Carg17634 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17634
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding protein like
Location	Cucurbita_argyrosperma_scaffold_119 : 480146 .. 481441 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTCCTGTCTGGCCCATCTCATCCCCCTTTCTTTCTCATTTTATTTCTAGGGTTTCCATTTCCAATTATGATCACTCTTGTTCGCTTTGATCATTCCTCTTCTGCCTTACTTTCCCTCTTTCCTCTTTTCTTCCCCTTTCAATCCCTTTCACTTTTCTCCTGATTCTCTCTGTATATTCCCTCAATTTCTCAAGGGTTTTCCTAGGGGTTTGCTTCTGCTCTGTGGGTTTCTCTCTAATTCCCCAATTCTCCACCACTTCATTGAATTCTACTTACCCTTTGTGTCTCTGTTTATATTGTATACTGGGTGTTCATTTCTTTGGATTTCTCTACTAATAATGGCTTATCAGCATATTCCGGTTCCTAGTTCCGTTTCTGGATCAACTTCCAGTTCTGGGTTCTTGAACTCTCCCTTTGGTGATACAACTTACACCAAGGTCTTCGTTGGTGGCTTGGCTTGGGAGACTCAGAACGACACTATGAGGCACTACTTTGAGCAGTTTGGGGAGATTCTTGAAGCCGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGAGTATTAATGGGTTTTTTTTTCTTTTCTTTTTACTCTTATGGGTTTTTTTGTCAACTTTATACTTTTAATTTCTACTTTCTAAAAGTAATAGCCTAAGAGCAGTCGTTTTACACGTTTTTTTCTATCACGGTTGATCCACAAATATTTATATTCTTGACGTTAGATTGACCTGAACGTTTGTTCCTGTTTACTTGGAGGGCTTTAGGTGACTTTCCGGGATCCAGAGTCAGCTAGAAGAGCTTGCTCAGATCCTACTCCAATTATTGATGGCAGGCGAGCCAATTGTAATCTGGCTTCACTTGGCCGGCCTCGGCCACCTATATCTTATGGTATTATTTGCTTATTTTGCTTTTTATTTTTTAAGCAAATCACATTGGCAGTTCTAGACGTGCGTGATTGTATGATCAGTGATTTTTCCTGGTATGTGCTTTTTGAAGCTCTGGATTGATGAGTCTTTATTTCTACACTGTTGATTCTTACAGGACGTTTTAGACCGCCTGCAGTCTATGTTGGAGGAATGCAACCCAACAGGGGAGCTTATATTGGAAATTTTGGCTACCAACAACCGGTTTCTTATCCTTATCAGCAGGGACTTGCATATCCTCCTTATAGGTGTGTCCCCGAGGTTTCTCTTTGTGCATCCAAGCCTGCCATTACAGTGAAATTTCATTATTTTGTTTGA

mRNA sequence

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTCCTGTCTGGCCCATCTCATCCCCCTTTCTTTCTCATTTTATTTCTAGGGTTTCCATTTCCAATTATGATCACTCTTGTTCGCTTTGATCATTCCTCTTCTGCCTTACTTTCCCTCTTTCCTCTTTTCTTCCCCTTTCAATCCCTTTCACTTTTCTCCTGATTCTCTCTGTATATTCCCTCAATTTCTCAAGGGTTTTCCTAGGGGTTTGCTTCTGCTCTGTGGGTTTCTCTCTAATTCCCCAATTCTCCACCACTTCATTGAATTCTACTTACCCTTTGTGTCTCTGTTTATATTGTATACTGGGTGTTCATTTCTTTGGATTTCTCTACTAATAATGGCTTATCAGCATATTCCGGTTCCTAGTTCCGTTTCTGGATCAACTTCCAGTTCTGGGTTCTTGAACTCTCCCTTTGGTGATACAACTTACACCAAGGTCTTCGTTGGTGGCTTGGCTTGGGAGACTCAGAACGACACTATGAGGCACTACTTTGAGCAGTTTGGGGAGATTCTTGAAGCCGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCAGCTAGAAGAGCTTGCTCAGATCCTACTCCAATTATTGATGGCAGGCGAGCCAATTGTAATCTGGCTTCACTTGGCCGGCCTCGGCCACCTATATCTTATGGACGTTTTAGACCGCCTGCAGTCTATGTTGGAGGAATGCAACCCAACAGGGGAGCTTATATTGGAAATTTTGGCTACCAACAACCGGTTTCTTATCCTTATCAGCAGGGACTTGCATATCCTCCTTATAGGTGTGTCCCCGAGGTTTCTCTTTGTGCATCCAAGCCTGCCATTACAGTGAAATTTCATTATTTTGTTTGA

Coding sequence (CDS)

ATGGCTTATCAGCATATTCCGGTTCCTAGTTCCGTTTCTGGATCAACTTCCAGTTCTGGGTTCTTGAACTCTCCCTTTGGTGATACAACTTACACCAAGGTCTTCGTTGGTGGCTTGGCTTGGGAGACTCAGAACGACACTATGAGGCACTACTTTGAGCAGTTTGGGGAGATTCTTGAAGCCGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCAGCTAGAAGAGCTTGCTCAGATCCTACTCCAATTATTGATGGCAGGCGAGCCAATTGTAATCTGGCTTCACTTGGCCGGCCTCGGCCACCTATATCTTATGGACGTTTTAGACCGCCTGCAGTCTATGTTGGAGGAATGCAACCCAACAGGGGAGCTTATATTGGAAATTTTGGCTACCAACAACCGGTTTCTTATCCTTATCAGCAGGGACTTGCATATCCTCCTTATAGGTGTGTCCCCGAGGTTTCTCTTTGTGCATCCAAGCCTGCCATTACAGTGAAATTTCATTATTTTGTTTGA

Protein sequence

MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGRFRPPAVYVGGMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYRCVPEVSLCASKPAITVKFHYFV

Homology

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BLAST of Carg17634 vs. NCBI nr
Match: XP_023537721.1 (RNA-binding protein 24-B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.9 bits (803), Expect = 3.6e-82
Identity = 149/151 (98.68%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEILE 60
           MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQ+DTMRHYF+QFGEILE
Sbjct: 1   MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFQQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 FRPPAVYVGGMQPNRGAYIGNFGYQQPVSYP 152
           FRPPAVYVGGMQPNRGAYIGNFGYQQPVSYP
Sbjct: 121 FRPPAVYVGGMQPNRGAYIGNFGYQQPVSYP 151

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BLAST of Carg17634 vs. NCBI nr
Match: XP_022155905.1 (RNA-binding protein 24-A [Momordica charantia])

HSP 1 Score: 312.8 bits (800), Expect = 7.9e-82
Identity = 147/161 (91.30%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 1   MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEILE 60
           MAYQHIP PSS+SGS++SSGFLNSPFGDTTYTKVFVGGLAWETQ++TMR +FEQFGEILE
Sbjct: 1   MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC+DPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 FRPPAVYVGGMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPY 162
            RPPA YVGGMQPNRG +IGNFGYQQPVSY YQQGLAYPPY
Sbjct: 121 LRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPY 161

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BLAST of Carg17634 vs. NCBI nr
Match: XP_022946505.1 (RNA-binding protein 24-A [Cucurbita moschata] >XP_022946506.1 RNA-binding protein 24-A [Cucurbita moschata])

HSP 1 Score: 311.2 bits (796), Expect = 2.3e-81
Identity = 149/161 (92.55%), Postives = 153/161 (95.03%), Query Frame = 0


Query: 1   MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEILE 60
           MAYQH   PSS+SGS+SSSGFLNSPFGDTTYTKVFVGGLAWETQ++TMR YFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 FRPPAVYVGGMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPY 162
            RPPAVYVGGMQPNRG YIGNFGYQQPVSY YQQGLAYPPY
Sbjct: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPY 161

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BLAST of Carg17634 vs. NCBI nr
Match: XP_022951231.1 (RNA-binding protein 24-B-like [Cucurbita moschata])

HSP 1 Score: 310.5 bits (794), Expect = 3.9e-81
Identity = 148/151 (98.01%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEILE 60
           MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQ+DTMRHYFEQFGEILE
Sbjct: 1   MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTF+DPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 FRPPAVYVGGMQPNRGAYIGNFGYQQPVSYP 152
           FRPPAVYVG MQPNRGAYIGNFGYQQPVSYP
Sbjct: 121 FRPPAVYVGRMQPNRGAYIGNFGYQQPVSYP 151

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BLAST of Carg17634 vs. NCBI nr
Match: XP_023546044.1 (RNA-binding protein 24-A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.5 bits (789), Expect = 1.5e-80
Identity = 147/161 (91.30%), Postives = 152/161 (94.41%), Query Frame = 0


Query: 1   MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEILE 60
           MAYQH   PSS+SGS+SSS FLNSPFGDTTYTKVFVGGLAWETQ++TMR YFEQFGEILE
Sbjct: 1   MAYQHGRGPSSISGSSSSSSFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DPTP+IDGRRANCNLASLGRPRPPISYGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPVIDGRRANCNLASLGRPRPPISYGR 120

Query: 121 FRPPAVYVGGMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPY 162
            RPPAVYVGGMQPNRG YIGNFGYQQPVSY YQQGLAYPPY
Sbjct: 121 LRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPY 161

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BLAST of Carg17634 vs. TAIR10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 235.0 bits (598), Expect = 3.8e-62
Identity = 116/166 (69.88%), Postives = 133/166 (80.12%), Query Frame = 0


Query: 1   MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEILE 60
           MAYQ  PVP       S   +LNSPFGDTT+TKVFVGGLAWETQ++T+R +FEQ+GEILE
Sbjct: 1   MAYQ--PVPG------SGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVI DKNTGRSKGYGFVTFRDPE+ARRAC+DPTPIIDGRRANCNLASLGRPRPP+ Y  
Sbjct: 61  AVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAV 120

Query: 121 -----GRFRPPAVYVGGMQPNRGAYIGNFGYQQPVSYPYQQGLAYP 160
                GR RP + Y+G +Q  RG+ IGN+ YQQP+ Y YQQG+ YP
Sbjct: 121 IPNMPGRLRPASPYIGNVQGPRGSLIGNYPYQQPLPYNYQQGVVYP 158

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BLAST of Carg17634 vs. TAIR10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 227.3 bits (578), Expect = 7.9e-60
Identity = 114/168 (67.86%), Postives = 130/168 (77.38%), Query Frame = 0


Query: 1   MAYQHIPVPSSVSGSTSSSGF--LNSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEI 60
           MAY  IP          SSGF  LNSPFGDTT+TKVFVGGLAWETQ++T+R +F+Q+G+I
Sbjct: 1   MAYHSIP----------SSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDI 60

Query: 61  LEAVVITDKNTGRSKGYGFVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISY 120
           LEAVVITDKNTGRSKGYGFVTFRDPE+ARRAC DPTPIIDGRRANCNLASLGR RPP+ Y
Sbjct: 61  LEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQY 120

Query: 121 -------GRFRPPAVYVGGMQPNRGAYIGNFGYQQPVSYPYQQGLAYP 160
                  GR RPP+ YVG +Q  RG + G+  Y QP +Y YQQG+ YP
Sbjct: 121 AVIPHAPGRVRPPSPYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVYP 158

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BLAST of Carg17634 vs. TAIR10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-42
Identity = 88/147 (59.86%), Postives = 101/147 (68.71%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEILEAVVITDKNTGRSKGYG 76
           S + +  SPFGDTTYTKVFVGGLAWET  D MR YFEQFGEILEAV+ITDKNTG+SKGYG
Sbjct: 2   SQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG 61

Query: 77  FVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPR--PPISYGRFRPPAVYVGGMQPN 136
           FVTFR+ +SA RA +DP P+IDGR+ANCN+AS GRPR  PP   G+   P+ Y  G    
Sbjct: 62  FVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---G 121

Query: 137 RGAYIGNFGYQQPVSYPYQQGLAYPPY 162
              Y G      P + P    L YP Y
Sbjct: 122 PSTYTGMAAPLPPAAAPQ---LMYPSY 142

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BLAST of Carg17634 vs. TAIR10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 164.1 bits (414), Expect = 8.3e-41
Identity = 75/104 (72.12%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEILEAVVITDKNTGRSKGYG 76
           S++ +  SPFGDTT+TKVFVGGLAWET  D MR YF+QFGEILEAV+ITDK TG+SKGYG
Sbjct: 2   SNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61

Query: 77  FVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGR 121
           FVTFRD +SA RA +DP P+IDGR+ANCN+AS GRPRP    GR
Sbjct: 62  FVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGR 105

[Close]

BLAST of Carg17634 vs. TAIR10
Match: AT2G46780.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 154.8 bits (390), Expect = 5.0e-38
Identity = 77/108 (71.30%), Postives = 86/108 (79.63%), Query Frame = 0


Query: 23  NSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFRD 82
           N+   DT  TK+FVGGLAWETQ DTMR YFEQFGEI+EAVVITDKNTGRSKGYGFVTF++
Sbjct: 13  NNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKE 72

Query: 83  PESARRACSDPTPIIDGRRANCNLASLG--RPRPPIS----YGRFRPP 125
            E+A RAC +  P+IDGRRANCNLA LG  +PRPP S     GRFR P
Sbjct: 73  AEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRFRSP 120

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BLAST of Carg17634 vs. Swiss-Prot
Match: sp|Q9M1S3|ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.1e-29
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEILEAVVITDKNTGRSKGYG 76
           ++S  +N  FGDT  TKVFVGGLAW+T  + M  +F ++G+ILEAV+I+DK T RSKGYG
Sbjct: 2   TTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYG 61

Query: 77  FVTFRDPESARRACSDPTPIIDGRRANCNLASLG 111
           FVTF+D ++A RAC D TPII+GRRANCNLASLG
Sbjct: 62  FVTFKDAKAATRACEDSTPIINGRRANCNLASLG 95

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BLAST of Carg17634 vs. Swiss-Prot
Match: sp|Q9BX46|RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.9e-27
Identity = 72/155 (46.45%), Postives = 87/155 (56.13%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQNDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T + ++R YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACSDPTPIIDGRRANCNLASLGRPRPPISYGRFRPPAVYVGGMQPNRGAYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R   P    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQLHPALIQRPFGI--P 126

Query: 148 VSYPYQQGLAYPPYRCVPEVSLCASKPAITVKFHY 183
             Y Y Q    P    +P V   A+  + T    Y
Sbjct: 127 AHYVYPQAFVQPGV-VIPHVQPTAAAASTTPYIDY 152

[Close]

BLAST of Carg17634 vs. Swiss-Prot
Match: sp|Q5ZMA3|RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 3.8e-27
Identity = 71/155 (45.81%), Postives = 87/155 (56.13%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQNDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T + ++R YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACSDPTPIIDGRRANCNLASLGRPRPPISYGRFRPPAVYVGGMQPNRGAYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R   P    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQLHPALIQRPFGI--P 126

Query: 148 VSYPYQQGLAYPPYRCVPEVSLCASKPAITVKFHY 183
             Y Y Q    P    +P V   A+  + T    Y
Sbjct: 127 AHYVYPQAFVQPGV-VIPHVQPAAAAASTTPYIGY 152

[Close]

BLAST of Carg17634 vs. Swiss-Prot
Match: sp|Q76LC6|RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.5e-27
Identity = 67/133 (50.38%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQNDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T + ++R YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 88  RACSDPTPIIDGRRANCNLASLG-RPRPPISYGRFRPPAVYVGGMQPNRGAYIGNFGYQQ 147
           RAC DP PIIDGR+AN NLA LG +PR       F  P ++   +Q   G          
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFGVPQIHPAFIQRPYGI--------- 126

Query: 148 PVSYPYQQGLAYP 160
           P  Y Y Q    P
Sbjct: 127 PTHYVYPQAFMQP 130

[Close]

BLAST of Carg17634 vs. Swiss-Prot
Match: sp|D3Z4I3|RBM24_MOUSE (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.5e-27
Identity = 71/155 (45.81%), Postives = 87/155 (56.13%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQNDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T + ++R YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACSDPTPIIDGRRANCNLASLGRPRPPISYGRFRPPAVYVGGMQPNRGAYIGNFGYQQP 147
           RAC DP PIIDGR+AN NLA LG      +  R   P    G  Q +       FG   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRIMQPGFAFGVQQLHPALIQRPFGI--P 126

Query: 148 VSYPYQQGLAYPPYRCVPEVSLCASKPAITVKFHY 183
             Y Y Q    P    +P V   A+  + T    Y
Sbjct: 127 AHYVYPQAFVQPGV-VIPHVQPTAAAASTTPYIDY 152

[Close]

BLAST of Carg17634 vs. TrEMBL
Match: tr|A0A0A0KHA9|A0A0A0KHA9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401470 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.7e-80
Identity = 148/163 (90.80%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 1   MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEILE 60
           MAYQH P PSS+SGS+SSSGFLNSPFGDTTYTKVFVGGLAWETQ++TMR YFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC+DPTPIIDGRRANCNLASLGRPRPP+SY  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRFRPPAVYVGGMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPY 162
           GR R PAVYVGGMQPNRG YIGNFGYQQPVSY YQQGLAYPPY
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPY 163

[Close]

BLAST of Carg17634 vs. TrEMBL
Match: tr|A0A1S3CME8|A0A1S3CME8_CUCME (RNA-binding protein 24-A OS=Cucumis melo OX=3656 GN=LOC103502602 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 2.9e-80
Identity = 148/163 (90.80%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 1   MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEILE 60
           MAYQH P PSS+SGS+SSSGFLNSPFGDTTYTKVFVGGLAWETQ++TMR YFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISY-- 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC+DPTPIIDGRRANCNLASLGRPRPPIS+  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRFRPPAVYVGGMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPY 162
           GR R PAVYVGGMQPNRG YIGNFGYQQPVSY YQQGLAYPPY
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPY 163

[Close]

BLAST of Carg17634 vs. TrEMBL
Match: tr|I1K789|I1K789_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100779244 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 3.2e-71
Identity = 136/164 (82.93%), Postives = 147/164 (89.63%), Query Frame = 0


Query: 1   MAYQHIPVPSSVSGSTSSSGF--LNSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEI 60
           MAYQ I VPS  SGS+SSSGF  LNSPFGDTTYTKVFVGGLAWETQ++TMR YF+QFGEI
Sbjct: 1   MAYQAIQVPS--SGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFDQFGEI 60

Query: 61  LEAVVITDKNTGRSKGYGFVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISY 120
           LEAVVITDKNTGRSKGYGFVTFRDPE+ARRAC+DPTP+IDGRRANCNLASLGRPRPP+ Y
Sbjct: 61  LEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPY 120

Query: 121 GRFRPPAVYVGGMQPNRGAYIGNFGY-QQPVSYPYQQGLAYPPY 162
           GR RP + YVG +QP RGAY+G FGY QQPVSY YQQGL YPPY
Sbjct: 121 GRIRPASPYVGSLQPARGAYVGGFGYQQQPVSYSYQQGLVYPPY 162

[Close]

BLAST of Carg17634 vs. TrEMBL
Match: tr|I1JSR0|I1JSR0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100782606 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 5.4e-71
Identity = 133/163 (81.60%), Postives = 146/163 (89.57%), Query Frame = 0


Query: 1   MAYQHIPVPSSVSGSTSSSGF--LNSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEI 60
           MAYQ +  PS  SGS+SSSGF  LNSPFGDTTYTKVFVGGLAWETQ++TMR YF+QFGEI
Sbjct: 1   MAYQAMQGPS--SGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFDQFGEI 60

Query: 61  LEAVVITDKNTGRSKGYGFVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISY 120
           LEAVVITDKNTGRSKGYGFVTFRDPE+ARRAC+DP+P+IDGRRANCNLASLGRPRPP+ Y
Sbjct: 61  LEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPSPVIDGRRANCNLASLGRPRPPLPY 120

Query: 121 GRFRPPAVYVGGMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPY 162
           GR RP + YVG +QP RGAY+G FGYQQPVSY YQQGL YPPY
Sbjct: 121 GRIRPASPYVGSLQPARGAYVGGFGYQQPVSYSYQQGLVYPPY 161

[Close]

BLAST of Carg17634 vs. TrEMBL
Match: tr|A0A061FMY5|A0A061FMY5_THECC (RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_034819 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 7.1e-71
Identity = 129/161 (80.12%), Postives = 143/161 (88.82%), Query Frame = 0


Query: 1   MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQNDTMRHYFEQFGEILE 60
           MAYQ IP PSS S S+S   ++NSPFGDTTYTKVFVGGLAWETQ++TMR YFEQFGEILE
Sbjct: 1   MAYQPIPGPSSGSSSSSGFQYINSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGR 120
           AVVITDKNTGRSKGYGFVTFRDPE+ARRAC+DPTPIIDGRRANCNLASLGRPRPP+ YGR
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPVPYGR 120

Query: 121 FRPPAVYVGGMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPY 162
            RP + Y+GG+Q  RGAY+G+FGYQ P+SY YQQGL YP Y
Sbjct: 121 LRPASPYIGGVQATRGAYVGSFGYQPPLSYSYQQGLMYPSY 161

The following BLAST results are available for this feature:

BLAST of Carg17634 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537721.1	3.6e-82	98.68	RNA-binding protein 24-B-like [Cucurbita pepo subsp. pepo]	[more]
XP_022155905.1	7.9e-82	91.30	RNA-binding protein 24-A [Momordica charantia]	[more]
XP_022946505.1	2.3e-81	92.55	RNA-binding protein 24-A [Cucurbita moschata] >XP_022946506.1 RNA-binding protei...	[more]
XP_022951231.1	3.9e-81	98.01	RNA-binding protein 24-B-like [Cucurbita moschata]	[more]
XP_023546044.1	1.5e-80	91.30	RNA-binding protein 24-A [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg17634 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76460.1	3.8e-62	69.88	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	7.9e-60	67.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.1	1.2e-42	59.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	8.3e-41	72.12	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46780.1	5.0e-38	71.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg17634 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M1S3\|ARP1_ARATH	3.1e-29	64.89	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
sp\|Q9BX46\|RBM24_HUMAN	2.9e-27	46.45	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
sp\|Q5ZMA3\|RBM24_CHICK	3.8e-27	45.81	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]
sp\|Q76LC6\|RBM24_DANRE	6.5e-27	50.38	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1	[more]
sp\|D3Z4I3\|RBM24_MOUSE	6.5e-27	45.81	RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1	[more]

BLAST of Carg17634 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KHA9\|A0A0A0KHA9_CUCSA	1.7e-80	90.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401470 PE=4 SV=1	[more]
tr\|A0A1S3CME8\|A0A1S3CME8_CUCME	2.9e-80	90.80	RNA-binding protein 24-A OS=Cucumis melo OX=3656 GN=LOC103502602 PE=4 SV=1	[more]
tr\|I1K789\|I1K789_SOYBN	3.2e-71	82.93	Uncharacterized protein OS=Glycine max OX=3847 GN=100779244 PE=4 SV=1	[more]
tr\|I1JSR0\|I1JSR0_SOYBN	5.4e-71	81.60	Uncharacterized protein OS=Glycine max OX=3847 GN=100782606 PE=4 SV=1	[more]
tr\|A0A061FMY5\|A0A061FMY5_THECC	7.1e-71	80.12	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 OS=Theobroma cacao OX=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17634-RA	Carg17634-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 33..105 e-value: 5.9E-24 score: 95.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 34..90 e-value: 2.2E-17 score: 62.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 32..109 score: 17.114
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 10..120 e-value: 2.9E-25 score: 90.8
None	No IPR available	PANTHER	PTHR44828	FAMILY NOT NAMED	coord: 1..163
None	No IPR available	PANTHER	PTHR44828:SF1	RNA RECOGNITION MOTIF-CONTAINING PROTEIN	coord: 1..163
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 32..107 e-value: 3.40783E-45 score: 145.065
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 5..120

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17634	Cla021912	Watermelon (97103) v1	carwmB0128
Carg17634	MELO3C026514	Melon (DHL92) v3.5.1	carmeB0135
Carg17634	ClCG08G009160	Watermelon (Charleston Gray)	carwcgB0129
Carg17634	CmaCh12G006950	Cucurbita maxima (Rimu)	carcmaB0172
Carg17634	CmaCh05G009580	Cucurbita maxima (Rimu)	carcmaB0174
Carg17634	CmoCh05G009780	Cucurbita moschata (Rifu)	carcmoB0183
Carg17634	CmoCh12G006310	Cucurbita moschata (Rifu)	carcmoB0181
Carg17634	Lsi08G007670	Bottle gourd (USVL1VR-Ls)	carlsiB120
Carg17634	Cp4.1LG07g05700	Cucurbita pepo (Zucchini)	carcpeB0193
Carg17634	Cp4.1LG11g07750	Cucurbita pepo (Zucchini)	carcpeB0191
Carg17634	MELO3C026514.2	Melon (DHL92) v3.6.1	carmedB0139
Carg17634	Cla97C08G151980	Watermelon (97103) v2	carwmbB0139
Carg17634	Bhi04G000951	Wax gourd	carwgoB0167

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17634	Carg21898	Silver-seed gourd	carcarB159

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17634	Wax gourd	carwgoB0168