Cla021912 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021912
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	RNA-binding protein 68390-68829 (AHRD V1 -- Q9C805_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1
Location	Chr8 : 18519562 .. 18522629 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTATCAGCATGGCCCGGGTCCTAGTTCGATATCTGGATCAAGTTCGAGTTCTGGTTTCTTGAACTCTCCCTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGCGAGACTATGAGGCGATACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGAGTATTAATGGTTTTTACTTTAATGGGTTTTTGTTAACTTTATACTTTTATTTCTACTTTCTAAAAGTAATAGCCTAAGAACATTCGTTTTTACACTTTTTTTTTTCCTTTCTAGCAAGCTAGTCGTATCTAATTGTTTGATCATTAATATCTATATTGTTGACATTTGAATGACCTGAACGTTTGTTCCTGTTTACATGGAGGGTTTTAGGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTGGCTTCACTTGGCCGACCTCGTCCACCTATATCTTATGGTATTATTTGCTTATTTGGTCTTTTATTGCTTAGCAAATTGCATTGTTAGTTCCTGTCATGTGTATTTGTATGATCGAGGATTTTTCCTGGTATGTGCATTTTGTCCTAAGGAATTAATGGTCACAAATTCCTGTTTCGACTTTCGGGTCTTTGGAAGCTGTGGATTGATCAGTCTTTACTTCTATACTGCTGTTTCTTGCAGGACGTTTAAGACAGCCTGCAGTGTATGTTGGAGGCATGCAACCCAACAGGGGAGCTTATATTGGAAATTTTGGATATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGGTATGTCCCCGAGGTTCCTCTTTGTGCACCCAAGCCTGCCAATACATTCTAATTTCTAATTTTATTGTTTTGTTTAACTCTTATGTCCTGCGTTTTGCATTGCTTTGCTTTAAAAAATTCGAAGTTATGAGATTTTATTTATTTTCTTTTCTGTTTGCCGTCAAGTCTTATAGTAAATGAACGATATTGTCAAGTAATTGTTAAATGTAAATATATGCTTTCAGGTTGTGTATTTCATTTTAAGTACTACAACCTCGCTTGTTTTTTTATTGGACCTTATATCCTAGTTTTCATTGTGTCTTAAGATGGTTGATAGAAACCACGTGGTTGGTATTCATTCTCTGCAGTGCCCTCTTGATGTTAGTATTTATGATTAAAGTCACAAGAGGTATATTACCAATCACTACATGCAACATTTCTTAGGATATGTTTTTTTGTCACCTCCTAGAAGTCAGGATTGATACCTGATCAGTGGTGTGACTCAGTGTGATTGGTAATTGCAGGAATACCATAGAAGTTATTTGAGGATATGTGCCAAGACTAATGTAATTGAACGGGGAGAAGCATGGCTAGTATTATTGGAGAAGTTTCATATCTTGTTTTCACTTGCTTTATAGTTATATTAGAAGTCAGTTGGTAGGATTTGATCACTCTGATCTCTTGTTAATTGGGATACCGAATATTTGTCTTCTGGTATCACAGTGGACTGGGGTTTTTAAAATGATTTCCTCCTGTTAAGTTTGCATTGTTTCAGATGATGCAACCATCTAAATTTCTGCTTTCAAAATCTTATTTCTTAGAAATATTTAAAATGTTTTCAATCATTCTTCTTCTATGCAGTTATGCTACGTATGGACCTGAGTATGTCTACCCACAGGTATCACTATTGCTTTATTTACTTATGTCTGCAATTTTGTGTTTGGAGGGTGGAAGTAGGGAAGGGTGATATGAAGGGTATCTTTAAAAGTTCGTCAAGGTTTTTGATAGTTCGAGCTTAATATGCTCAGTGGATTTGATTTTCTGTCTTGTATCCTTTGCACAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCTGGGTCAGCGAACCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGGTACGGAGCAGTACATGGATATGCAATGCCAAGCCCTCAGATCCTGCAGTTTAGTGGTCCTAATGTCAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGTATTTTACTTTGTATGCAGATTATTCTTGATTGCAACATTGAGCAATATTAGTTTTGACTAGTATTTTTAGGTATTTTTCTTTGAATTTTGGAATTTTTATTGTTATTAATTGGATCTCTTTTGTGTAATTATGTAATTTTTTTTAGTTTCTCCGCTGATCTGGTCTTTCGGTCTTTTTCTCGAGGCCGTTTTTTTTGTTTCTTTCTTTTGTTTATCTTTTGTAAGTGCCTTCTTTAGAAAAATCTCAAAGAAGTATGTTGGCCAACTTGTGTTTAATCATTGCATTGACTTAGTTTAGTTATGTGGTGAATAAAATTTGATAGTACTCTGAAGGGTCAAAATTTTTTCTCTGCTTTCAAATGGCACCATCCAGTGAATACGGTGACTCAAGACTGGTTATCTTATGAGGACAGTAAAGATTTATTTTGATTTTATTTTGTTCTTTTTTTGTTTTCTTTCTTTTTTGCTGTGAAAACTTCTTACATTCAAGAGGAATGAAAGTGCAACAGAAGGAGAGGCCAGTCATGGGGATATTGAAATCCATAACTGAAGGAAAACTGGACAAGGATCCATGGGGGCAAATGATGAGAAAAAATGTGTTTTACTACAGAACAAAGAAGATATAATTTATTGAGATATCTTTGTTGCTTAATATAATTTAGGTCACGTTTCTGTTTGTTTTACATGTACTATGTTTTTAATTGACTGATGTAGAATGGGGAAAACTAAAACAATATGGTTTGACATGTTAAGACATGCTTGATTAGAAAAACGTGTTTATTTCATCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGA

mRNA sequence

ATGGCTTATCAGCATGGCCCGGGTCCTAGTTCGATATCTGGATCAAGTTCGAGTTCTGGTTTCTTGAACTCTCCCTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGCGAGACTATGAGGCGATACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTGGCTTCACTTGGCCGACCTCGTCCACCTATATCTTATGGACGTTTAAGACAGCCTGCAGTGTATGTTGGAGGCATGCAACCCAACAGGGGAGCTTATATTGGAAATTTTGGATATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGGTATGTCCCCGAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCTGGGTCAGCGAACCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGGTACGGAGCAGTACATGGATATGCAATGCCAAGCCCTCAGATCCTGCAGTTTAGTGGTCCTAATGTCAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGA

Coding sequence (CDS)

ATGGCTTATCAGCATGGCCCGGGTCCTAGTTCGATATCTGGATCAAGTTCGAGTTCTGGTTTCTTGAACTCTCCCTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGCGAGACTATGAGGCGATACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTGGCTTCACTTGGCCGACCTCGTCCACCTATATCTTATGGACGTTTAAGACAGCCTGCAGTGTATGTTGGAGGCATGCAACCCAACAGGGGAGCTTATATTGGAAATTTTGGATATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGGTATGTCCCCGAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCTGGGTCAGCGAACCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGGTACGGAGCAGTACATGGATATGCAATGCCAAGCCCTCAGATCCTGCAGTTTAGTGGTCCTAATGTCAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGA

Protein sequence

MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYVPEGGYNPFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

Homology

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BLAST of Cla021912 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-31
Identity = 100/254 (39.37%), Postives = 127/254 (50.00%), Query Frame = 1


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           ++S  +N  FGDT  TKVFVGGLAW+T  E M  +F ++G+ILEAV+I+DK T RSKGYG
Sbjct: 2   TTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYG 61

Query: 77  FVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRG 136
           FVTF+D ++A RAC D TPII+GRRANCNLASLG        GRLR+         P +G
Sbjct: 62  FVTFKDAKAATRACEDSTPIINGRRANCNLASLG--------GRLRKSPTMT---SPQQG 121

Query: 137 AYIGNFGYQQPVSYAYQQGLAYPPYGYVPEGGYNPFVGQQYLQIYGVPG---SANPTI-Y 196
              GN      V    Q    Y P G+  +   +     Q +  YG P    + N T   
Sbjct: 122 PKNGNRATPPHVGNHSQW---YYPSGFTNQ--QHQQQNHQAVPFYGYPSAYVAPNMTFNQ 181

Query: 197 HYGQLGQTVPGGHGYGAV--HGYAMPSPQIL---QFSGPNVNALTSSPMPTIQAPYP--- 256
             G +G T   G+ Y  +     + P PQ      + G  V    +SPM      YP   
Sbjct: 182 KVGYVGGTYMNGY-YAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQ 238

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BLAST of Cla021912 vs. Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.4e-30
Identity = 80/196 (40.82%), Postives = 101/196 (51.53%), Query Frame = 1


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R+ QP  +  G+Q    A +    Y  P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPG-FAFGVQQIHPALVQR-PYGIP 126

Query: 148 VSYAY-----QQGLAYPPYGYVPEGGYNPFVGQQYLQIYGVPGSANPTIYHYGQLGQTVP 207
             Y Y     QQGL  P          +P++            +A      Y        
Sbjct: 127 AHYVYPQAYVQQGLVIPHVQQTAAASTSPYIDYTSAAYAQYAAAAAAAYDQYPYAASPAT 186

Query: 208 GGHGYGAVHGYAMPSP 219
            G+   A +GYA+P P
Sbjct: 187 TGYVTAAGYGYAVPQP 194

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BLAST of Cla021912 vs. Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.4e-30
Identity = 84/215 (39.07%), Postives = 101/215 (46.98%), Query Frame = 1


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R+ QP    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQIHPALIQRPFGI--P 126

Query: 148 VSYAYQQGLAYP--------PYGYVPEGGYNPFVGQQYLQIYGVPGSANPTIYHYGQLGQ 207
             Y Y Q    P        P        Y  +    Y Q      +A    Y Y     
Sbjct: 127 AHYVYPQAYVQPGVVIPHVQPTAATSTSPYIDYTSAAYAQYSAAAAAAAYDQYPYA---- 186

Query: 208 TVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSS 235
             P   GY    GY    PQ L  + P   A  ++
Sbjct: 187 ASPAATGYVTAAGYGYAVPQPLTAAAPGSAAAAAA 209

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BLAST of Cla021912 vs. Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.3e-30
Identity = 81/199 (40.70%), Postives = 101/199 (50.75%), Query Frame = 1


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R+ QP    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQIHPALIQRPFGI--P 126

Query: 148 VSYAY-----QQGLAYPPYGYVPEGGYNPFV---GQQYLQIYGVPGSANPTIYHYGQLGQ 207
             Y Y     Q G+  P          +P++      Y Q Y    +A      Y     
Sbjct: 127 AHYVYPHAFVQPGVVIPHVQQAAAASTSPYIDYTSAAYAQ-YSAAAAAAAAYDQYPYAAS 186

Query: 208 TVPGGHGYGAVHGYAMPSP 219
               G+   A +GYA+P P
Sbjct: 187 PATTGYVTTAGYGYAVPQP 196

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BLAST of Cla021912 vs. Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.5e-29
Identity = 83/202 (41.09%), Postives = 101/202 (50.00%), Query Frame = 1


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R+ QP  +  G+     A+I    Y  P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRVMQPG-FTFGVPQIHPAFIQR-PYGIP 126

Query: 148 VSYAYQQGLAYP----PY------GYVPEGGYNPFVGQQYLQIYGVPGSANPTIY-HYGQ 207
             Y Y Q    P    P+             Y  + G  Y Q      +A    Y  Y  
Sbjct: 127 THYVYPQAFMQPSVVIPHIQPTATSATASSPYIDYTGAAYAQYASAATAAAAAAYEQYPY 186

Query: 208 LGQTVPGGHGYGAVHGYAMPSP 219
                  G+   A +GYAM  P
Sbjct: 187 AASPAATGYVAAAGYGYAMQQP 200

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BLAST of Cla021912 vs. TrEMBL
Match: A0A0A0KHA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401470 PE=4 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 5.6e-151
Identity = 262/277 (94.58%), Postives = 265/277 (95.67%), Query Frame = 1


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYV--------PEGGYN 180
           GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGY         P+GGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSA+PTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 268
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 277

[Close]

BLAST of Cla021912 vs. TrEMBL
Match: A0A061FMY5_THECC (RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 OS=Theobroma cacao GN=TCM_034819 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 3.4e-124
Identity = 219/286 (76.57%), Postives = 242/286 (84.62%), Query Frame = 1


Query: 1   MAYQHGPGPSSISGSSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI 60
           MAYQ  PGPSS  GSSSSSGF  +NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI
Sbjct: 1   MAYQPIPGPSS--GSSSSSGFQYINSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI 60

Query: 61  LEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY 120
           LEAVVITDKNTGRSKGYGFVTFRDPE+ARRACADPTPIIDGRRANCNLASLGRPRPP+ Y
Sbjct: 61  LEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPVPY 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGY--------VPEGGYN 180
           GRLR  + Y+GG+Q  RGAY+G+FGYQ P+SY+YQQGL YP YGY         P+G YN
Sbjct: 121 GRLRPASPYIGGVQATRGAYVGSFGYQPPLSYSYQQGLMYPSYGYPTYGHEYLYPQGVYN 180

Query: 181 PFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           P+  QQYLQIYGVPGSA   +Y YGQLGQTVP GHGY AV GYA+PS QI+QF GP+ NA
Sbjct: 181 PYAAQQYLQIYGVPGSAGTALYPYGQLGQTVPSGHGYSAVQGYALPSHQIVQFGGPSANA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 277
           +T+S MPTIQ PYP G+  PV AQPQF+V +PSQF+QGSGSDQT+G
Sbjct: 241 ITTSAMPTIQTPYPGGMATPVPAQPQFIVTTPSQFMQGSGSDQTTG 284

[Close]

BLAST of Cla021912 vs. TrEMBL
Match: W9R6Z7_9ROSA (RNA-binding protein 24 OS=Morus notabilis GN=L484_024805 PE=4 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 3.9e-120
Identity = 211/287 (73.52%), Postives = 237/287 (82.58%), Query Frame = 1


Query: 1   MAYQHGPGPSSISGSSSSSG---FLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGE 60
           MAY H   P   SGSSSSSG   FLNSPFGDTTYTKVFVGGLAWETQS+TMRRYFEQFGE
Sbjct: 1   MAYHHQQVPGPSSGSSSSSGYHQFLNSPFGDTTYTKVFVGGLAWETQSDTMRRYFEQFGE 60

Query: 61  ILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPIS 120
           ILEAVVITDKNTGRSKGYGFVTFR+PE+ARRACADP P+IDGRRANCNLASLGRPRPP+ 
Sbjct: 61  ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPAPVIDGRRANCNLASLGRPRPPMP 120

Query: 121 YGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYV--------PEGGY 180
           YGR R    YVG +Q  RG Y+GNFGYQQP+SY Y QGL YP YGY         P+GGY
Sbjct: 121 YGRPRPATPYVGNVQSARGTYVGNFGYQQPLSYGY-QGLMYPQYGYTTYGPDYVYPQGGY 180

Query: 181 NPFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVN 240
           NP+ GQQYLQIYG+PG+ N  +Y YGQ+ QT+P G GY A+HGYAMP  QI+QF GP+VN
Sbjct: 181 NPYTGQQYLQIYGLPGTVNTAMYPYGQVSQTLPSGQGYTAMHGYAMPGHQIVQFGGPSVN 240

Query: 241 ALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 277
           ALT+SPMPTIQ+PYP+G+ APV AQPQF+V +PSQ+VQG GSDQT+G
Sbjct: 241 ALTTSPMPTIQSPYPTGMAAPVMAQPQFIVPAPSQYVQGGGSDQTTG 286

[Close]

BLAST of Cla021912 vs. TrEMBL
Match: A0A067KKX2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08033 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 8.8e-120
Identity = 215/287 (74.91%), Postives = 238/287 (82.93%), Query Frame = 1


Query: 1   MAYQHGPGPSSISGSSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI 60
           MAYQ  PGPSS  GSSSSSGF  LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI
Sbjct: 1   MAYQPIPGPSS--GSSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI 60

Query: 61  LEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY 120
           LEAVVITDKNTGRSKGYGFVTFR+PESA+RACADPTPIIDGRRANCNLASLGRPRPP+ Y
Sbjct: 61  LEAVVITDKNTGRSKGYGFVTFREPESAKRACADPTPIIDGRRANCNLASLGRPRPPLPY 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYV--------PEGGYN 180
           GRLR    Y+  +Q  RG Y+G+FGYQQP+SY YQQGL Y PYGY         P+G YN
Sbjct: 121 GRLRPATPYIASVQNPRGTYVGSFGYQQPLSYNYQQGLMYHPYGYAAYGPEYVYPQGVYN 180

Query: 181 PFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           P+ GQ YLQIYGVPG+ N  +Y YGQLGQT+PGGHGY  V GYAMP  QI+QF GP+VN 
Sbjct: 181 PYAGQPYLQIYGVPGAVNTAMYPYGQLGQTLPGGHGYSTVQGYAMPGHQIVQFGGPSVNP 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPS-QFVQGSGSDQTSG 277
           +T+SPM TIQ PYP+GI APV AQP F+V +PS Q++QGSGSDQT+G
Sbjct: 241 ITTSPMATIQTPYPTGIAAPVPAQPPFIVPAPSPQYMQGSGSDQTAG 285

[Close]

BLAST of Cla021912 vs. TrEMBL
Match: F6I6W0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00660 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 2.0e-119
Identity = 214/286 (74.83%), Postives = 234/286 (81.82%), Query Frame = 1


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQ  PGPSS S SSS   FLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQPIPGPSSGSSSSSGFQFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DP PIIDGRRANCNLASLGRPRP +SYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACLDPAPIIDGRRANCNLASLGRPRPSMSYGR 120

Query: 121 LRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYV--------PEGGYNPF 180
           LR    Y+G +   RG+Y+GNFGYQQPVSY+YQQG  YP YGY         P+G YNP+
Sbjct: 121 LRPVTPYLGSVPATRGSYVGNFGYQQPVSYSYQQGFMYPSYGYAAYGPEYVYPQGVYNPY 180

Query: 181 VGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALT 240
            GQQYLQIYGVPG+ N  IY YGQLGQT+P  HGY  V GYAMP  Q +QF G +VNA++
Sbjct: 181 PGQQYLQIYGVPGTVNTAIYPYGQLGQTLPSSHGYTTVQGYAMPGHQFMQFGGSSVNAIS 240

Query: 241 SSPMPTIQAPYPSGIPAPVAAQPQFVV--HSPSQFVQGSGSDQTSG 277
           +SP+PTIQAPYP+GI APV AQPQF+V  HSP QF+QGSG DQT+G
Sbjct: 241 TSPIPTIQAPYPTGIAAPVPAQPQFIVPAHSP-QFIQGSGPDQTTG 285

[Close]

BLAST of Cla021912 vs. NCBI nr
Match: gi|449458055|ref|XP_004146763.1| (PREDICTED: RNA-binding protein 24-A [Cucumis sativus])

HSP 1 Score: 559.3 bits (1440), Expect = 3.8e-156
Identity = 271/286 (94.76%), Postives = 274/286 (95.80%), Query Frame = 1


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYV--------PEGGYN 180
           GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGY         P+GGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSA+PTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 277
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]

BLAST of Cla021912 vs. NCBI nr
Match: gi|659129704|ref|XP_008464801.1| (PREDICTED: RNA-binding protein 24-A [Cucumis melo])

HSP 1 Score: 558.5 bits (1438), Expect = 6.4e-156
Identity = 271/286 (94.76%), Postives = 274/286 (95.80%), Query Frame = 1


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPIS+  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYV--------PEGGYN 180
           GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGY         P+GGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSA+PTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 277
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]

BLAST of Cla021912 vs. NCBI nr
Match: gi|700192573|gb|KGN47777.1| (hypothetical protein Csa_6G401470 [Cucumis sativus])

HSP 1 Score: 541.6 bits (1394), Expect = 8.1e-151
Identity = 262/277 (94.58%), Postives = 265/277 (95.67%), Query Frame = 1


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYV--------PEGGYN 180
           GRLRQPAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGY         P+GGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSA+PTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 268
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 277

[Close]

BLAST of Cla021912 vs. NCBI nr
Match: gi|590597624|ref|XP_007018664.1| (RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 452.6 bits (1163), Expect = 4.9e-124
Identity = 219/286 (76.57%), Postives = 242/286 (84.62%), Query Frame = 1


Query: 1   MAYQHGPGPSSISGSSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI 60
           MAYQ  PGPSS  GSSSSSGF  +NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI
Sbjct: 1   MAYQPIPGPSS--GSSSSSGFQYINSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI 60

Query: 61  LEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISY 120
           LEAVVITDKNTGRSKGYGFVTFRDPE+ARRACADPTPIIDGRRANCNLASLGRPRPP+ Y
Sbjct: 61  LEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPVPY 120

Query: 121 GRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGY--------VPEGGYN 180
           GRLR  + Y+GG+Q  RGAY+G+FGYQ P+SY+YQQGL YP YGY         P+G YN
Sbjct: 121 GRLRPASPYIGGVQATRGAYVGSFGYQPPLSYSYQQGLMYPSYGYPTYGHEYLYPQGVYN 180

Query: 181 PFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           P+  QQYLQIYGVPGSA   +Y YGQLGQTVP GHGY AV GYA+PS QI+QF GP+ NA
Sbjct: 181 PYAAQQYLQIYGVPGSAGTALYPYGQLGQTVPSGHGYSAVQGYALPSHQIVQFGGPSANA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 277
           +T+S MPTIQ PYP G+  PV AQPQF+V +PSQF+QGSGSDQT+G
Sbjct: 241 ITTSAMPTIQTPYPGGMATPVPAQPQFIVTTPSQFMQGSGSDQTTG 284

[Close]

BLAST of Cla021912 vs. NCBI nr
Match: gi|703092030|ref|XP_010094513.1| (RNA-binding protein 24 [Morus notabilis])

HSP 1 Score: 439.1 bits (1128), Expect = 5.7e-120
Identity = 211/287 (73.52%), Postives = 237/287 (82.58%), Query Frame = 1


Query: 1   MAYQHGPGPSSISGSSSSSG---FLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGE 60
           MAY H   P   SGSSSSSG   FLNSPFGDTTYTKVFVGGLAWETQS+TMRRYFEQFGE
Sbjct: 1   MAYHHQQVPGPSSGSSSSSGYHQFLNSPFGDTTYTKVFVGGLAWETQSDTMRRYFEQFGE 60

Query: 61  ILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPIS 120
           ILEAVVITDKNTGRSKGYGFVTFR+PE+ARRACADP P+IDGRRANCNLASLGRPRPP+ 
Sbjct: 61  ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPAPVIDGRRANCNLASLGRPRPPMP 120

Query: 121 YGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYV--------PEGGY 180
           YGR R    YVG +Q  RG Y+GNFGYQQP+SY Y QGL YP YGY         P+GGY
Sbjct: 121 YGRPRPATPYVGNVQSARGTYVGNFGYQQPLSYGY-QGLMYPQYGYTTYGPDYVYPQGGY 180

Query: 181 NPFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVN 240
           NP+ GQQYLQIYG+PG+ N  +Y YGQ+ QT+P G GY A+HGYAMP  QI+QF GP+VN
Sbjct: 181 NPYTGQQYLQIYGLPGTVNTAMYPYGQVSQTLPSGQGYTAMHGYAMPGHQIVQFGGPSVN 240

Query: 241 ALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 277
           ALT+SPMPTIQ+PYP+G+ APV AQPQF+V +PSQ+VQG GSDQT+G
Sbjct: 241 ALTTSPMPTIQSPYPTGMAAPVMAQPQFIVPAPSQYVQGGGSDQTTG 286

The following BLAST results are available for this feature:

BLAST of Cla021912 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARP1_ARATH	1.3e-31	39.37	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1	[more]
RB24B_XENLA	2.4e-30	40.82	RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1	[more]
RB24A_XENLA	2.4e-30	39.07	RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1	[more]
RBM24_XENTR	9.3e-30	40.70	RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1	[more]
RBM24_DANRE	3.5e-29	41.09	RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1	[more]

BLAST of Cla021912 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHA9_CUCSA	5.6e-151	94.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401470 PE=4 SV=1	[more]
A0A061FMY5_THECC	3.4e-124	76.57	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 OS=Theobroma cacao GN=...	[more]
W9R6Z7_9ROSA	3.9e-120	73.52	RNA-binding protein 24 OS=Morus notabilis GN=L484_024805 PE=4 SV=1	[more]
A0A067KKX2_JATCU	8.8e-120	74.91	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08033 PE=4 SV=1	[more]
F6I6W0_VITVI	2.0e-119	74.83	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00660 PE=4 SV=...	[more]

BLAST of Cla021912 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458055\|ref\|XP_004146763.1\|	3.8e-156	94.76	PREDICTED: RNA-binding protein 24-A [Cucumis sativus]	[more]
gi\|659129704\|ref\|XP_008464801.1\|	6.4e-156	94.76	PREDICTED: RNA-binding protein 24-A [Cucumis melo]	[more]
gi\|700192573\|gb\|KGN47777.1\|	8.1e-151	94.58	hypothetical protein Csa_6G401470 [Cucumis sativus]	[more]
gi\|590597624\|ref\|XP_007018664.1\|	4.9e-124	76.57	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 [Theobroma cacao]	[more]
gi\|703092030\|ref\|XP_010094513.1\|	5.7e-120	73.52	RNA-binding protein 24 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003729	mRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021912	Cla021912.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 34..90 score: 2.2
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 33..105 score: 1.8
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 32..109 score: 17
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 24..114 score: 5.1
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 31..145 score: 2.04
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 28..113 score: 8.2E-42coord: 216..245 score: 8.2
None	No IPR available	PANTHER	PTHR24012:SF421	SUBFAMILY NOT NAMED	coord: 216..245 score: 8.2E-42coord: 28..113 score: 8.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021912	Cla97C08G151980	Watermelon (97103) v2	wmwmbB100
Cla021912	Csa6G401470	Cucumber (Chinese Long) v2	cuwmB469
Cla021912	MELO3C026514	Melon (DHL92) v3.5.1	mewmB301
Cla021912	ClCG08G009160	Watermelon (Charleston Gray)	wcgwmB400
Cla021912	CSPI06G20930	Wild cucumber (PI 183967)	cpiwmB484
Cla021912	Cucsa.005270	Cucumber (Gy14) v1	cgywmB056
Cla021912	CmaCh12G006950	Cucurbita maxima (Rimu)	cmawmB153
Cla021912	CmaCh05G009580	Cucurbita maxima (Rimu)	cmawmB752
Cla021912	CmoCh12G006310	Cucurbita moschata (Rifu)	cmowmB138
Cla021912	CmoCh05G009780	Cucurbita moschata (Rifu)	cmowmB747
Cla021912	Lsi08G007670	Bottle gourd (USVL1VR-Ls)	lsiwmB465
Cla021912	Cp4.1LG11g07750	Cucurbita pepo (Zucchini)	cpewmB100
Cla021912	Cp4.1LG07g05700	Cucurbita pepo (Zucchini)	cpewmB788
Cla021912	CsGy6G020260	Cucumber (Gy14) v2	cgybwmB440
Cla021912	MELO3C026514.2	Melon (DHL92) v3.6.1	medwmB296
Cla021912	Carg17634	Silver-seed gourd	carwmB0128
Cla021912	Carg21898	Silver-seed gourd	carwmB0199
Cla021912	CsaV3_6G035960	Cucumber (Chinese Long) v3	cucwmB495
Cla021912	Bhi04G000951	Wax gourd	wgowmB301

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021912	Wax gourd	wgowmB538
Cla021912	Cucumber (Gy14) v1	cgywmB521
Cla021912	Cucurbita maxima (Rimu)	cmawmB514
Cla021912	Wild cucumber (PI 183967)	cpiwmB389
Cla021912	Watermelon (Charleston Gray)	wcgwmB276
Cla021912	Cucumber (Gy14) v2	cgybwmB355
Cla021912	Silver-seed gourd	carwmB0332