Cp4.1LG07g03560 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g03560
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionExpansin
LocationCp4.1LG07 : 2266900 .. 2268151 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTCTTTCGCATTCGCTTTCTCTCTCGTTCTCTGCAACTTCCTCTTTGCTGCCGATGCTTTTAGTGCATCGGGATGGTATCCCGCTCATGCTACGTTCTACGGCGGTAGCGATGCGTCGGGGACAATGGGTAAGTAAACGACTTTGTTTCGTAATGTTTCTGTTTCTTGTTTTTTTTTTGGTTGAACATACGTTTAATAATTATTTGTGCACGTGAAAATTGAATTTTTCCTTTCCCAATTGACGTGGGACCCCCCAATCCATCTTCTTTCGGGGCCAACGTCCTTGCTGGAACACCGCCTTGTGTCCATCTCCCTTTGGGGCTCAGTCTCCTTGCTGGCACATCCCCTTGTGTCCACTCCCCTTTGGGGCTCAGTCTTCTTGCTGGCACATGCCTTGTGTGCCACCTCCATTTGGGGCTCAGCCTAACACACCTTGTTGGCATATCGTCTTGTGTCCACATTCTTTTAGGGCTCAGCCTCCTGGCACGCAACCTTGTGTCCACAGCCTTTTGGGGTAGGGGCTCAACCTCGTTGCTAGTACACATTGACTAATGTCTACCTCCCTAAGGGCTCAACCTCTTTGCAGGCACATTGACTTATGTCTTGACTCTAATACCATTTGTAAAAGTCAAAACCCACCAGTAGCAAATATGGTCCATTTTGGGTTTTCCTCTCGAGTTGTCTCCGTAGGTTTTTAAAACTTATCTACTCGAGAGAGGTTTCCACAACCTTATAAATAATGTTTTGTTCTCCTCCCATCACGAACATAATGATTTTTTTTTTTTTTAATTAATAGATAATTTATATTTTTCACCTTAATAAATTTAATAATATTTGGTAAATAAAAAATATAATATTATAATCGTAATTTTTTAAAAATTCAAATTTTAATATTAAAATTTAGTCTTTACATTAAAAAAATATTTATTTATTTAGTAAGCAAATAAATATATATAATATAACAAATTTTCCTTCCATGGTTCACTAATTTTGTCGCCGGCCAAACCATCTTGTTGACCGTTGCAGGAGGAGCTTGTGGGTATGGGAACTTGTACGACACGGGTTACGGGACAAGCACGGCAGCGCTGAGCACCGCGCTGTTCAACGACGGAGCATCCTGCGGGCAGTGCATCAAGATCACGTGCGATTACAAGACCGACCCCCGTTGGTGCGTCAAAGGGGCGTCGGTGACCGTAACAGCCACCAATTTTTGCCCACCAAACTTCGCTCTCCCCAACAACAACGGCGGA

mRNA sequence

CATTCTTTCGCATTCGCTTTCTCTCTCGTTCTCTGCAACTTCCTCTTTGCTGCCGATGCTTTTAGTGCATCGGGATGGTATCCCGCTCATGCTACGTTCTACGGCGGTAGCGATGCGTCGGGGACAATGGGAGGAGCTTGTGGGTATGGGAACTTGTACGACACGGGTTACGGGACAAGCACGGCAGCGCTGAGCACCGCGCTGTTCAACGACGGAGCATCCTGCGGGCAGTGCATCAAGATCACGTGCGATTACAAGACCGACCCCCGTTGGTGCGTCAAAGGGGCGTCGGTGACCGTAACAGCCACCAATTTTTGCCCACCAAACTTCGCTCTCCCCAACAACAACGGCGGA

Coding sequence (CDS)

CATTCTTTCGCATTCGCTTTCTCTCTCGTTCTCTGCAACTTCCTCTTTGCTGCCGATGCTTTTAGTGCATCGGGATGGTATCCCGCTCATGCTACGTTCTACGGCGGTAGCGATGCGTCGGGGACAATGGGAGGAGCTTGTGGGTATGGGAACTTGTACGACACGGGTTACGGGACAAGCACGGCAGCGCTGAGCACCGCGCTGTTCAACGACGGAGCATCCTGCGGGCAGTGCATCAAGATCACGTGCGATTACAAGACCGACCCCCGTTGGTGCGTCAAAGGGGCGTCGGTGACCGTAACAGCCACCAATTTTTGCCCACCAAACTTCGCTCTCCCCAACAACAACGGCGGA

Protein sequence

HSFAFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG
Homology
[Close]
BLAST of Cp4.1LG07g03560 vs. Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.0e-43
Identity = 83/109 (76.15%), Postives = 89/109 (81.65%), Query Frame = 1 

Query: 10  VLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTAALSTALF 69
           VL     A DAF  SG    HATFYGGSDASGTMGGACGYG+LY  GYGT TAALSTALF
Sbjct: 10  VLAALFIAVDAFRPSGLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALF 69

Query: 70  NDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           NDGASCG+C +ITCD+  D RWC+KGASV +TATNFCPPNFALPNNNGG
Sbjct: 70  NDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGG 118

[Close]
BLAST of Cp4.1LG07g03560 vs. Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 164.9 bits (416), Expect = 5.5e-40
Identity = 81/115 (70.43%), Postives = 91/115 (79.13%), Query Frame = 1 

Query: 4   AFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTAA 63
           AF    +L       +AF+ASGW    ATFYGGSDASGTMGGACGYGNLY  GYGT TAA
Sbjct: 12  AFVSYALLAAASTTVEAFAASGWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAA 71

Query: 64  LSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           LSTALF+DGASCGQC  +TCD + DPRWC  GASVTVTATNFCPPN+ALP+++GG
Sbjct: 72  LSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGG 126

[Close]
BLAST of Cp4.1LG07g03560 vs. Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 1.6e-39
Identity = 79/114 (69.30%), Postives = 90/114 (78.95%), Query Frame = 1 

Query: 5   FAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTAAL 64
           F   L  C     A +F+ASGW  A ATFYGGSDASGTMGGACGYG+LY TGYGT+TAAL
Sbjct: 13  FLALLATCLLWNEAASFTASGWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAAL 72

Query: 65  STALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           ST LFNDGASCGQC +I CDY+ D R+C+ G SVT+TATN CPPN+ALPN+ GG
Sbjct: 73  STVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGG 126

[Close]
BLAST of Cp4.1LG07g03560 vs. Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-37
Identity = 73/99 (73.74%), Postives = 81/99 (81.82%), Query Frame = 1 

Query: 20  AFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTAALSTALFNDGASCGQCI 79
           A   SGW  AHATFYGG+DASGTMGGACGYGNLY  GYGT TAALSTALFNDG +CGQC 
Sbjct: 28  ALEPSGWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCY 87

Query: 80  KITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           K+ CD KTD  WC  G SVT+TATNFCPPN+ LP+++GG
Sbjct: 88  KLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGG 126

[Close]
BLAST of Cp4.1LG07g03560 vs. Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-37
Identity = 76/114 (66.67%), Postives = 86/114 (75.44%), Query Frame = 1 

Query: 5   FAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTAAL 64
           FA + V C  L  AD  +   W  AHATFYGG+DASGTMGG CGYG+LY  GYGT  AAL
Sbjct: 13  FAIAAVGCTQLTTADDAAPPVWQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAAL 72

Query: 65  STALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           STALFNDGASCGQC KI CD K  P+WC  G +VT+TATNFCPPN+ LP++NGG
Sbjct: 73  STALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGG 126

[Close]
BLAST of Cp4.1LG07g03560 vs. TrEMBL
Match: Q39626_CUCSA (Expansin S2 OS=Cucumis sativus GN=Cs-EXPA2 PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.4e-50
Identity = 99/117 (84.62%), Postives = 104/117 (88.89%), Query Frame = 1 

Query: 3   FAFAFSLVLCNFLFA-ADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTST 62
           FAFAF L L NF F   +AF+ASGW PAHATFYG SDASGTMGGACGYGNLY TGYGT T
Sbjct: 6   FAFAFFLALSNFFFLFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQTGYGTRT 65

Query: 63  AALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           AALSTALFNDGASCGQC KI CDYKTDPRWC+KGASVT+TATNFCPPN+ALPNNNGG
Sbjct: 66  AALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNNNGG 122

[Close]
BLAST of Cp4.1LG07g03560 vs. TrEMBL
Match: A0A0B2SLS6_GLYSO (Expansin-A11 OS=Glycine soja GN=glysoja_023173 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.9e-47
Identity = 92/110 (83.64%), Postives = 97/110 (88.18%), Query Frame = 1 

Query: 9   LVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTAALSTAL 68
           LVLC F     AFS SGW  AHATFYGGSDASGTMGGACGYGNLY TGYGT TAALSTA+
Sbjct: 13  LVLCCFTINTSAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGYGTDTAALSTAI 72

Query: 69  FNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           FNDGASCG+C KI CDY+TDPRWC+KGASVT+TATNFCPPNFALPNNNGG
Sbjct: 73  FNDGASCGECYKIICDYQTDPRWCLKGASVTITATNFCPPNFALPNNNGG 122

[Close]
BLAST of Cp4.1LG07g03560 vs. TrEMBL
Match: A0A0R4J337_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G021600 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.9e-47
Identity = 92/110 (83.64%), Postives = 97/110 (88.18%), Query Frame = 1 

Query: 9   LVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTAALSTAL 68
           LVLC F     AFS SGW  AHATFYGGSDASGTMGGACGYGNLY TGYGT TAALSTA+
Sbjct: 13  LVLCCFTINTSAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGYGTDTAALSTAI 72

Query: 69  FNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           FNDGASCG+C KI CDY+TDPRWC+KGASVT+TATNFCPPNFALPNNNGG
Sbjct: 73  FNDGASCGECYKIICDYQTDPRWCLKGASVTITATNFCPPNFALPNNNGG 122

[Close]
BLAST of Cp4.1LG07g03560 vs. TrEMBL
Match: I1K7H3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G021700 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 5.5e-47
Identity = 93/116 (80.17%), Postives = 99/116 (85.34%), Query Frame = 1 

Query: 3   FAFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTA 62
           F     LVLC +     AFS+SGW  AHATFYGGSDASGTMGGACGYGNLY TGYGT TA
Sbjct: 6   FVLVSFLVLCCYTINTCAFSSSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGYGTDTA 65

Query: 63  ALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           ALSTALFNDGASCG+C KITCDY+ DPRWC+KGASVT+TATNFCPPNFALPNNNGG
Sbjct: 66  ALSTALFNDGASCGECYKITCDYQADPRWCLKGASVTITATNFCPPNFALPNNNGG 121

[Close]
BLAST of Cp4.1LG07g03560 vs. TrEMBL
Match: A0A0B2PN47_GLYSO (Expansin-A11 OS=Glycine soja GN=glysoja_034248 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 5.5e-47
Identity = 93/116 (80.17%), Postives = 99/116 (85.34%), Query Frame = 1 

Query: 3   FAFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTA 62
           F     LVLC +     AFS+SGW  AHATFYGGSDASGTMGGACGYGNLY TGYGT TA
Sbjct: 6   FVLVSFLVLCCYTINTCAFSSSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGYGTDTA 65

Query: 63  ALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           ALSTALFNDGASCG+C KITCDY+ DPRWC+KGASVT+TATNFCPPNFALPNNNGG
Sbjct: 66  ALSTALFNDGASCGECYKITCDYQADPRWCLKGASVTITATNFCPPNFALPNNNGG 121

[Close]
BLAST of Cp4.1LG07g03560 vs. TAIR10
Match: AT1G20190.1 (AT1G20190.1 expansin 11)

HSP 1 Score: 174.5 bits (441), Expect = 3.9e-44
Identity = 83/109 (76.15%), Postives = 89/109 (81.65%), Query Frame = 1 

Query: 10  VLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTAALSTALF 69
           VL     A DAF  SG    HATFYGGSDASGTMGGACGYG+LY  GYGT TAALSTALF
Sbjct: 10  VLAALFIAVDAFRPSGLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALF 69

Query: 70  NDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           NDGASCG+C +ITCD+  D RWC+KGASV +TATNFCPPNFALPNNNGG
Sbjct: 70  NDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGG 118

[Close]
BLAST of Cp4.1LG07g03560 vs. TAIR10
Match: AT4G01630.1 (AT4G01630.1 expansin A17)

HSP 1 Score: 151.8 bits (382), Expect = 2.7e-37
Identity = 72/116 (62.07%), Postives = 87/116 (75.00%), Query Frame = 1 

Query: 3   FAFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTA 62
           F+   +++     F   +  ++GW  AHATFYGGSDASGTMGGACGYGNLY  GY T+TA
Sbjct: 5   FSLLVAMIFSTMFFMKISSVSAGWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTA 64

Query: 63  ALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           ALSTALFNDG SCG C +I CD    P+WC+KG S+T+TATNFCPPNFA  ++NGG
Sbjct: 65  ALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGG 120

[Close]
BLAST of Cp4.1LG07g03560 vs. TAIR10
Match: AT1G26770.2 (AT1G26770.2 expansin A10)

HSP 1 Score: 143.7 bits (361), Expect = 7.4e-35
Identity = 70/94 (74.47%), Postives = 76/94 (80.85%), Query Frame = 1 

Query: 25  GWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTAALSTALFNDGASCGQCIKITCD 84
           GW  AHATFYGG DASGTMGGACGYGNLY  GYGTSTAALSTALFN+G SCG C +I C+
Sbjct: 35  GWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCE 94

Query: 85  YKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
              D +WC+ G S+ VTATNFCPPN AL NNNGG
Sbjct: 95  --NDGKWCLPG-SIVVTATNFCPPNNALANNNGG 125

[Close]
BLAST of Cp4.1LG07g03560 vs. TAIR10
Match: AT1G69530.3 (AT1G69530.3 expansin A1)

HSP 1 Score: 143.3 bits (360), Expect = 9.7e-35
Identity = 74/119 (62.18%), Postives = 85/119 (71.43%), Query Frame = 1 

Query: 9   LVLCNFLFAA---------DAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGT 68
           + L  FLF A         + ++  GW  AHATFYGG DASGTMGGACGYGNLY  GYGT
Sbjct: 1   MALVTFLFIATLGAMTSHVNGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGT 60

Query: 69  STAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           +TAALSTALFN+G SCG C +I C  + D +WC+ G S+ VTATNFCPPN ALPNN GG
Sbjct: 61  NTAALSTALFNNGLSCGACFEIRC--QNDGKWCLPG-SIVVTATNFCPPNNALPNNAGG 116

[Close]
BLAST of Cp4.1LG07g03560 vs. TAIR10
Match: AT2G28950.1 (AT2G28950.1 expansin A6)

HSP 1 Score: 142.5 bits (358), Expect = 1.7e-34
Identity = 67/99 (67.68%), Postives = 80/99 (80.81%), Query Frame = 1 

Query: 21  FSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTAALSTALFNDGASCGQCIK 80
           ++  GW  AHATFYGGSDASGTMGGACGYGNLY  GYG +TAALSTALFN+G SCG C +
Sbjct: 26  YNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFE 85

Query: 81  ITCDYKTDPRWCVKGA-SVTVTATNFCPPNFALPNNNGG 119
           + C   +DP+WC  G+ S+ +TATNFCPPNFA P++NGG
Sbjct: 86  LKC--ASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGG 122

[Close]
BLAST of Cp4.1LG07g03560 vs. NCBI nr
Match: gi|525507100|ref|NP_001267591.1| (expansin-A11-like precursor [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 7.7e-50
Identity = 99/117 (84.62%), Postives = 104/117 (88.89%), Query Frame = 1 

Query: 3   FAFAFSLVLCNFLFA-ADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTST 62
           FAFAF L L NF F   +AF+ASGW PAHATFYG SDASGTMGGACGYGNLY TGYGT T
Sbjct: 6   FAFAFFLALSNFFFLFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQTGYGTRT 65

Query: 63  AALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           AALSTALFNDGASCGQC KI CDYKTDPRWC+KGASVT+TATNFCPPN+ALPNNNGG
Sbjct: 66  AALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNNNGG 122

[Close]
BLAST of Cp4.1LG07g03560 vs. NCBI nr
Match: gi|659089105|ref|XP_008445329.1| (PREDICTED: expansin-A11 [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 1.9e-48
Identity = 99/118 (83.90%), Postives = 104/118 (88.14%), Query Frame = 1 

Query: 3   FAFAFS-LVLCNFLFA-ADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTS 62
           FAFAF  L L NF F   +AF+ASGW PAHATFYG SDASGTMGGACGYGNLY TGYGT 
Sbjct: 6   FAFAFFFLALSNFFFIFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQTGYGTR 65

Query: 63  TAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           TAALSTALFNDGASCGQC KI CDYKTDPRWC+KGASVT+TATNFCPPN+ALPNNNGG
Sbjct: 66  TAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNNNGG 123

[Close]
BLAST of Cp4.1LG07g03560 vs. NCBI nr
Match: gi|734431749|gb|KHN45950.1| (Expansin-A11 [Glycine soja])

HSP 1 Score: 196.4 bits (498), Expect = 2.7e-47
Identity = 92/110 (83.64%), Postives = 97/110 (88.18%), Query Frame = 1 

Query: 9   LVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTAALSTAL 68
           LVLC F     AFS SGW  AHATFYGGSDASGTMGGACGYGNLY TGYGT TAALSTA+
Sbjct: 13  LVLCCFTINTSAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGYGTDTAALSTAI 72

Query: 69  FNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           FNDGASCG+C KI CDY+TDPRWC+KGASVT+TATNFCPPNFALPNNNGG
Sbjct: 73  FNDGASCGECYKIICDYQTDPRWCLKGASVTITATNFCPPNFALPNNNGG 122

[Close]
BLAST of Cp4.1LG07g03560 vs. NCBI nr
Match: gi|571458546|ref|XP_006581153.1| (PREDICTED: expansin-A11-like [Glycine max])

HSP 1 Score: 194.9 bits (494), Expect = 7.9e-47
Identity = 93/116 (80.17%), Postives = 99/116 (85.34%), Query Frame = 1 

Query: 3   FAFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTA 62
           F     LVLC +     AFS+SGW  AHATFYGGSDASGTMGGACGYGNLY TGYGT TA
Sbjct: 6   FVLVSFLVLCCYTINTCAFSSSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGYGTDTA 65

Query: 63  ALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           ALSTALFNDGASCG+C KITCDY+ DPRWC+KGASVT+TATNFCPPNFALPNNNGG
Sbjct: 66  ALSTALFNDGASCGECYKITCDYQADPRWCLKGASVTITATNFCPPNFALPNNNGG 121

[Close]
BLAST of Cp4.1LG07g03560 vs. NCBI nr
Match: gi|734339798|gb|KHN09063.1| (Expansin-A11 [Glycine soja])

HSP 1 Score: 194.9 bits (494), Expect = 7.9e-47
Identity = 93/116 (80.17%), Postives = 99/116 (85.34%), Query Frame = 1 

Query: 3   FAFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTA 62
           F     LVLC +     AFS+SGW  AHATFYGGSDASGTMGGACGYGNLY TGYGT TA
Sbjct: 6   FVLVSFLVLCCYTINTCAFSSSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGYGTDTA 65

Query: 63  ALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 119
           ALSTALFNDGASCG+C KITCDY+ DPRWC+KGASVT+TATNFCPPNFALPNNNGG
Sbjct: 66  ALSTALFNDGASCGECYKITCDYQADPRWCLKGASVTITATNFCPPNFALPNNNGG 121

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g03560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EXP11_ARATH7.0e-4376.15Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1[more]
EXP29_ORYSJ5.5e-4070.43Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2[more]
EXPA1_ORYSJ1.6e-3969.30Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2[more]
EXP13_ORYSJ1.1e-3773.74Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2[more]
EXP14_ORYSJ1.5e-3766.67Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2[more]
BLAST of Cp4.1LG07g03560 vs. TrEMBL
Match NameE-valueIdentityDescription
Q39626_CUCSA5.4e-5084.62Expansin S2 OS=Cucumis sativus GN=Cs-EXPA2 PE=2 SV=1[more]
A0A0B2SLS6_GLYSO1.9e-4783.64Expansin-A11 OS=Glycine soja GN=glysoja_023173 PE=4 SV=1[more]
A0A0R4J337_SOYBN1.9e-4783.64Uncharacterized protein OS=Glycine max GN=GLYMA_04G021600 PE=4 SV=1[more]
I1K7H3_SOYBN5.5e-4780.17Uncharacterized protein OS=Glycine max GN=GLYMA_06G021700 PE=4 SV=1[more]
A0A0B2PN47_GLYSO5.5e-4780.17Expansin-A11 OS=Glycine soja GN=glysoja_034248 PE=4 SV=1[more]
BLAST of Cp4.1LG07g03560 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G20190.13.9e-4476.15 expansin 11[more]
AT4G01630.12.7e-3762.07 expansin A17[more]
AT1G26770.27.4e-3574.47 expansin A10[more]
AT1G69530.39.7e-3562.18 expansin A1[more]
AT2G28950.11.7e-3467.68 expansin A6[more]
BLAST of Cp4.1LG07g03560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|525507100|ref|NP_001267591.1|7.7e-5084.62expansin-A11-like precursor [Cucumis sativus][more]
gi|659089105|ref|XP_008445329.1|1.9e-4883.90PREDICTED: expansin-A11 [Cucumis melo][more]
gi|734431749|gb|KHN45950.1|2.7e-4783.64Expansin-A11 [Glycine soja][more]
gi|571458546|ref|XP_006581153.1|7.9e-4780.17PREDICTED: expansin-A11-like [Glycine max][more]
gi|734339798|gb|KHN09063.1|7.9e-4780.17Expansin-A11 [Glycine soja][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0009664plant-type cell wall organization
Vocabulary: INTERPRO
TermDefinition
IPR009009RlpA-like_DPBB
IPR007118Expan_Lol_pI
IPR007112Expansin/allergen_DPBB_dom
IPR002963Expansin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009664 plant-type cell wall organization
cellular_component GO:0005618 cell wall
cellular_component GO:0005576 extracellular region
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g03560.1Cp4.1LG07g03560.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002963ExpansinPRINTSPR01226EXPANSINcoord: 56..70
score: 3.1E-16coord: 85..96
score: 3.1E-16coord: 98..108
score: 3.1
IPR007112Expansin/pollen allergen, DPBB domainSMARTSM00837dpbb_1coord: 61..118
score: 5.5
IPR007112Expansin/pollen allergen, DPBB domainPROFILEPS50842EXPANSIN_EG45coord: 44..118
score: 19
IPR007118Expansin/Lol pIPRINTSPR01225EXPANSNFAMLYcoord: 25..40
score: 3.4E-25coord: 43..61
score: 3.4E-25coord: 65..83
score: 3.4
IPR009009RlpA-like protein, double-psi beta-barrel domainGENE3DG3DSA:2.40.40.10coord: 10..109
score: 9.1
IPR009009RlpA-like protein, double-psi beta-barrel domainPFAMPF03330DPBB_1coord: 61..108
score: 8.0
IPR009009RlpA-like protein, double-psi beta-barrel domainunknownSSF50685Barwin-like endoglucanasescoord: 11..114
score: 3.0
NoneNo IPR availablePANTHERPTHR31867FAMILY NOT NAMEDcoord: 9..118
score: 9.3
NoneNo IPR availablePANTHERPTHR31867:SF4EXPANSIN-A11coord: 9..118
score: 9.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG07g03560Cla022406Watermelon (97103) v1cpewmB782
Cp4.1LG07g03560ClCG08G014110Watermelon (Charleston Gray)cpewcgB748
Cp4.1LG07g03560Lsi08G013020Bottle gourd (USVL1VR-Ls)cpelsiB685
Cp4.1LG07g03560MELO3C011350.2Melon (DHL92) v3.6.1cpemedB897
Cp4.1LG07g03560CsaV3_2G024320Cucumber (Chinese Long) v3cpecucB1018
Cp4.1LG07g03560Bhi04G000101Wax gourdcpewgoB1029
Cp4.1LG07g03560CsGy2G016740Cucumber (Gy14) v2cgybcpeB275
Cp4.1LG07g03560Carg03980Silver-seed gourdcarcpeB1368
Cp4.1LG07g03560Carg09390Silver-seed gourdcarcpeB0205
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG07g03560Cp4.1LG11g02670Cucurbita pepo (Zucchini)cpecpeB146
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g03560Cucurbita moschata (Rifu)cmocpeB750
Cp4.1LG07g03560Wild cucumber (PI 183967)cpecpiB850
Cp4.1LG07g03560Wild cucumber (PI 183967)cpecpiB825
Cp4.1LG07g03560Cucumber (Chinese Long) v2cpecuB824
Cp4.1LG07g03560Bottle gourd (USVL1VR-Ls)cpelsiB662
Cp4.1LG07g03560Watermelon (Charleston Gray)cpewcgB732
Cp4.1LG07g03560Watermelon (Charleston Gray)cpewcgB735
Cp4.1LG07g03560Watermelon (97103) v1cpewmB808
Cp4.1LG07g03560Melon (DHL92) v3.5.1cpemeB761
Cp4.1LG07g03560Cucumber (Gy14) v2cgybcpeB987
Cp4.1LG07g03560Silver-seed gourdcarcpeB0572
Cp4.1LG07g03560Cucurbita pepo (Zucchini)cpecpeB427
Cp4.1LG07g03560Cucumber (Gy14) v1cgycpeB1047
Cp4.1LG07g03560Cucurbita maxima (Rimu)cmacpeB203
Cp4.1LG07g03560Cucurbita maxima (Rimu)cmacpeB797
Cp4.1LG07g03560Cucurbita moschata (Rifu)cmocpeB174