CSPI06G20930 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G20930
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRNA binding protein, putative
LocationChr6 : 18993722 .. 18996642 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTATCAGCATGGTCCGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCCTGAACTCTCCTTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCATGGGAGACTCAGAGCGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTTGTGAGTATTAATGGTTTTTACTTTAATGGGTTTTTGTTAACTTTATACTTTTGTTTCTACTTTCTAAAAGTAATAGCCTAAGAACATTCGTTTTGACACCTTTTCTTTTCTAGCAAGCTAGTCGTATCTAATTGTTTGATCATTAATATCTATATTGTTGACATTGGAATGACCTGAACGTTTGTTCCTGTTTACATGGAGGGTTTTAGGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGTGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTAGCTTCACTTGGCCGGCCTCGCCCACCTTTATCTTATGGTATTATTCACTTATTTGATCTTTTATTGCTCAGCAAATCATATTGCTAGTTCCTGTCATGTGTATTTTTGTATGATCGGGGATTTTTCTTGGCATGTGCCATTTTGTTGAAAGGAATTAATGTTCACAAATTCCTGTTTTCAGTTTTTTAAAGCTCTAGATCGATTGGTCTTTACTTTTACACTGCTGTTTCTTACAGGAACAGGACGTTTAAGACAGCCTGCAGTTTATGTTGGAGGGATGCAACCCAACAGGGGAACTTATATTGGAAATTTTGGCTATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGGTATGTCTCCAAAGTTCTTCGTTGTGCATCCAAACCTACCAATATATTCAAATTTTGTTATTTTGTATAACTCCAATCTTTTGTGTTTTGCATTCCTATATCACGACCTTTGCATTTTGTATTATGACTCTGTGGGGATTTGTTCGCTTTCAGAAGTTCGAAATTATGATATTTGATTTATTTTTCATTTCTGATTGCCACTAAATCTTATATCAAATGAATGGTATCGTCTAGTTACTTTAGATGTAATTATGTAAATATATGCTTTCAGGTTGGGTGTTTCATTTTTTGAGGACAGTAACCTTGTCTTTTCTTTTGGACCTTATATCCTAGTTTTCATTGTTTCTTAACATGGTTCATAGATACCACTTGGTTGGTATACATTCCCTGCACTGCCAACTTAATGTTAGTATTTTTCTTTGAAGTCACAAGGTATATTACCAATCACTACATGCAGCATTCCTTAGGATATGTTTCTTTGTCACCTCCCAGAAATCAGGATTGGTACCTGATCAGTGATGTGGCACAGTGTGATTGGTAATTGCAGGAATACCATAGAAGTTGTATGAGGATATGTGCCAAGACTAATGTAATTGAACGGGAAGAAGCATGGCTAGTATTATTGGTGAAGTTTCATATCTTGTTTTCTCTTGCGTTTTATAGTTTATATTAAAAGTCAAGTTGGTAGGATTTGAACTCTAGTCTCTAGTTAATTGGGGTACCAAATATTTGTCTTCTGGTATCACAATGGACTGTGGGTTGTTAAACAATTTCCTCCTGTTAAGTTTGCATTGTTCTGTTTGTGCTACTACTTAAATTTCTGCTTTCATAATCCTATCGCTTGGAAATATTTAAAATGTTTTCAATTATTCGTTTCCTTTGCAGTTATGCTACTTACGGACCTGAGTATGTCTACCCGCAGGTATCACTGTTGGTATATTTACTTATGTCTGCAATTTTGTGTTTGAAGGGTGGATTTGGAAGTAGGGAAGGGTGATACGATGGGTATCCTTAGAAATTTCTCAAGCTTTTTGATAGTCCTAGCATAATATGCTCAGTGGTTTTGATTTTCTGTGTCTTGTATCCTTTGTCTAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGAGTGCCTGGGTCAGCAAGCCCTACAATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGTTATGGTGCAGTACATGGATATGCGATGCCAAGTCCTCAGATTTTGCAGTTTAGTGGTCCTAATGTTAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGTATTCTGCTTTGTATGATGATTACTCTTGATTACAACATTGAGCAATGTGAATTTTGACTAGTTTTTTAGGCATTTTTCCTTGAATTTCTTATTTTGTTATCATCAATTGGATAATCTTCTGTGTATTTGTGTTATCTTTTTTAGTTTCTCCACTGGTTTGGTCCTTCCGTCTTTTTCTCGAGGCCATTTCCTTTTCCTTCTATCATTTAATCTTTTGGATGTGCCTTTTTTAATCTTTTTAAAGAAAAACTGGTAAACTTGTGTTCAATCATTTTATTGACTTAGTTATGTGATAATAGTACTCTGAAGGTTAAAAAAGTGAGTGGCACCATCCAGTCAAAACAGTGCGATAATGGACTTAAGACTGGATATTTTACGGGGACAGTGAAGATTTGCTTTTTTTTTTGGTTGAAAACTTTTTTCATTCTAAAGGAATGAAAGTGCAAGTTTACAACAGAAGGGGAAGCCATTCATGGGGATATTGAAATTTGTGCTATATTTTTTATCATCTGATGTAGAATGGGGAAAACTAAAATAATATGGTTGGCATGTGAAGACATGCTTGATTAGAAAAACATGTTTGTATCATCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGA

mRNA sequence

ATGGCTTATCAGCATGGTCCGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCCTGAACTCTCCTTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCATGGGAGACTCAGAGCGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTTGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGTGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTAGCTTCACTTGGCCGGCCTCGCCCACCTTTATCTTATGGAACAGGACGTTTAAGACAGCCTGCAGTTTATGTTGGAGGGATGCAACCCAACAGGGGAACTTATATTGGAAATTTTGGCTATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGTTATGCTACTTACGGACCTGAGTATGTCTACCCGCAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGAGTGCCTGGGTCAGCAAGCCCTACAATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGTTATGGTGCAGTACATGGATATGCGATGCCAAGTCCTCAGATTTTGCAGTTTAGTGGTCCTAATGTTAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGA

Coding sequence (CDS)

ATGGCTTATCAGCATGGTCCGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCCTGAACTCTCCTTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCATGGGAGACTCAGAGCGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTTGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGTGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTAGCTTCACTTGGCCGGCCTCGCCCACCTTTATCTTATGGAACAGGACGTTTAAGACAGCCTGCAGTTTATGTTGGAGGGATGCAACCCAACAGGGGAACTTATATTGGAAATTTTGGCTATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGTTATGCTACTTACGGACCTGAGTATGTCTACCCGCAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGAGTGCCTGGGTCAGCAAGCCCTACAATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGTTATGGTGCAGTACATGGATATGCGATGCCAAGTCCTCAGATTTTGCAGTTTAGTGGTCCTAATGTTAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGA
Homology
[Close]
BLAST of CSPI06G20930 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.8e-29
Identity = 101/268 (37.69%), Postives = 130/268 (48.51%), Query Frame = 1 

Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           ++S  +N  FGDT  TKVFVGGLAW+T  E M  +F ++G+ILEAV+I+DK T RSKGYG
Sbjct: 2   TTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYG 61

Query: 77  FVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPN 136
           FVTF+D ++A RAC D TPII+GRRANCNLASLG          GRLR+         P 
Sbjct: 62  FVTFKDAKAATRACEDSTPIINGRRANCNLASLG----------GRLRKSPTMT---SPQ 121

Query: 137 RGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQ---IYGV 196
           +G   GN               A PP  +     ++ YP G  N    QQ  Q    YG 
Sbjct: 122 QGPKNGN--------------RATPP--HVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY 181

Query: 197 PGS-ASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIL---------QFSGPNVNALTS 256
           P +  +P +    ++G    GG      +    P PQ            + G  V    +
Sbjct: 182 PSAYVAPNMTFNQKVGYV--GGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAA 238

Query: 257 SPMPTIQAPYP------SGIPAPVAAQP 266
           SPM      YP       G P P  ++P
Sbjct: 242 SPMVPFYTVYPYHQSQAIGFPQPSFSKP 238

[Close]
BLAST of CSPI06G20930 vs. Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.8e-29
Identity = 84/217 (38.71%), Postives = 103/217 (47.47%), Query Frame = 1 

Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPNRGTYIGNFGYQ 147
           RAC DP PIIDGR+AN NLA LG           R+ QP    G  Q +       FG  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG--------AKPRIMQPGFAFGVQQIHPALIQRPFGI- 126

Query: 148 QPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQL 207
            P  Y Y Q    P        P        Y  +    Y Q      +A+   Y Y   
Sbjct: 127 -PAHYVYPQAYVQPGVVIPHVQPTAATSTSPYIDYTSAAYAQYSAAAAAAAYDQYPYA-- 186

Query: 208 GQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSS 245
               P   GY    GY    PQ L  + P   A  ++
Sbjct: 187 --ASPAATGYVTAAGYGYAVPQPLTAAAPGSAAAAAA 209

[Close]
BLAST of CSPI06G20930 vs. Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.4e-28
Identity = 87/222 (39.19%), Postives = 107/222 (48.20%), Query Frame = 1 

Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPNRGTYIGNFGYQ 147
           RAC DP PIIDGR+AN NLA LG           R+ QP    G  Q +       FG  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG--------AKPRIMQPGFAFGVQQLHPALIQRPFGI- 126

Query: 148 QPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYH 207
            P  Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A+     
Sbjct: 127 -PAHYVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAA 186

Query: 208 YGQLGQTV-PGGHGYGAVHGYAMPSPQILQFSGPNVNALTSS 245
           Y Q      P   GY    GY     Q +  + P   A  ++
Sbjct: 187 YDQYPYAASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAA 214

[Close]
BLAST of CSPI06G20930 vs. Swiss-Prot
Match: RBM24_MOUSE (RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.0e-28
Identity = 86/222 (38.74%), Postives = 108/222 (48.65%), Query Frame = 1 

Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPNRGTYIGNFGYQ 147
           RAC DP PIIDGR+AN NLA LG           R+ QP    G  Q +       FG  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG--------AKPRIMQPGFAFGVQQLHPALIQRPFGI- 126

Query: 148 QPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYH 207
            P  Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A+     
Sbjct: 127 -PAHYVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAA 186

Query: 208 YGQLGQTV-PGGHGYGAVHGYAMPSPQILQFSGPNVNALTSS 245
           Y Q      P   GY    GY+    Q +  + P   A  ++
Sbjct: 187 YDQYPYAASPAAAGYVTTGGYSYAVQQPITAAAPGTAAAAAA 214

[Close]
BLAST of CSPI06G20930 vs. Swiss-Prot
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-27
Identity = 84/221 (38.01%), Postives = 104/221 (47.06%), Query Frame = 1 

Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAR 87
           DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPNRGTYIGNFGYQ 147
           RAC DP PIIDGR+AN NLA LG           R+ QP    G  Q +       FG  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG--------AKPRIMQPGFAFGVQQLHPALIQRPFGI- 126

Query: 148 QPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYH 207
            P  Y Y Q    P    P+           P  GY      QY        SA+   Y 
Sbjct: 127 -PAHYVYPQAFVQPGVVIPHVQPAAAAASTTPYIGYTGAAYAQY--------SAAAAAYE 186

Query: 208 YGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSS 245
                 +     GY A  GY     Q +  + P   A  ++
Sbjct: 187 QYPYAASPAAAAGYVAAGGYGYAVQQPITAAAPGTAAAAAA 209

[Close]
BLAST of CSPI06G20930 vs. TrEMBL
Match: A0A0A0KHA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401470 PE=4 SV=1)

HSP 1 Score: 568.9 bits (1465), Expect = 3.4e-159
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 1 

Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 278
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 277

[Close]
BLAST of CSPI06G20930 vs. TrEMBL
Match: A0A061FMY5_THECC (RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 OS=Theobroma cacao GN=TCM_034819 PE=4 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 2.7e-124
Identity = 225/288 (78.12%), Postives = 248/288 (86.11%), Query Frame = 1 

Query: 1   MAYQHGPGPSSISGSSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI 60
           MAYQ  PGPSS  GSSSSSGF  +NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI
Sbjct: 1   MAYQPIPGPSS--GSSSSSGFQYINSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI 60

Query: 61  LEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSY 120
           LEAVVITDKNTGRSKGYGFVTFRDPE+ARRACADPTPIIDGRRANCNLASLGRPRPP+ Y
Sbjct: 61  LEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPVPY 120

Query: 121 GTGRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGG 180
           G  RLR  + Y+GG+Q  RG Y+G+FGYQ P+SY+YQQGL YP YGY TYG EY+YPQG 
Sbjct: 121 G--RLRPASPYIGGVQATRGAYVGSFGYQPPLSYSYQQGLMYPSYGYPTYGHEYLYPQGV 180

Query: 181 YNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNV 240
           YNP+  QQYLQIYGVPGSA   +Y YGQLGQTVP GHGY AV GYA+PS QI+QF GP+ 
Sbjct: 181 YNPYAAQQYLQIYGVPGSAGTALYPYGQLGQTVPSGHGYSAVQGYALPSHQIVQFGGPSA 240

Query: 241 NALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           NA+T+S MPTIQ PYP G+  PV AQPQF+V +PSQF+QGSGSDQT+G
Sbjct: 241 NAITTSAMPTIQTPYPGGMATPVPAQPQFIVTTPSQFMQGSGSDQTTG 284

[Close]
BLAST of CSPI06G20930 vs. TrEMBL
Match: W9R6Z7_9ROSA (RNA-binding protein 24 OS=Morus notabilis GN=L484_024805 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 4.4e-122
Identity = 219/289 (75.78%), Postives = 246/289 (85.12%), Query Frame = 1 

Query: 1   MAYQHGPGPSSISGSSSSSG---FLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGE 60
           MAY H   P   SGSSSSSG   FLNSPFGDTTYTKVFVGGLAWETQS+TMRRYFEQFGE
Sbjct: 1   MAYHHQQVPGPSSGSSSSSGYHQFLNSPFGDTTYTKVFVGGLAWETQSDTMRRYFEQFGE 60

Query: 61  ILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLS 120
           ILEAVVITDKNTGRSKGYGFVTFR+PE+ARRACADP P+IDGRRANCNLASLGRPRPP+ 
Sbjct: 61  ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPAPVIDGRRANCNLASLGRPRPPMP 120

Query: 121 YGTGRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQG 180
           YG  R   P  YVG +Q  RGTY+GNFGYQQP+SY YQ GL YP YGY TYGP+YVYPQG
Sbjct: 121 YGRPRPATP--YVGNVQSARGTYVGNFGYQQPLSYGYQ-GLMYPQYGYTTYGPDYVYPQG 180

Query: 181 GYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPN 240
           GYNP+ GQQYLQIYG+PG+ +  +Y YGQ+ QT+P G GY A+HGYAMP  QI+QF GP+
Sbjct: 181 GYNPYTGQQYLQIYGLPGTVNTAMYPYGQVSQTLPSGQGYTAMHGYAMPGHQIVQFGGPS 240

Query: 241 VNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           VNALT+SPMPTIQ+PYP+G+ APV AQPQF+V +PSQ+VQG GSDQT+G
Sbjct: 241 VNALTTSPMPTIQSPYPTGMAAPVMAQPQFIVPAPSQYVQGGGSDQTTG 286

[Close]
BLAST of CSPI06G20930 vs. TrEMBL
Match: A0A067KKX2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08033 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 4.4e-122
Identity = 225/289 (77.85%), Postives = 247/289 (85.47%), Query Frame = 1 

Query: 1   MAYQHGPGPSSISGSSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI 60
           MAYQ  PGPSS  GSSSSSGF  LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI
Sbjct: 1   MAYQPIPGPSS--GSSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI 60

Query: 61  LEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSY 120
           LEAVVITDKNTGRSKGYGFVTFR+PESA+RACADPTPIIDGRRANCNLASLGRPRPPL Y
Sbjct: 61  LEAVVITDKNTGRSKGYGFVTFREPESAKRACADPTPIIDGRRANCNLASLGRPRPPLPY 120

Query: 121 GTGRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGG 180
           G  RLR    Y+  +Q  RGTY+G+FGYQQP+SY YQQGL Y PYGYA YGPEYVYPQG 
Sbjct: 121 G--RLRPATPYIASVQNPRGTYVGSFGYQQPLSYNYQQGLMYHPYGYAAYGPEYVYPQGV 180

Query: 181 YNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNV 240
           YNP+ GQ YLQIYGVPG+ +  +Y YGQLGQT+PGGHGY  V GYAMP  QI+QF GP+V
Sbjct: 181 YNPYAGQPYLQIYGVPGAVNTAMYPYGQLGQTLPGGHGYSTVQGYAMPGHQIVQFGGPSV 240

Query: 241 NALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPS-QFVQGSGSDQTSG 287
           N +T+SPM TIQ PYP+GI APV AQP F+V +PS Q++QGSGSDQT+G
Sbjct: 241 NPITTSPMATIQTPYPTGIAAPVPAQPPFIVPAPSPQYMQGSGSDQTAG 285

[Close]
BLAST of CSPI06G20930 vs. TrEMBL
Match: F6I6W0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00660 PE=4 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 4.8e-121
Identity = 222/288 (77.08%), Postives = 242/288 (84.03%), Query Frame = 1 

Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQ  PGPSS S SSS   FLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQPIPGPSSGSSSSSGFQFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRAC DP PIIDGRRANCNLASLGRPRP +SYG 
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACLDPAPIIDGRRANCNLASLGRPRPSMSYG- 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
            RLR    Y+G +   RG+Y+GNFGYQQPVSY+YQQG  YP YGYA YGPEYVYPQG YN
Sbjct: 121 -RLRPVTPYLGSVPATRGSYVGNFGYQQPVSYSYQQGFMYPSYGYAAYGPEYVYPQGVYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           P+ GQQYLQIYGVPG+ +  IY YGQLGQT+P  HGY  V GYAMP  Q +QF G +VNA
Sbjct: 181 PYPGQQYLQIYGVPGTVNTAIYPYGQLGQTLPSSHGYTTVQGYAMPGHQFMQFGGSSVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVV--HSPSQFVQGSGSDQTSG 287
           +++SP+PTIQAPYP+GI APV AQPQF+V  HSP QF+QGSG DQT+G
Sbjct: 241 ISTSPIPTIQAPYPTGIAAPVPAQPQFIVPAHSP-QFIQGSGPDQTTG 285

[Close]
BLAST of CSPI06G20930 vs. TAIR10
Match: AT1G76460.1 (AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 379.0 bits (972), Expect = 2.5e-105
Identity = 191/292 (65.41%), Postives = 224/292 (76.71%), Query Frame = 1 

Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQ  PG        S   +LNSPFGDTT+TKVFVGGLAWETQSET+R++FEQ+GEILE
Sbjct: 1   MAYQPVPG--------SGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVI DKNTGRSKGYGFVTFRDPE+ARRACADPTPIIDGRRANCNLASLGRPRPPL Y  
Sbjct: 61  AVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAV 120

Query: 121 -----GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY- 180
                GRLR  + Y+G +Q  RG+ IGN+ YQQP+ Y YQQG+ Y PYG   YGPEY+Y 
Sbjct: 121 IPNMPGRLRPASPYIGNVQGPRGSLIGNYPYQQPLPYNYQQGVVY-PYGVTAYGPEYMYS 180

Query: 181 -PQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQF 240
             QG Y+P++GQQYLQ+YGVPG+ +  +Y YGQL QT+P GHGY AV GY++P   ILQ 
Sbjct: 181 QSQGLYSPYMGQQYLQVYGVPGAVNSPVYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQL 240

Query: 241 SGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTS 286
            GP V+ +T+S MP +QAPYPSGIP P   Q   +VHSP QF+Q + SDQT+
Sbjct: 241 GGPTVSTMTTSSMPALQAPYPSGIPGPAPVQSHIIVHSP-QFMQSTASDQTT 282

[Close]
BLAST of CSPI06G20930 vs. TAIR10
Match: AT1G20880.1 (AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 330.5 bits (846), Expect = 1.0e-90
Identity = 173/281 (61.57%), Postives = 207/281 (73.67%), Query Frame = 1 

Query: 15  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRS 74
           S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRS
Sbjct: 5   SIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRS 64

Query: 75  KGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT-----GRLRQPA 134
           KGYGFVTFRDPE+ARRAC DPTPIIDGRRANCNLASLGR RPP+ Y       GR+R P+
Sbjct: 65  KGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPS 124

Query: 135 VYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQ 194
            YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   QG Y P++GQ
Sbjct: 125 PYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYGPYMGQ 184

Query: 195 QYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSP 254
           QYLQ+YGVPG+ +   Y YGQL  T+PG HGY A  GY+ P   +LQ          +SP
Sbjct: 185 QYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLG-------ATSP 244

Query: 255 MPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           M  IQ+PYPS  P+    Q + +V +P Q++Q SGSDQT+G
Sbjct: 245 MSAIQSPYPS--PSAPTHQ-RVIVQTPPQYIQSSGSDQTTG 274

[Close]
BLAST of CSPI06G20930 vs. TAIR10
Match: AT1G22330.1 (AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-49
Identity = 127/278 (45.68%), Postives = 162/278 (58.27%), Query Frame = 1 

Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           S++ +  SPFGDTT+TKVFVGGLAWET ++ MRRYF+QFGEILEAV+ITDK TG+SKGYG
Sbjct: 2   SNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61

Query: 77  FVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPN 136
           FVTFRD +SA RA ADP P+IDGR+ANCN+AS GRPRP    G G+   P+ Y GG Q +
Sbjct: 62  FVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQSS 121

Query: 137 RGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQ-QYL--QIYGV 196
                   G   PV  A    L YP YGY TY  EY Y Q  YN  + Q QY   Q+YG 
Sbjct: 122 ------YTGMAAPVQQAAAAQLMYPSYGY-TYNSEYGYHQALYNAQLQQAQYYQQQMYGG 181

Query: 197 PGSASPTI-------YHYGQLGQTVPG-GHGYGAVHGYAMPSPQILQFSGPNVNALTSSP 256
            G+ SP+        Y+Y Q     P   H     + +     Q  Q   P+ ++    P
Sbjct: 182 GGATSPSSSNIMPSPYYYLQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRLPSASSYLIYP 241

Query: 257 MPTIQAPYPSGIP---APVAAQPQFVVHSPSQFVQGSG 281
              ++AP PS +P    P+++  +   H+P Q  +  G
Sbjct: 242 -SNVEAPTPSNVPTSQGPLSSSTE--SHAPQQVSEEGG 269

[Close]
BLAST of CSPI06G20930 vs. TAIR10
Match: AT1G78260.1 (AT1G78260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 188.0 bits (476), Expect = 8.3e-48
Identity = 126/266 (47.37%), Postives = 151/266 (56.77%), Query Frame = 1 

Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
           S + +  SPFGDTTYTKVFVGGLAWET ++ MRRYFEQFGEILEAV+ITDKNTG+SKGYG
Sbjct: 2   SQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG 61

Query: 77  FVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGTGRLRQPAVYVGGMQPN 136
           FVTFR+ +SA RA ADP P+IDGR+ANCN+AS GRPRP    G G+   P+ Y  G    
Sbjct: 62  FVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---G 121

Query: 137 RGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGP-EYVYPQGGYNPFVG-----QQYLQI 196
             TY    G   P+  A    L YP YGY TY P ++ Y Q  YN  +      QQ  Q+
Sbjct: 122 PSTYT---GMAAPLPPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQL 181

Query: 197 YG----VPGSASPTI----YHYGQLGQT--VPGGHGYGAVHGYAMPSPQILQFSGPN--V 256
           YG     P S+  TI    Y+YG   Q   VP  H +     Y        +FS P+  V
Sbjct: 182 YGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLV 241

Query: 257 NALTSSPMPTIQAPYPSGIPAPVAAQ 265
               SS  P +Q    S   +    Q
Sbjct: 242 YPSNSSFAPPLQGVLSSSTESEAVPQ 260

[Close]
BLAST of CSPI06G20930 vs. TAIR10
Match: AT2G46780.1 (AT2G46780.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 181.4 bits (459), Expect = 7.8e-46
Identity = 120/277 (43.32%), Postives = 152/277 (54.87%), Query Frame = 1 

Query: 23  NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRD 82
           N+   DT  TK+FVGGLAWETQ +TMRRYFEQFGEI+EAVVITDKNTGRSKGYGFVTF++
Sbjct: 13  NNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKE 72

Query: 83  PESARRACADPTPIIDGRRANCNLASLG--RPRPPLS--YGTGRLRQPAVYVGGMQPN-- 142
            E+A RAC +  P+IDGRRANCNLA LG  +PRPP S  +GTGR R P   VG + P+  
Sbjct: 73  AEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRFRSPGSGVGLVAPSPQ 132

Query: 143 -RGTYIGN-FGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNP--FVGQQYLQIYG 202
            RG+   + F +QQ   +  Q    Y  YG++ Y  E +YP   YN   + GQQ+    G
Sbjct: 133 FRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPMNYYNHHLYGGQQFSPYMG 192

Query: 203 VPGSASPTIYH--------------YGQLGQTVPGGHGYGAVHGY-AMPSPQILQ----- 262
            P + S  ++H                Q    V   H  G    Y A P+P +LQ     
Sbjct: 193 HPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQHHQGFSFQYTAPPAPPLLQYPYLP 252

Query: 263 ----FSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQP 266
               FS     +    P P +  P    +  P ++ P
Sbjct: 253 HQPHFSSQQQFSSQQPPPPILSLPTSLALSLPSSSSP 289

[Close]
BLAST of CSPI06G20930 vs. NCBI nr
Match: gi|449458055|ref|XP_004146763.1| (PREDICTED: RNA-binding protein 24-A [Cucumis sativus])

HSP 1 Score: 586.3 bits (1510), Expect = 3.0e-164
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 1 

Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]
BLAST of CSPI06G20930 vs. NCBI nr
Match: gi|659129704|ref|XP_008464801.1| (PREDICTED: RNA-binding protein 24-A [Cucumis melo])

HSP 1 Score: 583.9 bits (1504), Expect = 1.5e-163
Identity = 284/286 (99.30%), Postives = 286/286 (100.00%), Query Frame = 1 

Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPP+S+GT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]
BLAST of CSPI06G20930 vs. NCBI nr
Match: gi|700192573|gb|KGN47777.1| (hypothetical protein Csa_6G401470 [Cucumis sativus])

HSP 1 Score: 568.9 bits (1465), Expect = 4.9e-159
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 1 

Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120
           AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 278
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 277

[Close]
BLAST of CSPI06G20930 vs. NCBI nr
Match: gi|590597624|ref|XP_007018664.1| (RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 453.0 bits (1164), Expect = 3.9e-124
Identity = 225/288 (78.12%), Postives = 248/288 (86.11%), Query Frame = 1 

Query: 1   MAYQHGPGPSSISGSSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI 60
           MAYQ  PGPSS  GSSSSSGF  +NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI
Sbjct: 1   MAYQPIPGPSS--GSSSSSGFQYINSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI 60

Query: 61  LEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSY 120
           LEAVVITDKNTGRSKGYGFVTFRDPE+ARRACADPTPIIDGRRANCNLASLGRPRPP+ Y
Sbjct: 61  LEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPVPY 120

Query: 121 GTGRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGG 180
           G  RLR  + Y+GG+Q  RG Y+G+FGYQ P+SY+YQQGL YP YGY TYG EY+YPQG 
Sbjct: 121 G--RLRPASPYIGGVQATRGAYVGSFGYQPPLSYSYQQGLMYPSYGYPTYGHEYLYPQGV 180

Query: 181 YNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNV 240
           YNP+  QQYLQIYGVPGSA   +Y YGQLGQTVP GHGY AV GYA+PS QI+QF GP+ 
Sbjct: 181 YNPYAAQQYLQIYGVPGSAGTALYPYGQLGQTVPSGHGYSAVQGYALPSHQIVQFGGPSA 240

Query: 241 NALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 287
           NA+T+S MPTIQ PYP G+  PV AQPQF+V +PSQF+QGSGSDQT+G
Sbjct: 241 NAITTSAMPTIQTPYPGGMATPVPAQPQFIVTTPSQFMQGSGSDQTTG 284

[Close]
BLAST of CSPI06G20930 vs. NCBI nr
Match: gi|802604341|ref|XP_012073568.1| (PREDICTED: RNA-binding protein 24-A [Jatropha curcas])

HSP 1 Score: 445.7 bits (1145), Expect = 6.3e-122
Identity = 225/289 (77.85%), Postives = 247/289 (85.47%), Query Frame = 1 

Query: 1   MAYQHGPGPSSISGSSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI 60
           MAYQ  PGPSS  GSSSSSGF  LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI
Sbjct: 1   MAYQPIPGPSS--GSSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEI 60

Query: 61  LEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSY 120
           LEAVVITDKNTGRSKGYGFVTFR+PESA+RACADPTPIIDGRRANCNLASLGRPRPPL Y
Sbjct: 61  LEAVVITDKNTGRSKGYGFVTFREPESAKRACADPTPIIDGRRANCNLASLGRPRPPLPY 120

Query: 121 GTGRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGG 180
           G  RLR    Y+  +Q  RGTY+G+FGYQQP+SY YQQGL Y PYGYA YGPEYVYPQG 
Sbjct: 121 G--RLRPATPYIASVQNPRGTYVGSFGYQQPLSYNYQQGLMYHPYGYAAYGPEYVYPQGV 180

Query: 181 YNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNV 240
           YNP+ GQ YLQIYGVPG+ +  +Y YGQLGQT+PGGHGY  V GYAMP  QI+QF GP+V
Sbjct: 181 YNPYAGQPYLQIYGVPGAVNTAMYPYGQLGQTLPGGHGYSTVQGYAMPGHQIVQFGGPSV 240

Query: 241 NALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPS-QFVQGSGSDQTSG 287
           N +T+SPM TIQ PYP+GI APV AQP F+V +PS Q++QGSGSDQT+G
Sbjct: 241 NPITTSPMATIQTPYPTGIAAPVPAQPPFIVPAPSPQYMQGSGSDQTAG 285

The following BLAST results are available for this feature:
BLAST of CSPI06G20930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ARP1_ARATH4.8e-2937.69Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1[more]
RB24A_XENLA4.8e-2938.71RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1[more]
RBM24_HUMAN2.4e-2839.19RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1[more]
RBM24_MOUSE4.0e-2838.74RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1[more]
RBM24_CHICK1.5e-2738.01RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2[more]
BLAST of CSPI06G20930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHA9_CUCSA3.4e-159100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401470 PE=4 SV=1[more]
A0A061FMY5_THECC2.7e-12478.13RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 OS=Theobroma cacao GN=... [more]
W9R6Z7_9ROSA4.4e-12275.78RNA-binding protein 24 OS=Morus notabilis GN=L484_024805 PE=4 SV=1[more]
A0A067KKX2_JATCU4.4e-12277.85Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08033 PE=4 SV=1[more]
F6I6W0_VITVI4.8e-12177.08Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00660 PE=4 SV=... [more]
BLAST of CSPI06G20930 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G76460.12.5e-10565.41 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G20880.11.0e-9061.57 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G22330.11.2e-4945.68 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G78260.18.3e-4847.37 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G46780.17.8e-4643.32 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CSPI06G20930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458055|ref|XP_004146763.1|3.0e-164100.00PREDICTED: RNA-binding protein 24-A [Cucumis sativus][more]
gi|659129704|ref|XP_008464801.1|1.5e-16399.30PREDICTED: RNA-binding protein 24-A [Cucumis melo][more]
gi|700192573|gb|KGN47777.1|4.9e-159100.00hypothetical protein Csa_6G401470 [Cucumis sativus][more]
gi|590597624|ref|XP_007018664.1|3.9e-12478.13RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 [Theobroma cacao][more]
gi|802604341|ref|XP_012073568.1|6.3e-12277.85PREDICTED: RNA-binding protein 24-A [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G20930.1CSPI06G20930.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 34..90
score: 2.4
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 33..105
score: 1.8
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 32..109
score: 17
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 24..118
score: 4.4
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 31..147
score: 2.28
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 226..255
score: 8.2E-42coord: 28..113
score: 8.2
NoneNo IPR availablePANTHERPTHR24012:SF421SUBFAMILY NOT NAMEDcoord: 226..255
score: 8.2E-42coord: 28..113
score: 8.2