Cp4.1LG08g13240 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g13240
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transmembrane and coiled-coil domains protein 1
Location	Cp4.1LG08 : 9487236 .. 9487811 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACGATCCCCCTTTTCTCCTCCTTCCGATACTCCGATAGCCTCACGGTGGTCGGAATCTCCGTCTGCACCGCCATCGTGTGCGAGGCCATCTCATGGCTTCTCATCTACCGCACGAACTCCTACAAAACCCTACGATCCTCCATCGACAAGGCTGCCAAAAAGCTCGAGACCATGAAGACCGACAGCTCCAAAATCACCGTCAAGAAGTCCAAAACCAAGAAGATAGATCGCGTCGAGACCAGTCTCAAGGAATCCAGCCGCGACCTCTCACTCTTCAAGTTCAAATCCGGCGCCGTCGTTGCCCTTGTTCTGTTCGTCGTCTTTGGATTGCTCAATTCGCTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCGTTTAAGCCTTTTGGACTTGTGATGAAGATGAGCCACCGAGGGTTACAGGGCGATGATCCTACCGATTGCGCTATGGCGTTTCTGTACTTCCTCTGTTCGATTAGCATTAGGACCAATTTGCAGAAGTTCTTGGGATTCTCGCCGCCAAGGGGCGCCGGCGCCGGCTTGTTCCCGATGCCAGATCCTAAGACGAACTGA

mRNA sequence

ATGGCAACGATCCCCCTTTTCTCCTCCTTCCGATACTCCGATAGCCTCACGGTGGTCGGAATCTCCGTCTGCACCGCCATCGTGTGCGAGGCCATCTCATGGCTTCTCATCTACCGCACGAACTCCTACAAAACCCTACGATCCTCCATCGACAAGGCTGCCAAAAAGCTCGAGACCATGAAGACCGACAGCTCCAAAATCACCGTCAAGAAGTCCAAAACCAAGAAGATAGATCGCGTCGAGACCAGTCTCAAGGAATCCAGCCGCGACCTCTCACTCTTCAAGTTCAAATCCGGCGCCGTCGTTGCCCTTGTTCTGTTCGTCGTCTTTGGATTGCTCAATTCGCTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCGTTTAAGCCTTTTGGACTTGTGATGAAGATGAGCCACCGAGGGTTACAGGGCGATGATCCTACCGATTGCGCTATGGCGTTTCTGTACTTCCTCTGTTCGATTAGCATTAGGACCAATTTGCAGAAGTTCTTGGGATTCTCGCCGCCAAGGGGCGCCGGCGCCGGCTTGTTCCCGATGCCAGATCCTAAGACGAACTGA

Coding sequence (CDS)

ATGGCAACGATCCCCCTTTTCTCCTCCTTCCGATACTCCGATAGCCTCACGGTGGTCGGAATCTCCGTCTGCACCGCCATCGTGTGCGAGGCCATCTCATGGCTTCTCATCTACCGCACGAACTCCTACAAAACCCTACGATCCTCCATCGACAAGGCTGCCAAAAAGCTCGAGACCATGAAGACCGACAGCTCCAAAATCACCGTCAAGAAGTCCAAAACCAAGAAGATAGATCGCGTCGAGACCAGTCTCAAGGAATCCAGCCGCGACCTCTCACTCTTCAAGTTCAAATCCGGCGCCGTCGTTGCCCTTGTTCTGTTCGTCGTCTTTGGATTGCTCAATTCGCTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCGTTTAAGCCTTTTGGACTTGTGATGAAGATGAGCCACCGAGGGTTACAGGGCGATGATCCTACCGATTGCGCTATGGCGTTTCTGTACTTCCTCTGTTCGATTAGCATTAGGACCAATTTGCAGAAGTTCTTGGGATTCTCGCCGCCAAGGGGCGCCGGCGCCGGCTTGTTCCCGATGCCAGATCCTAAGACGAACTGA

Protein sequence

MATIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAGLFPMPDPKTN

Homology

[Close]

BLAST of Cp4.1LG08g13240 vs. Swiss-Prot
Match: TMCO1_PONAB (Transmembrane and coiled-coil domain-containing protein 1 OS=Pongo abelii GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.9e-38
Identity = 84/182 (46.15%), Postives = 121/182 (66.48%), Query Frame = 1


Query: 9   SFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTDSSKIT 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K   ++  
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
            ++ K KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  GRQQK-KKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA--GAGLFPMP 188
           P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

[Close]

BLAST of Cp4.1LG08g13240 vs. Swiss-Prot
Match: TMCO1_PIG (Transmembrane and coiled-coil domains protein 1 OS=Sus scrofa GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.9e-38
Identity = 84/182 (46.15%), Postives = 121/182 (66.48%), Query Frame = 1


Query: 9   SFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTDSSKIT 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K   ++  
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
            ++ K KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  GRQQK-KKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA--GAGLFPMP 188
           P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

[Close]

BLAST of Cp4.1LG08g13240 vs. Swiss-Prot
Match: TMCO1_MOUSE (Transmembrane and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Tmco1 PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.9e-38
Identity = 84/182 (46.15%), Postives = 121/182 (66.48%), Query Frame = 1


Query: 9   SFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTDSSKIT 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K   ++  
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
            ++ K KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  GRQQK-KKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA--GAGLFPMP 188
           P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

[Close]

BLAST of Cp4.1LG08g13240 vs. Swiss-Prot
Match: TMCO1_HUMAN (Transmembrane and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=TMCO1 PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.9e-38
Identity = 84/182 (46.15%), Postives = 121/182 (66.48%), Query Frame = 1


Query: 9   SFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTDSSKIT 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K   ++  
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
            ++ K KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  GRQQK-KKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA--GAGLFPMP 188
           P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

[Close]

BLAST of Cp4.1LG08g13240 vs. Swiss-Prot
Match: TMCO1_BOVIN (Transmembrane and coiled-coil domain-containing protein 1 OS=Bos taurus GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.9e-38
Identity = 84/182 (46.15%), Postives = 121/182 (66.48%), Query Frame = 1


Query: 9   SFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTDSSKIT 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K   ++  
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESA 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
            ++ K KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  GRQQK-KKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA--GAGLFPMP 188
           P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

[Close]

BLAST of Cp4.1LG08g13240 vs. TrEMBL
Match: A0A0A0LGX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G799650 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 3.2e-97
Identity = 186/191 (97.38%), Postives = 191/191 (100.00%), Query Frame = 1


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSL+VVGISVCTA++CEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLSVVGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTDSSKITVKKSKTKKIDR+ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 191

[Close]

BLAST of Cp4.1LG08g13240 vs. TrEMBL
Match: W9RII6_9ROSA (Transmembrane and coiled-coil domains protein 1 OS=Morus notabilis GN=L484_018041 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.2e-88
Identity = 172/191 (90.05%), Postives = 182/191 (95.29%), Query Frame = 1


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MA   + +S +YSDSL VVGIS+CTA+VCEAISWLLIYRTNSYK+LRSSIDKAAKKLETM
Sbjct: 1   MALPSMLASLKYSDSLRVVGISICTAVVCEAISWLLIYRTNSYKSLRSSIDKAAKKLETM 60

Query: 61  KTDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTDS+KI  KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSAKIAAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQG+DPTDC+MAFLYFLCSISIRTNLQKFLGFSPPRGA A
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFSPPRGASA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKT+
Sbjct: 181 GLFPMPDPKTS 191

[Close]

BLAST of Cp4.1LG08g13240 vs. TrEMBL
Match: B7FGM9_MEDTR (Transmembrane and coiled-coil protein OS=Medicago truncatula GN=MTR_7g085050 PE=2 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.2e-88
Identity = 170/185 (91.89%), Postives = 179/185 (96.76%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTDSSK 66
           FS F+YSD LTVVGIS CTAIVCEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTDS+K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  ITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           I +KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAGLFPMP 186
           FKPFGLVMKMSHRGLQG+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAGAGLFPMP
Sbjct: 125 FKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAGAGLFPMP 184

Query: 187 DPKTN 192
           DPKT+
Sbjct: 185 DPKTS 189

[Close]

BLAST of Cp4.1LG08g13240 vs. TrEMBL
Match: W9SNZ3_9ROSA (Transmembrane and coiled-coil domains protein 1 OS=Morus notabilis GN=L484_000651 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 3.6e-88
Identity = 171/191 (89.53%), Postives = 182/191 (95.29%), Query Frame = 1


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MA   + +S +YSDSL VVGIS+CTA+VCEAISWLLIYRTNSYK+LRSSIDKAAKKLETM
Sbjct: 1   MALPSMLASLKYSDSLRVVGISICTAVVCEAISWLLIYRTNSYKSLRSSIDKAAKKLETM 60

Query: 61  KTDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KT+S+KI  KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTESAKIAAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQG+DPTDC+MAFLYFLCSISIRTNLQKFLGFSPPRGA A
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFSPPRGASA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKT+
Sbjct: 181 GLFPMPDPKTS 191

[Close]

BLAST of Cp4.1LG08g13240 vs. TrEMBL
Match: I3S6A1_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 3.6e-88
Identity = 169/185 (91.35%), Postives = 178/185 (96.22%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTDSSK 66
           FS F+YSD LTVVGIS CTAIVCEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTDS+K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  ITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           I +KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAGLFPMP 186
           FKPFGLVMKMSHRGLQG+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAGAG FPMP
Sbjct: 125 FKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAGAGFFPMP 184

Query: 187 DPKTN 192
           DPKT+
Sbjct: 185 DPKTS 189

[Close]

BLAST of Cp4.1LG08g13240 vs. TAIR10
Match: AT3G12030.1 (AT3G12030.1 Protein of unknown function DUF106, transmembrane)

HSP 1 Score: 313.9 bits (803), Expect = 6.7e-86
Identity = 164/193 (84.97%), Postives = 179/193 (92.75%), Query Frame = 1


Query: 3   TIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKT 62
           TIPLF+SF+Y+DSLTVVGIS CTA+VCEAISW+LIYRT+SYK+L+ SIDKA KKLETMKT
Sbjct: 4   TIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLETMKT 63

Query: 63  D--SSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 122
           +  SSK+++KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 64  ENPSSKLSIKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 123

Query: 123 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA-- 182
           VVAKLPF P  +V KMSHRGL+GDDPTDC+MAFLY LCSISIRTNLQKFLGFSPPRGA  
Sbjct: 124 VVAKLPFHPITIVKKMSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAG 183

Query: 183 GAGLFPMPDPKTN 192
             GLFPMPDPKTN
Sbjct: 184 AGGLFPMPDPKTN 196

[Close]

BLAST of Cp4.1LG08g13240 vs. TAIR10
Match: AT5G06660.1 (AT5G06660.1 Protein of unknown function DUF106, transmembrane)

HSP 1 Score: 311.2 bits (796), Expect = 4.3e-85
Identity = 167/196 (85.20%), Postives = 181/196 (92.35%), Query Frame = 1


Query: 1   MAT-IPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLET 60
           MAT IPLF+SF+Y+DSLTVVGIS CTA+VCEAISW+LIYRT+SYK+L+SSIDKA+KKLET
Sbjct: 1   MATAIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLET 60

Query: 61  MKTD--SSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120
           MKTD  SSK+T KKSKTKKIDRVE+SLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF
Sbjct: 61  MKTDNPSSKLTNKKSKTKKIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120

Query: 121 EGKVVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRG 180
           EGKVVAKLPF P  +V KMSHRGL+GDD TDC+MAFLY LCSISIRTNLQKFLGFSPPRG
Sbjct: 121 EGKVVAKLPFHPITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRG 180

Query: 181 A--GAGLFPMPDPKTN 192
           A    GLFPMPDPKTN
Sbjct: 181 AAGAGGLFPMPDPKTN 196

[Close]

BLAST of Cp4.1LG08g13240 vs. NCBI nr
Match: gi|449437555|ref|XP_004136557.1| (PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Cucumis sativus])

HSP 1 Score: 362.5 bits (929), Expect = 4.7e-97
Identity = 186/191 (97.38%), Postives = 191/191 (100.00%), Query Frame = 1


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSL+VVGISVCTA++CEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLSVVGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTDSSKITVKKSKTKKIDR+ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 191

[Close]

BLAST of Cp4.1LG08g13240 vs. NCBI nr
Match: gi|659084702|ref|XP_008443026.1| (PREDICTED: transmembrane and coiled-coil domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 361.3 bits (926), Expect = 1.0e-96
Identity = 185/191 (96.86%), Postives = 191/191 (100.00%), Query Frame = 1


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSLTV+GISVCTA++CEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVLGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTDSSKITVKKSKTKKIDR+ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQG+DPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGEDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 191

[Close]

BLAST of Cp4.1LG08g13240 vs. NCBI nr
Match: gi|703122421|ref|XP_010102569.1| (Transmembrane and coiled-coil domains protein 1 [Morus notabilis])

HSP 1 Score: 334.0 bits (855), Expect = 1.8e-88
Identity = 172/191 (90.05%), Postives = 182/191 (95.29%), Query Frame = 1


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MA   + +S +YSDSL VVGIS+CTA+VCEAISWLLIYRTNSYK+LRSSIDKAAKKLETM
Sbjct: 1   MALPSMLASLKYSDSLRVVGISICTAVVCEAISWLLIYRTNSYKSLRSSIDKAAKKLETM 60

Query: 61  KTDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTDS+KI  KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSAKIAAKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQG+DPTDC+MAFLYFLCSISIRTNLQKFLGFSPPRGA A
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFSPPRGASA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKT+
Sbjct: 181 GLFPMPDPKTS 191

[Close]

BLAST of Cp4.1LG08g13240 vs. NCBI nr
Match: gi|357508575|ref|XP_003624576.1| (transmembrane and coiled-coil protein [Medicago truncatula])

HSP 1 Score: 334.0 bits (855), Expect = 1.8e-88
Identity = 170/185 (91.89%), Postives = 179/185 (96.76%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTDSSK 66
           FS F+YSD LTVVGIS CTAIVCEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTDS+K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  ITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           I +KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAGLFPMP 186
           FKPFGLVMKMSHRGLQG+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAGAGLFPMP
Sbjct: 125 FKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAGAGLFPMP 184

Query: 187 DPKTN 192
           DPKT+
Sbjct: 185 DPKTS 189

[Close]

BLAST of Cp4.1LG08g13240 vs. NCBI nr
Match: gi|1009161477|ref|XP_015898920.1| (PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Ziziphus jujuba])

HSP 1 Score: 332.4 bits (851), Expect = 5.2e-88
Identity = 174/191 (91.10%), Postives = 183/191 (95.81%), Query Frame = 1


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MA   + S+F+YSDSL VVGIS+CTAIVCEAISWLLIYRTNSYK+LRSSIDKAAKKLETM
Sbjct: 1   MAMPQMLSAFKYSDSLRVVGISICTAIVCEAISWLLIYRTNSYKSLRSSIDKAAKKLETM 60

Query: 61  KTDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTD++KIT KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDTAKIT-KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGL+MKMSHRGLQGDD TDC+MAFLYFLCSISIRTNLQKFLGFSPPRGA A
Sbjct: 121 VVAKLPFKPFGLLMKMSHRGLQGDDSTDCSMAFLYFLCSISIRTNLQKFLGFSPPRGASA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 190

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g13240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TMCO1_PONAB	4.9e-38	46.15	Transmembrane and coiled-coil domain-containing protein 1 OS=Pongo abelii GN=TMC...	[more]
TMCO1_PIG	4.9e-38	46.15	Transmembrane and coiled-coil domains protein 1 OS=Sus scrofa GN=TMCO1 PE=2 SV=1	[more]
TMCO1_MOUSE	4.9e-38	46.15	Transmembrane and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Tmc...	[more]
TMCO1_HUMAN	4.9e-38	46.15	Transmembrane and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=TMC...	[more]
TMCO1_BOVIN	4.9e-38	46.15	Transmembrane and coiled-coil domain-containing protein 1 OS=Bos taurus GN=TMCO1...	[more]

BLAST of Cp4.1LG08g13240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGX0_CUCSA	3.2e-97	97.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G799650 PE=4 SV=1	[more]
W9RII6_9ROSA	1.2e-88	90.05	Transmembrane and coiled-coil domains protein 1 OS=Morus notabilis GN=L484_01804...	[more]
B7FGM9_MEDTR	1.2e-88	91.89	Transmembrane and coiled-coil protein OS=Medicago truncatula GN=MTR_7g085050 PE=...	[more]
W9SNZ3_9ROSA	3.6e-88	89.53	Transmembrane and coiled-coil domains protein 1 OS=Morus notabilis GN=L484_00065...	[more]
I3S6A1_MEDTR	3.6e-88	91.35	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]

BLAST of Cp4.1LG08g13240 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12030.1	6.7e-86	84.97	Protein of unknown function DUF106, transmembrane	[more]
AT5G06660.1	4.3e-85	85.20	Protein of unknown function DUF106, transmembrane	[more]

BLAST of Cp4.1LG08g13240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437555\|ref\|XP_004136557.1\|	4.7e-97	97.38	PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Cucumis sa...	[more]
gi\|659084702\|ref\|XP_008443026.1\|	1.0e-96	96.86	PREDICTED: transmembrane and coiled-coil domain-containing protein 1-like [Cucum...	[more]
gi\|703122421\|ref\|XP_010102569.1\|	1.8e-88	90.05	Transmembrane and coiled-coil domains protein 1 [Morus notabilis]	[more]
gi\|357508575\|ref\|XP_003624576.1\|	1.8e-88	91.89	transmembrane and coiled-coil protein [Medicago truncatula]	[more]
gi\|1009161477\|ref\|XP_015898920.1\|	5.2e-88	91.10	PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Ziziphus j...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR008559	TMCO1
IPR002809	EMC3/TMCO1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0070588	calcium ion transmembrane transport
biological_process	GO:0032469	endoplasmic reticulum calcium ion homeostasis
biological_process	GO:0006816	calcium ion transport
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005262	calcium channel activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g13240.1	Cp4.1LG08g13240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002809	Protein of unknown function DUF106, transmembrane	PFAM	PF01956	DUF106	coord: 16..173 score: 6.2
IPR002809	Protein of unknown function DUF106, transmembrane	SMART	SM01415	DUF106_2	coord: 14..174 score: 2.6
IPR008559	Uncharacterised conserved protein UCP023322, transmembrane eukaryotic	PIR	PIRSF023322	UCP023322_TM_coiled-coil	coord: 5..191 score: 6.5
IPR008559	Uncharacterised conserved protein UCP023322, transmembrane eukaryotic	PANTHER	PTHR20917	PNAS-RELATED	coord: 1..191 score: 2.6E
None	No IPR available	unknown	Coil	Coil	coord: 43..63 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g13240	Cucsa.242510	Cucumber (Gy14) v1	cgycpeB0649
Cp4.1LG08g13240	CmaCh14G004030	Cucurbita maxima (Rimu)	cmacpeB294
Cp4.1LG08g13240	CmaCh06G001150	Cucurbita maxima (Rimu)	cmacpeB852
Cp4.1LG08g13240	CmoCh06G001070	Cucurbita moschata (Rifu)	cmocpeB797
Cp4.1LG08g13240	CmoCh14G004060	Cucurbita moschata (Rifu)	cmocpeB255
Cp4.1LG08g13240	Cla017560	Watermelon (97103) v1	cpewmB837
Cp4.1LG08g13240	Csa3G799650	Cucumber (Chinese Long) v2	cpecuB856
Cp4.1LG08g13240	MELO3C009607	Melon (DHL92) v3.5.1	cpemeB801
Cp4.1LG08g13240	ClCG10G017690	Watermelon (Charleston Gray)	cpewcgB775
Cp4.1LG08g13240	CSPI03G36270	Wild cucumber (PI 183967)	cpecpiB859
Cp4.1LG08g13240	Lsi03G017530	Bottle gourd (USVL1VR-Ls)	cpelsiB712
Cp4.1LG08g13240	MELO3C009607.2	Melon (DHL92) v3.6.1	cpemedB942
Cp4.1LG08g13240	Bhi11G002096	Wax gourd	cpewgoB1082
Cp4.1LG08g13240	CsGy3G033730	Cucumber (Gy14) v2	cgybcpeB449
Cp4.1LG08g13240	Carg01213	Silver-seed gourd	carcpeB0233
Cp4.1LG08g13240	Carg03582	Silver-seed gourd	carcpeB0356

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG08g13240	Cp4.1LG03g03930	Cucurbita pepo (Zucchini)	cpecpeB484

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g13240	Cucumber (Chinese Long) v3	cpecucB1054
Cp4.1LG08g13240	Wax gourd	cpewgoB1080