ClCG08G014110 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G014110
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionExpansin
LocationCG_Chr08 : 26945489 .. 26947942 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAACTTTGTTTAGCATTTGCTTTCTCTCTCGCTCTCTCCAACTTCTTCTTCATTTCTGTCAATGCATTTACCGCGTCGGGATGGAACCCCGCCCATGCTACTTTCTATGGGGATAGCGATGCCTCGGGAACAATGGGTAAGTAATAACATTCCTCTAAACTAACATGTTTCTGTTTCTGTTTCTCATTTCTTCTTTTTTTTTTCAATTTTTTTTTTAAATATTGTTACTAAAATAATACATCTAATACTGTTTTTGAAAATTTAATTGGTAAACAATTTTGAGAAAGTTTTATAAAAGACACCAGCAAATAATATTTATTTTTATACACTAATTGACGACAACATATAACTACAATGGTTAATATAATATATTTTCATCAGTCTATTTCGACCACATTTATGATGTGTTTAGAATACATTTTCAAATATTTAATTTTAAAATTAAGTTATTTTAAGTGAATCCAAAACACTCAATTTTGAAATGGTAGTGGTGAAATTACGAAACTACCCTCAAAAGAAATTACACCAATCCAACCCCATCTTCCAAGAAAAAGAAAAGTTCTCACTTTCTTTGTTTCCCATTTTGTTTATAGACAAACATATTTATTTATGTTTTTATATATATTGAATAAACATAGATATATTGTGAATGTTGGTGGTTGTAGGTGGAGCTTGTGGGTATGGGAATTTGTACCAGACGGGTTATGGAACAAGGACGGCGGCGCTGAGCACCGCGTTGTTCAACGACGGCGCGTCGTGTGGTCAGTGTTTCAAGATGATGTGTGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCGTCGGTGACGGTGACGGCCACCAATTTTTGCCCACCAAACTACGCTCTCCCAAACAACAATGGCGGATGGTGTAACCCTCCGCTTAAACATTTCGACATGGCTCAGCCTGCTTGGGAGAAGATCGGCATTTACAGAGGCGGAATCATCCCTGTTCTCTACCAAAGGTAACCTCGATTCCGTCTTTTCACTCTACAATTAAATTATAAATTTCGTCCCTATAATTTTTTTTTAAAAAATTAAAATTTAGTCCTTGTCGTTTTTAATTAGAATTTAGCCTTTATAATTTGATAAAACACTTATAAAATGTCTTTATAGTAGAGATTATATCTGTAGATTTTATTAAACTAAAATGACTAAATTCTAATTTCCAAAACAATAAAGACTAAATTCTAAATTTTCTAAACTATAAGAATTAGACTTGTAATTAAACCCTTTAGAATTGTTTGAAATATCTCAATACATAAAAGCTTCTTAAACTTTTAACGTAGAGTCTAATAATTTGTTTTTCAGCTGTTGATCGAGGATAAGATGAGAAAATTCGCAAACTTTAAAAAATTTACTCTTCTCATTACTAATTGGTTTTGAGATAGAATTTTATATTTATTGAATATGGTATATTAGAATACAGGTATTCGGTTAAATAAAAGTTGGAATATGATCCATGAACGGTAGACCCAAAGAGGTACCATCTTAATAAGACATGTTGTGGGATTGATTTGGAGATGAAATATTGTGCTTATCTAATATTATCTTTCAATTTTGTGTGCATAAATTTGCGTTGGTCTATTGTTTTTTAAATAATAAAAAAAACAAAGGGATAATATAATTTATGAGTGTTAATATATGAATTTGTATCTAGTCACTTAAGTTGGTTGAGGTGGGTATTGAGTGACCATATTTTAAGTTACAAAATAATAACAAAGTAATTGGTTTTGTGAAAAAGTCAATGGAAATAACTTAGACATTTTGAAAGTTTAATACGTATCAGTAAAATAAACTTGAAAGTTTACCGACTAAAATAAGTGCAGAATTCAATTGATGAAAACATTGAAAACTCAAAAATGTTATGTTTCATAAACATCCTCTCCGAACAAAAACTTTATGTATTAATTTGATCGAATGAATCTTAAATTGACGAAAATGTAAGCTATATCATTAACGAAATTATTTTTTGAATGATAGAGTTCCCTGCGTAAAGAAAGGAGGTGTGAGATTCACAGTAAATGGAAGAGATTATTTTGAACTAGTTTTGATAAGCAATGTGGGAGGAGCTGGGGACATCAAATCAGTGTCTATTAAAGGGTCAAAATCCAACAATTGGACCCCAATGTCAAGGAATTGGGGGGCCAATTGGCAGTCCAATTCCTATCTAAATGGCCAATCTTTGTCCTTCAAGGTCACCACAAGTGATGGCCAAACCCAAGTTTTCAACAATGTTGTACCTTCATCTTGGAGATTTGGCCAAACTTTTGCAAGCAAGGTCCAATTCAGTTGAGAAAGACCCCGCACGGGTTGAGGGTTGTGGGTTTACGGGTAATCGGATTGGCCGAGGCGTGCCAAAGTGGTTTTTTTTAATCTACGGAAGCAGCCCGCCACCTTATTTCAGCTATCTGGTTACCGTCTAA

mRNA sequence

ATGGAGAAACTTTGTTTAGCATTTGCTTTCTCTCTCGCTCTCTCCAACTTCTTCTTCATTTCTGTCAATGCATTTACCGCGTCGGGATGGAACCCCGCCCATGCTACTTTCTATGGGGATAGCGATGCCTCGGGAACAATGGGTGGAGCTTGTGGGTATGGGAATTTGTACCAGACGGGTTATGGAACAAGGACGGCGGCGCTGAGCACCGCGTTGTTCAACGACGGCGCGTCGTGTGGTCAGTGTTTCAAGATGATGTGTGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCGTCGGTGACGGTGACGGCCACCAATTTTTGCCCACCAAACTACGCTCTCCCAAACAACAATGGCGGATGGTCACCACAAGTGATGGCCAAACCCAAGTTTTCAACAATGTTGTACCTTCATCTTGGAGATTTGGCCAAACTTTTGCAAGCAAGGTCCAATTCAGTTGAGAAAGACCCCGCACGGGTTGAGGGTTGTGGGTTTACGGGTAATCGGATTGGCCGAGGCGTGCCAAAGTGGTTTTTTTTAATCTACGGAAGCAGCCCGCCACCTTATTTCAGCTATCTGGTTACCGTCTAA

Coding sequence (CDS)

ATGGAGAAACTTTGTTTAGCATTTGCTTTCTCTCTCGCTCTCTCCAACTTCTTCTTCATTTCTGTCAATGCATTTACCGCGTCGGGATGGAACCCCGCCCATGCTACTTTCTATGGGGATAGCGATGCCTCGGGAACAATGGGTGGAGCTTGTGGGTATGGGAATTTGTACCAGACGGGTTATGGAACAAGGACGGCGGCGCTGAGCACCGCGTTGTTCAACGACGGCGCGTCGTGTGGTCAGTGTTTCAAGATGATGTGTGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCGTCGGTGACGGTGACGGCCACCAATTTTTGCCCACCAAACTACGCTCTCCCAAACAACAATGGCGGATGGTCACCACAAGTGATGGCCAAACCCAAGTTTTCAACAATGTTGTACCTTCATCTTGGAGATTTGGCCAAACTTTTGCAAGCAAGGTCCAATTCAGTTGAGAAAGACCCCGCACGGGTTGAGGGTTGTGGGTTTACGGGTAATCGGATTGGCCGAGGCGTGCCAAAGTGGTTTTTTTTAATCTACGGAAGCAGCCCGCCACCTTATTTCAGCTATCTGGTTACCGTCTAA

Protein sequence

MEKLCLAFAFSLALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGGWSPQVMAKPKFSTMLYLHLGDLAKLLQARSNSVEKDPARVEGCGFTGNRIGRGVPKWFFLIYGSSPPPYFSYLVTV
Homology
[Close]
BLAST of ClCG08G014110 vs. Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.5e-45
Identity = 81/112 (72.32%), Postives = 91/112 (81.25%), Query Frame = 1 

Query: 12  LALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTA 71
           LA+    FI+V+AF  SG    HATFYG SDASGTMGGACGYG+LY  GYGT TAALSTA
Sbjct: 8   LAVLAALFIAVDAFRPSGLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTA 67

Query: 72  LFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGGW 124
           LFNDGASCG+C+++ CD+  D RWC+KGASV +TATNFCPPN+ALPNNNGGW
Sbjct: 68  LFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGW 119

[Close]
BLAST of ClCG08G014110 vs. Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 7.3e-45
Identity = 79/100 (79.00%), Postives = 86/100 (86.00%), Query Frame = 1 

Query: 24  AFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCF 83
           +FTASGWN A ATFYG SDASGTMGGACGYG+LY TGYGT TAALST LFNDGASCGQC+
Sbjct: 28  SFTASGWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCY 87

Query: 84  KMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGGW 124
           ++MCDY+ D R+CI G SVT+TATN CPPNYALPN+ GGW
Sbjct: 88  RIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGW 127

[Close]
BLAST of ClCG08G014110 vs. Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 181.4 bits (459), Expect = 9.6e-45
Identity = 80/103 (77.67%), Postives = 87/103 (84.47%), Query Frame = 1 

Query: 21  SVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCG 80
           +V AF ASGW+   ATFYG SDASGTMGGACGYGNLY  GYGTRTAALSTALF+DGASCG
Sbjct: 25  TVEAFAASGWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCG 84

Query: 81  QCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGGW 124
           QC+ + CD + DPRWC  GASVTVTATNFCPPNYALP+++GGW
Sbjct: 85  QCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGW 127

[Close]
BLAST of ClCG08G014110 vs. Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 171.8 bits (434), Expect = 7.6e-42
Identity = 75/102 (73.53%), Postives = 83/102 (81.37%), Query Frame = 1 

Query: 22  VNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQ 81
           V A   SGW  AHATFYG +DASGTMGGACGYGNLY  GYGTRTAALSTALFNDG +CGQ
Sbjct: 26  VGALEPSGWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQ 85

Query: 82  CFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGGW 124
           C+K++CD KTD  WC  G SVT+TATNFCPPN+ LP+++GGW
Sbjct: 86  CYKLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGW 127

[Close]
BLAST of ClCG08G014110 vs. Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 6.4e-41
Identity = 71/103 (68.93%), Postives = 86/103 (83.50%), Query Frame = 1 

Query: 21  SVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCG 80
           S+ A T +GW+   ATFYG SDASGTMGGACGYGNLY +GYGT TAALS+ALFNDGASCG
Sbjct: 23  SLIAPTTAGWSSGTATFYGGSDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCG 82

Query: 81  QCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGGW 124
           QC+++ CD++ +PRWC++G +VT+T TN CPPNYAL +N+GGW
Sbjct: 83  QCYQIACDHQAEPRWCLQGRTVTITGTNLCPPNYALSSNDGGW 125

[Close]
BLAST of ClCG08G014110 vs. TrEMBL
Match: Q39626_CUCSA (Expansin S2 OS=Cucumis sativus GN=Cs-EXPA2 PE=2 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.2e-63
Identity = 113/123 (91.87%), Postives = 118/123 (95.93%), Query Frame = 1 

Query: 1   MEKLCLAFAFSLALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           MEKL  AFAF LALSNFFF+ VNAFTASGW PAHATFYG+SDASGTMGGACGYGNLYQTG
Sbjct: 1   MEKLPFAFAFFLALSNFFFLFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQCFK++CDYKTDPRWCIKGASVT+TATNFCPPNYALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNNN 120

Query: 121 GGW 124
           GGW
Sbjct: 121 GGW 123

[Close]
BLAST of ClCG08G014110 vs. TrEMBL
Match: B9GQ86_POPTR (Alpha-expansin 11 family protein OS=Populus trichocarpa GN=POPTR_0002s01950g PE=4 SV=2)

HSP 1 Score: 216.5 bits (550), Expect = 3.0e-53
Identity = 96/123 (78.05%), Postives = 106/123 (86.18%), Query Frame = 1 

Query: 1   MEKLCLAFAFSLALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           M KL LAFA  L   N+F I+VNAF  SGW   HATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MGKLLLAFAIWLQFCNYFAINVNAFAPSGWTKGHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCG+C+++MCD++TD RWCIKG SVT+TATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGECYRIMCDFQTDSRWCIKGRSVTITATNFCPPNFALPNNN 120

Query: 121 GGW 124
           GGW
Sbjct: 121 GGW 123

[Close]
BLAST of ClCG08G014110 vs. TrEMBL
Match: A0A067KL76_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08173 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.6e-53
Identity = 98/123 (79.67%), Postives = 106/123 (86.18%), Query Frame = 1 

Query: 1   MEKLCLAFAFSLALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           M KL LA  F      F  I+VNAFT SGW  AHATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MAKLLLALQFFC----FLAINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQC+K++CDY+TDPRWCIKGAS+T+TATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCYKIICDYQTDPRWCIKGASITITATNFCPPNFALPNNN 119

Query: 121 GGW 124
           GGW
Sbjct: 121 GGW 119

[Close]
BLAST of ClCG08G014110 vs. TrEMBL
Match: B9R8E5_RICCO (Alpha-expansin 11, putative OS=Ricinus communis GN=RCOM_1599330 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-52
Identity = 96/123 (78.05%), Postives = 104/123 (84.55%), Query Frame = 1 

Query: 1   MEKLCLAFAFSLALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           M KL  A    L    F  I VNAF+ SGW  AHATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MVKLTFALPILLQFLCFLAIHVNAFSPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQC+K+MCDY+TDPRWCIKG+S+T+TATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCYKIMCDYQTDPRWCIKGSSITITATNFCPPNFALPNNN 120

Query: 121 GGW 124
           GGW
Sbjct: 121 GGW 123

[Close]
BLAST of ClCG08G014110 vs. TrEMBL
Match: B9H521_POPTR (Alpha-expansin 11 family protein OS=Populus trichocarpa GN=POPTR_0005s26550g PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.5e-52
Identity = 94/123 (76.42%), Postives = 104/123 (84.55%), Query Frame = 1 

Query: 1   MEKLCLAFAFSLALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           M K  L FA  L   ++  I+VNAF  SGW   HATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MGKFLLTFAILLQFCSYLAINVNAFAPSGWRKGHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCG+C+++MCD++TDPRWCIKG SVT+TATNFCPPNYALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGECYRIMCDFQTDPRWCIKGKSVTITATNFCPPNYALPNNN 120

Query: 121 GGW 124
           GGW
Sbjct: 121 GGW 123

[Close]
BLAST of ClCG08G014110 vs. TAIR10
Match: AT1G20190.1 (AT1G20190.1 expansin 11)

HSP 1 Score: 184.1 bits (466), Expect = 8.3e-47
Identity = 81/112 (72.32%), Postives = 91/112 (81.25%), Query Frame = 1 

Query: 12  LALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTA 71
           LA+    FI+V+AF  SG    HATFYG SDASGTMGGACGYG+LY  GYGT TAALSTA
Sbjct: 8   LAVLAALFIAVDAFRPSGLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTA 67

Query: 72  LFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGGW 124
           LFNDGASCG+C+++ CD+  D RWC+KGASV +TATNFCPPN+ALPNNNGGW
Sbjct: 68  LFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGW 119

[Close]
BLAST of ClCG08G014110 vs. TAIR10
Match: AT4G01630.1 (AT4G01630.1 expansin A17)

HSP 1 Score: 167.9 bits (424), Expect = 6.2e-42
Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 1 

Query: 11  SLALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALST 70
           ++  S  FF+ +++ +A GW  AHATFYG SDASGTMGGACGYGNLY  GY T TAALST
Sbjct: 10  AMIFSTMFFMKISSVSA-GWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALST 69

Query: 71  ALFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGGW----SPQ 130
           ALFNDG SCG C++++CD    P+WC+KG S+T+TATNFCPPN+A  ++NGGW     P 
Sbjct: 70  ALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPH 129

Query: 131 V-MAKPKFSTM 137
             MA+P F T+
Sbjct: 130 FDMAQPAFLTI 139

[Close]
BLAST of ClCG08G014110 vs. TAIR10
Match: AT1G69530.3 (AT1G69530.3 expansin A1)

HSP 1 Score: 158.7 bits (400), Expect = 3.7e-39
Identity = 76/120 (63.33%), Postives = 84/120 (70.00%), Query Frame = 1 

Query: 12  LALSNFFFIS--------VNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGT 71
           +AL  F FI+        VN +   GW  AHATFYG  DASGTMGGACGYGNLY  GYGT
Sbjct: 1   MALVTFLFIATLGAMTSHVNGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGT 60

Query: 72  RTAALSTALFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGGW 124
            TAALSTALFN+G SCG CF++ C  + D +WC+ G S+ VTATNFCPPN ALPNN GGW
Sbjct: 61  NTAALSTALFNNGLSCGACFEIRC--QNDGKWCLPG-SIVVTATNFCPPNNALPNNAGGW 117

[Close]
BLAST of ClCG08G014110 vs. TAIR10
Match: AT5G05290.1 (AT5G05290.1 expansin A2)

HSP 1 Score: 156.4 bits (394), Expect = 1.9e-38
Identity = 71/113 (62.83%), Postives = 81/113 (71.68%), Query Frame = 1 

Query: 11  SLALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALST 70
           SL   NF   S+N+    GW   HATFYG +DASGTMGGACGYGNL+  GYG +TAALST
Sbjct: 13  SLCTLNFCLYSINSDDNGGWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALST 72

Query: 71  ALFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGGW 124
           ALFN G  CG CF++ C+   DP WCI G S+ V+ATNFCPPN+AL N+NGGW
Sbjct: 73  ALFNSGQKCGACFELQCE--DDPEWCIPG-SIIVSATNFCPPNFALANDNGGW 122

[Close]
BLAST of ClCG08G014110 vs. TAIR10
Match: AT2G28950.1 (AT2G28950.1 expansin A6)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-37
Identity = 67/100 (67.00%), Postives = 77/100 (77.00%), Query Frame = 1 

Query: 25  FTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFK 84
           +   GW  AHATFYG SDASGTMGGACGYGNLY  GYG  TAALSTALFN+G SCG CF+
Sbjct: 26  YNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFE 85

Query: 85  MMCDYKTDPRWCIKGA-SVTVTATNFCPPNYALPNNNGGW 124
           + C   +DP+WC  G+ S+ +TATNFCPPN+A P++NGGW
Sbjct: 86  LKC--ASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGW 123

[Close]
BLAST of ClCG08G014110 vs. NCBI nr
Match: gi|525507100|ref|NP_001267591.1| (expansin-A11-like precursor [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 4.6e-63
Identity = 113/123 (91.87%), Postives = 118/123 (95.93%), Query Frame = 1 

Query: 1   MEKLCLAFAFSLALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           MEKL  AFAF LALSNFFF+ VNAFTASGW PAHATFYG+SDASGTMGGACGYGNLYQTG
Sbjct: 1   MEKLPFAFAFFLALSNFFFLFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQCFK++CDYKTDPRWCIKGASVT+TATNFCPPNYALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNNN 120

Query: 121 GGW 124
           GGW
Sbjct: 121 GGW 123

[Close]
BLAST of ClCG08G014110 vs. NCBI nr
Match: gi|659089105|ref|XP_008445329.1| (PREDICTED: expansin-A11 [Cucumis melo])

HSP 1 Score: 245.7 bits (626), Expect = 6.6e-62
Identity = 114/124 (91.94%), Postives = 118/124 (95.16%), Query Frame = 1 

Query: 1   MEKLCLAFAFS-LALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQT 60
           MEKL  AFAF  LALSNFFFI VNAFTASGW PAHATFYG+SDASGTMGGACGYGNLYQT
Sbjct: 1   MEKLPFAFAFFFLALSNFFFIFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQT 60

Query: 61  GYGTRTAALSTALFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNN 120
           GYGTRTAALSTALFNDGASCGQCFK++CDYKTDPRWCIKGASVT+TATNFCPPNYALPNN
Sbjct: 61  GYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNN 120

Query: 121 NGGW 124
           NGGW
Sbjct: 121 NGGW 124

[Close]
BLAST of ClCG08G014110 vs. NCBI nr
Match: gi|566155770|ref|XP_002300688.2| (alpha-expansin 11 precursor family protein [Populus trichocarpa])

HSP 1 Score: 216.5 bits (550), Expect = 4.3e-53
Identity = 96/123 (78.05%), Postives = 106/123 (86.18%), Query Frame = 1 

Query: 1   MEKLCLAFAFSLALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           M KL LAFA  L   N+F I+VNAF  SGW   HATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MGKLLLAFAIWLQFCNYFAINVNAFAPSGWTKGHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCG+C+++MCD++TD RWCIKG SVT+TATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGECYRIMCDFQTDSRWCIKGRSVTITATNFCPPNFALPNNN 120

Query: 121 GGW 124
           GGW
Sbjct: 121 GGW 123

[Close]
BLAST of ClCG08G014110 vs. NCBI nr
Match: gi|802607310|ref|XP_012073733.1| (PREDICTED: expansin-A11 [Jatropha curcas])

HSP 1 Score: 215.3 bits (547), Expect = 9.5e-53
Identity = 98/123 (79.67%), Postives = 106/123 (86.18%), Query Frame = 1 

Query: 1   MEKLCLAFAFSLALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           M KL LA  F      F  I+VNAFT SGW  AHATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MAKLLLALQFFC----FLAINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQC+K++CDY+TDPRWCIKGAS+T+TATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCYKIICDYQTDPRWCIKGASITITATNFCPPNFALPNNN 119

Query: 121 GGW 124
           GGW
Sbjct: 121 GGW 119

[Close]
BLAST of ClCG08G014110 vs. NCBI nr
Match: gi|255539046|ref|XP_002510588.1| (PREDICTED: expansin-A11 [Ricinus communis])

HSP 1 Score: 214.5 bits (545), Expect = 1.6e-52
Identity = 96/123 (78.05%), Postives = 104/123 (84.55%), Query Frame = 1 

Query: 1   MEKLCLAFAFSLALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60
           M KL  A    L    F  I VNAF+ SGW  AHATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MVKLTFALPILLQFLCFLAIHVNAFSPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 61  YGTRTAALSTALFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120
           YGTRTAALSTALFNDGASCGQC+K+MCDY+TDPRWCIKG+S+T+TATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCYKIMCDYQTDPRWCIKGSSITITATNFCPPNFALPNNN 120

Query: 121 GGW 124
           GGW
Sbjct: 121 GGW 123

The following BLAST results are available for this feature:
BLAST of ClCG08G014110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EXP11_ARATH1.5e-4572.32Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1[more]
EXPA1_ORYSJ7.3e-4579.00Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2[more]
EXP29_ORYSJ9.6e-4577.67Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2[more]
EXP13_ORYSJ7.6e-4273.53Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2[more]
EXP15_ORYSJ6.4e-4168.93Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2[more]
BLAST of ClCG08G014110 vs. TrEMBL
Match NameE-valueIdentityDescription
Q39626_CUCSA3.2e-6391.87Expansin S2 OS=Cucumis sativus GN=Cs-EXPA2 PE=2 SV=1[more]
B9GQ86_POPTR3.0e-5378.05Alpha-expansin 11 family protein OS=Populus trichocarpa GN=POPTR_0002s01950g PE=... [more]
A0A067KL76_JATCU6.6e-5379.67Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08173 PE=4 SV=1[more]
B9R8E5_RICCO1.1e-5278.05Alpha-expansin 11, putative OS=Ricinus communis GN=RCOM_1599330 PE=4 SV=1[more]
B9H521_POPTR1.5e-5276.42Alpha-expansin 11 family protein OS=Populus trichocarpa GN=POPTR_0005s26550g PE=... [more]
BLAST of ClCG08G014110 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G20190.18.3e-4772.32 expansin 11[more]
AT4G01630.16.2e-4259.54 expansin A17[more]
AT1G69530.33.7e-3963.33 expansin A1[more]
AT5G05290.11.9e-3862.83 expansin A2[more]
AT2G28950.11.6e-3767.00 expansin A6[more]
BLAST of ClCG08G014110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|525507100|ref|NP_001267591.1|4.6e-6391.87expansin-A11-like precursor [Cucumis sativus][more]
gi|659089105|ref|XP_008445329.1|6.6e-6291.94PREDICTED: expansin-A11 [Cucumis melo][more]
gi|566155770|ref|XP_002300688.2|4.3e-5378.05alpha-expansin 11 precursor family protein [Populus trichocarpa][more]
gi|802607310|ref|XP_012073733.1|9.5e-5379.67PREDICTED: expansin-A11 [Jatropha curcas][more]
gi|255539046|ref|XP_002510588.1|1.6e-5278.05PREDICTED: expansin-A11 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002963Expansin
IPR007112Expansin/allergen_DPBB_dom
IPR007118Expan_Lol_pI
IPR009009RlpA-like_DPBB
Vocabulary: Biological Process
TermDefinition
GO:0009664plant-type cell wall organization
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009664 plant-type cell wall organization
cellular_component GO:0005618 cell wall
cellular_component GO:0005576 extracellular region
cellular_component GO:0016020 membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G014110.1ClCG08G014110.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002963ExpansinPRINTSPR01226EXPANSINcoord: 89..100
score: 1.0E-15coord: 102..112
score: 1.0E-15coord: 60..74
score: 1.0
IPR007112Expansin/pollen allergen, DPBB domainSMARTSM00837dpbb_1coord: 65..148
score: 3.3
IPR007112Expansin/pollen allergen, DPBB domainPROFILEPS50842EXPANSIN_EG45coord: 48..170
score: 20
IPR007118Expansin/Lol pIPRINTSPR01225EXPANSNFAMLYcoord: 29..44
score: 9.6E-25coord: 47..65
score: 9.6E-25coord: 69..87
score: 9.6
IPR009009RlpA-like protein, double-psi beta-barrel domainGENE3DG3DSA:2.40.40.10coord: 17..136
score: 3.7
IPR009009RlpA-like protein, double-psi beta-barrel domainPFAMPF03330DPBB_1coord: 65..112
score: 6.2
IPR009009RlpA-like protein, double-psi beta-barrel domainunknownSSF50685Barwin-like endoglucanasescoord: 18..127
score: 6.28
NoneNo IPR availablePANTHERPTHR31867FAMILY NOT NAMEDcoord: 1..123
score: 3.6
NoneNo IPR availablePANTHERPTHR31867:SF4EXPANSIN-A11coord: 1..123
score: 3.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG08G014110Cla022406Watermelon (97103) v1wcgwmB400
ClCG08G014110Cla97C08G157680Watermelon (97103) v2wcgwmbB336
ClCG08G014110Bhi04G000101Wax gourdwcgwgoB613
ClCG08G014110CSPI02G16750Wild cucumber (PI 183967)cpiwcgB173
ClCG08G014110Cucsa.393920Cucumber (Gy14) v1cgywcgB675
ClCG08G014110CmaCh12G003950Cucurbita maxima (Rimu)cmawcgB169
ClCG08G014110CmaCh05G003230Cucurbita maxima (Rimu)cmawcgB712
ClCG08G014110CmoCh05G003240Cucurbita moschata (Rifu)cmowcgB716
ClCG08G014110CmoCh12G003460Cucurbita moschata (Rifu)cmowcgB161
ClCG08G014110Lsi08G013020Bottle gourd (USVL1VR-Ls)lsiwcgB438
ClCG08G014110Cp4.1LG11g02670Cucurbita pepo (Zucchini)cpewcgB125
ClCG08G014110Cp4.1LG07g03560Cucurbita pepo (Zucchini)cpewcgB748
ClCG08G014110CsGy2G016740Cucumber (Gy14) v2cgybwcgB156
ClCG08G014110MELO3C011350.2Melon (DHL92) v3.6.1medwcgB292
ClCG08G014110Carg03980Silver-seed gourdcarwcgB0958
ClCG08G014110Carg09390Silver-seed gourdcarwcgB0137
ClCG08G014110CsaV3_2G024320Cucumber (Chinese Long) v3cucwcgB177
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G014110Cucumber (Gy14) v1cgywcgB031
ClCG08G014110Cucurbita moschata (Rifu)cmowcgB601
ClCG08G014110Wild cucumber (PI 183967)cpiwcgB539
ClCG08G014110Wild cucumber (PI 183967)cpiwcgB598
ClCG08G014110Cucumber (Chinese Long) v2cuwcgB170
ClCG08G014110Cucumber (Chinese Long) v2cuwcgB512
ClCG08G014110Melon (DHL92) v3.5.1mewcgB299
ClCG08G014110Melon (DHL92) v3.5.1mewcgB547
ClCG08G014110Watermelon (97103) v1wcgwmB420
ClCG08G014110Watermelon (97103) v1wcgwmB422
ClCG08G014110Bottle gourd (USVL1VR-Ls)lsiwcgB116
ClCG08G014110Bottle gourd (USVL1VR-Ls)lsiwcgB151
ClCG08G014110Cucumber (Gy14) v2cgybwcgB471
ClCG08G014110Cucumber (Gy14) v2cgybwcgB530
ClCG08G014110Melon (DHL92) v3.6.1medwcgB545
ClCG08G014110Silver-seed gourdcarwcgB0401
ClCG08G014110Cucumber (Chinese Long) v3cucwcgB532
ClCG08G014110Watermelon (97103) v2wcgwmbB317
ClCG08G014110Watermelon (97103) v2wcgwmbB324
ClCG08G014110Wax gourdwcgwgoB641
ClCG08G014110Watermelon (Charleston Gray)wcgwcgB115
ClCG08G014110Watermelon (Charleston Gray)wcgwcgB137