Cp4.1LG11g06700 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g06700
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRibosomal RNA processing protein 1 like
LocationCp4.1LG11 : 4264446 .. 4266218 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGGTGGTTGAAGGAGATCAATATTTTGTTTCTTTGGTCAAGCTTTTGGCGTCCTCCAACAAGGCGACTCGAGACAAGACCCTCCGTGTAATCATCAAGACATGGCTTCCGACTCAAACGAGCCTCTCCGATGGCGATATGAAGAAGCTTTGGAAGGGTTTGTTCTACTGTGTTTGGCATGCGGACAAGGCTCCTGTTCAATCTGAGCTTATTAATCGTCTCGCTTCCCTGCTTCTCCATCTCGACCTTCCGCTAGCTGTTCAATACTTCTCTGTTTTTCTTCTCACCATGCGTCGTGAATGGGCCGGCATTGATGCGCTCAGGTTAGATAAGTTTTACCTTTTGATTCGTAGATTTTTGCACCAGTTTTTTGCTTTGTTGAAGAAGCATTCTTGGGATTTGGAACTATGTCGTCGTTCGGTTCAAGTTTTGGAAGAAAGGGTTTTTTTCACTGATGATAAGTTTCCTGGGAGTGGTGTTAATTACCAAATTGCTTCTGTGTTTCTTGAGGAACTTAGGCCGTTTCTTCCTCTTCAGAAGGAAGTTATTGATATTCTGTTCAAGCCATTCATTTATTCCATGGCTAAGCTGTCAGATAAAGTGTTGTTGGGAAAAATTAAGTCTAATCTTTTTGATGTGATTCTAAAAATGGGGAAGCAATTACTTGAGCGTCGAAAATGTGGAGAGGATGTTGATTCTGGTGATGATATGGTTGTGTTGGGTTCAATTTCATTGACAAATTTGTTCTCAACTACATTTTATGAATTGGGTTCTTCACCTGATTGCTGTCAAGGGAATAGAAAGGTACTGTTTGCCATGCATGAAGAGTATCAGAAGTTGGAGAAAGATATTATCTCATCGGGGATTGAGATTTCGTTTCCAGATCTTCAAGAACAAGACGTGGATGAAGTGCCTACTTTAGTTCCTGTTTCCAGTGAAGGAGAGGCACCTTCAGAAATTTCCGCTGTTGATGTTGACATCACTGCTGAATCCACTGATAAGGCACATAAAAAGAAAAAGAAGAATAAAAAGGCCACTCCTTCAGAAATTTCCATGCTTGATGTTGATCTTACTGCTGAATCCACTGACAAGCCACTTAAAAAGCAAAAGAAGAATAAAAAGGCCACTGATGGCAGTGGCAAGAAGAAAACAAAGAAGACCACAAACGGTAGTTCTGATCTTGTTTCTGAAAATACTACTGTGAATAAGGACAATGAGAATATAGTTGCTTCTAACGGTGAGAATTCTAATAATGAACAGATTAGTGATGGAAATATGATAGCCTTGGATGAATCTGTGATATCAAACCTTCAGATTCAATTTGAGAGGGTTGCTTCTGAAGCTGATTTTGGAGACAATCTTTTGAGCCCTGTAATATCAACCAATGGCTCGGTCAAGAAAAGAAAGAGAGCAAAGAATGTTGATGGGCTGCAGAAACATGATGTAGTACTTCCTAGCGAAGTAGACGCTGAAGGAAATACGGCTGTGAAAAGTGGAGAGAAGAGTGTTAAGAAGGTAAGGTTTTCCATGAAAAATAACTTGGTATGGAAACCCCATAATCCCTTACCACCTGAAAGTTTGAGACTGCCTCCCTCTGTTACTCCAAGGGGAAGTGCACTTAAGAAAGGAATACCTCCAGGTCCTATCTTGGAATTCCCTGCCACAGCTAAAAGGACAAAAAGGAGAGCTGTTGCAATGAGGGCTAAGAAAGGTGTAAGAAGCTTGCCTGTCAAACGTGTGAAGAAATTGAAATCTAAGAGTACTTAG

mRNA sequence

ATGGAGGAGGTGGTTGAAGGAGATCAATATTTTGTTTCTTTGGTCAAGCTTTTGGCGTCCTCCAACAAGGCGACTCGAGACAAGACCCTCCGTGTAATCATCAAGACATGGCTTCCGACTCAAACGAGCCTCTCCGATGGCGATATGAAGAAGCTTTGGAAGGGTTTGTTCTACTGTGTTTGGCATGCGGACAAGGCTCCTGTTCAATCTGAGCTTATTAATCGTCTCGCTTCCCTGCTTCTCCATCTCGACCTTCCGCTAGCTGTTCAATACTTCTCTGTTTTTCTTCTCACCATGCGTCGTGAATGGGCCGGCATTGATGCGCTCAGGTTAGATAAGTTTTACCTTTTGATTCGTAGATTTTTGCACCAGTTTTTTGCTTTGTTGAAGAAGCATTCTTGGGATTTGGAACTATGTCGTCGTTCGGTTCAAGTTTTGGAAGAAAGGGTTTTTTTCACTGATGATAAGTTTCCTGGGAGTGGTGTTAATTACCAAATTGCTTCTGTGTTTCTTGAGGAACTTAGGCCGTTTCTTCCTCTTCAGAAGGAAGTTATTGATATTCTGTTCAAGCCATTCATTTATTCCATGGCTAAGCTGTCAGATAAAGTGTTGTTGGGAAAAATTAAGTCTAATCTTTTTGATGTGATTCTAAAAATGGGGAAGCAATTACTTGAGCGTCGAAAATGTGGAGAGGATGTTGATTCTGGTGATGATATGGTTGTGTTGGGTTCAATTTCATTGACAAATTTGTTCTCAACTACATTTTATGAATTGGGTTCTTCACCTGATTGCTGTCAAGGGAATAGAAAGGTACTGTTTGCCATGCATGAAGAGTATCAGAAGTTGGAGAAAGATATTATCTCATCGGGGATTGAGATTTCGTTTCCAGATCTTCAAGAACAAGACGTGGATGAAGTGCCTACTTTAGTTCCTGTTTCCAGTGAAGGAGAGGCACCTTCAGAAATTTCCGCTGTTGATGTTGACATCACTGCTGAATCCACTGATAAGGCACATAAAAAGAAAAAGAAGAATAAAAAGGCCACTCCTTCAGAAATTTCCATGCTTGATGTTGATCTTACTGCTGAATCCACTGACAAGCCACTTAAAAAGCAAAAGAAGAATAAAAAGGCCACTGATGGCAGTGGCAAGAAGAAAACAAAGAAGACCACAAACGGTAGTTCTGATCTTGTTTCTGAAAATACTACTGTGAATAAGGACAATGAGAATATAGTTGCTTCTAACGGTGAGAATTCTAATAATGAACAGATTAGTGATGGAAATATGATAGCCTTGGATGAATCTGTGATATCAAACCTTCAGATTCAATTTGAGAGGGTTGCTTCTGAAGCTGATTTTGGAGACAATCTTTTGAGCCCTGTAATATCAACCAATGGCTCGGTCAAGAAAAGAAAGAGAGCAAAGAATGTTGATGGGCTGCAGAAACATGATGTAGTACTTCCTAGCGAAGTAGACGCTGAAGGAAATACGGCTGTGAAAAGTGGAGAGAAGAGTGTTAAGAAGGTAAGGTTTTCCATGAAAAATAACTTGGTATGGAAACCCCATAATCCCTTACCACCTGAAAGTTTGAGACTGCCTCCCTCTGTTACTCCAAGGGGAAGTGCACTTAAGAAAGGAATACCTCCAGGTCCTATCTTGGAATTCCCTGCCACAGCTAAAAGGACAAAAAGGAGAGCTGTTGCAATGAGGGCTAAGAAAGGTGTAAGAAGCTTGCCTGTCAAACGTGTGAAGAAATTGAAATCTAAGAGTACTTAG

Coding sequence (CDS)

ATGGAGGAGGTGGTTGAAGGAGATCAATATTTTGTTTCTTTGGTCAAGCTTTTGGCGTCCTCCAACAAGGCGACTCGAGACAAGACCCTCCGTGTAATCATCAAGACATGGCTTCCGACTCAAACGAGCCTCTCCGATGGCGATATGAAGAAGCTTTGGAAGGGTTTGTTCTACTGTGTTTGGCATGCGGACAAGGCTCCTGTTCAATCTGAGCTTATTAATCGTCTCGCTTCCCTGCTTCTCCATCTCGACCTTCCGCTAGCTGTTCAATACTTCTCTGTTTTTCTTCTCACCATGCGTCGTGAATGGGCCGGCATTGATGCGCTCAGGTTAGATAAGTTTTACCTTTTGATTCGTAGATTTTTGCACCAGTTTTTTGCTTTGTTGAAGAAGCATTCTTGGGATTTGGAACTATGTCGTCGTTCGGTTCAAGTTTTGGAAGAAAGGGTTTTTTTCACTGATGATAAGTTTCCTGGGAGTGGTGTTAATTACCAAATTGCTTCTGTGTTTCTTGAGGAACTTAGGCCGTTTCTTCCTCTTCAGAAGGAAGTTATTGATATTCTGTTCAAGCCATTCATTTATTCCATGGCTAAGCTGTCAGATAAAGTGTTGTTGGGAAAAATTAAGTCTAATCTTTTTGATGTGATTCTAAAAATGGGGAAGCAATTACTTGAGCGTCGAAAATGTGGAGAGGATGTTGATTCTGGTGATGATATGGTTGTGTTGGGTTCAATTTCATTGACAAATTTGTTCTCAACTACATTTTATGAATTGGGTTCTTCACCTGATTGCTGTCAAGGGAATAGAAAGGTACTGTTTGCCATGCATGAAGAGTATCAGAAGTTGGAGAAAGATATTATCTCATCGGGGATTGAGATTTCGTTTCCAGATCTTCAAGAACAAGACGTGGATGAAGTGCCTACTTTAGTTCCTGTTTCCAGTGAAGGAGAGGCACCTTCAGAAATTTCCGCTGTTGATGTTGACATCACTGCTGAATCCACTGATAAGGCACATAAAAAGAAAAAGAAGAATAAAAAGGCCACTCCTTCAGAAATTTCCATGCTTGATGTTGATCTTACTGCTGAATCCACTGACAAGCCACTTAAAAAGCAAAAGAAGAATAAAAAGGCCACTGATGGCAGTGGCAAGAAGAAAACAAAGAAGACCACAAACGGTAGTTCTGATCTTGTTTCTGAAAATACTACTGTGAATAAGGACAATGAGAATATAGTTGCTTCTAACGGTGAGAATTCTAATAATGAACAGATTAGTGATGGAAATATGATAGCCTTGGATGAATCTGTGATATCAAACCTTCAGATTCAATTTGAGAGGGTTGCTTCTGAAGCTGATTTTGGAGACAATCTTTTGAGCCCTGTAATATCAACCAATGGCTCGGTCAAGAAAAGAAAGAGAGCAAAGAATGTTGATGGGCTGCAGAAACATGATGTAGTACTTCCTAGCGAAGTAGACGCTGAAGGAAATACGGCTGTGAAAAGTGGAGAGAAGAGTGTTAAGAAGGTAAGGTTTTCCATGAAAAATAACTTGGTATGGAAACCCCATAATCCCTTACCACCTGAAAGTTTGAGACTGCCTCCCTCTGTTACTCCAAGGGGAAGTGCACTTAAGAAAGGAATACCTCCAGGTCCTATCTTGGAATTCCCTGCCACAGCTAAAAGGACAAAAAGGAGAGCTGTTGCAATGAGGGCTAAGAAAGGTGTAAGAAGCTTGCCTGTCAAACGTGTGAAGAAATTGAAATCTAAGAGTACTTAG

Protein sequence

MEEVVEGDQYFVSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCVWHADKAPVQSELINRLASLLLHLDLPLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRRFLHQFFALLKKHSWDLELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPFLPLQKEVIDILFKPFIYSMAKLSDKVLLGKIKSNLFDVILKMGKQLLERRKCGEDVDSGDDMVVLGSISLTNLFSTTFYELGSSPDCCQGNRKVLFAMHEEYQKLEKDIISSGIEISFPDLQEQDVDEVPTLVPVSSEGEAPSEISAVDVDITAESTDKAHKKKKKNKKATPSEISMLDVDLTAESTDKPLKKQKKNKKATDGSGKKKTKKTTNGSSDLVSENTTVNKDNENIVASNGENSNNEQISDGNMIALDESVISNLQIQFERVASEADFGDNLLSPVISTNGSVKKRKRAKNVDGLQKHDVVLPSEVDAEGNTAVKSGEKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILEFPATAKRTKRRAVAMRAKKGVRSLPVKRVKKLKSKST
Homology
[Close]
BLAST of Cp4.1LG11g06700 vs. Swiss-Prot
Match: RRP1B_MOUSE (Ribosomal RNA processing protein 1 homolog B OS=Mus musculus GN=Rrp1b PE=1 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 2.3e-25
Identity = 80/228 (35.09%), Postives = 122/228 (53.51%), Query Frame = 1 

Query: 18  LASSNKATRDKTLRVIIKTWLPTQT-----SLSDGDMKKLWKGLFYCVWHADKAPVQSEL 77
           LASS K  RD+ +R + + +L  +T     S S  ++ K+WKGLFYC+W  D+  +Q EL
Sbjct: 16  LASSEKGVRDRAVRKL-RQYLSARTQSDTGSFSQEELLKIWKGLFYCMWVQDEPLLQEEL 75

Query: 78  INRLASLLLHLDLPLAVQYFSV--FLLTMRREWAGIDALRLDKFYLLIRRFLHQFFALLK 137
            N + S L+H+   L  QY  +  F  TM REW GID L+LDK+Y+LIR  L Q F +LK
Sbjct: 76  AN-IISQLIHVVNSLEAQYLFIQTFWQTMNREWQGIDKLQLDKYYMLIRLVLRQSFEVLK 135

Query: 138 KHSWDLELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPF--LPLQKEVIDIL 197
           +++W+       + +L + +   + + P +GV   +  V+LEEL       L  +    L
Sbjct: 136 RNAWEESQITLFLDILMKEILSPESQSP-NGVRTHLIDVYLEELTTVGGAELLADQNLKL 195

Query: 198 FKPFIYSMAKLSDKVLLGKIKSNLFDVILKMG----KQLLERRKCGED 233
             PF    AK  D  L+  +   +F+VI+       ++ +E RK  ED
Sbjct: 196 IDPFCRIAAKTKDHTLVQTVARGVFEVIVDQSACVPQESVEERKTKED 240

[Close]
BLAST of Cp4.1LG11g06700 vs. Swiss-Prot
Match: RRP1_MOUSE (Ribosomal RNA processing protein 1 homolog A OS=Mus musculus GN=Rrp1 PE=1 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 6.2e-23
Identity = 75/235 (31.91%), Postives = 115/235 (48.94%), Query Frame = 1 

Query: 12  VSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDG-----DMKKLWKGLFYCVWHADKA 71
           + L + LA + + TRD+ LR + K ++  ++  + G     ++ K+WKGLFYC+W  DK 
Sbjct: 11  IQLAQRLAGNEQVTRDRALRKLRK-YIEARSQRATGGFTPDELLKVWKGLFYCMWMQDK- 70

Query: 72  PVQSELINRLASLLLHL--DLPLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRRFLHQ 131
           P+Q E + R  + L+H         Q+   F  TM REW GID LRLDKFY+L+R  L +
Sbjct: 71  PLQQEELGRTIAQLVHAFHTTEAQHQFLKAFWQTMIREWVGIDRLRLDKFYMLMRMVLSE 130

Query: 132 FFALLKKHSWDLELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPFLPLQKEV 191
               +K   WD     + +++L   +   D + P SGV      +FLEEL      +   
Sbjct: 131 SLKAVKARGWDERQIEQLLELLTTEILNPDSQAP-SGVKSHFLEIFLEELAKVGAAELTA 190

Query: 192 IDIL--FKPFIYSMAKLSDKVLLGKIKSNLFDVILKMGKQLLERRKCGEDVDSGD 238
              L    PF    A+  D  +L KI  ++F  I++     +E      D  SG+
Sbjct: 191 DQNLQFIDPFCQIAARTKDSQVLHKIIQSIFQTIVEQAPLAIEDIMNELDTQSGE 242

[Close]
BLAST of Cp4.1LG11g06700 vs. Swiss-Prot
Match: RRP1_HUMAN (Ribosomal RNA processing protein 1 homolog A OS=Homo sapiens GN=RRP1 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.8e-22
Identity = 71/224 (31.70%), Postives = 113/224 (50.45%), Query Frame = 1 

Query: 12  VSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDG-----DMKKLWKGLFYCVWHADKA 71
           + L + LA + + TRD+ +R + K ++  +T  + G     ++ K+WKGLFYC+W  DK 
Sbjct: 11  IQLAQRLAGNEQVTRDRAVRKLRK-YIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 70

Query: 72  PVQSELINRLASLLLHLDLPLAVQ--YFSVFLLTMRREWAGIDALRLDKFYLLIRRFLHQ 131
            +Q EL  R  S L+H       Q  +   F  TM REW GID LRLDKFY+L+R  L++
Sbjct: 71  LLQEEL-GRTISQLVHAFQTTEAQHLFLQAFWQTMNREWTGIDRLRLDKFYMLMRMVLNE 130

Query: 132 FFALLKKHSWDLELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPFLPLQKEV 191
              +LK   W+       +++L   +     + P +GV      +FLEEL   +  ++  
Sbjct: 131 SLKVLKMQGWEERQIEELLELLMTEILHPSSQAP-NGVKSHFIEIFLEELTK-VGAEELT 190

Query: 192 IDILFK---PFIYSMAKLSDKVLLGKIKSNLFDVILKMGKQLLE 226
            D   K   PF    A+  D ++L  I   +F+ I++     +E
Sbjct: 191 ADQNLKFIDPFCRIAARTKDSLVLNNITRGIFETIVEQAPLAIE 230

[Close]
BLAST of Cp4.1LG11g06700 vs. Swiss-Prot
Match: RRP1_SCHPO (Ribosomal RNA-processing protein 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC9B6.07 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-19
Identity = 72/210 (34.29%), Postives = 109/210 (51.90%), Query Frame = 1 

Query: 15  VKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCVWHADKAPVQSELIN 74
           +K LA++++ TRDK L  + + +L  +      D  KLWKGLFYC+W ADK   Q +L +
Sbjct: 8   IKKLAANDRKTRDKALESL-QRFLSQKKKFERLDFLKLWKGLFYCMWMADKPLYQQKLSD 67

Query: 75  RLASLLLHLDLPLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRRFLHQFFALLKKHSW 134
            LA+L+  + +   + + S F  TM REW GID LR DKFYLL+RRF    F  ++  S 
Sbjct: 68  NLAALVPIVWIDNRILFQSTFWETMGREWTGIDILRTDKFYLLMRRFCAAAFRDIQTRSK 127

Query: 135 DL---ELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPFLPLQKEVIDILFKP 194
                ++     Q+  +  F T++    +G+ + +A ++ EELR   P      D  + P
Sbjct: 128 TALLDKVVAEYNQMWMDGPFNTENLAFPNGILFHLADIWTEELRKVYPEDVPKAD-WYLP 187

Query: 195 FIYSMAKLSDKVLLGKIKSNLFDVILKMGK 222
           F  S  K S  V+L K      D + +  K
Sbjct: 188 F-DSTIKSSHNVVLRKTLPKRLDRVSEYTK 214

[Close]
BLAST of Cp4.1LG11g06700 vs. Swiss-Prot
Match: RRP1L_DROME (Ribosomal RNA processing protein 1 homolog OS=Drosophila melanogaster GN=Nnp-1 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.7e-18
Identity = 67/248 (27.02%), Postives = 125/248 (50.40%), Query Frame = 1 

Query: 12  VSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLS----DGDMKKLWKGLFYCVWHADKAP 71
           V +++ LA ++   R++ +R++ K W   +   S    + D  ++WKGL+Y +W +DK  
Sbjct: 41  VKIIRALACNDVVERNRQIRILRK-WFKARAGSSFPFNEDDFMRIWKGLYYTMWMSDKPL 100

Query: 72  VQSELINRLASLLLHL--DLPLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRRFLHQF 131
           VQ EL  +LA ++     +   ++ YFS F+ TM +E+ GID  R+DKF +L RR +   
Sbjct: 101 VQEELAEKLAQMVDSFGGNTACSLAYFSAFMRTMCQEYFGIDQWRMDKFLMLTRRMVRYL 160

Query: 132 FALLKKHSWDLELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPFL--PLQKE 191
              LK+++W+ +L       ++  V     K  G  ++Y    VF EEL       +   
Sbjct: 161 LRFLKQNNWNADLIAAFNSSMQLSVMSEQPKSRGMTMHY--LDVFFEELAKAANGEITAA 220

Query: 192 VIDILFKPFIYSMAKLSDKVLLGKIKSNLFDVIL---KMGKQLLER----RKCGEDVDSG 245
            +++  +PF+  +A   D  L+ + ++ +   ++    +G+Q  E+    ++ G    S 
Sbjct: 221 QVNMFLRPFVTYIATQRDAKLVAQCRTRVLYHLMYQSDLGRQYSEKYNAWKQMGFPTASI 280

[Close]
BLAST of Cp4.1LG11g06700 vs. TrEMBL
Match: A0A0A0LGX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G062650 PE=4 SV=1)

HSP 1 Score: 918.3 bits (2372), Expect = 4.7e-264
Identity = 494/596 (82.89%), Postives = 515/596 (86.41%), Query Frame = 1 

Query: 1   MEEVVEGDQYFVSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60
           MEEVVEGDQ F SLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61  WHADKAPVQSELINRLASLLLHLDLPLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120
           WHADK PVQSELINRLASLLLHLDL LAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR
Sbjct: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120

Query: 121 FLHQFFALLKKHSWDLELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPFLPL 180
           FLHQFFALLKKHSWDLELCRR VQVLEERV+F +DKF G+GVNYQIASVFLEELRPFLPL
Sbjct: 121 FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL 180

Query: 181 QKEVIDILFKPFIYSMAKLSDKVLLGKIKSNLFDVILKMGKQLLERRKCGEDVDSGDDMV 240
           QKEV+D+LFKPF+ SM KL DKVLLGKIKSNLFDVILK GKQLLE RK G+DVDS DD V
Sbjct: 181 QKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV 240

Query: 241 VLGSISLTNLFSTTFYELGSSPDCCQGNRKVLFAMHEEYQKLEKDIISSGIEISFPDLQE 300
           V G++SLTN FSTTFYELGSSPDCCQGNRKVLFAMHEE+QKLEKD  SSGIEISFPDLQE
Sbjct: 241 VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE 300

Query: 301 QDVDEVPTLVPVSSEGEAPSEISAVDVDITAESTDKAHKKKKKNKKATPSEISMLDVDLT 360
           QD DEVPTLVP+SS  EAPSEIS VDVD+  ESTDKA                       
Sbjct: 301 QDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKA----------------------- 360

Query: 361 AESTDKPLKKQKKNKKATDGSGK------KKTKKTTNGSSDLVSENTTVNKDNENIVASN 420
                  LKKQKK+KKATDGSGK      KK KKTTNG SDLVSENT  NKDNENIV +N
Sbjct: 361 -------LKKQKKSKKATDGSGKKKAKKAKKAKKTTNGISDLVSENTPANKDNENIVVAN 420

Query: 421 GENSNNEQISDGNMIALDESVISNLQIQFERVASEADFGDNLLSPVISTNGSVKKRKRAK 480
           GENSNNEQISDGNMI  DE+VISNLQ+QFERVA+EADFG + +SPVISTNGSVKKRKRAK
Sbjct: 421 GENSNNEQISDGNMITFDETVISNLQMQFERVAAEADFGKSTVSPVISTNGSVKKRKRAK 480

Query: 481 NVDGLQKHDVVLPSEVDAEGNTAVKSGEKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPS 540
           NV  LQKHD  LPSE  AEGNTA KS EKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPS
Sbjct: 481 NVGELQKHDAGLPSEAVAEGNTAAKSEEKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPS 540

Query: 541 VTPRGSALKKGIPPGPILEFPATAKRTKRRAVAMRAKKGVRSLPVKRVKKLKSKST 591
           VTPRGSALKKGIPPGPILEFPAT KRTKRRAV+MR K GVRSLPVKR+KKLKSKST
Sbjct: 541 VTPRGSALKKGIPPGPILEFPATTKRTKRRAVSMRTKNGVRSLPVKRLKKLKSKST 566

[Close]
BLAST of Cp4.1LG11g06700 vs. TrEMBL
Match: A0A061FFL5_THECC (Ribosomal RNA processing protein 1 B, putative OS=Theobroma cacao GN=TCM_034656 PE=4 SV=1)

HSP 1 Score: 562.8 bits (1449), Expect = 5.1e-157
Identity = 315/584 (53.94%), Postives = 414/584 (70.89%), Query Frame = 1 

Query: 13  SLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCVWHADKAPVQSEL 72
           +L+K LA+ +K+TRD+ +R ++ TWLP+Q  +SD +MK+LWKGLFYCVWHADK P QS+L
Sbjct: 11  TLIKQLAACDKSTRDRAVRSLLHTWLPSQAEVSDEEMKRLWKGLFYCVWHADKLPAQSDL 70

Query: 73  INRLASLLLHLDLPLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRRFLHQFFALLKKH 132
           I +L+S+L  L+  L++QYFSVFLLTMRREW GID LRLDKFYLLIRRFL+ FF +LKK 
Sbjct: 71  IEKLSSVLPKLETGLSLQYFSVFLLTMRREWTGIDKLRLDKFYLLIRRFLNCFFVMLKKW 130

Query: 133 SWDLELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPFLPLQKEVIDILFKPF 192
           SWDL+  RRS++VL +  F  DDKF G+GVNY IAS+FLEE+RPFLP++KEV+++L +PF
Sbjct: 131 SWDLDFTRRSIRVLVDGTFLADDKFQGNGVNYHIASIFLEEIRPFLPVKKEVVEVLLEPF 190

Query: 193 IYSMAKLSDKVLLGKIKSNLFDVILKMGKQLLERRKCGEDVDSGDDMVVLGSISLTNLFS 252
           +  M K+ DKVL+GKI+SN+FDV +KMG++ LE ++ G++VD G+D+VVLG+ISL   FS
Sbjct: 191 VGIMGKVGDKVLVGKIRSNVFDVFVKMGRRFLELKRSGDEVDEGEDLVVLGTISLLMGFS 250

Query: 253 TTFYELGSSPDCCQGNRKVLFAMHEEYQKLEKDIISSGIEISFPDLQE-QDVDEVPTLVP 312
             FYELGSS DCCQGNRKV+  +HEE+ KLEKD+   GI++S P+  E  + DEVP L+P
Sbjct: 251 AKFYELGSSADCCQGNRKVVLGLHEEFLKLEKDLTLLGIDVSIPEPNEGGEEDEVPELIP 310

Query: 313 VSSEGEAPSEISAVDVDITAESTDKAHKKKKKNKKATPSEISMLDVDLTAESTDKPLKKQ 372
           ++SE E        D D  +E                P+E++         S  K LKK 
Sbjct: 311 IASEMEVD------DSDGVSE----------------PAEVN------ANGSAKKALKKS 370

Query: 373 KKNKKATDGSGKKKTKKTTNGSSDLVSENTTVNKDNENIVASNGENSNNEQISDGNMIAL 432
           KK KKAT GSG KKTKK  N      +E +  +++N+ +V +   NS+ EQ  DG+ I  
Sbjct: 371 KKAKKATRGSG-KKTKKCKN------AECSPADQENDVMVPAESANSSIEQNGDGHSITF 430

Query: 433 DESVISNLQIQFERVASEADFGDNLLS--PVISTNGSV-KKRKRAKNVDGLQKHDVVLPS 492
            ESVISNLQ+QFE+VA+E     ++ S   +   NG+  KKRKR K+VDG +  +  L +
Sbjct: 431 TESVISNLQLQFEKVAAEVGLDGDVASACDLPKVNGAASKKRKRVKSVDGQKSQNGELTN 490

Query: 493 EVDAEGNTAVKSGEKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPP 552
           + D EG    K+GEKS K+VRFSMKNNLVWKPH+PLPP+SLRLPPSVTPRGSALKKGIPP
Sbjct: 491 QGDGEGGGTAKTGEKSTKRVRFSMKNNLVWKPHSPLPPQSLRLPPSVTPRGSALKKGIPP 550

Query: 553 GPILEFPATAKRTKRRAVAMRAKKGVRSL--PVKRVKKLKSKST 591
           GPI E P   K+ K+     +A+K ++S+   VKR KKLKS S+
Sbjct: 551 GPITEVPPLTKKVKKAKSVKKARKVIKSMYPLVKRTKKLKSVSS 559

[Close]
BLAST of Cp4.1LG11g06700 vs. TrEMBL
Match: A0A067F3M5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008164mg PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 1.2e-153
Identity = 316/607 (52.06%), Postives = 412/607 (67.87%), Query Frame = 1 

Query: 1   MEEVVEGDQYFVSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60
           M+E+ E ++   SL+K LAS NK TR+K L  ++K WLP QT +SD DMKKLWKGLFYCV
Sbjct: 1   MKEMGETEEVGSSLIKQLASCNKGTREKALNALLKNWLPNQTQISDDDMKKLWKGLFYCV 60

Query: 61  WHADKAPVQSELINRLASLLLHLDLPLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120
           WHADK   Q++LI  LAS++  LDLPLA+ YFS FLLTMRREW GID LRLDKFYLL+RR
Sbjct: 61  WHADKLAFQTQLIEFLASVITSLDLPLAIHYFSTFLLTMRREWTGIDGLRLDKFYLLVRR 120

Query: 121 FLHQFFALLKKHSWDLELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPFLPL 180
           FL  +F ++KK+ WD+EL ++ + VL  R + +DDKF G+GVNY I SVF+EE+R FLPL
Sbjct: 121 FLRYYFQIMKKNLWDIELVKKLMGVLVHRSWLSDDKFLGNGVNYHIVSVFVEEIRAFLPL 180

Query: 181 QKEVIDILFKPFIYSMAKLSDKVLLGKIKSNLFDVILKMGKQLLERRKCGEDVDSGDDMV 240
           +KEV++ +F PF+  MAK+ DKVL+GKIKSN+FDV+ KMG++LL+ +K G +VDS D++V
Sbjct: 181 RKEVVEDIFGPFVSVMAKVQDKVLVGKIKSNVFDVLSKMGRRLLDVKKSGGEVDSSDEVV 240

Query: 241 VLGSISLTNLFSTTFYELGSSPDCCQGNRKVLFAMHEEYQKLEKDIISSGIEISFPDL-- 300
           +LG+I++   FS  F+ELGSS +CCQGNRKVLF++HEE+ KLEKD  SSG+EIS PD+  
Sbjct: 241 LLGTIAIVLGFSGKFFELGSSVECCQGNRKVLFSLHEEFLKLEKDFGSSGVEISIPDVSV 300

Query: 301 -QEQDVDEVPTLVPVSSEGEAPSEISAVDVDITAESTDKAHKKKKKNKKATPSEISMLDV 360
             E + DEVP LVP+SS            +D+     D A                    
Sbjct: 301 GDEDEDDEVPNLVPISSY-----------MDVDGSGDDVAE------------------- 360

Query: 361 DLTAESTDKPLKKQKKNKKATDG---SGKK-KTKKTTNGSSDLVSENTTVNKDNENIVAS 420
                ++D+ L K+KK K A+ G   +GKK K KK  N  SD+ SE +   KD+ENIV +
Sbjct: 361 ---GAASDEVLNKRKKGKNASSGNDKNGKKSKKKKKKNAVSDVGSETSLSGKDDENIVNA 420

Query: 421 NGENSNNEQISDGNMIALDESVISNLQIQFERVASEADFGDNL-------LSPVISTNGS 480
              +S +EQ  D N I  +ESVISNLQ+QFE+VA+E    DN+             TNG+
Sbjct: 421 TSNDSIDEQNHDTNFIPFNESVISNLQMQFEKVAAEVGMEDNVDTACDLPQDRANGTNGT 480

Query: 481 V-KKRKRAKNVDGLQKHDVVLPSEVDAEGNTAVKSGEKSVKKVRFSMKNNLVWKPHNPLP 540
           V KKRKR KN DG Q  +     E DA+     KSGEKS KKVRFSMK+NLVWKP +PLP
Sbjct: 481 VSKKRKRVKNKDGKQSKNPESTREGDADDCLTAKSGEKSAKKVRFSMKSNLVWKPQSPLP 540

Query: 541 PESLRLPPSVTPRGSALKKGIPPGPILEFPATAKRTKRRAVAMRAKKGV---RSLPVKRV 590
           P+SLRLPPSV PRGSALKKG+PPGP++E    +K+ K+RA +++  + V   ++  +K  
Sbjct: 541 PQSLRLPPSVAPRGSALKKGVPPGPVMEMSVASKKVKQRAKSVKKARKVIKIKNPTLKGA 574

[Close]
BLAST of Cp4.1LG11g06700 vs. TrEMBL
Match: V4WI81_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010385mg PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 1.2e-153
Identity = 317/607 (52.22%), Postives = 411/607 (67.71%), Query Frame = 1 

Query: 1   MEEVVEGDQYFVSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60
           M+E+ E ++   SL+K LAS NK TR+K L  ++K WLP QT +SD DMKKLWKGLFYCV
Sbjct: 53  MKEMGETEEVGSSLIKQLASCNKGTREKALNALLKNWLPNQTQISDDDMKKLWKGLFYCV 112

Query: 61  WHADKAPVQSELINRLASLLLHLDLPLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120
           WHADK   Q++LI  LAS++  LDLPLA+ YFS FLLTMRREW GID LRLDKFYLL+RR
Sbjct: 113 WHADKLAFQTQLIEFLASVITSLDLPLAIHYFSTFLLTMRREWTGIDGLRLDKFYLLVRR 172

Query: 121 FLHQFFALLKKHSWDLELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPFLPL 180
           FL  +F ++KK+ WD+EL ++ + VL  R   +DDKF G+GVNY I SVF+EE+R FLPL
Sbjct: 173 FLRYYFQIMKKNLWDIELVKKLMGVLVHRSLLSDDKFLGNGVNYHIVSVFVEEIRAFLPL 232

Query: 181 QKEVIDILFKPFIYSMAKLSDKVLLGKIKSNLFDVILKMGKQLLERRKCGEDVDSGDDMV 240
           +KEV++ +F PF+  MAK+ DKVL+GKIKSN+FDV+ KMG++LL+ +K G +VDS D++V
Sbjct: 233 RKEVVEDIFGPFVSVMAKVQDKVLVGKIKSNVFDVLSKMGRRLLDVKKSGGEVDSSDEVV 292

Query: 241 VLGSISLTNLFSTTFYELGSSPDCCQGNRKVLFAMHEEYQKLEKDIISSGIEISFPDL-- 300
           +LG+I++   FS  F+ELGSS +CCQGNRKVLF++HEE+ KLEKD  SSG+EIS PD+  
Sbjct: 293 LLGTIAIVLGFSGKFFELGSSVECCQGNRKVLFSLHEEFLKLEKDFGSSGVEISIPDVSV 352

Query: 301 -QEQDVDEVPTLVPVSSEGEAPSEISAVDVDITAESTDKAHKKKKKNKKATPSEISMLDV 360
             E + DEVP LVP+SS            +D+     D A                    
Sbjct: 353 GDEDEDDEVPNLVPISSY-----------MDVDGSGDDVAE------------------- 412

Query: 361 DLTAESTDKPLKKQKKNKKATDG---SGKK-KTKKTTNGSSDLVSENTTVNKDNENIVAS 420
                ++D+ L K KK KKA+ G   +GKK K KK  N  SD+ SE +   KD+ENIV +
Sbjct: 413 ---GAASDEVLNKCKKGKKASSGNDKNGKKSKKKKKKNAVSDVGSETSLSGKDDENIVNA 472

Query: 421 NGENSNNEQISDGNMIALDESVISNLQIQFERVASEADFGDNL-------LSPVISTNGS 480
              +S +EQ  D N I  +ESVISNLQ+QFE+VA+E    DN+             TNG+
Sbjct: 473 TSNDSIDEQNHDTNFIPFNESVISNLQMQFEKVAAEVGMEDNVDTACDLPQDRANGTNGT 532

Query: 481 V-KKRKRAKNVDGLQKHDVVLPSEVDAEGNTAVKSGEKSVKKVRFSMKNNLVWKPHNPLP 540
           V KKRKR KN DG Q  +     E DA+     KSGEKS KKVRFSMK+NLVWKP +PLP
Sbjct: 533 VSKKRKRVKNKDGKQSKNPESTREGDADDCLTAKSGEKSAKKVRFSMKSNLVWKPQSPLP 592

Query: 541 PESLRLPPSVTPRGSALKKGIPPGPILEFPATAKRTKRRAVAMRAKKGV---RSLPVKRV 590
           P+SLRLPPSV PRGSALKKG+PPGP++E    +K+ K+RA +++  + V   ++  +K  
Sbjct: 593 PQSLRLPPSVAPRGSALKKGVPPGPVMEMSVASKKVKQRAKSVKKARKVIKIKNPTLKGA 626

[Close]
BLAST of Cp4.1LG11g06700 vs. TrEMBL
Match: A0A0D2Q5W4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G136300 PE=4 SV=1)

HSP 1 Score: 543.5 bits (1399), Expect = 3.2e-151
Identity = 310/583 (53.17%), Postives = 397/583 (68.10%), Query Frame = 1 

Query: 13  SLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCVWHADKAPVQSEL 72
           SL+K LA+ +K+TRDK +R +I TWLP+QT LSD +MK+LWKGLF+CVWHADK PVQS+L
Sbjct: 7   SLIKQLAACDKSTRDKAVRSVINTWLPSQTQLSDEEMKRLWKGLFFCVWHADKLPVQSDL 66

Query: 73  INRLASLLLHLDLPLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRRFLHQFFALLKKH 132
           I +L+S++  L+ PL++QYFSVFLLTMRREW GID LRLDKFYLLIR+FLH FFA+LK+ 
Sbjct: 67  IEKLSSVVPKLEPPLSLQYFSVFLLTMRREWTGIDKLRLDKFYLLIRKFLHFFFAMLKRW 126

Query: 133 SWDLELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPFLPLQKEVIDILFKPF 192
           SWDL   RRS++VL +  F  DDKF  +GVNY IASVFLEELRPFLP++KEV++IL +PF
Sbjct: 127 SWDLAFTRRSIRVLVDGTFLADDKFQRNGVNYHIASVFLEELRPFLPVKKEVLEILLEPF 186

Query: 193 IYSMAKLSDKVLLGKIKSNLFDVILKMGKQLLERRKCGEDVDSGDDMVVLGSISLTNLFS 252
           +  M ++SDK+L+GKI+ N+FD  +KMG++LLE +   E+VD GDD+VVLG+ISL   FS
Sbjct: 187 VGIMGRVSDKILVGKIRINVFDEFVKMGRRLLELKTSIEEVDQGDDVVVLGTISLVMGFS 246

Query: 253 TTFYELGSSPDCCQGNRKVLFAMHEEYQKLEKDIISSGIEISFPDLQEQD-VDEVPTLVP 312
             FYELGSS DCCQGNRK+L  +HEE+ KLEKD+ S GI+IS P+  E D  DEVP LVP
Sbjct: 247 KKFYELGSSVDCCQGNRKILLGVHEEFLKLEKDLTSLGIDISIPECNEGDEEDEVPELVP 306

Query: 313 VSSEGEAPSEISAVDVDITAESTDKAHKKKKKNKKATPSEISMLDVDLTAESTDKPLKKQ 372
           ++SE E      A ++ + A       K  KK KK                         
Sbjct: 307 IASEMELNISNGASEL-VEANGNGSVRKASKKCKKV------------------------ 366

Query: 373 KKNKKATDGSGKKKTKKTTNGSSDLVSENTTVNKDNENIVASNGENSNNEQISDGNMIAL 432
              KKAT  SG KKTKK  N    +  E   V      +V +   +SN E+  +G+ I  
Sbjct: 367 ---KKATRNSG-KKTKKNNNAKCTVADEEIDV------MVPAESASSNIEKNGEGDSITF 426

Query: 433 DESVISNLQIQFERVASEADFGDNLLS--PVISTNGSV-KKRKRAKNVDGLQKHDVVLPS 492
            ESVISNLQ+QFE+VA E     ++ S   +   NG+V KKRKR K++DG +  +    +
Sbjct: 427 TESVISNLQLQFEKVAEEVGLNSDVASACDLPKVNGTVSKKRKRGKHMDGKKSQNGEETN 486

Query: 493 EVDAEGNTAVKSGEKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPP 552
           + + E +   KS E S K+VRFSMKNN+VWKPH+PLPP SLR+PPSVTPRGSALKKG+PP
Sbjct: 487 QGEDEIDATAKSCENSTKRVRFSMKNNIVWKPHSPLPPLSLRIPPSVTPRGSALKKGLPP 546

Query: 553 GPILEFPATAKRTKRRAVAMRAKKGVRSLP--VKRVKKLKSKS 590
           GPI E P   K+ K+     + +K V+ +   VKR KKLKSKS
Sbjct: 547 GPIREMPLMTKKVKKAKSVKKVRKVVKGMHPLVKRTKKLKSKS 554

[Close]
BLAST of Cp4.1LG11g06700 vs. TAIR10
Match: AT5G20600.1 (AT5G20600.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 361.3 bits (926), Expect = 1.1e-99
Identity = 213/428 (49.77%), Postives = 285/428 (66.59%), Query Frame = 1 

Query: 13  SLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCVWHADKAPVQSEL 72
           SL+K LAS  ++ RD++LR +++TWLP QT +SD DMKKLW+G+FYCVWHADK+  QSEL
Sbjct: 22  SLIKKLASCKQSIRDRSLRTVLRTWLPEQTEISDEDMKKLWQGIFYCVWHADKSLYQSEL 81

Query: 73  INRLASLLLHLDLPLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRRFLHQFFALLKKH 132
           I+RL+S L  L LPL++ YF+VFL TMRREW+ ID LRLDKFYLLIRRFLH FF+L+  +
Sbjct: 82  IDRLSSALQSLPLPLSIHYFTVFLFTMRREWSRIDRLRLDKFYLLIRRFLHGFFSLIDSN 141

Query: 133 SWDLELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPFLPLQKEVIDILFKPF 192
           SWDLE  RR + +L +     DDKF G+GVNY I S F+EELRPFLPL+KEV+++LF PF
Sbjct: 142 SWDLEFTRRLMGILFDGTLLADDKFQGNGVNYHITSAFVEELRPFLPLRKEVLELLFAPF 201

Query: 193 IYSMAKLSDKVLLGKIKSNLFDVILKMGKQLLERRKCGED-VDSGDDMVVLGSISLTNLF 252
           +  M  ++DK+L+GKIKSNLFD +LKMGK+LL  ++ G+D V   DD+VVLGSI+L+  F
Sbjct: 202 VKIMGVVNDKILVGKIKSNLFDELLKMGKKLLIIKQSGDDAVPEDDDVVVLGSIALSMEF 261

Query: 253 STTFYELGSSPDCCQGNRKVLFAMHEEYQKLEKDIISSGIEISFPDLQEQDVDEVPTLVP 312
           +  FYELGSSP+C QGNRK++FA+H+E+ +LEKD+ SS IE+S  +      DEVP  VP
Sbjct: 262 AKRFYELGSSPECHQGNRKLIFALHKEFLQLEKDMSSSSIEVSIVEASRPGNDEVPESVP 321

Query: 313 VSSEGEAPSEISAVDVDITAESTDKAHKKKKKNKKATPSEISMLD--VDL--TAESTDKP 372
           VS         S   V   + S  K  KK  K KK +  + +++D  VDL    ES D+ 
Sbjct: 322 VSESNTNVVSKSKKIVANGSSSKKKGLKKCSKTKKDSVKKGAVMDSVVDLGNKDESFDET 381

Query: 373 LKKQKKNKKATDGSGKKKTKKTTNGSSDLVSENTTVNKDNENIVASNGENSNNEQISDGN 432
           +    + +     S    +K       D V+E  +V+K  +       EN   EQ+S  N
Sbjct: 382 MISDLRQEFEKIASEMSPSKSEVASVCD-VAEPVSVSKKTKK---RKRENKGEEQVSTVN 441

Query: 433 MIALDESV 436
             A + S+
Sbjct: 442 RDAAETSL 445

[Close]
BLAST of Cp4.1LG11g06700 vs. NCBI nr
Match: gi|659069592|ref|XP_008450828.1| (PREDICTED: ribosomal RNA processing protein 1 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 935.3 bits (2416), Expect = 5.4e-269
Identity = 499/596 (83.72%), Postives = 522/596 (87.58%), Query Frame = 1 

Query: 1   MEEVVEGDQYFVSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60
           MEEVVEGDQ F SLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61  WHADKAPVQSELINRLASLLLHLDLPLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120
           WHADK PVQSELINRLASLLLHLDL LAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR
Sbjct: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120

Query: 121 FLHQFFALLKKHSWDLELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPFLPL 180
           FLHQFFALLKKHSWDLELCR  VQVLEERVFFTDDKF G+GVNYQIASVFLEELRPFLPL
Sbjct: 121 FLHQFFALLKKHSWDLELCRCLVQVLEERVFFTDDKFHGNGVNYQIASVFLEELRPFLPL 180

Query: 181 QKEVIDILFKPFIYSMAKLSDKVLLGKIKSNLFDVILKMGKQLLERRKCGEDVDSGDDMV 240
           QKEV+D+LFKPF+ SMAKL DKVL GKIKSNLFDVILKMGKQLLE RK G+D+DSGDD  
Sbjct: 181 QKEVVDVLFKPFLLSMAKLPDKVLFGKIKSNLFDVILKMGKQLLESRKRGDDIDSGDDTA 240

Query: 241 VLGSISLTNLFSTTFYELGSSPDCCQGNRKVLFAMHEEYQKLEKDIISSGIEISFPDLQE 300
           V G+ISLTN FSTTFYELGSSPDCCQGNRKVLFAMHEE+QKLEKD  SSGIEISFPDLQE
Sbjct: 241 VYGTISLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE 300

Query: 301 QDVDEVPTLVPVSSEGEAPSEISAVDVDITAESTDKAHKKKKKNKKATPSEISMLDVDLT 360
           QD DEVPTLVP+ SE EAPSEIS VDVD+ AESTDKA                       
Sbjct: 301 QDGDEVPTLVPILSEEEAPSEISMVDVDVDAESTDKA----------------------- 360

Query: 361 AESTDKPLKKQKKNKKATDGSGK------KKTKKTTNGSSDLVSENTTVNKDNENIVASN 420
                  LKKQK++KKATDGSGK      KK KKTTNG SDLVSEN+  NKDNENIV +N
Sbjct: 361 -------LKKQKRSKKATDGSGKKKAKKAKKAKKTTNGISDLVSENSPANKDNENIVVAN 420

Query: 421 GENSNNEQISDGNMIALDESVISNLQIQFERVASEADFGDNLLSPVISTNGSVKKRKRAK 480
           GENSNNEQISDGNMI  DE+VISNLQ+QFE+VA+EADFGD+++SPVISTNGSVKKRKRAK
Sbjct: 421 GENSNNEQISDGNMITFDETVISNLQMQFEKVAAEADFGDSIVSPVISTNGSVKKRKRAK 480

Query: 481 NVDGLQKHDVVLPSEVDAEGNTAVKSGEKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPS 540
           NVD LQKHDV LPSE  AEGNTA KS EKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPS
Sbjct: 481 NVDELQKHDVALPSEAQAEGNTAAKSEEKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPS 540

Query: 541 VTPRGSALKKGIPPGPILEFPATAKRTKRRAVAMRAKKGVRSLPVKRVKKLKSKST 591
           VTPRGSALKKGIPPGPILEFPAT KRTKRRAV+MR KKGVRSLPVKR+KKLKSKST
Sbjct: 541 VTPRGSALKKGIPPGPILEFPATTKRTKRRAVSMRTKKGVRSLPVKRLKKLKSKST 566

[Close]
BLAST of Cp4.1LG11g06700 vs. NCBI nr
Match: gi|449465344|ref|XP_004150388.1| (PREDICTED: ribosomal RNA processing protein 1 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 918.3 bits (2372), Expect = 6.8e-264
Identity = 494/596 (82.89%), Postives = 515/596 (86.41%), Query Frame = 1 

Query: 1   MEEVVEGDQYFVSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60
           MEEVVEGDQ F SLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61  WHADKAPVQSELINRLASLLLHLDLPLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120
           WHADK PVQSELINRLASLLLHLDL LAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR
Sbjct: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120

Query: 121 FLHQFFALLKKHSWDLELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPFLPL 180
           FLHQFFALLKKHSWDLELCRR VQVLEERV+F +DKF G+GVNYQIASVFLEELRPFLPL
Sbjct: 121 FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL 180

Query: 181 QKEVIDILFKPFIYSMAKLSDKVLLGKIKSNLFDVILKMGKQLLERRKCGEDVDSGDDMV 240
           QKEV+D+LFKPF+ SM KL DKVLLGKIKSNLFDVILK GKQLLE RK G+DVDS DD V
Sbjct: 181 QKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV 240

Query: 241 VLGSISLTNLFSTTFYELGSSPDCCQGNRKVLFAMHEEYQKLEKDIISSGIEISFPDLQE 300
           V G++SLTN FSTTFYELGSSPDCCQGNRKVLFAMHEE+QKLEKD  SSGIEISFPDLQE
Sbjct: 241 VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE 300

Query: 301 QDVDEVPTLVPVSSEGEAPSEISAVDVDITAESTDKAHKKKKKNKKATPSEISMLDVDLT 360
           QD DEVPTLVP+SS  EAPSEIS VDVD+  ESTDKA                       
Sbjct: 301 QDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKA----------------------- 360

Query: 361 AESTDKPLKKQKKNKKATDGSGK------KKTKKTTNGSSDLVSENTTVNKDNENIVASN 420
                  LKKQKK+KKATDGSGK      KK KKTTNG SDLVSENT  NKDNENIV +N
Sbjct: 361 -------LKKQKKSKKATDGSGKKKAKKAKKAKKTTNGISDLVSENTPANKDNENIVVAN 420

Query: 421 GENSNNEQISDGNMIALDESVISNLQIQFERVASEADFGDNLLSPVISTNGSVKKRKRAK 480
           GENSNNEQISDGNMI  DE+VISNLQ+QFERVA+EADFG + +SPVISTNGSVKKRKRAK
Sbjct: 421 GENSNNEQISDGNMITFDETVISNLQMQFERVAAEADFGKSTVSPVISTNGSVKKRKRAK 480

Query: 481 NVDGLQKHDVVLPSEVDAEGNTAVKSGEKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPS 540
           NV  LQKHD  LPSE  AEGNTA KS EKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPS
Sbjct: 481 NVGELQKHDAGLPSEAVAEGNTAAKSEEKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPS 540

Query: 541 VTPRGSALKKGIPPGPILEFPATAKRTKRRAVAMRAKKGVRSLPVKRVKKLKSKST 591
           VTPRGSALKKGIPPGPILEFPAT KRTKRRAV+MR K GVRSLPVKR+KKLKSKST
Sbjct: 541 VTPRGSALKKGIPPGPILEFPATTKRTKRRAVSMRTKNGVRSLPVKRLKKLKSKST 566

[Close]
BLAST of Cp4.1LG11g06700 vs. NCBI nr
Match: gi|659069594|ref|XP_008450836.1| (PREDICTED: ribosomal RNA processing protein 1 homolog B isoform X2 [Cucumis melo])

HSP 1 Score: 637.5 bits (1643), Expect = 2.3e-179
Identity = 342/420 (81.43%), Postives = 356/420 (84.76%), Query Frame = 1 

Query: 1   MEEVVEGDQYFVSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60
           MEEVVEGDQ F SLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61  WHADKAPVQSELINRLASLLLHLDLPLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120
           WHADK PVQSELINRLASLLLHLDL LAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR
Sbjct: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120

Query: 121 FLHQFFALLKKHSWDLELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPFLPL 180
           FLHQFFALLKKHSWDLELCR  VQVLEERVFFTDDKF G+GVNYQIASVFLEELRPFLPL
Sbjct: 121 FLHQFFALLKKHSWDLELCRCLVQVLEERVFFTDDKFHGNGVNYQIASVFLEELRPFLPL 180

Query: 181 QKEVIDILFKPFIYSMAKLSDKVLLGKIKSNLFDVILKMGKQLLERRKCGEDVDSGDDMV 240
           QKEV+D+LFKPF+ SMAKL DKVL GKIKSNLFDVILKMGKQLLE RK G+D+DSGDD  
Sbjct: 181 QKEVVDVLFKPFLLSMAKLPDKVLFGKIKSNLFDVILKMGKQLLESRKRGDDIDSGDDTA 240

Query: 241 VLGSISLTNLFSTTFYELGSSPDCCQGNRKVLFAMHEEYQKLEKDIISSGIEISFPDLQE 300
           V G+ISLTN FSTTFYELGSSPDCCQGNRKVLFAMHEE+QKLEKD  SSGIEISFPDLQE
Sbjct: 241 VYGTISLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE 300

Query: 301 QDVDEVPTLVPVSSEGEAPSEISAVDVDITAESTDKAHKKKKKNKKATPSEISMLDVDLT 360
           QD DEVPTLVP+ SE EAPSEIS VDVD+ AESTDKA                       
Sbjct: 301 QDGDEVPTLVPILSEEEAPSEISMVDVDVDAESTDKA----------------------- 360

Query: 361 AESTDKPLKKQKKNKKATDGSGK------KKTKKTTNGSSDLVSENTTVNKDNENIVASN 415
                  LKKQK++KKATDGSGK      KK KKTTNG SDLVSEN+  NKDNENIV +N
Sbjct: 361 -------LKKQKRSKKATDGSGKKKAKKAKKAKKTTNGISDLVSENSPANKDNENIVVAN 390

[Close]
BLAST of Cp4.1LG11g06700 vs. NCBI nr
Match: gi|778667662|ref|XP_011648968.1| (PREDICTED: ribosomal RNA processing protein 1 homolog B isoform X2 [Cucumis sativus])

HSP 1 Score: 631.7 bits (1628), Expect = 1.3e-177
Identity = 340/420 (80.95%), Postives = 354/420 (84.29%), Query Frame = 1 

Query: 1   MEEVVEGDQYFVSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60
           MEEVVEGDQ F SLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61  WHADKAPVQSELINRLASLLLHLDLPLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120
           WHADK PVQSELINRLASLLLHLDL LAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR
Sbjct: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120

Query: 121 FLHQFFALLKKHSWDLELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPFLPL 180
           FLHQFFALLKKHSWDLELCRR VQVLEERV+F +DKF G+GVNYQIASVFLEELRPFLPL
Sbjct: 121 FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL 180

Query: 181 QKEVIDILFKPFIYSMAKLSDKVLLGKIKSNLFDVILKMGKQLLERRKCGEDVDSGDDMV 240
           QKEV+D+LFKPF+ SM KL DKVLLGKIKSNLFDVILK GKQLLE RK G+DVDS DD V
Sbjct: 181 QKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV 240

Query: 241 VLGSISLTNLFSTTFYELGSSPDCCQGNRKVLFAMHEEYQKLEKDIISSGIEISFPDLQE 300
           V G++SLTN FSTTFYELGSSPDCCQGNRKVLFAMHEE+QKLEKD  SSGIEISFPDLQE
Sbjct: 241 VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE 300

Query: 301 QDVDEVPTLVPVSSEGEAPSEISAVDVDITAESTDKAHKKKKKNKKATPSEISMLDVDLT 360
           QD DEVPTLVP+SS  EAPSEIS VDVD+  ESTDKA                       
Sbjct: 301 QDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKA----------------------- 360

Query: 361 AESTDKPLKKQKKNKKATDGSGK------KKTKKTTNGSSDLVSENTTVNKDNENIVASN 415
                  LKKQKK+KKATDGSGK      KK KKTTNG SDLVSENT  NKDNENIV +N
Sbjct: 361 -------LKKQKKSKKATDGSGKKKAKKAKKAKKTTNGISDLVSENTPANKDNENIVVAN 390

[Close]
BLAST of Cp4.1LG11g06700 vs. NCBI nr
Match: gi|645234478|ref|XP_008223829.1| (PREDICTED: ribosomal RNA processing protein 1 homolog [Prunus mume])

HSP 1 Score: 572.4 bits (1474), Expect = 9.2e-160
Identity = 329/586 (56.14%), Postives = 412/586 (70.31%), Query Frame = 1 

Query: 12  VSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCVWHADKAPVQSE 71
           +SL+K LAS NK+ RD+ LRV++KTWLPTQ +L D  MKKLWKGLFYCVWHADK PVQ++
Sbjct: 26  LSLIKQLASCNKSGRDRALRVLLKTWLPTQLNLHDDHMKKLWKGLFYCVWHADKVPVQTQ 85

Query: 72  LINRLASLLLHLDLPLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRRFLHQFFALLKK 131
           LI+RL+SL+L L LPL++ YFS FLLTMRREW+GIDALRLDKFYLLIRRF+  FFAL++ 
Sbjct: 86  LIDRLSSLVLSLHLPLSIHYFSAFLLTMRREWSGIDALRLDKFYLLIRRFMASFFALMRN 145

Query: 132 HSWDLELCRRSVQVLEERVFFTDDKFPGSGVNYQIASVFLEELRPFLPLQKEVIDILFKP 191
           + WDLEL +R + VLEE  FF DDKF G+GVNY IASVFLEELRP+LPL+ EV++++   
Sbjct: 146 NLWDLELVKRLMGVLEEVTFFADDKFLGNGVNYHIASVFLEELRPYLPLKAEVLEVVLVS 205

Query: 192 FIYSMAKLSDKVLLGKIKSNLFDVILKMGKQLLERRKCGEDVDSGDDMVVLGSISLTNLF 251
           FI   AK+ DKVLLGKI+SN FD +L  GK+LLE +K GEDV SGD+++V GSI+LT  F
Sbjct: 206 FIRVSAKVPDKVLLGKIRSNTFDALLGAGKRLLEVKKLGEDVGSGDEVMVFGSIALTMGF 265

Query: 252 STTFYELGSSPDCCQGNRKVLFAMHEEYQKLEKDIISSGIEISFPDLQEQDVDEVPTLVP 311
           S+ FYELGSSP+CCQGNRKVLF +HEE+ KLEK++ SSGIEIS PD+   D + VPTLVP
Sbjct: 266 SSKFYELGSSPECCQGNRKVLFGLHEEFLKLEKELESSGIEISIPDVVYNDDEVVPTLVP 325

Query: 312 VSSEGEAPSEISAVDVDITAESTDKAHKKKKKNKKATPSEISMLDVDLTAESTDKPLKKQ 371
           ++ E        A +V +   S  K  KK K  +K T +       D  AE   K  KK+
Sbjct: 326 LAGEEMEVGNSEAGEVVMVNGSAGKLLKKCKNREKDTGA------ADTKAE---KKKKKK 385

Query: 372 KKNKKATDGSGKKKTKKTTNGSSDLVSENTTVNKDNENIVASNGENSNNEQISDGNMIAL 431
           KKNKK              N   D  SE ++ +++NEN+VA NGE+S+N+Q +D N + L
Sbjct: 386 KKNKKE-------------NEILDSDSEKSSTDRENENVVA-NGESSDNQQATDENAVKL 445

Query: 432 DESVISNLQIQFERVASEADFGDNLLS----PVISTNGSV-KKRKRAKNVDGLQKHDVVL 491
           D++VISNLQ+QFE++A+EA    ++ S    P  S  G V KKRKR K            
Sbjct: 446 DDNVISNLQMQFEKIAAEAGLDGDVPSACDLPTASDKGPVSKKRKRVKKA---------- 505

Query: 492 PSEVDAEGNTAVKSGEKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGI 551
             E D EG T  KSGEKS KKV+FSMK+NLVWKP +PLPP+ LR+PPS TPRGSALKKG+
Sbjct: 506 -VEEDVEGGTNAKSGEKSAKKVKFSMKSNLVWKPQSPLPPQDLRVPPSATPRGSALKKGV 565

Query: 552 PPGPILEFPATAKRTK--RRAVAMRAKKGVRSLPVKRVKKLKSKST 591
           PPGPI E P   K+ K  R   A +A+K      +KR+KKLKS+ T
Sbjct: 566 PPGPIREMPLPTKKVKMVRVVTAKKARKA-----IKRIKKLKSRPT 572

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g06700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RRP1B_MOUSE2.3e-2535.09Ribosomal RNA processing protein 1 homolog B OS=Mus musculus GN=Rrp1b PE=1 SV=2[more]
RRP1_MOUSE6.2e-2331.91Ribosomal RNA processing protein 1 homolog A OS=Mus musculus GN=Rrp1 PE=1 SV=2[more]
RRP1_HUMAN6.8e-2231.70Ribosomal RNA processing protein 1 homolog A OS=Homo sapiens GN=RRP1 PE=1 SV=1[more]
RRP1_SCHPO1.4e-1934.29Ribosomal RNA-processing protein 1 homolog OS=Schizosaccharomyces pombe (strain ... [more]
RRP1L_DROME2.7e-1827.02Ribosomal RNA processing protein 1 homolog OS=Drosophila melanogaster GN=Nnp-1 P... [more]
BLAST of Cp4.1LG11g06700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGX3_CUCSA4.7e-26482.89Uncharacterized protein OS=Cucumis sativus GN=Csa_2G062650 PE=4 SV=1[more]
A0A061FFL5_THECC5.1e-15753.94Ribosomal RNA processing protein 1 B, putative OS=Theobroma cacao GN=TCM_034656 ... [more]
A0A067F3M5_CITSI1.2e-15352.06Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008164mg PE=4 SV=1[more]
V4WI81_9ROSI1.2e-15352.22Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010385mg PE=4 SV=1[more]
A0A0D2Q5W4_GOSRA3.2e-15153.17Uncharacterized protein OS=Gossypium raimondii GN=B456_002G136300 PE=4 SV=1[more]
BLAST of Cp4.1LG11g06700 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G20600.11.1e-9949.77 FUNCTIONS IN: molecular_function unknown[more]
BLAST of Cp4.1LG11g06700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069592|ref|XP_008450828.1|5.4e-26983.72PREDICTED: ribosomal RNA processing protein 1 homolog isoform X1 [Cucumis melo][more]
gi|449465344|ref|XP_004150388.1|6.8e-26482.89PREDICTED: ribosomal RNA processing protein 1 homolog isoform X1 [Cucumis sativu... [more]
gi|659069594|ref|XP_008450836.1|2.3e-17981.43PREDICTED: ribosomal RNA processing protein 1 homolog B isoform X2 [Cucumis melo... [more]
gi|778667662|ref|XP_011648968.1|1.3e-17780.95PREDICTED: ribosomal RNA processing protein 1 homolog B isoform X2 [Cucumis sati... [more]
gi|645234478|ref|XP_008223829.1|9.2e-16056.14PREDICTED: ribosomal RNA processing protein 1 homolog [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0030688preribosome, small subunit precursor
Vocabulary: INTERPRO
TermDefinition
IPR010301Nop52
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
cellular_component GO:0030688 preribosome, small subunit precursor
cellular_component GO:0005829 cytosol
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g06700.1Cp4.1LG11g06700.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010301Nucleolar, Nop52PANTHERPTHR13026NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52coord: 12..589
score: 8.8E
IPR010301Nucleolar, Nop52PFAMPF05997Nop52coord: 13..214
score: 7.1
NoneNo IPR availablePANTHERPTHR13026:SF0RIBOSOMAL RNA PROCESSING PROTEIN 1 HOMOLOGcoord: 12..589
score: 8.8E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g06700CmaCh05G007250Cucurbita maxima (Rimu)cmacpeB766
Cp4.1LG11g06700CmoCh12G009260Cucurbita moschata (Rifu)cmocpeB149
Cp4.1LG11g06700CmoCh05G007630Cucurbita moschata (Rifu)cmocpeB720
Cp4.1LG11g06700Cla005796Watermelon (97103) v1cpewmB122
Cp4.1LG11g06700Csa2G062650Cucumber (Chinese Long) v2cpecuB098
Cp4.1LG11g06700MELO3C003946Melon (DHL92) v3.5.1cpemeB102
Cp4.1LG11g06700ClCG11G011540Watermelon (Charleston Gray)cpewcgB098
Cp4.1LG11g06700CSPI02G06560Wild cucumber (PI 183967)cpecpiB094
Cp4.1LG11g06700Lsi11G008080Bottle gourd (USVL1VR-Ls)cpelsiB070
Cp4.1LG11g06700MELO3C003946.2Melon (DHL92) v3.6.1cpemedB127
Cp4.1LG11g06700CsaV3_2G008990Cucumber (Chinese Long) v3cpecucB0108
Cp4.1LG11g06700CsGy2G006730Cucumber (Gy14) v2cgybcpeB163
Cp4.1LG11g06700Carg22680Silver-seed gourdcarcpeB0005
Cp4.1LG11g06700Carg19811Silver-seed gourdcarcpeB0237
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG11g06700Cp4.1LG07g07670Cucurbita pepo (Zucchini)cpecpeB142
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g06700Wax gourdcpewgoB0127
Cp4.1LG11g06700Cucurbita maxima (Rimu)cmacpeB175