI-------YHYGQLGQTVPG-GHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSP 256
            G+ SP+        Y+Y Q     P   H     + +     Q  Q   P+ +     P
Sbjct: 182 GGATSPSSSNIMPSPYYYLQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRLPSASSYLIYP 241

Query: 257 MPTIQAPYPSGIP---APVAAQPQFIVHSPSQF-VQGSSSDQT 283
              ++AP PS +P    P+++  +   H+P Q   +G   D T
Sbjct: 242 -SNVEAPTPSNVPTSQGPLSSSTE--SHAPQQVSEEGGEFDPT 274

[Close]
BLAST of Cp4.1LG11g07750 vs. TAIR10
Match: AT1G78260.1 (AT1G78260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 181.4 bits (459), Expect = 7.7e-46
Identity = 112/220 (50.91%), Postives = 138/220 (62.73%), Query Frame = 1 

Query: 17  SSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           S +S+  SPFGDTTYTKVFVGGLAWET ++ MRRYFEQFGEILEAV+ITDKNTG+SKGYG
Sbjct: 2   SQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG 61

Query: 77  FVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPR--PPISYGRLRPPAVYVGGMQPN 136
           FVTFR+ +SA RA  DP PVIDGR+ANCN+AS GRPR  PP   G+   P+ Y  G    
Sbjct: 62  FVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---G 121

Query: 137 RGNYIGNFGYQQPVSYAYQQGLAYPPYSYATYGP-EYVYPQGGYNPFVG-----QQYLQI 196
              Y    G   P+  A    L YP Y Y TY P ++ Y Q  YN  +      QQ  Q+
Sbjct: 122 PSTYT---GMAAPLPPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQL 181

Query: 197 YGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQI 229
           YG  G+ SP+       G T+     Y   +GY++ +P++
Sbjct: 182 YG-GGATSPS-----SSGATIMPSPYY---YGYSLQAPRV 205

[Close]
BLAST of Cp4.1LG11g07750 vs. TAIR10
Match: AT2G46780.1 (AT2G46780.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 169.5 bits (428), Expect = 3.0e-42
Identity = 123/288 (42.71%), Postives = 154/288 (53.47%), Query Frame = 1 

Query: 23  NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRD 82
           N+   DT  TK+FVGGLAWETQ +TMRRYFEQFGEI+EAVVITDKNTGRSKGYGFVTF++
Sbjct: 13  NNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKE 72

Query: 83  PESARRACVDPTPVIDGRRANCNLASLG--RPRPPIS----YGRLRPPAVYVGGMQPN-- 142
            E+A RAC +  PVIDGRRANCNLA LG  +PRPP S     GR R P   VG + P+  
Sbjct: 73  AEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRFRSPGSGVGLVAPSPQ 132

Query: 143 -RGNYIGN-FGYQQPVSYAYQQGLAYPPYSYATYGPEYVYPQGGYNP--FVGQQYLQIYG 202
            RG+   + F +QQ   +  Q    Y  Y ++ Y  E +YP   YN   + GQQ+    G
Sbjct: 133 FRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPMNYYNHHLYGGQQFSPYMG 192

Query: 203 VPGSASPAIYH--------------YGQLGQTVPGGHGYGAVHGY-AMPSPQIVQFGGPN 262
            P + S  ++H                Q    V   H  G    Y A P+P ++Q+    
Sbjct: 193 HPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQHHQGFSFQYTAPPAPPLLQYPYLP 252

Query: 263 VNPLTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTS 284
             P  SS      +  P   P P+ + P  +  S       SSS  TS
Sbjct: 253 HQPHFSS-QQQFSSQQP---PPPILSLPTSLALSLPSSSSPSSSTSTS 296

[Close]
BLAST of Cp4.1LG11g07750 vs. NCBI nr
Match: gi|449458055|ref|XP_004146763.1| (PREDICTED: RNA-binding protein 24-A [Cucumis sativus])

HSP 1 Score: 550.4 bits (1417), Expect = 1.8e-153
Identity = 270/286 (94.41%), Postives = 274/286 (95.80%), Query Frame = 1 

Query: 1   MAYQHGRGPSSISGSSSSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSS FLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRPPISYG- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTP+IDGRRANCNLASLGRPRPP+SYG 
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 -RLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYSYATYGPEYVYPQGGYN 180
            RLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPY YATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNP 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 285
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGS SDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]
BLAST of Cp4.1LG11g07750 vs. NCBI nr
Match: gi|659129704|ref|XP_008464801.1| (PREDICTED: RNA-binding protein 24-A [Cucumis melo])

HSP 1 Score: 549.7 bits (1415), Expect = 3.1e-153
Identity = 270/286 (94.41%), Postives = 274/286 (95.80%), Query Frame = 1 

Query: 1   MAYQHGRGPSSISGSSSSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSS FLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRPPISYG- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTP+IDGRRANCNLASLGRPRPPIS+G 
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 -RLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYSYATYGPEYVYPQGGYN 180
            RLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPY YATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNP 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 285
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGS SDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]
BLAST of Cp4.1LG11g07750 vs. NCBI nr
Match: gi|700192573|gb|KGN47777.1| (hypothetical protein Csa_6G401470 [Cucumis sativus])

HSP 1 Score: 536.2 bits (1380), Expect = 3.5e-149
Identity = 262/277 (94.58%), Postives = 266/277 (96.03%), Query Frame = 1 

Query: 1   MAYQHGRGPSSISGSSSSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHG GPSSISGSSSSS FLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRPPISYG- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTP+IDGRRANCNLASLGRPRPP+SYG 
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 -RLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYSYATYGPEYVYPQGGYN 180
            RLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPY YATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNP 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQ 276
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQ
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 277

[Close]
BLAST of Cp4.1LG11g07750 vs. NCBI nr
Match: gi|590597624|ref|XP_007018664.1| (RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 452.6 bits (1163), Expect = 5.1e-124
Identity = 220/284 (77.46%), Postives = 243/284 (85.56%), Query Frame = 1 

Query: 1   MAYQHGRGPSSISGSSSSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQ   GPSS S SSS   ++NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQPIPGPSSGSSSSSGFQYINSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPE+ARRAC DPTP+IDGRRANCNLASLGRPRPP+ YGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPVPYGR 120

Query: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYSYATYGPEYVYPQGGYNPF 180
           LRP + Y+GG+Q  RG Y+G+FGYQ P+SY+YQQGL YP Y Y TYG EY+YPQG YNP+
Sbjct: 121 LRPASPYIGGVQATRGAYVGSFGYQPPLSYSYQQGLMYPSYGYPTYGHEYLYPQGVYNPY 180

Query: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240
             QQYLQIYGVPGSA  A+Y YGQLGQTVP GHGY AV GYA+PS QIVQFGGP+ N +T
Sbjct: 181 AAQQYLQIYGVPGSAGTALYPYGQLGQTVPSGHGYSAVQGYALPSHQIVQFGGPSANAIT 240

Query: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 285
           +S MPTIQ PYP G+  PV AQPQFIV +PSQF+QGS SDQT+G
Sbjct: 241 TSAMPTIQTPYPGGMATPVPAQPQFIVTTPSQFMQGSGSDQTTG 284

[Close]
BLAST of Cp4.1LG11g07750 vs. NCBI nr
Match: gi|802604341|ref|XP_012073568.1| (PREDICTED: RNA-binding protein 24-A [Jatropha curcas])

HSP 1 Score: 447.6 bits (1150), Expect = 1.6e-122
Identity = 220/285 (77.19%), Postives = 243/285 (85.26%), Query Frame = 1 

Query: 1   MAYQHGRGPSSISGSSSSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQ   GPSS S SSS   +LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQPIPGPSSGSSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFR+PESA+RAC DPTP+IDGRRANCNLASLGRPRPP+ YGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFREPESAKRACADPTPIIDGRRANCNLASLGRPRPPLPYGR 120

Query: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYSYATYGPEYVYPQGGYNPF 180
           LRP   Y+  +Q  RG Y+G+FGYQQP+SY YQQGL Y PY YA YGPEYVYPQG YNP+
Sbjct: 121 LRPATPYIASVQNPRGTYVGSFGYQQPLSYNYQQGLMYHPYGYAAYGPEYVYPQGVYNPY 180

Query: 181 VGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLT 240
            GQ YLQIYGVPG+ + A+Y YGQLGQT+PGGHGY  V GYAMP  QIVQFGGP+VNP+T
Sbjct: 181 AGQPYLQIYGVPGAVNTAMYPYGQLGQTLPGGHGYSTVQGYAMPGHQIVQFGGPSVNPIT 240

Query: 241 SSPMPTIQAPYPSGIPAPVAAQPQFIVHSPS-QFVQGSSSDQTSG 285
           +SPM TIQ PYP+GI APV AQP FIV +PS Q++QGS SDQT+G
Sbjct: 241 TSPMATIQTPYPTGIAAPVPAQPPFIVPAPSPQYMQGSGSDQTAG 285

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g07750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ARP1_ARATH1.6e-2938.11Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1[more]
RB24A_XENLA6.8e-2840.30RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1[more]
RBM24_HUMAN1.5e-2740.09RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1[more]
RBM24_DANRE2.6e-2740.29RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1[more]
RBM24_MOUSE2.6e-2739.62RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1[more]
BLAST of Cp4.1LG11g07750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHA9_CUCSA2.4e-14994.58Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401470 PE=4 SV=1[more]
A0A061FMY5_THECC3.5e-12477.46RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 OS=Theobroma cacao GN=... [more]
A0A067KKX2_JATCU1.1e-12277.19Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08033 PE=4 SV=1[more]
W9R6Z7_9ROSA5.7e-12276.31RNA-binding protein 24 OS=Morus notabilis GN=L484_024805 PE=4 SV=1[more]
F6I6W0_VITVI3.7e-12177.27Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00660 PE=4 SV=... [more]
BLAST of Cp4.1LG11g07750 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G76460.11.8e-10364.38 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G20880.16.7e-9061.15 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G22330.12.7e-4645.58 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G78260.17.7e-4650.91 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G46780.13.0e-4242.71 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Cp4.1LG11g07750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458055|ref|XP_004146763.1|1.8e-15394.41PREDICTED: RNA-binding protein 24-A [Cucumis sativus][more]
gi|659129704|ref|XP_008464801.1|3.1e-15394.41PREDICTED: RNA-binding protein 24-A [Cucumis melo][more]
gi|700192573|gb|KGN47777.1|3.5e-14994.58hypothetical protein Csa_6G401470 [Cucumis sativus][more]
gi|590597624|ref|XP_007018664.1|5.1e-12477.46RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 [Theobroma cacao][more]
gi|802604341|ref|XP_012073568.1|1.6e-12277.19PREDICTED: RNA-binding protein 24-A [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g07750.1Cp4.1LG11g07750.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 34..89
score: 3.3
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 33..105
score: 6.9
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 32..109
score: 17
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 20..114
score: 1.2
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 31..145
score: 4.57
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 28..113
score: 2.5E-42coord: 224..253
score: 2.5
NoneNo IPR availablePANTHERPTHR24012:SF421SUBFAMILY NOT NAMEDcoord: 28..113
score: 2.5E-42coord: 224..253
score: 2.5