Carg03980 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03980
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Expansin
Location	Cucurbita_argyrosperma_scaffold_011 : 1154345 .. 1156683 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAACTTTCTTTCGTATTCGCTTTCTCTCTCGTTCTCTGCAACTTCCTCTTTGCTGCCGATGCTTTTAGTGCATCGGGATGGTATCCCGCTCATGCTACGTTCTACGGCGGTAGCGATGCATCGGGGACAATGGGTAAGTAAACGACTTTGTTTCGTAATGTTTCTGTTTCTTGTTTTTTGTAAATTTTTTTAGTTGAATATATGTTTGATAATTATTTGTAGTCTTAAAATCGAAGTTTAAAAATTAAAAATTTACGTGAAAATTGAATTTTCCCTTTTCCAATCGATGTGGGACCCCCCAATCCATCTTCTTTCGAGGCCAACGTCCTTGCTGGAATACCGCCTTCTATCCACCTCCTTTGGGGGCTCAGTTTCCTTACTGGCACATCGCCTTGTGTCCACTTCCCTTTGGAGCTTAGTCTCCTTGCTGGCACATCACCTTGTGTCCACCTCCCTTTAGAACTCAATCTGGCACAACCTTGTGACCACCTGTCCAGTTTCCTTCTAGCCAGCATTCTTGTTGGCACATCGCCTCATGTCCACATTCTTTTAGGGCTCAGCCACTTGGCACGCAACCTTGTGCCTACAGCCTTTTGGGGTAGGGGCTCAACCTCGTTGCTGGTACACATTCTTGTGTCTACCTCCTTTTGGGGCTCAGCCTCATTGCTGGCAAATTGACTGGTGTTTGGACTCTAATACCATTTGTAAAAGTCAAAGCCCACCGTAGCAAATATGATTCATTTTGGGTTTCCCTTTCGGGTTGTGTCGGTAAGTTTTTAGAACTTGTCTATTCCGGATAGGCTTCCACAACCTTATAAATAATGTTTTGTTCTCCTCCCCCAGTTAATATGGGATCTCACCAGTAACATTCCAACATCCACATGTAACTATTATTTAAATATTTTTTAAAAAATTAATAGATAATTTATATTTTTCACCCTAATAAATTTAATAATATTTAGTAAATAAAAAATATAATATTATAATCCTAATTTTAAAAATTAATTTTAATATTAAAAAATAAGCAAATAAATATATATAATATAACAAATTTTATTAGCTGGTTCACTGATTTTATCGCCGGCCAAACCATGTTGTTGACCGTTGCAGGAGGAGCTTGTGGGTATGGGAACTTGTACGACACGGGTTACGGGACAAACACGGCAGCGCTGAGCACCGCGCTGTTCAACGACGGAGCATCCTGCGGGCAGTGCATCAAGATCACGTGCGATTACAAGACCGACCCCCGTTGGTGCGTCAAAGGGGCGTCGGTGACCGTAACAGCCACCAATTTCTGCCCACCAAACTTCGCTCTCCCCAACAACAACGGCGGATGGTGCAACCCTCCGCTTAAGCACTTCGACATGGCCCAACCCGCTTGGGAAAAGATCGGCATTTATCGAGGCGGAATCATCCCCGTCCTCTACCAAAGGTAACAAAAAAAAAAAATCATATTTTATCGTAAATTATAATTTACCATATATATCATATTTGACCCATTATTACCGTCAAATATCTCGTATGATTGAAGATATTTAGCCTTACCATAGGTATCATATTTGTACAAATATCTTGTATGATCGAGATATTTAGCATTTCATTACGATTTACTATAGGTATCGTATTTGTCATTTGATTAGAGGTATACATCTCGTATGATTGAGATATTTAGTCTTCCATTACGGTTTATCATAGGTATCATATTTGTATAAATATCTTGTATGATTGAGATATTTAGTCTTTCATTACGGTTTACCATAAATATCATATTTGTCATTTGCTGATATTTATATAATTGAGATATTTAGCTTTTCACGACCGTTTATTATAGTATCATATTTGTCATCTAATTATAGGCAAATATCTAGAATCATTCGGATATTTAGTTTCTATTATGGTTTACTATAACTATTCATTTGATTGCTCTTTTCATTTTCTTTATAATTTATTTGATTTTATAAATGATTATAAATAGAGAATTTCACGGTCCTTATTTGAACTGACGGATTAAATTCTACAGAGTTCCTTGTGTAAAGAAAGGAGGGGTGAGGTTCACAGTGAACGGACGAGACTATTTTGAGCTGGTTTTGATAAGCAACGTGGGAGGAGCTGGGGACATCCAAGCGGTGTCGATCAAGGGCTCGAAATCAAGCCAATGGATGGCGATGTCGAGGAATTGGGGCATGAATTGGCAGTCGAATTCGTATCTAAATGGGCAAACTCTGTCGTTCAAGGTGACCACGACCGACGGGCAGACACAAGTGTTCAACAACGTTGTCCCTTCGAGCTGGAGGTTTGGGCAAACGTTTGGGAGCAGTGTCCAATTCAGCTGA

mRNA sequence

ATGGCCAAACTTTCTTTCGTATTCGCTTTCTCTCTCGTTCTCTGCAACTTCCTCTTTGCTGCCGATGCTTTTAGTGCATCGGGATGGTATCCCGCTCATGCTACGTTCTACGGCGGTAGCGATGCATCGGGGACAATGGGAGGAGCTTGTGGGTATGGGAACTTGTACGACACGGGTTACGGGACAAACACGGCAGCGCTGAGCACCGCGCTGTTCAACGACGGAGCATCCTGCGGGCAGTGCATCAAGATCACGTGCGATTACAAGACCGACCCCCGTTGGTGCGTCAAAGGGGCGTCGGTGACCGTAACAGCCACCAATTTCTGCCCACCAAACTTCGCTCTCCCCAACAACAACGGCGGATGCAACGTGGGAGGAGCTGGGGACATCCAAGCGGTGTCGATCAAGGGCTCGAAATCAAGCCAATGGATGGCGATGTCGAGGAATTGGGGCATGAATTGGCAGTCGAATTCGTATCTAAATGGGCAAACTCTGTCGTTCAAGGTGACCACGACCGACGGGCAGACACAAGTGTTCAACAACGTTGTCCCTTCGAGCTGGAGGTTTGGGCAAACGTTTGGGAGCAGTGTCCAATTCAGCTGA

Coding sequence (CDS)

ATGGCCAAACTTTCTTTCGTATTCGCTTTCTCTCTCGTTCTCTGCAACTTCCTCTTTGCTGCCGATGCTTTTAGTGCATCGGGATGGTATCCCGCTCATGCTACGTTCTACGGCGGTAGCGATGCATCGGGGACAATGGGAGGAGCTTGTGGGTATGGGAACTTGTACGACACGGGTTACGGGACAAACACGGCAGCGCTGAGCACCGCGCTGTTCAACGACGGAGCATCCTGCGGGCAGTGCATCAAGATCACGTGCGATTACAAGACCGACCCCCGTTGGTGCGTCAAAGGGGCGTCGGTGACCGTAACAGCCACCAATTTCTGCCCACCAAACTTCGCTCTCCCCAACAACAACGGCGGATGCAACGTGGGAGGAGCTGGGGACATCCAAGCGGTGTCGATCAAGGGCTCGAAATCAAGCCAATGGATGGCGATGTCGAGGAATTGGGGCATGAATTGGCAGTCGAATTCGTATCTAAATGGGCAAACTCTGTCGTTCAAGGTGACCACGACCGACGGGCAGACACAAGTGTTCAACAACGTTGTCCCTTCGAGCTGGAGGTTTGGGCAAACGTTTGGGAGCAGTGTCCAATTCAGCTGA

Protein sequence

MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGGCNVGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPSSWRFGQTFGSSVQFS

Homology

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BLAST of Carg03980 vs. NCBI nr
Match: XP_022951087.1 (expansin-A11-like [Cucurbita moschata])

HSP 1 Score: 374.4 bits (960), Expect = 2.4e-100
Identity = 196/257 (76.26%), Postives = 197/257 (76.65%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60
           MAKLSF FAFSLVLCNFLFAAD FSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY
Sbjct: 1   MAKLSFAFAFSLVLCNFLFAADGFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60

Query: 61  GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120
           GT+TAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG
Sbjct: 61  GTSTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120

Query: 121 G---------------------------------------------------------CN 180
           G                                                          N
Sbjct: 121 GWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLISN 180

Query: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV 201
           VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV
Sbjct: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV 240

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BLAST of Carg03980 vs. NCBI nr
Match: XP_023538192.1 (expansin-A11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 369.4 bits (947), Expect = 7.8e-99
Identity = 194/257 (75.49%), Postives = 195/257 (75.88%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60
           MAK SF FAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY
Sbjct: 1   MAKHSFAFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60

Query: 61  GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120
           GT+TAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG
Sbjct: 61  GTSTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120

Query: 121 G---------------------------------------------------------CN 180
           G                                                          N
Sbjct: 121 GWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLISN 180

Query: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV 201
           VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQ LSFKVTTTDGQTQVFNNVV
Sbjct: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQALSFKVTTTDGQTQVFNNVV 240

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BLAST of Carg03980 vs. NCBI nr
Match: XP_023002477.1 (expansin-A11-like [Cucurbita maxima])

HSP 1 Score: 367.9 bits (943), Expect = 2.3e-98
Identity = 193/257 (75.10%), Postives = 195/257 (75.88%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60
           MAKL F FAFSLVLCNFL AADAF+ASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY
Sbjct: 1   MAKLPFAFAFSLVLCNFLSAADAFTASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60

Query: 61  GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120
           GT+TAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG
Sbjct: 61  GTSTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120

Query: 121 G---------------------------------------------------------CN 180
           G                                                          N
Sbjct: 121 GWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLISN 180

Query: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV 201
           VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQ LSFKVTTTDGQTQVFNNVV
Sbjct: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQALSFKVTTTDGQTQVFNNVV 240

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BLAST of Carg03980 vs. NCBI nr
Match: XP_022997603.1 (expansin-A11-like [Cucurbita maxima])

HSP 1 Score: 320.1 bits (819), Expect = 5.4e-84
Identity = 168/258 (65.12%), Postives = 180/258 (69.77%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCN-FLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTG 60
           MAKL  +FAFSL L N F+F+ +AF+ SGW PAHATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MAKLPLIFAFSLALSNFFIFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60

Query: 61  YGTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNN 120
           YGT TAALSTALFNDGASCGQC KI CDYKTDPRWC+KGASVTVTATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120

Query: 121 GG---------------------------------------------------------C 180
           GG                                                          
Sbjct: 121 GGWCNPPLKHFDMAQPAWQKIGIYRGGIIPVLFQRVPCMKKGGVRFTVNGRDYFELVLIS 180

Query: 181 NVGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNV 201
           NVGGAG IQ+VSIKGSKS  W  MSRNWG NWQSNSYLNGQ+LSFK+TT+DGQT+VFNNV
Sbjct: 181 NVGGAGSIQSVSIKGSKSGNWTPMSRNWGANWQSNSYLNGQSLSFKITTSDGQTRVFNNV 240

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BLAST of Carg03980 vs. NCBI nr
Match: XP_022961884.1 (expansin-A11-like [Cucurbita moschata] >XP_023546763.1 expansin-A11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.4 bits (812), Expect = 3.5e-83
Identity = 167/258 (64.73%), Postives = 179/258 (69.38%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCN-FLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTG 60
           MAKL  +FAFSL L + F F+ +AF+ SGW PAHATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTG 60

Query: 61  YGTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNN 120
           YGT TAALSTALFNDGASCGQC KI CDYKTDPRWC+KGASVTVTATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNN 120

Query: 121 GG---------------------------------------------------------C 180
           GG                                                          
Sbjct: 121 GGWCNPPLKHFDMAQPAWQKIGIYRGGIIPVLFQRVPCMKKGGVRFTVNGRDYFELVLIS 180

Query: 181 NVGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNV 201
           NVGGAG IQ+VSIKGSKS  W  MSRNWG NWQSNSYLNGQ+LSFK+TT+DGQT+VFNNV
Sbjct: 181 NVGGAGSIQSVSIKGSKSGNWTPMSRNWGANWQSNSYLNGQSLSFKITTSDGQTRVFNNV 240

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BLAST of Carg03980 vs. TAIR10
Match: AT1G20190.1 (expansin 11)

HSP 1 Score: 258.8 bits (660), Expect = 2.7e-69
Identity = 140/244 (57.38%), Postives = 156/244 (63.93%), Query Frame = 0


Query: 13  VLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTAALSTALF 72
           VL     A DAF  SG    HATFYGGSDASGTMGGACGYG+LY  GYGT TAALSTALF
Sbjct: 10  VLAALFIAVDAFRPSGLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALF 69

Query: 73  NDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG----------- 132
           NDGASCG+C +ITCD+  D RWC+KGASV +TATNFCPPNFALPNNNGG           
Sbjct: 70  NDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDM 129

Query: 133 ------------------------C----------------------NVGGAGDIQAVSI 192
                                   C                      NVGGAG I++VSI
Sbjct: 130 AQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSI 189

Query: 193 KGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPSSWRFGQTFGS 200
           KGSK+  W+AMSRNWG NWQSN+YL+GQ LSF +TTTDG T+VF NVVPSSW FGQ + S
Sbjct: 190 KGSKTG-WLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSWSFGQIYSS 249

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BLAST of Carg03980 vs. TAIR10
Match: AT2G40610.1 (expansin A8)

HSP 1 Score: 223.4 bits (568), Expect = 1.2e-58
Identity = 118/223 (52.91%), Postives = 139/223 (62.33%), Query Frame = 0


Query: 28  GWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTAALSTALFNDGASCGQCIKITCD 87
           GW   HATFYGG DASGTMGGACGYGNLY  GYGTNTAALSTALFN+G +CG C ++ C+
Sbjct: 29  GWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCN 88

Query: 88  YKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG-------------------------- 147
              DPRWC+ G+++TVTATNFCPPN  L N+NGG                          
Sbjct: 89  --DDPRWCL-GSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGI 148

Query: 148 -------------------------------CNVGGAGDIQAVSIKGSKSSQWMAMSRNW 194
                                           NVGGAGD+ AVSIKGSK+  W AMSRNW
Sbjct: 149 VPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNW 208

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BLAST of Carg03980 vs. TAIR10
Match: AT4G01630.1 (expansin A17)

HSP 1 Score: 223.4 bits (568), Expect = 1.2e-58
Identity = 122/251 (48.61%), Postives = 146/251 (58.17%), Query Frame = 0


Query: 6   FVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTA 65
           F    +++     F   +  ++GW  AHATFYGGSDASGTMGGACGYGNLY  GY TNTA
Sbjct: 5   FSLLVAMIFSTMFFMKISSVSAGWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTA 64

Query: 66  ALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG---- 125
           ALSTALFNDG SCG C +I CD    P+WC+KG S+T+TATNFCPPNFA  ++NGG    
Sbjct: 65  ALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNP 124

Query: 126 -----------------------------------------------------CNVGGAG 185
                                                                 NV G G
Sbjct: 125 PRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGG 184

Query: 186 DIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPSSWR 200
           +I  V IKGSKS++W  MSRNWG N+QSN+YLNGQ+LSFKV  +DG  +   NVVPS+WR
Sbjct: 185 EISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNWR 244

[Close]

BLAST of Carg03980 vs. TAIR10
Match: AT1G69530.3 (expansin A1)

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-57
Identity = 125/248 (50.40%), Postives = 143/248 (57.66%), Query Frame = 0


Query: 12  LVLCNFLFAA---------DAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGT 71
           + L  FLF A         + ++  GW  AHATFYGG DASGTMGGACGYGNLY  GYGT
Sbjct: 1   MALVTFLFIATLGAMTSHVNGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGT 60

Query: 72  NTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG- 131
           NTAALSTALFN+G SCG C +I C  + D +WC+ G S+ VTATNFCPPN ALPNN GG 
Sbjct: 61  NTAALSTALFNNGLSCGACFEIRC--QNDGKWCLPG-SIVVTATNFCPPNNALPNNAGGW 120

Query: 132 --------------------------------------------------------CNVG 191
                                                                    NVG
Sbjct: 121 CNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVG 180

Query: 192 GAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPS 194
           GAGD+ +  +KGS++  W AMSRNWG NWQSNSYLNGQ+LSFKVTT+DGQT V NNV  +
Sbjct: 181 GAGDVHSAMVKGSRTG-WQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANA 240

[Close]

BLAST of Carg03980 vs. TAIR10
Match: AT2G03090.1 (expansin A15)

HSP 1 Score: 217.2 bits (552), Expect = 8.9e-57
Identity = 123/244 (50.41%), Postives = 147/244 (60.25%), Query Frame = 0


Query: 7   VFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTAA 66
           +F F+ ++C+ +   DA    GW  AHATFYGGSDASGTMGGACGYGNLY  GYGTNTAA
Sbjct: 13  LFCFAAMVCS-VHGYDA----GWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAA 72

Query: 67  LSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG----- 126
           LSTALFN+G SCG C +I C  ++D  WC+ GA + VTATNFCPPN ALPNN GG     
Sbjct: 73  LSTALFNNGLSCGACFEIKC--QSDGAWCLPGA-IIVTATNFCPPNNALPNNAGGWCNPP 132

Query: 127 ----------------------------------------------------CNVGGAGD 186
                                                                NVGGAGD
Sbjct: 133 LHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGD 192

Query: 187 IQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPSSWRF 194
           + +V++KGS+ ++W  MSRNWG NWQSN+ LNGQ LSFKVT +DG+T V NN+ P+SW F
Sbjct: 193 VHSVAVKGSR-TRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSF 247

[Close]

BLAST of Carg03980 vs. Swiss-Prot
Match: sp|Q9LNU3|EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana OX=3702 GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.8e-68
Identity = 140/244 (57.38%), Postives = 156/244 (63.93%), Query Frame = 0


Query: 13  VLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTAALSTALF 72
           VL     A DAF  SG    HATFYGGSDASGTMGGACGYG+LY  GYGT TAALSTALF
Sbjct: 10  VLAALFIAVDAFRPSGLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALF 69

Query: 73  NDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG----------- 132
           NDGASCG+C +ITCD+  D RWC+KGASV +TATNFCPPNFALPNNNGG           
Sbjct: 70  NDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDM 129

Query: 133 ------------------------C----------------------NVGGAGDIQAVSI 192
                                   C                      NVGGAG I++VSI
Sbjct: 130 AQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSI 189

Query: 193 KGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPSSWRFGQTFGS 200
           KGSK+  W+AMSRNWG NWQSN+YL+GQ LSF +TTTDG T+VF NVVPSSW FGQ + S
Sbjct: 190 KGSKTG-WLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSWSFGQIYSS 249

[Close]

BLAST of Carg03980 vs. Swiss-Prot
Match: sp|Q7XWU8|EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 246.9 bits (629), Expect = 1.9e-64
Identity = 134/250 (53.60%), Postives = 156/250 (62.40%), Query Frame = 0


Query: 8   FAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTAAL 67
           F   L  C     A +F+ASGW  A ATFYGGSDASGTMGGACGYG+LY TGYGTNTAAL
Sbjct: 13  FLALLATCLLWNEAASFTASGWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAAL 72

Query: 68  STALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG------ 127
           ST LFNDGASCGQC +I CDY+ D R+C+ G SVT+TATN CPPN+ALPN+ GG      
Sbjct: 73  STVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPR 132

Query: 128 ---------------------------------------------------CNVGGAGDI 187
                                                               NVGG G I
Sbjct: 133 QHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSI 192

Query: 188 QAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPSSWRFG 201
           Q+VSIKGS++  WMAMSRNWG+NWQSN+YL+GQ+LSFKVT++DGQT  F +V P+ W FG
Sbjct: 193 QSVSIKGSRTG-WMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGWTFG 252

[Close]

BLAST of Carg03980 vs. Swiss-Prot
Match: sp|Q4PR39|EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 238.0 bits (606), Expect = 8.8e-62
Identity = 135/262 (51.53%), Postives = 158/262 (60.31%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFAA-----DAFSASGWYPAHATFYGGSDASGTMGGACGYGNL 60
           MA+   VFA    +   L AA     +AF+ASGW    ATFYGGSDASGTMGGACGYGNL
Sbjct: 1   MARRGHVFAVVAFVSYALLAAASTTVEAFAASGWSKGTATFYGGSDASGTMGGACGYGNL 60

Query: 61  YDTGYGTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFAL 120
           Y  GYGT TAALSTALF+DGASCGQC  +TCD + DPRWC  GASVTVTATNFCPPN+AL
Sbjct: 61  YTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYAL 120

Query: 121 PNNNGG------------------------------------------------------ 180
           P+++GG                                                      
Sbjct: 121 PSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFEL 180

Query: 181 ---CNVGGAGDIQAVSIKGS-KSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQ 200
               NV  AG ++++ ++GS + + WMAMSRNWG NWQS +YL+GQ LSF+VT TDGQT 
Sbjct: 181 VLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTI 240

[Close]

BLAST of Carg03980 vs. Swiss-Prot
Match: sp|Q4PR52|EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 232.3 bits (591), Expect = 4.8e-60
Identity = 123/234 (52.56%), Postives = 139/234 (59.40%), Query Frame = 0


Query: 23  AFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTAALSTALFNDGASCGQCI 82
           A   SGW  AHATFYGG+DASGTMGGACGYGNLY  GYGT TAALSTALFNDG +CGQC 
Sbjct: 28  ALEPSGWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCY 87

Query: 83  KITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG--------------------- 142
           K+ CD KTD  WC  G SVT+TATNFCPPN+ LP+++GG                     
Sbjct: 88  KLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGI 147

Query: 143 ------------------------------------CNVGGAGDIQAVSIKGSKSSQWMA 200
                                                NVG AG I+A+ +KGSKS  WMA
Sbjct: 148 YRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMA 207

[Close]

BLAST of Carg03980 vs. Swiss-Prot
Match: sp|Q4PR51|EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 228.8 bits (582), Expect = 5.4e-59
Identity = 124/249 (49.80%), Postives = 142/249 (57.03%), Query Frame = 0


Query: 8   FAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTNTAAL 67
           FA + V C  L  AD  +   W  AHATFYGG+DASGTMGG CGYG+LY  GYGT  AAL
Sbjct: 13  FAIAAVGCTQLTTADDAAPPVWQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAAL 72

Query: 68  STALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG------ 127
           STALFNDGASCGQC KI CD K  P+WC  G +VT+TATNFCPPN+ LP++NGG      
Sbjct: 73  STALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPR 132

Query: 128 ---------------------------------------------------CNVGGAGDI 187
                                                               NV   G I
Sbjct: 133 PHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSI 192

Query: 188 QAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVVPSSWRFG 200
           +++ I GS S+ WM M RNWG NW S SYL GQTLSF+VT  DGQT VF N+VPS W+FG
Sbjct: 193 KSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGWKFG 252

[Close]

BLAST of Carg03980 vs. TrEMBL
Match: tr|Q39626|Q39626_CUCSA (Expansin OS=Cucumis sativus OX=3659 GN=Cs-EXPA2 PE=2 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 3.9e-83
Identity = 168/258 (65.12%), Postives = 177/258 (68.60%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFA-ADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTG 60
           M KL F FAF L L NF F   +AF+ASGW PAHATFYG SDASGTMGGACGYGNLY TG
Sbjct: 1   MEKLPFAFAFFLALSNFFFLFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQTG 60

Query: 61  YGTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNN 120
           YGT TAALSTALFNDGASCGQC KI CDYKTDPRWC+KGASVT+TATNFCPPN+ALPNNN
Sbjct: 61  YGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNNN 120

Query: 121 GG---------------------------------------------------------C 180
           GG                                                          
Sbjct: 121 GGWCNPPLKHFDMAQPAWQKIGIYRGGIIPVLYQRVPCKKRGGVRFTVNGRDYFELVLIT 180

Query: 181 NVGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNV 201
           NVGGAGDI++VSIKGSKSS W  MSRNWG NWQSNSYLNGQ+LSFKVTT+DGQ QVFNNV
Sbjct: 181 NVGGAGDIKSVSIKGSKSSNWTPMSRNWGANWQSNSYLNGQSLSFKVTTSDGQVQVFNNV 240

[Close]

BLAST of Carg03980 vs. TrEMBL
Match: tr|A0A1S3BCF4|A0A1S3BCF4_CUCME (Expansin OS=Cucumis melo OX=3656 GN=LOC103488394 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 3.7e-81
Identity = 166/258 (64.34%), Postives = 176/258 (68.22%), Query Frame = 0


Query: 1   MAKLSFVFA-FSLVLCNFLFA-ADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDT 60
           M KL F FA F L L NF F   +AF+ASGW PAHATFYG SDASGTMGGACGYGNLY T
Sbjct: 1   MEKLPFAFAFFFLALSNFFFIFVNAFTASGWAPAHATFYGESDASGTMGGACGYGNLYQT 60

Query: 61  GYGTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNN 120
           GYGT TAALSTALFNDGASCGQC KI CDYKTDPRWC+KGASVT+TATNFCPPN+ALPNN
Sbjct: 61  GYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTITATNFCPPNYALPNN 120

Query: 121 NGG--------------------------------------------------------- 180
           NGG                                                         
Sbjct: 121 NGGWCNPPLKHFDMAQPAWQKIGIYRGGIIPVLYQRVPCKKRGGVRFTVNGRDYFELVLI 180

Query: 181 CNVGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNN 200
            NVGGAGDI++VSIKGSKSS W  MSRNWG NWQSNSYLNGQ+LSFK+TT+DGQTQVFNN
Sbjct: 181 TNVGGAGDIKSVSIKGSKSSNWTPMSRNWGANWQSNSYLNGQSLSFKITTSDGQTQVFNN 240

[Close]

BLAST of Carg03980 vs. TrEMBL
Match: tr|A0A1S3UF14|A0A1S3UF14_VIGRR (Expansin OS=Vigna radiata var. radiata OX=3916 GN=LOC106764716 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 6.8e-75
Identity = 153/256 (59.77%), Postives = 169/256 (66.02%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60
           M ++ F+    + LC+F     AFS SGW  AHATFYGGSDASGTMGGACGYGNLY TGY
Sbjct: 1   MGQVMFLLGSLIGLCSFTITTFAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYATGY 60

Query: 61  GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120
           GT TAALSTALFNDGASCGQC KI CDYK D RWC+KG SVT+TATNFCPPNFALPNNNG
Sbjct: 61  GTRTAALSTALFNDGASCGQCYKIICDYKADSRWCIKGRSVTITATNFCPPNFALPNNNG 120

Query: 121 G---------------------------------------------------------CN 180
           G                                                          N
Sbjct: 121 GWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLISN 180

Query: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV 200
           VGGAG IQ+VSIKGSK ++WMAMSRNWG NWQSN+YLNGQ+LSF+VTTTDG+T+VF N+V
Sbjct: 181 VGGAGSIQSVSIKGSK-TEWMAMSRNWGSNWQSNAYLNGQSLSFRVTTTDGETRVFQNIV 240

[Close]

BLAST of Carg03980 vs. TrEMBL
Match: tr|I1K7H3|I1K7H3_SOYBN (Expansin OS=Glycine max OX=3847 GN=100792023 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.0e-74
Identity = 153/256 (59.77%), Postives = 172/256 (67.19%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60
           MAK+ FV    LVLC +     AFS+SGW  AHATFYGGSDASGTMGGACGYGNLY TGY
Sbjct: 1   MAKVMFVLVSFLVLCCYTINTCAFSSSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGY 60

Query: 61  GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120
           GT+TAALSTALFNDGASCG+C KITCDY+ DPRWC+KGASVT+TATNFCPPNFALPNNNG
Sbjct: 61  GTDTAALSTALFNDGASCGECYKITCDYQADPRWCLKGASVTITATNFCPPNFALPNNNG 120

Query: 121 G---------------------------------------------------------CN 180
           G                                                          N
Sbjct: 121 GWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRTPCVKKGGVKFSVNGRHYFELVLISN 180

Query: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV 200
           VGGAG IQ+VSIKGSK+  WM MSRNWG NWQSN+YLNGQ+LSF+VT TDG T++F +VV
Sbjct: 181 VGGAGSIQSVSIKGSKTG-WMTMSRNWGANWQSNAYLNGQSLSFRVTITDGVTRLFQDVV 240

[Close]

BLAST of Carg03980 vs. TrEMBL
Match: tr|A0A0B2PN47|A0A0B2PN47_GLYSO (Expansin OS=Glycine soja OX=3848 GN=glysoja_034248 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.0e-74
Identity = 153/256 (59.77%), Postives = 172/256 (67.19%), Query Frame = 0


Query: 1   MAKLSFVFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGY 60
           MAK+ FV    LVLC +     AFS+SGW  AHATFYGGSDASGTMGGACGYGNLY TGY
Sbjct: 1   MAKVMFVLVSFLVLCCYTINTCAFSSSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGY 60

Query: 61  GTNTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNG 120
           GT+TAALSTALFNDGASCG+C KITCDY+ DPRWC+KGASVT+TATNFCPPNFALPNNNG
Sbjct: 61  GTDTAALSTALFNDGASCGECYKITCDYQADPRWCLKGASVTITATNFCPPNFALPNNNG 120

Query: 121 G---------------------------------------------------------CN 180
           G                                                          N
Sbjct: 121 GWCNPPLKHFDMSQPAWEKIGIYRGGIVPVLFQRTPCVKKGGVKFSVNGRHYFELVLISN 180

Query: 181 VGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQTLSFKVTTTDGQTQVFNNVV 200
           VGGAG IQ+VSIKGSK+  WM MSRNWG NWQSN+YLNGQ+LSF+VT TDG T++F +VV
Sbjct: 181 VGGAGSIQSVSIKGSKTG-WMTMSRNWGANWQSNAYLNGQSLSFRVTITDGVTRLFQDVV 240

The following BLAST results are available for this feature:

BLAST of Carg03980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951087.1	2.4e-100	76.26	expansin-A11-like [Cucurbita moschata]	[more]
XP_023538192.1	7.8e-99	75.49	expansin-A11-like [Cucurbita pepo subsp. pepo]	[more]
XP_023002477.1	2.3e-98	75.10	expansin-A11-like [Cucurbita maxima]	[more]
XP_022997603.1	5.4e-84	65.12	expansin-A11-like [Cucurbita maxima]	[more]
XP_022961884.1	3.5e-83	64.73	expansin-A11-like [Cucurbita moschata] >XP_023546763.1 expansin-A11-like [Cucurb...	[more]

BLAST of Carg03980 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20190.1	2.7e-69	57.38	expansin 11	[more]
AT2G40610.1	1.2e-58	52.91	expansin A8	[more]
AT4G01630.1	1.2e-58	48.61	expansin A17	[more]
AT1G69530.3	1.1e-57	50.40	expansin A1	[more]
AT2G03090.1	8.9e-57	50.41	expansin A15	[more]

BLAST of Carg03980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LNU3\|EXP11_ARATH	4.8e-68	57.38	Expansin-A11 OS=Arabidopsis thaliana OX=3702 GN=EXPA11 PE=2 SV=1	[more]
sp\|Q7XWU8\|EXPA1_ORYSJ	1.9e-64	53.60	Expansin-A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA1 PE=2 SV=2	[more]
sp\|Q4PR39\|EXP29_ORYSJ	8.8e-62	51.53	Expansin-A29 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA29 PE=2 SV=2	[more]
sp\|Q4PR52\|EXP13_ORYSJ	4.8e-60	52.56	Expansin-A13 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA13 PE=2 SV=2	[more]
sp\|Q4PR51\|EXP14_ORYSJ	5.4e-59	49.80	Expansin-A14 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA14 PE=2 SV=2	[more]

BLAST of Carg03980 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|Q39626\|Q39626_CUCSA	3.9e-83	65.12	Expansin OS=Cucumis sativus OX=3659 GN=Cs-EXPA2 PE=2 SV=1	[more]
tr\|A0A1S3BCF4\|A0A1S3BCF4_CUCME	3.7e-81	64.34	Expansin OS=Cucumis melo OX=3656 GN=LOC103488394 PE=3 SV=1	[more]
tr\|A0A1S3UF14\|A0A1S3UF14_VIGRR	6.8e-75	59.77	Expansin OS=Vigna radiata var. radiata OX=3916 GN=LOC106764716 PE=3 SV=1	[more]
tr\|I1K7H3\|I1K7H3_SOYBN	2.0e-74	59.77	Expansin OS=Glycine max OX=3847 GN=100792023 PE=3 SV=1	[more]
tr\|A0A0B2PN47\|A0A0B2PN47_GLYSO	2.0e-74	59.77	Expansin OS=Glycine soja OX=3848 GN=glysoja_034248 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **Biological Process**
Term	Definition
GO:0009664	plant-type cell wall organization

Vocabulary: **INTERPRO**
Term	Definition
IPR036749	Expansin_CBD_sf
IPR007117	Expansin_CBD
IPR009009	RlpA-like_DPBB
IPR036908	RlpA-like_sf
IPR007112	Expansin/allergen_DPBB_dom
IPR007118	Expan_Lol_pI
IPR002963	Expansin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009664	plant-type cell wall organization
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03980-RA	Carg03980-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002963	Expansin	PRINTS	PR01226	EXPANSIN	coord: 59..73 score: 92.22 coord: 88..99 score: 40.83 coord: 101..111 score: 82.12
IPR007118	Expansin/Lol pI	PRINTS	PR01225	EXPANSNFAMLY	coord: 68..86 score: 60.79 coord: 28..43 score: 68.28 coord: 46..64 score: 73.42
IPR007112	Expansin/pollen allergen, DPBB domain	SMART	SM00837	dpbb_1	coord: 64..148 e-value: 5.1E-21 score: 85.8
IPR007112	Expansin/pollen allergen, DPBB domain	PROSITE	PS50842	EXPANSIN_EG45	coord: 47..123 score: 19.876
IPR036908	RlpA-like domain superfamily	GENE3D	G3DSA:2.40.40.10		coord: 18..193 e-value: 1.9E-30 score: 107.7
IPR036908	RlpA-like domain superfamily	SUPERFAMILY	SSF50685	Barwin-like endoglucanases	coord: 14..126
IPR009009	RlpA-like protein, double-psi beta-barrel domain	PFAM	PF03330	DPBB_1	coord: 64..111 e-value: 1.9E-11 score: 44.0
IPR007117	Expansin, cellulose-binding-like domain	PFAM	PF01357	Pollen_allerg_1	coord: 123..184 e-value: 3.3E-23 score: 81.4
IPR007117	Expansin, cellulose-binding-like domain	PROSITE	PS50843	EXPANSIN_CBD	coord: 123..195 score: 21.704
None	No IPR available	PANTHER	PTHR31867:SF4	EXPANSIN-A11	coord: 123..199 coord: 1..122
None	No IPR available	PANTHER	PTHR31867	FAMILY NOT NAMED	coord: 123..199
None	No IPR available	PANTHER	PTHR31867	FAMILY NOT NAMED	coord: 1..122
IPR036749	Expansin, cellulose-binding-like domain superfamily	SUPERFAMILY	SSF49590	PHL pollen allergen	coord: 123..194

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03980	Cla022406	Watermelon (97103) v1	carwmB0978
Carg03980	ClCG08G014110	Watermelon (Charleston Gray)	carwcgB0958
Carg03980	Lsi08G013020	Bottle gourd (USVL1VR-Ls)	carlsiB898
Carg03980	Cp4.1LG11g02670	Cucurbita pepo (Zucchini)	carcpeB1352
Carg03980	Cp4.1LG07g03560	Cucurbita pepo (Zucchini)	carcpeB1368
Carg03980	Cla97C08G157680	Watermelon (97103) v2	carwmbB1034
Carg03980	Bhi04G000101	Wax gourd	carwgoB1142

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03980	Carg09390	Silver-seed gourd	carcarB168

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03980	Silver-seed gourd	carcarB430
Carg03980	Cucumber (Gy14) v2	carcgybB0964
Carg03980	Cucumber (Gy14) v2	carcgybB0969
Carg03980	Cucumber (Gy14) v1	carcgyB1090
Carg03980	Cucumber (Gy14) v1	carcgyB1101
Carg03980	Cucurbita maxima (Rimu)	carcmaB1349
Carg03980	Cucurbita maxima (Rimu)	carcmaB1355
Carg03980	Cucurbita maxima (Rimu)	carcmaB1357
Carg03980	Cucurbita maxima (Rimu)	carcmaB1360
Carg03980	Cucurbita moschata (Rifu)	carcmoB1310
Carg03980	Cucurbita moschata (Rifu)	carcmoB1317
Carg03980	Cucurbita moschata (Rifu)	carcmoB1319
Carg03980	Cucurbita moschata (Rifu)	carcmoB1321
Carg03980	Cucurbita pepo (Zucchini)	carcpeB1350
Carg03980	Cucurbita pepo (Zucchini)	carcpeB1361
Carg03980	Wild cucumber (PI 183967)	carcpiB1013
Carg03980	Wild cucumber (PI 183967)	carcpiB1019
Carg03980	Cucumber (Chinese Long) v2	carcuB0991
Carg03980	Cucumber (Chinese Long) v2	carcuB0996
Carg03980	Cucumber (Chinese Long) v3	carcucB1019
Carg03980	Cucumber (Chinese Long) v3	carcucB1025
Carg03980	Bottle gourd (USVL1VR-Ls)	carlsiB892
Carg03980	Melon (DHL92) v3.5.1	carmeB0952
Carg03980	Melon (DHL92) v3.5.1	carmeB0955
Carg03980	Melon (DHL92) v3.5.1	carmeB0960
Carg03980	Melon (DHL92) v3.6.1	carmedB0961
Carg03980	Melon (DHL92) v3.6.1	carmedB0966
Carg03980	Watermelon (Charleston Gray)	carwcgB0952
Carg03980	Watermelon (Charleston Gray)	carwcgB0953
Carg03980	Watermelon (97103) v1	carwmB0984
Carg03980	Watermelon (97103) v1	carwmB0985
Carg03980	Watermelon (97103) v2	carwmbB1028