Cp4.1LG11g02670 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g02670
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionExpansin
LocationCp4.1LG11 : 1454386 .. 1457360 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATAACACCTCTCTCTGCTTTTCATTTCACCGGAATTAATGGCGAAACTTCCTTTGATCTTCGCTTTCTCTCTTGCTCTCTCCGATTTCTTCTTCTTTTCCGGCAATGCTTTTGCGCCGTCGGGATGGAACCCCGCCCACGCCACCTTCTACGGCGACAGCGACGCCTCAGGGACAATGGGTAAGTAAAAAAATTTCATTTTGGTTAGTGTCTCTGTTTTTTTGGTTTATGTGAATTTATATTGTTATTGGTGGTTGCAGGCGGAGCTTGTGGGTATGGGAACTTGTACCAGACGGGTTATGGGACGAGAACGGCGGCGCTGAGTACGGCGCTGTTTAACGACGGTGCATCGTGCGGTCAATGCTTCAAGATCATTTGTGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCGTCGGTGACCGTGACGGCGACCAATTTCTGCCCGCCTAACTATGCTCTGCCCAACAACAATGGCGGTTGGTGTAATCCTCCGCTTAAGCACTTCGACATGGCTCAGCCTGCTTGGCAGAAGATTGGCATTTACAGAGGCGGAATCATCCCCGTCCTCTTCCAAAGGTATCTTTTGTAACGTTAAGTCCACCGCTGACCGACATTGTACTTTCATATTTTCCCTTAATATTTTTAAAACCGGTCTGCTAGTAGAGGTTTACATACCTTTTTAAAAGGGTGTTTCGTTCTCCTCACCACTAATATGGATCTCACAATCCAGCCCTTTGTGGCCCGTGTCTTCGTTGGCACTCGTCCCTTTCTCCAATCGATGTGGGACCCACCAAATTCACCGTACTTCAGGGCTAGTGTCCTTGTTGGCAGATCGCCTCATGTCCACCCCTTTGAGTCTGTTCTTAACTTGAGGAGAAAATTTAGGAACGAAAGAATCTCTCCCCTTAAATTGTTTTTTTACTCCCTTTATTTATTTTGACATATTTGGATAGTGGGTCATTTCTAACGTTCTTAAACTTAAAATTTTAACGAGTTTAGTTTCTTAATGGCAGAGTTCCATGCATGAAGAAAGGAGGCGTGAGGTTCACCGTGAATGGACGAGACTATTTTGAGCTAGTTTTGATAAGCAACGTGGGAGGGGCTGGATCCATCCAATCGGTATCCATTAAAGGATCCAAATCCGGCAATTGGACGCCAATGTCGAGGAATTGGGGCGCCAATTGGCAGTCCAATTCCTATCTGAATGGCCAATCTTTGTCGTTCAAGATCACCACTAGCGATGGCCAGACCCGAGTGTTCAATAATGTTGTGCCTTCAAGCTGGCGGTTCGGCCAGACATTTGGAAGCAAGGTCCAATTCAGCTGAGCACCACGCCGGCGATTGGAGAGGCAGAGGCGTGCCGAGTGGTTTTTTTCAATCTACGGCAGCAGCCCGCCACCTGAAGAGACGATCCATGGGCGTTTGAATTTGTGGCAGCAAAGTAATAAGAAGCCTAAGCAAATTACTTAATGGCTTCAACACTTAGTTTTTTTTTTTTTCCTTACATTTTTAAGGTCACTTTGTAATTTCAATGGCTTTGTTACTCTTCTATAAATTATATACTACTTGACTATGCATATATGTACCCAAAACTATCACTCCTTTCAATGCCTTGAGCTACTACTACTACGACCATTTGTCCCCTAATCTCGAATCCATCATCTCCCGAGAAGTCCACCTAGCTATTGTCAATGACAACAACGTTCTTCTTGTGTTGCTTCGAATACACTTTCGTGATTGTTTCATTAGAGCTAACCAAATCATCGCAAAATAAGCCAGATTTATTAGAGTCTATTTGGAATAACTTTTTCTTCTAGTTCTTTTTTAAAGGGTTGTGGCTCATCTACTGACAACATTACAGACCAAAAATGATATTTTGCATCGAGAAATAGGTTGAGAGTTTTAAATCAAAGGTTTTTTGTCCTAAACCCTTCCAAGAAATTGGCATTGAGTTCTTTTAGCGCCAATTTATCGCAGATTTCCAATGATGGGAAGCTGGTGACGGCGGTGCGAGGTTGTCGGAGTGGACAACGCGACGAGAAAGAAGGAAAGTTCAGAATCTGAAGAACCACGCGGCGGCTGAGACGTCTCTTCACTCCATTGTGATTCAGAAGCTATTGAGCACCAAAGCCCATGTCGGTCGTCAGGTTGCCGCCACTCACCATTTCAAGCTATAGACCTATGGCTTCCGCAATCGAATGACCATCATCGACTCCGATAAAACCCTAATTTGTATGCACAATGCTTTGAATTTCATTGGCTCATTGGTCCGACAAAAGGGTCGATTACAGCATGAATGAATATGACGTCTAATGATTCTATGTTTATTATGTTGTAGACATTGCAGACGCTATAAATCTTTTGGATAAGCTCGTTGATTTGAAGTTTAATGGGGTTTTGAGCAGAGCTATGGGTTTTCATGGACCCAAGAGTAAGTGTCAATGCAAATTCCTCTAACTAACAGACCAACAAAATATGAAGTAATTATGCACTTCAAGACAGAAATCATTCTTCCCTCGACCAACAAAGCCAGAATCCATATCTGACAGTGAATAATCATCCACCTAAAACCTGTGATTCCATACTAATTCAAACTGGAAAGTAATGTGTAATGAAACCTTTCATGAAGCAGCAATCACGGGTTCATGTTTATGTTAAAGAAAAGATGCTGAAGTCAGGTAAGTTGGATGAAAGATAAGATAACACGATTGTAGAATATAGTCTCAACACCCAACGAACATCACAGAGTTTAACATAACACACAGAACAAGCATCATACATTACCATGCGACAAGAGAAAAGTACCATCATATCAGAGTTTCACTCCTTTATTTCTTTTCTATTCAAAGGCCCACTGGTTCTCCCTACGAACCTCCTCCTCTTCCTCGGGCGTAAAGTCGTTCTTGATGTTAAATGTCTTGCGGATCTCCTCAGGAGTCTTCCCCTTGATCATGTCAGCCACTGTCTGA

mRNA sequence

CATAACACCTCTCTCTGCTTTTCATTTCACCGGAATTAATGGCGAAACTTCCTTTGATCTTCGCTTTCTCTCTTGCTCTCTCCGATTTCTTCTTCTTTTCCGGCAATGCTTTTGCGCCGTCGGGATGGAACCCCGCCCACGCCACCTTCTACGGCGACAGCGACGCCTCAGGGACAATGGGCGGAGCTTGTGGGTATGGGAACTTGTACCAGACGGGTTATGGGACGAGAACGGCGGCGCTGAGTACGGCGCTGTTTAACGACGGTGCATCGTGCGGTCAATGCTTCAAGATCATTTGTGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCGTCGGTGACCGTGACGGCGACCAATTTCTGCCCGCCTAACTATGCTCTGCCCAACAACAATGGCGACATTGCAGACGCTATAAATCTTTTGGATAAGCTCGTTGATTTGAAGTTTAATGGGGTTTTGAGCAGAGCTATGGGTTTTCATGGACCCAAGAGAGTCTTCCCCTTGATCATGTCAGCCACTGTCTGA

Coding sequence (CDS)

ATGGCGAAACTTCCTTTGATCTTCGCTTTCTCTCTTGCTCTCTCCGATTTCTTCTTCTTTTCCGGCAATGCTTTTGCGCCGTCGGGATGGAACCCCGCCCACGCCACCTTCTACGGCGACAGCGACGCCTCAGGGACAATGGGCGGAGCTTGTGGGTATGGGAACTTGTACCAGACGGGTTATGGGACGAGAACGGCGGCGCTGAGTACGGCGCTGTTTAACGACGGTGCATCGTGCGGTCAATGCTTCAAGATCATTTGTGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCGTCGGTGACCGTGACGGCGACCAATTTCTGCCCGCCTAACTATGCTCTGCCCAACAACAATGGCGACATTGCAGACGCTATAAATCTTTTGGATAAGCTCGTTGATTTGAAGTTTAATGGGGTTTTGAGCAGAGCTATGGGTTTTCATGGACCCAAGAGAGTCTTCCCCTTGATCATGTCAGCCACTGTCTGA

Protein sequence

MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGDIADAINLLDKLVDLKFNGVLSRAMGFHGPKRVFPLIMSATV
Homology
[Close]
BLAST of Cp4.1LG11g02670 vs. Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.2e-42
Identity = 79/110 (71.82%), Postives = 90/110 (81.82%), Query Frame = 1 

Query: 12  LALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTA 71
           LA+    F + +AF PSG    HATFYG SDASGTMGGACGYG+LY  GYGT TAALSTA
Sbjct: 8   LAVLAALFIAVDAFRPSGLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTA 67

Query: 72  LFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
           LFNDGASCG+C++I CD+  D RWC+KGASV +TATNFCPPN+ALPNNNG
Sbjct: 68  LFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNG 117

[Close]
BLAST of Cp4.1LG11g02670 vs. Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 168.3 bits (425), Expect = 6.9e-41
Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 1 

Query: 24  AFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCF 83
           AFA SGW+   ATFYG SDASGTMGGACGYGNLY  GYGTRTAALSTALF+DGASCGQC+
Sbjct: 28  AFAASGWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCY 87

Query: 84  KIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
            + CD + DPRWC  GASVTVTATNFCPPNYALP+++G
Sbjct: 88  ALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDG 125

[Close]
BLAST of Cp4.1LG11g02670 vs. Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-40
Identity = 75/98 (76.53%), Postives = 84/98 (85.71%), Query Frame = 1 

Query: 24  AFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCF 83
           +F  SGWN A ATFYG SDASGTMGGACGYG+LY TGYGT TAALST LFNDGASCGQC+
Sbjct: 28  SFTASGWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCY 87

Query: 84  KIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
           +I+CDY+ D R+CI G SVT+TATN CPPNYALPN+ G
Sbjct: 88  RIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAG 125

[Close]
BLAST of Cp4.1LG11g02670 vs. Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 2.2e-39
Identity = 73/98 (74.49%), Postives = 83/98 (84.69%), Query Frame = 1 

Query: 24  AFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCF 83
           A  PSGW  AHATFYG +DASGTMGGACGYGNLY  GYGTRTAALSTALFNDG +CGQC+
Sbjct: 28  ALEPSGWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCY 87

Query: 84  KIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
           K++CD KTD  WC  G SVT+TATNFCPPN+ LP+++G
Sbjct: 88  KLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSG 125

[Close]
BLAST of Cp4.1LG11g02670 vs. Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 6.4e-39
Identity = 72/96 (75.00%), Postives = 81/96 (84.38%), Query Frame = 1 

Query: 26  APSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKI 85
           AP+ W  AHATFYG +DASGTMGGACGYGNLY  GYGTR AALSTALFNDGASCGQC+KI
Sbjct: 35  APTQWQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKI 94

Query: 86  ICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
            CD K  P+WC  G +VT+TATNFCPPN+ LP++NG
Sbjct: 95  ACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNG 130

[Close]
BLAST of Cp4.1LG11g02670 vs. TrEMBL
Match: Q39626_CUCSA (Expansin S2 OS=Cucumis sativus GN=Cs-EXPA2 PE=2 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 4.8e-57
Identity = 108/121 (89.26%), Postives = 111/121 (91.74%), Query Frame = 1 

Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           M KLP  FAF LALS+FFF   NAF  SGW PAHATFYG+SDASGTMGGACGYGNLYQTG
Sbjct: 1   MEKLPFAFAFFLALSNFFFLFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVT+TATNFCPPNYALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNNN 120

Query: 121 G 122
           G
Sbjct: 121 G 121

[Close]
BLAST of Cp4.1LG11g02670 vs. TrEMBL
Match: B9H521_POPTR (Alpha-expansin 11 family protein OS=Populus trichocarpa GN=POPTR_0005s26550g PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.4e-48
Identity = 92/121 (76.03%), Postives = 101/121 (83.47%), Query Frame = 1 

Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           M K  L FA  L    +   + NAFAPSGW   HATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MGKFLLTFAILLQFCSYLAINVNAFAPSGWRKGHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCG+C++I+CD++TDPRWCIKG SVT+TATNFCPPNYALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGECYRIMCDFQTDPRWCIKGKSVTITATNFCPPNYALPNNN 120

Query: 121 G 122
           G
Sbjct: 121 G 121

[Close]
BLAST of Cp4.1LG11g02670 vs. TrEMBL
Match: A0A067KL76_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08173 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.4e-48
Identity = 96/121 (79.34%), Postives = 102/121 (84.30%), Query Frame = 1 

Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           MAKL L   F      F   + NAF PSGW  AHATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MAKLLLALQFFC----FLAINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQC+KIICDY+TDPRWCIKGAS+T+TATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCYKIICDYQTDPRWCIKGASITITATNFCPPNFALPNNN 117

Query: 121 G 122
           G
Sbjct: 121 G 117

[Close]
BLAST of Cp4.1LG11g02670 vs. TrEMBL
Match: B9GQ86_POPTR (Alpha-expansin 11 family protein OS=Populus trichocarpa GN=POPTR_0002s01950g PE=4 SV=2)

HSP 1 Score: 199.1 bits (505), Expect = 4.1e-48
Identity = 92/121 (76.03%), Postives = 103/121 (85.12%), Query Frame = 1 

Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           M KL L FA  L   ++F  + NAFAPSGW   HATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MGKLLLAFAIWLQFCNYFAINVNAFAPSGWTKGHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCG+C++I+CD++TD RWCIKG SVT+TATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGECYRIMCDFQTDSRWCIKGRSVTITATNFCPPNFALPNNN 120

Query: 121 G 122
           G
Sbjct: 121 G 121

[Close]
BLAST of Cp4.1LG11g02670 vs. TrEMBL
Match: B9R8E5_RICCO (Alpha-expansin 11, putative OS=Ricinus communis GN=RCOM_1599330 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.9e-48
Identity = 92/121 (76.03%), Postives = 100/121 (82.64%), Query Frame = 1 

Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           M KL       L    F     NAF+PSGW  AHATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MVKLTFALPILLQFLCFLAIHVNAFSPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQC+KI+CDY+TDPRWCIKG+S+T+TATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCYKIMCDYQTDPRWCIKGSSITITATNFCPPNFALPNNN 120

Query: 121 G 122
           G
Sbjct: 121 G 121

[Close]
BLAST of Cp4.1LG11g02670 vs. TAIR10
Match: AT1G20190.1 (AT1G20190.1 expansin 11)

HSP 1 Score: 171.8 bits (434), Expect = 3.5e-43
Identity = 79/110 (71.82%), Postives = 90/110 (81.82%), Query Frame = 1 

Query: 12  LALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTA 71
           LA+    F + +AF PSG    HATFYG SDASGTMGGACGYG+LY  GYGT TAALSTA
Sbjct: 8   LAVLAALFIAVDAFRPSGLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTA 67

Query: 72  LFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
           LFNDGASCG+C++I CD+  D RWC+KGASV +TATNFCPPN+ALPNNNG
Sbjct: 68  LFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNG 117

[Close]
BLAST of Cp4.1LG11g02670 vs. TAIR10
Match: AT4G01630.1 (AT4G01630.1 expansin A17)

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-37
Identity = 73/115 (63.48%), Postives = 87/115 (75.65%), Query Frame = 1 

Query: 10  FSLALSDFF---FFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTA 69
           FSL ++  F   FF   +   +GW  AHATFYG SDASGTMGGACGYGNLY  GY T TA
Sbjct: 5   FSLLVAMIFSTMFFMKISSVSAGWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTA 64

Query: 70  ALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
           ALSTALFNDG SCG C++I+CD    P+WC+KG S+T+TATNFCPPN+A  ++NG
Sbjct: 65  ALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNG 119

[Close]
BLAST of Cp4.1LG11g02670 vs. TAIR10
Match: AT1G69530.3 (AT1G69530.3 expansin A1)

HSP 1 Score: 145.2 bits (365), Expect = 3.5e-35
Identity = 70/99 (70.71%), Postives = 77/99 (77.78%), Query Frame = 1 

Query: 23  NAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQC 82
           N +A  GW  AHATFYG  DASGTMGGACGYGNLY  GYGT TAALSTALFN+G SCG C
Sbjct: 20  NGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGAC 79

Query: 83  FKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
           F+I C  + D +WC+ G S+ VTATNFCPPN ALPNN G
Sbjct: 80  FEIRC--QNDGKWCLPG-SIVVTATNFCPPNNALPNNAG 115

[Close]
BLAST of Cp4.1LG11g02670 vs. TAIR10
Match: AT2G03090.1 (AT2G03090.1 expansin A15)

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-34
Identity = 69/94 (73.40%), Postives = 76/94 (80.85%), Query Frame = 1 

Query: 28  SGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKIIC 87
           +GW  AHATFYG SDASGTMGGACGYGNLY  GYGT TAALSTALFN+G SCG CF+I C
Sbjct: 28  AGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKC 87

Query: 88  DYKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
             ++D  WC+ GA + VTATNFCPPN ALPNN G
Sbjct: 88  --QSDGAWCLPGA-IIVTATNFCPPNNALPNNAG 118

[Close]
BLAST of Cp4.1LG11g02670 vs. TAIR10
Match: AT1G26770.2 (AT1G26770.2 expansin A10)

HSP 1 Score: 141.4 bits (355), Expect = 5.1e-34
Identity = 68/93 (73.12%), Postives = 74/93 (79.57%), Query Frame = 1 

Query: 29  GWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKIICD 88
           GW  AHATFYG  DASGTMGGACGYGNLY  GYGT TAALSTALFN+G SCG CF+I C+
Sbjct: 35  GWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCE 94

Query: 89  YKTDPRWCIKGASVTVTATNFCPPNYALPNNNG 122
              D +WC+ G S+ VTATNFCPPN AL NNNG
Sbjct: 95  --NDGKWCLPG-SIVVTATNFCPPNNALANNNG 124

[Close]
BLAST of Cp4.1LG11g02670 vs. NCBI nr
Match: gi|525507100|ref|NP_001267591.1| (expansin-A11-like precursor [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 6.9e-57
Identity = 108/121 (89.26%), Postives = 111/121 (91.74%), Query Frame = 1 

Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           M KLP  FAF LALS+FFF   NAF  SGW PAHATFYG+SDASGTMGGACGYGNLYQTG
Sbjct: 1   MEKLPFAFAFFLALSNFFFLFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVT+TATNFCPPNYALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNNN 120

Query: 121 G 122
           G
Sbjct: 121 G 121

[Close]
BLAST of Cp4.1LG11g02670 vs. NCBI nr
Match: gi|659089105|ref|XP_008445329.1| (PREDICTED: expansin-A11 [Cucumis melo])

HSP 1 Score: 224.2 bits (570), Expect = 1.7e-55
Identity = 108/122 (88.52%), Postives = 111/122 (90.98%), Query Frame = 1 

Query: 1   MAKLPLIFAFS-LALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQT 60
           M KLP  FAF  LALS+FFF   NAF  SGW PAHATFYG+SDASGTMGGACGYGNLYQT
Sbjct: 1   MEKLPFAFAFFFLALSNFFFIFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQT 60

Query: 61  GYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNN 120
           GYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVT+TATNFCPPNYALPNN
Sbjct: 61  GYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNN 120

Query: 121 NG 122
           NG
Sbjct: 121 NG 122

[Close]
BLAST of Cp4.1LG11g02670 vs. NCBI nr
Match: gi|802607310|ref|XP_012073733.1| (PREDICTED: expansin-A11 [Jatropha curcas])

HSP 1 Score: 199.9 bits (507), Expect = 3.4e-48
Identity = 96/121 (79.34%), Postives = 102/121 (84.30%), Query Frame = 1 

Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           MAKL L   F      F   + NAF PSGW  AHATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MAKLLLALQFFC----FLAINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQC+KIICDY+TDPRWCIKGAS+T+TATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCYKIICDYQTDPRWCIKGASITITATNFCPPNFALPNNN 117

Query: 121 G 122
           G
Sbjct: 121 G 117

[Close]
BLAST of Cp4.1LG11g02670 vs. NCBI nr
Match: gi|224085934|ref|XP_002307745.1| (alpha-expansin 11 precursor family protein [Populus trichocarpa])

HSP 1 Score: 199.9 bits (507), Expect = 3.4e-48
Identity = 92/121 (76.03%), Postives = 101/121 (83.47%), Query Frame = 1 

Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           M K  L FA  L    +   + NAFAPSGW   HATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MGKFLLTFAILLQFCSYLAINVNAFAPSGWRKGHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCG+C++I+CD++TDPRWCIKG SVT+TATNFCPPNYALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGECYRIMCDFQTDPRWCIKGKSVTITATNFCPPNYALPNNN 120

Query: 121 G 122
           G
Sbjct: 121 G 121

[Close]
BLAST of Cp4.1LG11g02670 vs. NCBI nr
Match: gi|566155770|ref|XP_002300688.2| (alpha-expansin 11 precursor family protein [Populus trichocarpa])

HSP 1 Score: 199.1 bits (505), Expect = 5.8e-48
Identity = 92/121 (76.03%), Postives = 103/121 (85.12%), Query Frame = 1 

Query: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           M KL L FA  L   ++F  + NAFAPSGW   HATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MGKLLLAFAIWLQFCNYFAINVNAFAPSGWTKGHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCG+C++I+CD++TD RWCIKG SVT+TATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGECYRIMCDFQTDSRWCIKGRSVTITATNFCPPNFALPNNN 120

Query: 121 G 122
           G
Sbjct: 121 G 121

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g02670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EXP11_ARATH6.2e-4271.82Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1[more]
EXP29_ORYSJ6.9e-4178.57Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2[more]
EXPA1_ORYSJ2.0e-4076.53Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2[more]
EXP13_ORYSJ2.2e-3974.49Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2[more]
EXP23_ORYSJ6.4e-3975.00Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2[more]
BLAST of Cp4.1LG11g02670 vs. TrEMBL
Match NameE-valueIdentityDescription
Q39626_CUCSA4.8e-5789.26Expansin S2 OS=Cucumis sativus GN=Cs-EXPA2 PE=2 SV=1[more]
B9H521_POPTR2.4e-4876.03Alpha-expansin 11 family protein OS=Populus trichocarpa GN=POPTR_0005s26550g PE=... [more]
A0A067KL76_JATCU2.4e-4879.34Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08173 PE=4 SV=1[more]
B9GQ86_POPTR4.1e-4876.03Alpha-expansin 11 family protein OS=Populus trichocarpa GN=POPTR_0002s01950g PE=... [more]
B9R8E5_RICCO6.9e-4876.03Alpha-expansin 11, putative OS=Ricinus communis GN=RCOM_1599330 PE=4 SV=1[more]
BLAST of Cp4.1LG11g02670 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G20190.13.5e-4371.82 expansin 11[more]
AT4G01630.12.9e-3763.48 expansin A17[more]
AT1G69530.33.5e-3570.71 expansin A1[more]
AT2G03090.13.0e-3473.40 expansin A15[more]
AT1G26770.25.1e-3473.12 expansin A10[more]
BLAST of Cp4.1LG11g02670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|525507100|ref|NP_001267591.1|6.9e-5789.26expansin-A11-like precursor [Cucumis sativus][more]
gi|659089105|ref|XP_008445329.1|1.7e-5588.52PREDICTED: expansin-A11 [Cucumis melo][more]
gi|802607310|ref|XP_012073733.1|3.4e-4879.34PREDICTED: expansin-A11 [Jatropha curcas][more]
gi|224085934|ref|XP_002307745.1|3.4e-4876.03alpha-expansin 11 precursor family protein [Populus trichocarpa][more]
gi|566155770|ref|XP_002300688.2|5.8e-4876.03alpha-expansin 11 precursor family protein [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0009664plant-type cell wall organization
Vocabulary: INTERPRO
TermDefinition
IPR009009RlpA-like_DPBB
IPR007118Expan_Lol_pI
IPR007112Expansin/allergen_DPBB_dom
IPR002963Expansin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009664 plant-type cell wall organization
cellular_component GO:0005618 cell wall
cellular_component GO:0005576 extracellular region
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g02670.1Cp4.1LG11g02670.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002963ExpansinPRINTSPR01226EXPANSINcoord: 89..100
score: 6.6E-16coord: 60..74
score: 6.6E-16coord: 102..112
score: 6.6
IPR007112Expansin/pollen allergen, DPBB domainSMARTSM00837dpbb_1coord: 65..159
score: 2.8
IPR007112Expansin/pollen allergen, DPBB domainPROFILEPS50842EXPANSIN_EG45coord: 48..163
score: 19
IPR007118Expansin/Lol pIPRINTSPR01225EXPANSNFAMLYcoord: 47..65
score: 7.8E-25coord: 29..44
score: 7.8E-25coord: 69..87
score: 7.8
IPR009009RlpA-like protein, double-psi beta-barrel domainGENE3DG3DSA:2.40.40.10coord: 20..114
score: 8.2
IPR009009RlpA-like protein, double-psi beta-barrel domainPFAMPF03330DPBB_1coord: 65..116
score: 2.6
IPR009009RlpA-like protein, double-psi beta-barrel domainunknownSSF50685Barwin-like endoglucanasescoord: 18..120
score: 2.3
NoneNo IPR availablePANTHERPTHR31867FAMILY NOT NAMEDcoord: 1..121
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g02670Cla022406Watermelon (97103) v1cpewmB101
Cp4.1LG11g02670ClCG08G014110Watermelon (Charleston Gray)cpewcgB125
Cp4.1LG11g02670Lsi08G013020Bottle gourd (USVL1VR-Ls)cpelsiB100
Cp4.1LG11g02670MELO3C011350.2Melon (DHL92) v3.6.1cpemedB112
Cp4.1LG11g02670CsaV3_2G024320Cucumber (Chinese Long) v3cpecucB0109
Cp4.1LG11g02670Bhi04G000101Wax gourdcpewgoB0142
Cp4.1LG11g02670CsGy2G016740Cucumber (Gy14) v2cgybcpeB165
Cp4.1LG11g02670Carg03980Silver-seed gourdcarcpeB1352
Cp4.1LG11g02670Carg09390Silver-seed gourdcarcpeB0199
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG11g02670Cp4.1LG07g03560Cucurbita pepo (Zucchini)cpecpeB146
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g02670Cucurbita moschata (Rifu)cmocpeB720
Cp4.1LG11g02670Wild cucumber (PI 183967)cpecpiB096
Cp4.1LG11g02670Wild cucumber (PI 183967)cpecpiB124
Cp4.1LG11g02670Cucumber (Chinese Long) v2cpecuB099
Cp4.1LG11g02670Watermelon (Charleston Gray)cpewcgB106
Cp4.1LG11g02670Watermelon (97103) v1cpewmB115
Cp4.1LG11g02670Melon (DHL92) v3.5.1cpemeB089
Cp4.1LG11g02670Cucumber (Gy14) v2cgybcpeB716
Cp4.1LG11g02670Cucumber (Gy14) v2cgybcpeB897
Cp4.1LG11g02670Cucumber (Chinese Long) v3cpecucB0133
Cp4.1LG11g02670Wax gourdcpewgoB0153
Cp4.1LG11g02670Cucurbita pepo (Zucchini)cpecpeB061
Cp4.1LG11g02670Cucurbita pepo (Zucchini)cpecpeB110
Cp4.1LG11g02670Cucurbita pepo (Zucchini)cpecpeB112
Cp4.1LG11g02670Cucumber (Gy14) v1cgycpeB1040
Cp4.1LG11g02670Cucurbita maxima (Rimu)cmacpeB179
Cp4.1LG11g02670Cucurbita maxima (Rimu)cmacpeB766
Cp4.1LG11g02670Cucurbita moschata (Rifu)cmocpeB154